HG10009595 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview
NameHG10009595
Typegene
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionUnknown protein
LocationChr06: 7940719 .. 7940985 (-)
RNA-Seq ExpressionHG10009595
SyntenyHG10009595
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAACTCAACTCTCATCATCACCAATGACCACCTCCAACGACCAACTTTGGCGACCACCTTCGACGCTCAATTTTGGCAACCACCTCTGACGACCAATTCCGGCGACTACCTCCAACAGCCAACTCCGGCAACCACCGCTTGCGGCCAACTTCAGCAACATCCAACCATCAGTATTGATGGCCAACTCCAGCAACCACCGCCTACGACCAACTCTAACAACATCCAACCACCACTATTGATGGCCAACTTTGGTGGCCTTCGATGA

mRNA sequence

ATGAACTCAACTCTCATCATCACCAATGACCACCTCCAACGACCAACTTTGGCGACCACCTTCGACGCTCAATTTTGGCAACCACCTCTGACGACCAATTCCGGCGACTACCTCCAACAGCCAACTCCGGCAACCACCGCTTGCGGCCAACTTCAGCAACATCCAACCATCAGTATTGATGGCCAACTCCAGCAACCACCGCCTACGACCAACTCTAACAACATCCAACCACCACTATTGATGGCCAACTTTGGTGGCCTTCGATGA

Coding sequence (CDS)

ATGAACTCAACTCTCATCATCACCAATGACCACCTCCAACGACCAACTTTGGCGACCACCTTCGACGCTCAATTTTGGCAACCACCTCTGACGACCAATTCCGGCGACTACCTCCAACAGCCAACTCCGGCAACCACCGCTTGCGGCCAACTTCAGCAACATCCAACCATCAGTATTGATGGCCAACTCCAGCAACCACCGCCTACGACCAACTCTAACAACATCCAACCACCACTATTGATGGCCAACTTTGGTGGCCTTCGATGA

Protein sequence

MNSTLIITNDHLQRPTLATTFDAQFWQPPLTTNSGDYLQQPTPATTACGQLQQHPTISIDGQLQQPPPTTNSNNIQPPLLMANFGGLR
Homology
BLAST of HG10009595 vs. NCBI nr
Match: WP_217833371.1 (hypothetical protein, partial [Synechococcus sp. PCC 7002])

HSP 1 Score: 72.0 bits (175), Expect = 2.9e-09
Identity = 38/73 (52.05%), Postives = 45/73 (61.64%), Query Frame = 0

Query: 11 HLQRPTLATTFDAQFWQPPLTTNSGDYLQQPTPATTACGQLQQHPTISIDGQLQQPPPTT 70
          HL+RPT  TTFD Q  + PL TNS +YL++  PATT+            D  LQQPPP  
Sbjct: 1  HLRRPTFVTTFDGQLRRLPLMTNSCNYLRRSAPATTS------------DSHLQQPPPIA 60

Query: 71 NSNNIQPPLLMAN 84
          NS+NIQPPLL  N
Sbjct: 61 NSDNIQPPLLTGN 61

BLAST of HG10009595 vs. NCBI nr
Match: XP_040650227.1 (uncharacterized protein PGRI_090840 [Penicillium griseofulvum] >KXG51691.1 hypothetical protein PGRI_090840 [Penicillium griseofulvum])

HSP 1 Score: 53.9 bits (128), Expect = 8.1e-04
Identity = 29/69 (42.03%), Postives = 44/69 (63.77%), Query Frame = 0

Query: 12 LQRPTLATTFDAQFWQPPLTTNSGDYLQQPTPATTACGQLQQHPTISIDGQLQQPPPTTN 71
          L++P   T+ +    QPP TT+S + L+QP   T++   L+Q P  S + +L+QPP TT+
Sbjct: 11 LEQPPRTTSSNNLLEQPPRTTSSNNLLEQPPRTTSSNNLLEQPPPTSSNNRLEQPPRTTS 70

Query: 72 SNNI--QPP 79
          SNN+  QPP
Sbjct: 71 SNNLLEQPP 79

BLAST of HG10009595 vs. ExPASy TrEMBL
Match: A0A135LRX7 (Uncharacterized protein OS=Penicillium patulum OX=5078 GN=PGRI_090840 PE=4 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 3.9e-04
Identity = 29/69 (42.03%), Postives = 44/69 (63.77%), Query Frame = 0

Query: 12 LQRPTLATTFDAQFWQPPLTTNSGDYLQQPTPATTACGQLQQHPTISIDGQLQQPPPTTN 71
          L++P   T+ +    QPP TT+S + L+QP   T++   L+Q P  S + +L+QPP TT+
Sbjct: 11 LEQPPRTTSSNNLLEQPPRTTSSNNLLEQPPRTTSSNNLLEQPPPTSSNNRLEQPPRTTS 70

Query: 72 SNNI--QPP 79
          SNN+  QPP
Sbjct: 71 SNNLLEQPP 79

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
WP_217833371.12.9e-0952.05hypothetical protein, partial [Synechococcus sp. PCC 7002][more]
XP_040650227.18.1e-0442.03uncharacterized protein PGRI_090840 [Penicillium griseofulvum] >KXG51691.1 hypot... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A135LRX73.9e-0442.03Uncharacterized protein OS=Penicillium patulum OX=5078 GN=PGRI_090840 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 59..88
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 59..79

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
HG10009595.1HG10009595.1mRNA