HG10010319.1 (mRNA) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10010319.1
Type	mRNA
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	classical arabinogalactan protein 25
Location	Chr06: 21067963 .. 21068283 (+)
Sequence length	321
RNA-Seq Expression	HG10010319.1
Synteny	HG10010319.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTTTTCATGGCCATGCCCTCACCCTTGCTTGCTTTACCCATCTCTCTTTTTCAACAACTTTCCCCTGAAATTGCTCCATTATTGCCTTCTACCGGTGGTAAGATTCCTTCTGCAACTGATTCAATTCCCACCATTCCTTCCAACCCTAGCCCTCCAAATCCAGACGACTTCGAGGCTTCTGCTCCTGATTCCTCTGCCCTTTCTCCATTTGGCTTCCCAGGTTCTTCCGCACTTCCTAAATTCTTCCCTTCCTATTCAAATTGGCTTCTTCTTCTCACTGGATTAGCTGTATTTCCCTTCTCTCTGCACTTTTATTGA

mRNA sequence

ATGTTTTTCATGGCCATGCCCTCACCCTTGCTTGCTTTACCCATCTCTCTTTTTCAACAACTTTCCCCTGAAATTGCTCCATTATTGCCTTCTACCGGTGGTAAGATTCCTTCTGCAACTGATTCAATTCCCACCATTCCTTCCAACCCTAGCCCTCCAAATCCAGACGACTTCGAGGCTTCTGCTCCTGATTCCTCTGCCCTTTCTCCATTTGGCTTCCCAGGTTCTTCCGCACTTCCTAAATTCTTCCCTTCCTATTCAAATTGGCTTCTTCTTCTCACTGGATTAGCTGTATTTCCCTTCTCTCTGCACTTTTATTGA

Coding sequence (CDS)

ATGTTTTTCATGGCCATGCCCTCACCCTTGCTTGCTTTACCCATCTCTCTTTTTCAACAACTTTCCCCTGAAATTGCTCCATTATTGCCTTCTACCGGTGGTAAGATTCCTTCTGCAACTGATTCAATTCCCACCATTCCTTCCAACCCTAGCCCTCCAAATCCAGACGACTTCGAGGCTTCTGCTCCTGATTCCTCTGCCCTTTCTCCATTTGGCTTCCCAGGTTCTTCCGCACTTCCTAAATTCTTCCCTTCCTATTCAAATTGGCTTCTTCTTCTCACTGGATTAGCTGTATTTCCCTTCTCTCTGCACTTTTATTGA

Protein sequence

MFFMAMPSPLLALPISLFQQLSPEIAPLLPSTGGKIPSATDSIPTIPSNPSPPNPDDFEASAPDSSALSPFGFPGSSALPKFFPSYSNWLLLLTGLAVFPFSLHFY

Homology

[Close]

BLAST of HG10010319.1 vs. NCBI nr
Match: XP_008458497.1 (PREDICTED: classical arabinogalactan protein 25 [Cucumis melo] >KAA0033458.1 classical arabinogalactan protein 25 [Cucumis melo var. makuwa])

HSP 1 Score: 131.0 bits (328), Expect = 6.3e-27
Identity = 82/115 (71.30%), Postives = 86/115 (74.78%), Query Frame = 0


Query: 1   MFFMAMPSPLLAL-------PISLFQQLSPEIAPLLPSTGGKIPSAT-DSIPTIPSNPSP 60
           M FMA  SPLLAL       P S FQ+LSPEIAPLLPSTG KIPSAT  SIPTIPSNPSP
Sbjct: 12  MVFMA--SPLLALPSVPNPKPSSPFQELSPEIAPLLPSTGDKIPSATGSSIPTIPSNPSP 71

Query: 61  PNPDDFEASAPDSSALSPFGFPGSSALPKFFPSYSNW-LLLLTGLAVFPFSLHFY 107
           PNPDDFEA  PDSSALSPFG PGS A P   P YSNW LLLL GLA+  FS+H +
Sbjct: 72  PNPDDFEALGPDSSALSPFGLPGSFAPPNSLPCYSNWLLLLLNGLALLAFSMHLH 124

