HG10009595.1 (mRNA) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10009595.1
Type	mRNA
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	Unknown protein
Location	Chr06: 7940719 .. 7940985 (-)
Sequence length	267
RNA-Seq Expression	HG10009595.1
Synteny	HG10009595.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAACTCAACTCTCATCATCACCAATGACCACCTCCAACGACCAACTTTGGCGACCACCTTCGACGCTCAATTTTGGCAACCACCTCTGACGACCAATTCCGGCGACTACCTCCAACAGCCAACTCCGGCAACCACCGCTTGCGGCCAACTTCAGCAACATCCAACCATCAGTATTGATGGCCAACTCCAGCAACCACCGCCTACGACCAACTCTAACAACATCCAACCACCACTATTGATGGCCAACTTTGGTGGCCTTCGATGA

mRNA sequence

ATGAACTCAACTCTCATCATCACCAATGACCACCTCCAACGACCAACTTTGGCGACCACCTTCGACGCTCAATTTTGGCAACCACCTCTGACGACCAATTCCGGCGACTACCTCCAACAGCCAACTCCGGCAACCACCGCTTGCGGCCAACTTCAGCAACATCCAACCATCAGTATTGATGGCCAACTCCAGCAACCACCGCCTACGACCAACTCTAACAACATCCAACCACCACTATTGATGGCCAACTTTGGTGGCCTTCGATGA

Coding sequence (CDS)

ATGAACTCAACTCTCATCATCACCAATGACCACCTCCAACGACCAACTTTGGCGACCACCTTCGACGCTCAATTTTGGCAACCACCTCTGACGACCAATTCCGGCGACTACCTCCAACAGCCAACTCCGGCAACCACCGCTTGCGGCCAACTTCAGCAACATCCAACCATCAGTATTGATGGCCAACTCCAGCAACCACCGCCTACGACCAACTCTAACAACATCCAACCACCACTATTGATGGCCAACTTTGGTGGCCTTCGATGA

Protein sequence

MNSTLIITNDHLQRPTLATTFDAQFWQPPLTTNSGDYLQQPTPATTACGQLQQHPTISIDGQLQQPPPTTNSNNIQPPLLMANFGGLR

Homology

[Close]

BLAST of HG10009595.1 vs. NCBI nr
Match: WP_217833371.1 (hypothetical protein, partial [Synechococcus sp. PCC 7002])

HSP 1 Score: 72.0 bits (175), Expect = 2.9e-09
Identity = 38/73 (52.05%), Postives = 45/73 (61.64%), Query Frame = 0


Query: 11 HLQRPTLATTFDAQFWQPPLTTNSGDYLQQPTPATTACGQLQQHPTISIDGQLQQPPPTT 70
          HL+RPT  TTFD Q  + PL TNS +YL++  PATT+            D  LQQPPP  
Sbjct: 1  HLRRPTFVTTFDGQLRRLPLMTNSCNYLRRSAPATTS------------DSHLQQPPPIA 60

Query: 71 NSNNIQPPLLMAN 84
          NS+NIQPPLL  N
Sbjct: 61 NSDNIQPPLLTGN 61

[Close]

BLAST of HG10009595.1 vs. NCBI nr
Match: XP_040650227.1 (uncharacterized protein PGRI_090840 [Penicillium griseofulvum] >KXG51691.1 hypothetical protein PGRI_090840 [Penicillium griseofulvum])

HSP 1 Score: 53.9 bits (128), Expect = 8.1e-04
Identity = 29/69 (42.03%), Postives = 44/69 (63.77%), Query Frame = 0


Query: 12 LQRPTLATTFDAQFWQPPLTTNSGDYLQQPTPATTACGQLQQHPTISIDGQLQQPPPTTN 71
          L++P   T+ +    QPP TT+S + L+QP   T++   L+Q P  S + +L+QPP TT+
Sbjct: 11 LEQPPRTTSSNNLLEQPPRTTSSNNLLEQPPRTTSSNNLLEQPPPTSSNNRLEQPPRTTS 70

Query: 72 SNNI--QPP 79
          SNN+  QPP
Sbjct: 71 SNNLLEQPP 79

[Close]

BLAST of HG10009595.1 vs. ExPASy TrEMBL
Match: A0A135LRX7 (Uncharacterized protein OS=Penicillium patulum OX=5078 GN=PGRI_090840 PE=4 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 3.9e-04
Identity = 29/69 (42.03%), Postives = 44/69 (63.77%), Query Frame = 0


Query: 12 LQRPTLATTFDAQFWQPPLTTNSGDYLQQPTPATTACGQLQQHPTISIDGQLQQPPPTTN 71
          L++P   T+ +    QPP TT+S + L+QP   T++   L+Q P  S + +L+QPP TT+
Sbjct: 11 LEQPPRTTSSNNLLEQPPRTTSSNNLLEQPPRTTSSNNLLEQPPPTSSNNRLEQPPRTTS 70

Query: 72 SNNI--QPP 79
          SNN+  QPP
Sbjct: 71 SNNLLEQPP 79

The following BLAST results are available for this feature:

BLAST of HG10009595.1 vs. NCBI nr


Match Name	E-value	Identity	Description
WP_217833371.1	2.9e-09	52.05	hypothetical protein, partial [Synechococcus sp. PCC 7002]	[more]
XP_040650227.1	8.1e-04	42.03	uncharacterized protein PGRI_090840 [Penicillium griseofulvum] >KXG51691.1 hypot...	[more]

BLAST of HG10009595.1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of HG10009595.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A135LRX7	3.9e-04	42.03	Uncharacterized protein OS=Penicillium patulum OX=5078 GN=PGRI_090840 PE=4 SV=1	[more]

BLAST of HG10009595.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 59..88
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 59..79

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
HG10009595	HG10009595	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
HG10009595.1-cds	HG10009595.1-cds-Chr06:7940719..7940985	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
HG10009595.1	HG10009595.1-protein	polypeptide