[Close]

BLAST of HG10010319.1 vs. NCBI nr
Match: XP_011656664.1 (classical arabinogalactan protein 25 [Cucumis sativus] >KGN46189.1 hypothetical protein Csa_005749 [Cucumis sativus])

HSP 1 Score: 131.0 bits (328), Expect = 6.3e-27
Identity = 82/115 (71.30%), Postives = 86/115 (74.78%), Query Frame = 0


Query: 1   MFFMAMPSPLLAL-------PISLFQQLSPEIAPLLPSTGGKIPSAT-DSIPTIPSNPSP 60
           M FMA  SPLLAL       P S FQ+LSPEIAPLLPSTG KIPSAT  SIPTIPSNPSP
Sbjct: 12  MVFMA--SPLLALPSVPNPKPSSPFQELSPEIAPLLPSTGDKIPSATGSSIPTIPSNPSP 71

Query: 61  PNPDDFEASAPDSSALSPFGFPGSSALPKFFPSYSNW-LLLLTGLAVFPFSLHFY 107
           PNPDDFEA  PDSSALSPFG PGS A P   P YSNW LLLL GLA+  FS+H +
Sbjct: 72  PNPDDFEALGPDSSALSPFGLPGSFAPPNSLPCYSNWLLLLLNGLALLTFSMHLH 124

[Close]

BLAST of HG10010319.1 vs. NCBI nr
Match: XP_023547783.1 (classical arabinogalactan protein 25-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 128.3 bits (321), Expect = 4.1e-26
Identity = 77/113 (68.14%), Postives = 85/113 (75.22%), Query Frame = 0


Query: 1   MFFMAMPSPLLALP-------ISLFQQLSPEIAPLLPSTGGKIPSATDSIPTIPSNPSPP 60
           M FMA  SPLLALP        S FQ+LSP+IAPLLPS+GG IPSA+ SIPTIPSNPSPP
Sbjct: 12  MAFMA--SPLLALPSLPNPKLSSSFQELSPDIAPLLPSSGGSIPSASGSIPTIPSNPSPP 71

Query: 61  NPDDFEASAPDSSALSPFGFPGSSALPKFFPSYSNWLLLLTGLAVFPFSLHFY 107
           NPD+FEA  PDSSALSPFG PGS A PK  P YSN LLLLT L++  F LH +
Sbjct: 72  NPDEFEAPGPDSSALSPFGLPGSFAAPKPLPPYSNSLLLLTALSLHAFYLHLH 122

[Close]

BLAST of HG10010319.1 vs. NCBI nr
Match: KAG6575045.1 (hypothetical protein SDJN03_25684, partial [Cucurbita argyrosperma subsp. sororia] >KAG7013621.1 hypothetical protein SDJN02_23788, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 126.7 bits (317), Expect = 1.2e-25
Identity = 76/113 (67.26%), Postives = 84/113 (74.34%), Query Frame = 0


Query: 1   MFFMAMPSPLLALP-------ISLFQQLSPEIAPLLPSTGGKIPSATDSIPTIPSNPSPP 60
           M FMA  SPLLALP        S FQ+LSP+IAPLLPS+GG IPSA+ SIPTIPSNPSPP
Sbjct: 12  MAFMA--SPLLALPSLPNPKLSSSFQELSPDIAPLLPSSGGSIPSASGSIPTIPSNPSPP 71

Query: 61  NPDDFEASAPDSSALSPFGFPGSSALPKFFPSYSNWLLLLTGLAVFPFSLHFY 107
           NPD+FEA  PDSSALSP G PGS A PK  P YSN LLLLT L++  F LH +
Sbjct: 72  NPDEFEAPGPDSSALSPLGLPGSFAAPKSLPPYSNSLLLLTALSLHAFYLHLH 122

[Close]

BLAST of HG10010319.1 vs. NCBI nr
Match: XP_022958905.1 (classical arabinogalactan protein 25-like [Cucurbita moschata])

HSP 1 Score: 126.3 bits (316), Expect = 1.5e-25
Identity = 73/108 (67.59%), Postives = 81/108 (75.00%), Query Frame = 0


Query: 6   MPSPLLALP-------ISLFQQLSPEIAPLLPSTGGKIPSATDSIPTIPSNPSPPNPDDF 65
           M SPLLALP        S FQ+LSP+IAPLLPS+GG IPSA+ SIPTIPSNPSPPNPD+F
Sbjct: 15  MASPLLALPSLPNPKLSSSFQELSPDIAPLLPSSGGSIPSASGSIPTIPSNPSPPNPDEF 74

Query: 66  EASAPDSSALSPFGFPGSSALPKFFPSYSNWLLLLTGLAVFPFSLHFY 107
           EA  PDSSALSP G PGS A PK  P YSN LLLLT L++  F LH +
Sbjct: 75  EAPGPDSSALSPLGLPGSFAAPKPLPPYSNSLLLLTALSLHAFYLHLH 122

[Close]

BLAST of HG10010319.1 vs. ExPASy Swiss-Prot
Match: Q6NN00 (Classical arabinogalactan protein 25 OS=Arabidopsis thaliana OX=3702 GN=AGP25 PE=3 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 9.4e-10
Identity = 45/84 (53.57%), Postives = 53/84 (63.10%), Query Frame = 0


Query: 15  ISLFQQLSPEIAPLLPSTGGKIPSATDSIPTIPSNPSPPNPDDFEASAPDSSALSPFGFP 74
           ISL QQLSPEIAPLLPS G  +PS  D   TIPS+PSPP+PD  + S PD  A SPF  P
Sbjct: 27  ISLVQQLSPEIAPLLPSPGDALPS-DDGSGTIPSSPSPPDPDTNDGSYPDPLAFSPFASP 86

Query: 75  GSSALPKFFPSYSNWLLLLTGLAV 99
             S+ P   PS  +  +LL  L +
Sbjct: 87  PVSS-PSPPPSLPSAGVLLISLII 108

[Close]

BLAST of HG10010319.1 vs. ExPASy TrEMBL
Match: A0A5A7SSC0 (Classical arabinogalactan protein 25 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold111G001190 PE=4 SV=1)

HSP 1 Score: 131.0 bits (328), Expect = 3.0e-27
Identity = 82/115 (71.30%), Postives = 86/115 (74.78%), Query Frame = 0


Query: 1   MFFMAMPSPLLAL-------PISLFQQLSPEIAPLLPSTGGKIPSAT-DSIPTIPSNPSP 60
           M FMA  SPLLAL       P S FQ+LSPEIAPLLPSTG KIPSAT  SIPTIPSNPSP
Sbjct: 12  MVFMA--SPLLALPSVPNPKPSSPFQELSPEIAPLLPSTGDKIPSATGSSIPTIPSNPSP 71

Query: 61  PNPDDFEASAPDSSALSPFGFPGSSALPKFFPSYSNW-LLLLTGLAVFPFSLHFY 107
           PNPDDFEA  PDSSALSPFG PGS A P   P YSNW LLLL GLA+  FS+H +
Sbjct: 72  PNPDDFEALGPDSSALSPFGLPGSFAPPNSLPCYSNWLLLLLNGLALLAFSMHLH 124

[Close]

BLAST of HG10010319.1 vs. ExPASy TrEMBL
Match: A0A0A0KBF8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G067960 PE=4 SV=1)

HSP 1 Score: 131.0 bits (328), Expect = 3.0e-27
Identity = 82/115 (71.30%), Postives = 86/115 (74.78%), Query Frame = 0


Query: 1   MFFMAMPSPLLAL-------PISLFQQLSPEIAPLLPSTGGKIPSAT-DSIPTIPSNPSP 60
           M FMA  SPLLAL       P S FQ+LSPEIAPLLPSTG KIPSAT  SIPTIPSNPSP
Sbjct: 12  MVFMA--SPLLALPSVPNPKPSSPFQELSPEIAPLLPSTGDKIPSATGSSIPTIPSNPSP 71

Query: 61  PNPDDFEASAPDSSALSPFGFPGSSALPKFFPSYSNW-LLLLTGLAVFPFSLHFY 107
           PNPDDFEA  PDSSALSPFG PGS A P   P YSNW LLLL GLA+  FS+H +
Sbjct: 72  PNPDDFEALGPDSSALSPFGLPGSFAPPNSLPCYSNWLLLLLNGLALLTFSMHLH 124

[Close]

BLAST of HG10010319.1 vs. ExPASy TrEMBL
Match: A0A1S3C8K2 (classical arabinogalactan protein 25 OS=Cucumis melo OX=3656 GN=LOC103497889 PE=4 SV=1)

HSP 1 Score: 131.0 bits (328), Expect = 3.0e-27
Identity = 82/115 (71.30%), Postives = 86/115 (74.78%), Query Frame = 0


Query: 1   MFFMAMPSPLLAL-------PISLFQQLSPEIAPLLPSTGGKIPSAT-DSIPTIPSNPSP 60
           M FMA  SPLLAL       P S FQ+LSPEIAPLLPSTG KIPSAT  SIPTIPSNPSP
Sbjct: 12  MVFMA--SPLLALPSVPNPKPSSPFQELSPEIAPLLPSTGDKIPSATGSSIPTIPSNPSP 71

Query: 61  PNPDDFEASAPDSSALSPFGFPGSSALPKFFPSYSNW-LLLLTGLAVFPFSLHFY 107
           PNPDDFEA  PDSSALSPFG PGS A P   P YSNW LLLL GLA+  FS+H +
Sbjct: 72  PNPDDFEALGPDSSALSPFGLPGSFAPPNSLPCYSNWLLLLLNGLALLAFSMHLH 124

[Close]

BLAST of HG10010319.1 vs. ExPASy TrEMBL
Match: A0A6J1CBZ0 (classical arabinogalactan protein 25 OS=Momordica charantia OX=3673 GN=LOC111009825 PE=4 SV=1)

HSP 1 Score: 126.3 bits (316), Expect = 7.5e-26
Identity = 70/90 (77.78%), Postives = 73/90 (81.11%), Query Frame = 0


Query: 14  PISLFQQLSPEIAPLLPSTGGKIPSATDSIPTIPSNPSPPNPDDFEASAPDSSALSPFGF 73
           PIS FQ+LSPEIAPLLPS GG IPSAT SIPTIPSNPSPPNPD+FEA APD SALSPFG 
Sbjct: 50  PISPFQELSPEIAPLLPSPGGNIPSATGSIPTIPSNPSPPNPDEFEAPAPDPSALSPFGL 109

Query: 74  PGSSALPKFFPSYSNWLLLLTGLAVFPFSL 104
           PGS A P   P YSN LLLL G A+F FSL
Sbjct: 110 PGSFAPPTALPWYSNSLLLLAGSALFLFSL 139

[Close]

BLAST of HG10010319.1 vs. ExPASy TrEMBL
Match: A0A6J1H4T0 (classical arabinogalactan protein 25-like OS=Cucurbita moschata OX=3662 GN=LOC111460056 PE=4 SV=1)

HSP 1 Score: 126.3 bits (316), Expect = 7.5e-26
Identity = 73/108 (67.59%), Postives = 81/108 (75.00%), Query Frame = 0


Query: 6   MPSPLLALP-------ISLFQQLSPEIAPLLPSTGGKIPSATDSIPTIPSNPSPPNPDDF 65
           M SPLLALP        S FQ+LSP+IAPLLPS+GG IPSA+ SIPTIPSNPSPPNPD+F
Sbjct: 15  MASPLLALPSLPNPKLSSSFQELSPDIAPLLPSSGGSIPSASGSIPTIPSNPSPPNPDEF 74

Query: 66  EASAPDSSALSPFGFPGSSALPKFFPSYSNWLLLLTGLAVFPFSLHFY 107
           EA  PDSSALSP G PGS A PK  P YSN LLLLT L++  F LH +
Sbjct: 75  EAPGPDSSALSPLGLPGSFAAPKPLPPYSNSLLLLTALSLHAFYLHLH 122

[Close]

BLAST of HG10010319.1 vs. TAIR 10
Match: AT5G18690.1 (arabinogalactan protein 25 )

HSP 1 Score: 64.3 bits (155), Expect = 6.7e-11
Identity = 45/84 (53.57%), Postives = 53/84 (63.10%), Query Frame = 0


Query: 15  ISLFQQLSPEIAPLLPSTGGKIPSATDSIPTIPSNPSPPNPDDFEASAPDSSALSPFGFP 74
           ISL QQLSPEIAPLLPS G  +PS  D   TIPS+PSPP+PD  + S PD  A SPF  P
Sbjct: 27  ISLVQQLSPEIAPLLPSPGDALPS-DDGSGTIPSSPSPPDPDTNDGSYPDPLAFSPFASP 86

Query: 75  GSSALPKFFPSYSNWLLLLTGLAV 99
             S+ P   PS  +  +LL  L +
Sbjct: 87  PVSS-PSPPPSLPSAGVLLISLII 108

The following BLAST results are available for this feature:

BLAST of HG10010319.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008458497.1	6.3e-27	71.30	PREDICTED: classical arabinogalactan protein 25 [Cucumis melo] >KAA0033458.1 cla...	[more]
XP_011656664.1	6.3e-27	71.30	classical arabinogalactan protein 25 [Cucumis sativus] >KGN46189.1 hypothetical ...	[more]
XP_023547783.1	4.1e-26	68.14	classical arabinogalactan protein 25-like [Cucurbita pepo subsp. pepo]	[more]
KAG6575045.1	1.2e-25	67.26	hypothetical protein SDJN03_25684, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022958905.1	1.5e-25	67.59	classical arabinogalactan protein 25-like [Cucurbita moschata]	[more]

BLAST of HG10010319.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q6NN00	9.4e-10	53.57	Classical arabinogalactan protein 25 OS=Arabidopsis thaliana OX=3702 GN=AGP25 PE...	[more]

BLAST of HG10010319.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SSC0	3.0e-27	71.30	Classical arabinogalactan protein 25 OS=Cucumis melo var. makuwa OX=1194695 GN=E...	[more]
A0A0A0KBF8	3.0e-27	71.30	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G067960 PE=4 SV=1	[more]
A0A1S3C8K2	3.0e-27	71.30	classical arabinogalactan protein 25 OS=Cucumis melo OX=3656 GN=LOC103497889 PE=...	[more]
A0A6J1CBZ0	7.5e-26	77.78	classical arabinogalactan protein 25 OS=Momordica charantia OX=3673 GN=LOC111009...	[more]
A0A6J1H4T0	7.5e-26	67.59	classical arabinogalactan protein 25-like OS=Cucurbita moschata OX=3662 GN=LOC11...	[more]

BLAST of HG10010319.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G18690.1	6.7e-11	53.57	arabinogalactan protein 25	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 32..66
None	No IPR available	PANTHER	PTHR35725:SF3	CLASSICAL ARABINOGALACTAN PROTEIN 25	coord: 12..93
IPR039346	Classical arabinogalactan protein 25/26	PANTHER	PTHR35725	CLASSICAL ARABINOGALACTAN PROTEIN 26	coord: 12..93

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
HG10010319	HG10010319	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
HG10010319.1-cds	HG10010319.1-cds-Chr06:21067963..21068283	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
HG10010319.1	HG10010319.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane