HG10004306.1 (mRNA) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10004306.1
Type	mRNA
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	ylmG homolog protein 2, chloroplastic
Location	Chr08: 15845487 .. 15847408 (+)
Sequence length	762
RNA-Seq Expression	HG10004306.1
Synteny	HG10004306.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACTCCGGACGAGCCTTCACTTCTAAACACTAGGCGAAGTTCTACGGCTTTCAACTTCTTTCCAAACTGCATATCCTCATTCTCACCCGCATTTTCTCAAACACCTTCCGGAGCATCCAGGAGAAGGCACGCCGAATTCATCCCTCCATGTAATTTTCTTCGCGACCTCCATGAATCTTTCGCGTCAACTACTGAAAGCTGCATTAGATTTTTTGACTCATTGGCTTCTGAAAATCCATTTCTTAATAAATTGCTCTCCTTGCCTTCTGAGTTCCAGAGTTTTCGTCACCAGGTAACTAACTGCAACTGTATCTTGACGGTTTCCTGAAATTCTGATTCGTGTTTCTAATGCAATTACTCCGTTTAGTACTTCCGTCTGTTTGTACAGTTTGATTTCCATTTAGAGTATGACCTGCTTCTTACGGTTAATTTTTCCCGGGGGTTTCAATTTTCTAATTTTTGCAGTAATTTGTGTTGAATTCTATTTCAGATCCACGGTATGAACTCCAGGAATTTCCGAGCTCTCTCCAGTCACAATTTTGCTGCAGTTTTGCCGGGGGATTCTATGGCAGGACTTGTCGTCGCTAATGGTATTCAAAATTTCTTGAGCCTCTACAATACACTGTTGGTCGTCAGGCTAGTTTTGACTTGGTTTCCGAACACACCTCCCGCCATTGTTAGTCCTCTAAGGTAACTTTTATTTGTTTTTGACATTACTATTAAAAAAAGAAGAAAGAAGAAAGACGTTTTCATAATGATTGATCGTGAGCCTGGAATGAGATTTCTGAACTGAACATAGCAGCAAGCTTTTATATCCTCACAGCTTGAAAGAGGGAAATATTTATAGTGGCTGTTTGGTCAGAATGATTTAGAAGTTGAAAGATGAAACTGAATGTCTAAATTTCTAGCTCTGATGATCCAACTCATATTCAAATTCACACCACTGATTCAGTAATATGTCATCTTTTGCTTCAGAAACAGATCTTAAAAACTGCTGTCAAACAAGTATTATGGACAAAAAAAGGCCCAAGAAAACTTTTTCTTATATATTAGAAGACAATAATTAGTTTATAAGAGTCTGCTTGGAATGTTTTTGTGCTTAACATGTATACATATATTTTTAACTTCAAAATTATTTCTTAAAAAGCAATTTTAAGTACAGGTCATTTAAAAAAAATACTTTAAAAATAATTTCAAATGGACTCTAGTGGGTCAAACAACCTCGTCGTCATGGATACCTTCATATATCTTTGTATCTGTTAGATCTAGATGATATAAGATCAAATTTATCTTCACCCATCAACTTACCTTTTTGGGTCAATTGGCGAGTTAACAGTATCTACCATCTATTGGGTGTTGTTATCTAATGGGGTGCCCTTGTTTTAGTTTGTCTTAGATTAAAAAACATACAAAAAAGAAAATAAAAAATAGAATTTTTAAAATAGAAAAATAAGAAAAACTATTTACATAAAATAGTCAAATTTTTAGATAGTTGTGATAGACGCTGATAGAAGTCTATCACTGATAGATACTTATAGAAGTCTATCAATGTCTATCAGTGTTTTAAAAAAAACGATTTTGAAACAATATATATGTAGAGAAAGTTGCAATGTAAAATTTTGTGTAATTGGCTTGGTTGGTTTCTCTTTCAGCACACTATGCGATCCATATTTGAACATATTTCGTGGGATTATCCCACCTCTTGGAGGGACACTTGATTTGTCTCCAATATTGGCATTCCTGGTCTTAAACGCCTTTACCAGCACTGCCGCTGCACTTCCTGCTGAACTTCCAGCCCCAAATTCGTCTCTTGCAAATCCTACTCCTTTAAAAGGCTCTGTTGATCTTACCACGTCACAAAAGAAATGGATGAGAAGGCTTCAGGGAAGTGGAAAAAATAATGCTGATGCTGCTCGATAG

mRNA sequence

ATGACTCCGGACGAGCCTTCACTTCTAAACACTAGGCGAAGTTCTACGGCTTTCAACTTCTTTCCAAACTGCATATCCTCATTCTCACCCGCATTTTCTCAAACACCTTCCGGAGCATCCAGGAGAAGGCACGCCGAATTCATCCCTCCATGTAATTTTCTTCGCGACCTCCATGAATCTTTCGCGTCAACTACTGAAAGCTGCATTAGATTTTTTGACTCATTGGCTTCTGAAAATCCATTTCTTAATAAATTGCTCTCCTTGCCTTCTGAGTTCCAGAGTTTTCGTCACCAGATCCACGGTATGAACTCCAGGAATTTCCGAGCTCTCTCCAGTCACAATTTTGCTGCAGTTTTGCCGGGGGATTCTATGGCAGGACTTGTCGTCGCTAATGGTATTCAAAATTTCTTGAGCCTCTACAATACACTGTTGGTCGTCAGGCTAGTTTTGACTTGGTTTCCGAACACACCTCCCGCCATTGTTAGTCCTCTAAGCACACTATGCGATCCATATTTGAACATATTTCGTGGGATTATCCCACCTCTTGGAGGGACACTTGATTTGTCTCCAATATTGGCATTCCTGGTCTTAAACGCCTTTACCAGCACTGCCGCTGCACTTCCTGCTGAACTTCCAGCCCCAAATTCGTCTCTTGCAAATCCTACTCCTTTAAAAGGCTCTGTTGATCTTACCACGTCACAAAAGAAATGGATGAGAAGGCTTCAGGGAAGTGGAAAAAATAATGCTGATGCTGCTCGATAG

Coding sequence (CDS)

ATGACTCCGGACGAGCCTTCACTTCTAAACACTAGGCGAAGTTCTACGGCTTTCAACTTCTTTCCAAACTGCATATCCTCATTCTCACCCGCATTTTCTCAAACACCTTCCGGAGCATCCAGGAGAAGGCACGCCGAATTCATCCCTCCATGTAATTTTCTTCGCGACCTCCATGAATCTTTCGCGTCAACTACTGAAAGCTGCATTAGATTTTTTGACTCATTGGCTTCTGAAAATCCATTTCTTAATAAATTGCTCTCCTTGCCTTCTGAGTTCCAGAGTTTTCGTCACCAGATCCACGGTATGAACTCCAGGAATTTCCGAGCTCTCTCCAGTCACAATTTTGCTGCAGTTTTGCCGGGGGATTCTATGGCAGGACTTGTCGTCGCTAATGGTATTCAAAATTTCTTGAGCCTCTACAATACACTGTTGGTCGTCAGGCTAGTTTTGACTTGGTTTCCGAACACACCTCCCGCCATTGTTAGTCCTCTAAGCACACTATGCGATCCATATTTGAACATATTTCGTGGGATTATCCCACCTCTTGGAGGGACACTTGATTTGTCTCCAATATTGGCATTCCTGGTCTTAAACGCCTTTACCAGCACTGCCGCTGCACTTCCTGCTGAACTTCCAGCCCCAAATTCGTCTCTTGCAAATCCTACTCCTTTAAAAGGCTCTGTTGATCTTACCACGTCACAAAAGAAATGGATGAGAAGGCTTCAGGGAAGTGGAAAAAATAATGCTGATGCTGCTCGATAG

Protein sequence

MTPDEPSLLNTRRSSTAFNFFPNCISSFSPAFSQTPSGASRRRHAEFIPPCNFLRDLHESFASTTESCIRFFDSLASENPFLNKLLSLPSEFQSFRHQIHGMNSRNFRALSSHNFAAVLPGDSMAGLVVANGIQNFLSLYNTLLVVRLVLTWFPNTPPAIVSPLSTLCDPYLNIFRGIIPPLGGTLDLSPILAFLVLNAFTSTAAALPAELPAPNSSLANPTPLKGSVDLTTSQKKWMRRLQGSGKNNADAAR

Homology

[Close]

BLAST of HG10004306.1 vs. NCBI nr
Match: XP_038884266.1 (ylmG homolog protein 2, chloroplastic [Benincasa hispida])

HSP 1 Score: 468.4 bits (1204), Expect = 3.9e-128
Identity = 236/253 (93.28%), Postives = 246/253 (97.23%), Query Frame = 0


Query: 1   MTPDEPSLLNTRRSSTAFNFFPNCISSFSPAFSQTPSGASRRRHAEFIPPCNFLRDLHES 60
           MTPDE SLLN RR+STAFNFFPNCISSFSPAFSQTPSGASRRR+AEF+PPCNFLRD+H+S
Sbjct: 1   MTPDESSLLNPRRTSTAFNFFPNCISSFSPAFSQTPSGASRRRNAEFVPPCNFLRDVHDS 60

Query: 61  FASTTESCIRFFDSLASENPFLNKLLSLPSEFQSFRHQIHGMNSRNFRALSSHNFAAVLP 120
           FASTTESCIRFF SLASENPFL+KLLSLPSEFQSFRHQIHGMNSRNFRALSSHNFAAVLP
Sbjct: 61  FASTTESCIRFFHSLASENPFLHKLLSLPSEFQSFRHQIHGMNSRNFRALSSHNFAAVLP 120

Query: 121 GDSMAGLVVANGIQNFLSLYNTLLVVRLVLTWFPNTPPAIVSPLSTLCDPYLNIFRGIIP 180
           GDS+AGLVVANG+QNFLSLYNTLLVVRLVLTWFPNTPPAIVSPLSTLCDPYLNIFRGIIP
Sbjct: 121 GDSVAGLVVANGVQNFLSLYNTLLVVRLVLTWFPNTPPAIVSPLSTLCDPYLNIFRGIIP 180

Query: 181 PLGGTLDLSPILAFLVLNAFTSTAAALPAELPAPNSSLANPTPLKGSVDLTTSQKKWMRR 240
           PLGGTLDLSPILAFLVLNAFTSTAAALPAELPAPNSSLANPTPL+GSVDL  SQKKWMRR
Sbjct: 181 PLGGTLDLSPILAFLVLNAFTSTAAALPAELPAPNSSLANPTPLEGSVDLPASQKKWMRR 240

Query: 241 LQGSGKNNADAAR 254
           LQGSGK  ADAA+
Sbjct: 241 LQGSGKKKADAAQ 253

[Close]

BLAST of HG10004306.1 vs. NCBI nr
Match: XP_008445540.1 (PREDICTED: ylmG homolog protein 2, chloroplastic [Cucumis melo] >KAA0064706.1 ylmG-like protein 2 [Cucumis melo var. makuwa] >TYK00724.1 ylmG-like protein 2 [Cucumis melo var. makuwa])

HSP 1 Score: 451.8 bits (1161), Expect = 3.8e-123
Identity = 231/251 (92.03%), Postives = 236/251 (94.02%), Query Frame = 0


Query: 1   MTPDEPSLLNTRRSSTAFNFFPNCISSFSPAFSQTPSGASRRRHAEFIPPCNFLRDLHES 60
           MTP E SL N +R+STAFNFFPNCISSFSPAFSQTPSG SRRR  EF  PCNFLRDLHES
Sbjct: 1   MTPHESSLQNPKRTSTAFNFFPNCISSFSPAFSQTPSGPSRRRQPEFASPCNFLRDLHES 60

Query: 61  FASTTESCIRFFDSLASENPFLNKLLSLPSEFQSFRHQIHGMNSRNFRALSSHNFAAVLP 120
           FASTTESCIR F S ASENPFL+KLLSLPSEFQSFR QIH MNSRNFRALSSHNFAAVLP
Sbjct: 61  FASTTESCIRLFHSFASENPFLHKLLSLPSEFQSFRFQIHSMNSRNFRALSSHNFAAVLP 120

Query: 121 GDSMAGLVVANGIQNFLSLYNTLLVVRLVLTWFPNTPPAIVSPLSTLCDPYLNIFRGIIP 180
           GDSMAGLVVANGIQNFLSLYNTLLVVRLVLTWFPNTPPAIVSPLSTLCDPYLNIFRGIIP
Sbjct: 121 GDSMAGLVVANGIQNFLSLYNTLLVVRLVLTWFPNTPPAIVSPLSTLCDPYLNIFRGIIP 180

Query: 181 PLGGTLDLSPILAFLVLNAFTSTAAALPAELPAPNSSLANPTPLKGSVDLTTSQKKWMRR 240
           PLGGTLDLSPILAFLVLNAFTSTAAALPAELPAPNSSLANP PL+GSVDLT+SQKKWMRR
Sbjct: 181 PLGGTLDLSPILAFLVLNAFTSTAAALPAELPAPNSSLANPNPLEGSVDLTSSQKKWMRR 240

Query: 241 LQGSGKNNADA 252
           LQGSGKNNADA
Sbjct: 241 LQGSGKNNADA 251

[Close]

BLAST of HG10004306.1 vs. NCBI nr
Match: XP_004144214.1 (ylmG homolog protein 2, chloroplastic [Cucumis sativus] >KGN47583.1 hypothetical protein Csa_019073 [Cucumis sativus])

HSP 1 Score: 446.0 bits (1146), Expect = 2.1e-121
Identity = 227/253 (89.72%), Postives = 237/253 (93.68%), Query Frame = 0


Query: 1   MTPDEPSLLNTRRSSTAFNFFPNCISSFSPAFSQTPSGASRRRHAEFIPPCNFLRDLHES 60
           MTP + SL N +++STAFNFFPNCISSFSPAFSQTPSG SRRR  EF PPCNFLR LHES
Sbjct: 1   MTPHDSSLQNPKQTSTAFNFFPNCISSFSPAFSQTPSGPSRRRQLEFAPPCNFLRHLHES 60

Query: 61  FASTTESCIRFFDSLASENPFLNKLLSLPSEFQSFRHQIHGMNSRNFRALSSHNFAAVLP 120
           FASTTESCIR F SLASENPFL+KLLSLPSEF  FR+QIHGMNS NFRALSSHNFAAVLP
Sbjct: 61  FASTTESCIRLFHSLASENPFLHKLLSLPSEFHRFRYQIHGMNSMNFRALSSHNFAAVLP 120

Query: 121 GDSMAGLVVANGIQNFLSLYNTLLVVRLVLTWFPNTPPAIVSPLSTLCDPYLNIFRGIIP 180
           GDSMAGLVVANGIQNFLSLYNTLLVVRLVLTWFPNTPPAIVSPLSTLCDPYLNIFRGIIP
Sbjct: 121 GDSMAGLVVANGIQNFLSLYNTLLVVRLVLTWFPNTPPAIVSPLSTLCDPYLNIFRGIIP 180

Query: 181 PLGGTLDLSPILAFLVLNAFTSTAAALPAELPAPNSSLANPTPLKGSVDLTTSQKKWMRR 240
           PLGGTLDLSPILAFLVLNAFTSTAAALPAELPAPNSSLANP PLKGSVDLT+SQKKWM+R
Sbjct: 181 PLGGTLDLSPILAFLVLNAFTSTAAALPAELPAPNSSLANPNPLKGSVDLTSSQKKWMKR 240

Query: 241 LQGSGKNNADAAR 254
           LQGS KNNADA++
Sbjct: 241 LQGSEKNNADASQ 253

[Close]

BLAST of HG10004306.1 vs. NCBI nr
Match: KAG7029531.1 (YlmG-like protein 2, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 442.6 bits (1137), Expect = 2.3e-120
Identity = 223/253 (88.14%), Postives = 234/253 (92.49%), Query Frame = 0


Query: 1   MTPDEPSLLNTRRSSTAFNFFPNCISSFSPAFSQTPSGASRRRHAEFIPPCNFLRDLHES 60
           MTPDE S+LN RRSSTAF+FFPNCISSFSPAFSQTP GASRRRH +F+PPC FLRDLHES
Sbjct: 1   MTPDESSVLNPRRSSTAFSFFPNCISSFSPAFSQTPFGASRRRHVDFVPPCKFLRDLHES 60

Query: 61  FASTTESCIRFFDSLASENPFLNKLLSLPSEFQSFRHQIHGMNSRNFRALSSHNFAAVLP 120
           FA T E CI FF SLASENPFLNKL+SL SE QSF HQIHGMNSRNFRALSSHNFAAVLP
Sbjct: 61  FALTAEKCIVFFHSLASENPFLNKLMSLSSELQSFHHQIHGMNSRNFRALSSHNFAAVLP 120

Query: 121 GDSMAGLVVANGIQNFLSLYNTLLVVRLVLTWFPNTPPAIVSPLSTLCDPYLNIFRGIIP 180
           GDS+AGL+V NGIQNFLS+YNTLLVVRLVLTWFPNTPPAIVSPLSTLCDPYLNIFRGIIP
Sbjct: 121 GDSVAGLLVTNGIQNFLSIYNTLLVVRLVLTWFPNTPPAIVSPLSTLCDPYLNIFRGIIP 180

Query: 181 PLGGTLDLSPILAFLVLNAFTSTAAALPAELPAPNSSLANPTPLKGSVDLTTSQKKWMRR 240
           PLGGTLDLSPILAFLVLNAFTSTAAALPAELP PNSSLAN TP KGS DLTTSQKKW+RR
Sbjct: 181 PLGGTLDLSPILAFLVLNAFTSTAAALPAELPVPNSSLANATPSKGSFDLTTSQKKWIRR 240

Query: 241 LQGSGKNNADAAR 254
           LQGSG+N AD+AR
Sbjct: 241 LQGSGENKADSAR 253

[Close]

BLAST of HG10004306.1 vs. NCBI nr
Match: XP_022961827.1 (ylmG homolog protein 2, chloroplastic [Cucurbita moschata])

HSP 1 Score: 439.9 bits (1130), Expect = 1.5e-119
Identity = 221/253 (87.35%), Postives = 234/253 (92.49%), Query Frame = 0


Query: 1   MTPDEPSLLNTRRSSTAFNFFPNCISSFSPAFSQTPSGASRRRHAEFIPPCNFLRDLHES 60
           MTPDE S+LN RRSSTAF+FFPNCISSFSPAFSQTP GASRRRH +F+PPC FLRDLHES
Sbjct: 1   MTPDESSVLNPRRSSTAFSFFPNCISSFSPAFSQTPFGASRRRHVDFVPPCKFLRDLHES 60

Query: 61  FASTTESCIRFFDSLASENPFLNKLLSLPSEFQSFRHQIHGMNSRNFRALSSHNFAAVLP 120
           FA T E CI FF SLASENPFLNKL+SL SE QSF HQIHG+NSRNFRALSSHNFAAVLP
Sbjct: 61  FALTAEKCIVFFHSLASENPFLNKLMSLSSELQSFHHQIHGLNSRNFRALSSHNFAAVLP 120

Query: 121 GDSMAGLVVANGIQNFLSLYNTLLVVRLVLTWFPNTPPAIVSPLSTLCDPYLNIFRGIIP 180
           GDS+AGL+V NGIQNFLS+YNTLLVVRLVLTWFPNTPPAIVSPLSTLCDPYLNIFRGIIP
Sbjct: 121 GDSVAGLLVTNGIQNFLSIYNTLLVVRLVLTWFPNTPPAIVSPLSTLCDPYLNIFRGIIP 180

Query: 181 PLGGTLDLSPILAFLVLNAFTSTAAALPAELPAPNSSLANPTPLKGSVDLTTSQKKWMRR 240
           PLGGTLDLSPILAFLVLNAFTSTAAALPAELP PNSSLAN TP KGS DLT+SQKKW+RR
Sbjct: 181 PLGGTLDLSPILAFLVLNAFTSTAAALPAELPVPNSSLANATPSKGSFDLTSSQKKWIRR 240

Query: 241 LQGSGKNNADAAR 254
           LQGSG+N AD+AR
Sbjct: 241 LQGSGENKADSAR 253

[Close]

BLAST of HG10004306.1 vs. ExPASy Swiss-Prot
Match: Q9C595 (YlmG homolog protein 2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=YLMG2 PE=2 SV=1)

HSP 1 Score: 221.9 bits (564), Expect = 8.4e-57
Identity = 126/224 (56.25%), Postives = 154/224 (68.75%), Query Frame = 0


Query: 22  PNCISSFSPAFSQTPSGASRRRHAEFIPP----CNFLRDLHESFASTTESCIRFFDSLAS 81
           PN   S S AF+QTP   S + +   +PP       ++D H+S  S TE    F  SLAS
Sbjct: 22  PNFFVSLSSAFTQTPLVRSNKPNLLLLPPVADSVKLIQDFHQSLISATEKFKGFLHSLAS 81

Query: 82  ENPFLNKLLSLPSEFQSFRHQIHGMNSRNFR-ALSSHNFAAVLPGDSMAGLVVANGIQNF 141
           +NP   + + L SEF     +I   N+   R A+S+H FAAVLPGDS+AGLVVANG+ NF
Sbjct: 82  KNPLFQEAVRLSSEFHILCDEIRLRNTTRVRFAMSNHGFAAVLPGDSVAGLVVANGLINF 141

Query: 142 LSLYNTLLVVRLVLTWFPNTPPAIVSPLSTLCDPYLNIFRGIIPPLGGTLDLSPILAFLV 201
           L++YNT+LVVRLVLTWFP+ PPAIV+PLSTLCDPYLNIFRG IPPLGG LDLSPILAFLV
Sbjct: 142 LNIYNTILVVRLVLTWFPSAPPAIVNPLSTLCDPYLNIFRGFIPPLGG-LDLSPILAFLV 201

Query: 202 LNAFTSTAAALPAELPAPNSSLANPTPLKGSVDLTTSQKKWMRR 241
           LNAFTS+A ALP ELP+ +          G+V   +S+ KW+RR
Sbjct: 202 LNAFTSSAMALPCELPSAD----------GAVSPASSETKWVRR 234

[Close]

BLAST of HG10004306.1 vs. ExPASy Swiss-Prot
Match: Q9SRS3 (YlmG homolog protein 1-1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=YLMG1-1 PE=2 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 3.0e-14
Identity = 41/77 (53.25%), Postives = 56/77 (72.73%), Query Frame = 0


Query: 128 VVANGIQNFLSLYNTLLVVRLVLTWFPNTP--PAIVSPLSTLCDPYLNIFRGIIPPLGGT 187
           VVA GI+ +L +Y+ +L+VR++L+WFPN P     +S +  LCDPYLN+FR IIPP+  T
Sbjct: 149 VVAVGIKKWLDIYSGVLMVRVLLSWFPNIPWERQPLSAIRDLCDPYLNLFRNIIPPIFDT 208

Query: 188 LDLSPILAFLVLNAFTS 203
           LD+SP+LAF VL    S
Sbjct: 209 LDVSPLLAFAVLGTLGS 225

[Close]

BLAST of HG10004306.1 vs. ExPASy Swiss-Prot
Match: Q9SUE0 (YlmG homolog protein 1-2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=YLMG1-2 PE=2 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 6.8e-14
Identity = 40/77 (51.95%), Postives = 55/77 (71.43%), Query Frame = 0


Query: 128 VVANGIQNFLSLYNTLLVVRLVLTWFPNTP--PAIVSPLSTLCDPYLNIFRGIIPPLGGT 187
           VVA G+  +L +Y+ +L+VR++L+WFPN P     +S +  LCDPYLN+FR IIPP+  T
Sbjct: 135 VVAAGLSKWLDIYSGVLMVRVLLSWFPNIPWDRQPLSAIRDLCDPYLNLFRNIIPPVFDT 194

Query: 188 LDLSPILAFLVLNAFTS 203
           LD+SP+LAF VL    S
Sbjct: 195 LDVSPLLAFAVLGTLGS 211

[Close]

BLAST of HG10004306.1 vs. ExPASy Swiss-Prot
Match: O78424 (Uncharacterized protein ycf19 OS=Guillardia theta OX=55529 GN=ycf19 PE=3 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 3.2e-08
Identity = 33/64 (51.56%), Postives = 44/64 (68.75%), Query Frame = 0


Query: 136 FLSLYNTLLVVRLVLTWFPNTP--PAIVSPLSTLCDPYLNIFRGIIPPLGGTLDLSPILA 195
           FL +Y  LL++R+ LTWFPN          LS + DPYL +FRGI+PPL G +D+SPIL 
Sbjct: 15  FLQIYLILLLIRVSLTWFPNVNWYGQPFYSLSRITDPYLKMFRGIVPPLIG-IDISPILG 74

Query: 196 FLVL 198
           F++L
Sbjct: 75  FILL 77

[Close]

BLAST of HG10004306.1 vs. ExPASy Swiss-Prot
Match: P51353 (Uncharacterized protein ycf19 OS=Porphyra purpurea OX=2787 GN=ycf19 PE=3 SV=1)

HSP 1 Score: 50.4 bits (119), Expect = 3.4e-05
Identity = 28/72 (38.89%), Postives = 43/72 (59.72%), Query Frame = 0


Query: 128 VVANGIQNFLSLYNTLLVVRLVLTWFP--NTPPAIVSPLSTLCDPYLNIFRGIIPPLGGT 187
           ++   I NF  +Y  L++++L L WFP  N        L+ + DPYL +FRG IPP+ G 
Sbjct: 10  LLLGSIANFSEIYLILILLKLSLAWFPTVNWYNEPFCSLNRITDPYLKLFRGSIPPMFG- 69

Query: 188 LDLSPILAFLVL 198
           +D+SP+L  + L
Sbjct: 70  MDMSPMLGIIFL 80

[Close]

BLAST of HG10004306.1 vs. ExPASy TrEMBL
Match: A0A5D3BN87 (YlmG-like protein 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold187G00120 PE=4 SV=1)

HSP 1 Score: 451.8 bits (1161), Expect = 1.8e-123
Identity = 231/251 (92.03%), Postives = 236/251 (94.02%), Query Frame = 0


Query: 1   MTPDEPSLLNTRRSSTAFNFFPNCISSFSPAFSQTPSGASRRRHAEFIPPCNFLRDLHES 60
           MTP E SL N +R+STAFNFFPNCISSFSPAFSQTPSG SRRR  EF  PCNFLRDLHES
Sbjct: 1   MTPHESSLQNPKRTSTAFNFFPNCISSFSPAFSQTPSGPSRRRQPEFASPCNFLRDLHES 60

Query: 61  FASTTESCIRFFDSLASENPFLNKLLSLPSEFQSFRHQIHGMNSRNFRALSSHNFAAVLP 120
           FASTTESCIR F S ASENPFL+KLLSLPSEFQSFR QIH MNSRNFRALSSHNFAAVLP
Sbjct: 61  FASTTESCIRLFHSFASENPFLHKLLSLPSEFQSFRFQIHSMNSRNFRALSSHNFAAVLP 120

Query: 121 GDSMAGLVVANGIQNFLSLYNTLLVVRLVLTWFPNTPPAIVSPLSTLCDPYLNIFRGIIP 180
           GDSMAGLVVANGIQNFLSLYNTLLVVRLVLTWFPNTPPAIVSPLSTLCDPYLNIFRGIIP
Sbjct: 121 GDSMAGLVVANGIQNFLSLYNTLLVVRLVLTWFPNTPPAIVSPLSTLCDPYLNIFRGIIP 180

Query: 181 PLGGTLDLSPILAFLVLNAFTSTAAALPAELPAPNSSLANPTPLKGSVDLTTSQKKWMRR 240
           PLGGTLDLSPILAFLVLNAFTSTAAALPAELPAPNSSLANP PL+GSVDLT+SQKKWMRR
Sbjct: 181 PLGGTLDLSPILAFLVLNAFTSTAAALPAELPAPNSSLANPNPLEGSVDLTSSQKKWMRR 240

Query: 241 LQGSGKNNADA 252
           LQGSGKNNADA
Sbjct: 241 LQGSGKNNADA 251

[Close]

BLAST of HG10004306.1 vs. ExPASy TrEMBL
Match: A0A1S3BDU1 (ylmG homolog protein 2, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103488523 PE=4 SV=1)

HSP 1 Score: 451.8 bits (1161), Expect = 1.8e-123
Identity = 231/251 (92.03%), Postives = 236/251 (94.02%), Query Frame = 0


Query: 1   MTPDEPSLLNTRRSSTAFNFFPNCISSFSPAFSQTPSGASRRRHAEFIPPCNFLRDLHES 60
           MTP E SL N +R+STAFNFFPNCISSFSPAFSQTPSG SRRR  EF  PCNFLRDLHES
Sbjct: 1   MTPHESSLQNPKRTSTAFNFFPNCISSFSPAFSQTPSGPSRRRQPEFASPCNFLRDLHES 60

Query: 61  FASTTESCIRFFDSLASENPFLNKLLSLPSEFQSFRHQIHGMNSRNFRALSSHNFAAVLP 120
           FASTTESCIR F S ASENPFL+KLLSLPSEFQSFR QIH MNSRNFRALSSHNFAAVLP
Sbjct: 61  FASTTESCIRLFHSFASENPFLHKLLSLPSEFQSFRFQIHSMNSRNFRALSSHNFAAVLP 120

Query: 121 GDSMAGLVVANGIQNFLSLYNTLLVVRLVLTWFPNTPPAIVSPLSTLCDPYLNIFRGIIP 180
           GDSMAGLVVANGIQNFLSLYNTLLVVRLVLTWFPNTPPAIVSPLSTLCDPYLNIFRGIIP
Sbjct: 121 GDSMAGLVVANGIQNFLSLYNTLLVVRLVLTWFPNTPPAIVSPLSTLCDPYLNIFRGIIP 180

Query: 181 PLGGTLDLSPILAFLVLNAFTSTAAALPAELPAPNSSLANPTPLKGSVDLTTSQKKWMRR 240
           PLGGTLDLSPILAFLVLNAFTSTAAALPAELPAPNSSLANP PL+GSVDLT+SQKKWMRR
Sbjct: 181 PLGGTLDLSPILAFLVLNAFTSTAAALPAELPAPNSSLANPNPLEGSVDLTSSQKKWMRR 240

Query: 241 LQGSGKNNADA 252
           LQGSGKNNADA
Sbjct: 241 LQGSGKNNADA 251

[Close]

BLAST of HG10004306.1 vs. ExPASy TrEMBL
Match: A0A0A0KDJ4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G362410 PE=4 SV=1)

HSP 1 Score: 446.0 bits (1146), Expect = 1.0e-121
Identity = 227/253 (89.72%), Postives = 237/253 (93.68%), Query Frame = 0


Query: 1   MTPDEPSLLNTRRSSTAFNFFPNCISSFSPAFSQTPSGASRRRHAEFIPPCNFLRDLHES 60
           MTP + SL N +++STAFNFFPNCISSFSPAFSQTPSG SRRR  EF PPCNFLR LHES
Sbjct: 1   MTPHDSSLQNPKQTSTAFNFFPNCISSFSPAFSQTPSGPSRRRQLEFAPPCNFLRHLHES 60

Query: 61  FASTTESCIRFFDSLASENPFLNKLLSLPSEFQSFRHQIHGMNSRNFRALSSHNFAAVLP 120
           FASTTESCIR F SLASENPFL+KLLSLPSEF  FR+QIHGMNS NFRALSSHNFAAVLP
Sbjct: 61  FASTTESCIRLFHSLASENPFLHKLLSLPSEFHRFRYQIHGMNSMNFRALSSHNFAAVLP 120

Query: 121 GDSMAGLVVANGIQNFLSLYNTLLVVRLVLTWFPNTPPAIVSPLSTLCDPYLNIFRGIIP 180
           GDSMAGLVVANGIQNFLSLYNTLLVVRLVLTWFPNTPPAIVSPLSTLCDPYLNIFRGIIP
Sbjct: 121 GDSMAGLVVANGIQNFLSLYNTLLVVRLVLTWFPNTPPAIVSPLSTLCDPYLNIFRGIIP 180

Query: 181 PLGGTLDLSPILAFLVLNAFTSTAAALPAELPAPNSSLANPTPLKGSVDLTTSQKKWMRR 240
           PLGGTLDLSPILAFLVLNAFTSTAAALPAELPAPNSSLANP PLKGSVDLT+SQKKWM+R
Sbjct: 181 PLGGTLDLSPILAFLVLNAFTSTAAALPAELPAPNSSLANPNPLKGSVDLTSSQKKWMKR 240

Query: 241 LQGSGKNNADAAR 254
           LQGS KNNADA++
Sbjct: 241 LQGSEKNNADASQ 253

[Close]

BLAST of HG10004306.1 vs. ExPASy TrEMBL
Match: A0A6J1HB64 (ylmG homolog protein 2, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111462476 PE=4 SV=1)

HSP 1 Score: 439.9 bits (1130), Expect = 7.3e-120
Identity = 221/253 (87.35%), Postives = 234/253 (92.49%), Query Frame = 0


Query: 1   MTPDEPSLLNTRRSSTAFNFFPNCISSFSPAFSQTPSGASRRRHAEFIPPCNFLRDLHES 60
           MTPDE S+LN RRSSTAF+FFPNCISSFSPAFSQTP GASRRRH +F+PPC FLRDLHES
Sbjct: 1   MTPDESSVLNPRRSSTAFSFFPNCISSFSPAFSQTPFGASRRRHVDFVPPCKFLRDLHES 60

Query: 61  FASTTESCIRFFDSLASENPFLNKLLSLPSEFQSFRHQIHGMNSRNFRALSSHNFAAVLP 120
           FA T E CI FF SLASENPFLNKL+SL SE QSF HQIHG+NSRNFRALSSHNFAAVLP
Sbjct: 61  FALTAEKCIVFFHSLASENPFLNKLMSLSSELQSFHHQIHGLNSRNFRALSSHNFAAVLP 120

Query: 121 GDSMAGLVVANGIQNFLSLYNTLLVVRLVLTWFPNTPPAIVSPLSTLCDPYLNIFRGIIP 180
           GDS+AGL+V NGIQNFLS+YNTLLVVRLVLTWFPNTPPAIVSPLSTLCDPYLNIFRGIIP
Sbjct: 121 GDSVAGLLVTNGIQNFLSIYNTLLVVRLVLTWFPNTPPAIVSPLSTLCDPYLNIFRGIIP 180

Query: 181 PLGGTLDLSPILAFLVLNAFTSTAAALPAELPAPNSSLANPTPLKGSVDLTTSQKKWMRR 240
           PLGGTLDLSPILAFLVLNAFTSTAAALPAELP PNSSLAN TP KGS DLT+SQKKW+RR
Sbjct: 181 PLGGTLDLSPILAFLVLNAFTSTAAALPAELPVPNSSLANATPSKGSFDLTSSQKKWIRR 240

Query: 241 LQGSGKNNADAAR 254
           LQGSG+N AD+AR
Sbjct: 241 LQGSGENKADSAR 253

[Close]

BLAST of HG10004306.1 vs. ExPASy TrEMBL
Match: A0A6J1K921 (ylmG homolog protein 2, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111492206 PE=4 SV=1)

HSP 1 Score: 433.7 bits (1114), Expect = 5.2e-118
Identity = 219/250 (87.60%), Postives = 230/250 (92.00%), Query Frame = 0


Query: 1   MTPDEPSLLNTRRSSTAFNFFPNCISSFSPAFSQTPSGASRRRHAEFIPPCNFLRDLHES 60
           MTPDE S+LN RRSSTAF+FFPNCISSFSPAFSQTP G SRRRH +F PP  FLRDLHES
Sbjct: 1   MTPDESSVLNPRRSSTAFSFFPNCISSFSPAFSQTPFGGSRRRHVDFFPPRKFLRDLHES 60

Query: 61  FASTTESCIRFFDSLASENPFLNKLLSLPSEFQSFRHQIHGMNSRNFRALSSHNFAAVLP 120
           FAST E CI FF SLASENPFL+KL+SL SEFQSF HQIHGMNSRNFRALSSHNFAAVLP
Sbjct: 61  FASTAEKCIVFFHSLASENPFLDKLMSLSSEFQSFHHQIHGMNSRNFRALSSHNFAAVLP 120

Query: 121 GDSMAGLVVANGIQNFLSLYNTLLVVRLVLTWFPNTPPAIVSPLSTLCDPYLNIFRGIIP 180
           GDS+AG++V NGIQNFLS+YNTLLVVRLVLTWFPNTPPAIVSPLSTLCDPYLNIFRGIIP
Sbjct: 121 GDSVAGILVTNGIQNFLSIYNTLLVVRLVLTWFPNTPPAIVSPLSTLCDPYLNIFRGIIP 180

Query: 181 PLGGTLDLSPILAFLVLNAFTSTAAALPAELPAPNSSLANPTPLKGSVDLTTSQKKWMRR 240
           PLGGTLDLSPILAFLVLNAFTSTAAALPAELP PNSSLAN TP KGS DLTTSQKKW+RR
Sbjct: 181 PLGGTLDLSPILAFLVLNAFTSTAAALPAELPVPNSSLANATPSKGSFDLTTSQKKWIRR 240

Query: 241 LQGSGKNNAD 251
           LQGSG+N AD
Sbjct: 241 LQGSGENKAD 250

[Close]

BLAST of HG10004306.1 vs. TAIR 10
Match: AT5G21920.1 (YGGT family protein )

HSP 1 Score: 221.9 bits (564), Expect = 6.0e-58
Identity = 126/224 (56.25%), Postives = 154/224 (68.75%), Query Frame = 0


Query: 22  PNCISSFSPAFSQTPSGASRRRHAEFIPP----CNFLRDLHESFASTTESCIRFFDSLAS 81
           PN   S S AF+QTP   S + +   +PP       ++D H+S  S TE    F  SLAS
Sbjct: 22  PNFFVSLSSAFTQTPLVRSNKPNLLLLPPVADSVKLIQDFHQSLISATEKFKGFLHSLAS 81

Query: 82  ENPFLNKLLSLPSEFQSFRHQIHGMNSRNFR-ALSSHNFAAVLPGDSMAGLVVANGIQNF 141
           +NP   + + L SEF     +I   N+   R A+S+H FAAVLPGDS+AGLVVANG+ NF
Sbjct: 82  KNPLFQEAVRLSSEFHILCDEIRLRNTTRVRFAMSNHGFAAVLPGDSVAGLVVANGLINF 141

Query: 142 LSLYNTLLVVRLVLTWFPNTPPAIVSPLSTLCDPYLNIFRGIIPPLGGTLDLSPILAFLV 201
           L++YNT+LVVRLVLTWFP+ PPAIV+PLSTLCDPYLNIFRG IPPLGG LDLSPILAFLV
Sbjct: 142 LNIYNTILVVRLVLTWFPSAPPAIVNPLSTLCDPYLNIFRGFIPPLGG-LDLSPILAFLV 201

Query: 202 LNAFTSTAAALPAELPAPNSSLANPTPLKGSVDLTTSQKKWMRR 241
           LNAFTS+A ALP ELP+ +          G+V   +S+ KW+RR
Sbjct: 202 LNAFTSSAMALPCELPSAD----------GAVSPASSETKWVRR 234

[Close]

BLAST of HG10004306.1 vs. TAIR 10
Match: AT5G21920.2 (YGGT family protein )

HSP 1 Score: 209.5 bits (532), Expect = 3.1e-54
Identity = 123/224 (54.91%), Postives = 149/224 (66.52%), Query Frame = 0


Query: 22  PNCISSFSPAFSQTPSGASRRRHAEFIPP----CNFLRDLHESFASTTESCIRFFDSLAS 81
           PN   S S AF+QTP   S + +   +PP       ++D H+S  S TE    F  SLAS
Sbjct: 22  PNFFVSLSSAFTQTPLVRSNKPNLLLLPPVADSVKLIQDFHQSLISATEKFKGFLHSLAS 81

Query: 82  ENPFLNKLLSLPSEFQSFRHQIHGMNSRNFR-ALSSHNFAAVLPGDSMAGLVVANGIQNF 141
           +NP              F+  I   N+   R A+S+H FAAVLPGDS+AGLVVANG+ NF
Sbjct: 82  KNPL-------------FQEAIRLRNTTRVRFAMSNHGFAAVLPGDSVAGLVVANGLINF 141

Query: 142 LSLYNTLLVVRLVLTWFPNTPPAIVSPLSTLCDPYLNIFRGIIPPLGGTLDLSPILAFLV 201
           L++YNT+LVVRLVLTWFP+ PPAIV+PLSTLCDPYLNIFRG IPPLGG LDLSPILAFLV
Sbjct: 142 LNIYNTILVVRLVLTWFPSAPPAIVNPLSTLCDPYLNIFRGFIPPLGG-LDLSPILAFLV 201

Query: 202 LNAFTSTAAALPAELPAPNSSLANPTPLKGSVDLTTSQKKWMRR 241
           LNAFTS+A ALP ELP+ +          G+V   +S+ KW+RR
Sbjct: 202 LNAFTSSAMALPCELPSAD----------GAVSPASSETKWVRR 221

[Close]

BLAST of HG10004306.1 vs. TAIR 10
Match: AT3G07430.1 (YGGT family protein )

HSP 1 Score: 80.5 bits (197), Expect = 2.2e-15
Identity = 41/77 (53.25%), Postives = 56/77 (72.73%), Query Frame = 0


Query: 128 VVANGIQNFLSLYNTLLVVRLVLTWFPNTP--PAIVSPLSTLCDPYLNIFRGIIPPLGGT 187
           VVA GI+ +L +Y+ +L+VR++L+WFPN P     +S +  LCDPYLN+FR IIPP+  T
Sbjct: 149 VVAVGIKKWLDIYSGVLMVRVLLSWFPNIPWERQPLSAIRDLCDPYLNLFRNIIPPIFDT 208

Query: 188 LDLSPILAFLVLNAFTS 203
           LD+SP+LAF VL    S
Sbjct: 209 LDVSPLLAFAVLGTLGS 225

[Close]

BLAST of HG10004306.1 vs. TAIR 10
Match: AT4G27990.1 (YGGT family protein )

HSP 1 Score: 79.3 bits (194), Expect = 4.8e-15
Identity = 40/77 (51.95%), Postives = 55/77 (71.43%), Query Frame = 0


Query: 128 VVANGIQNFLSLYNTLLVVRLVLTWFPNTP--PAIVSPLSTLCDPYLNIFRGIIPPLGGT 187
           VVA G+  +L +Y+ +L+VR++L+WFPN P     +S +  LCDPYLN+FR IIPP+  T
Sbjct: 135 VVAAGLSKWLDIYSGVLMVRVLLSWFPNIPWDRQPLSAIRDLCDPYLNLFRNIIPPVFDT 194

Query: 188 LDLSPILAFLVLNAFTS 203
           LD+SP+LAF VL    S
Sbjct: 195 LDVSPLLAFAVLGTLGS 211

The following BLAST results are available for this feature:

BLAST of HG10004306.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038884266.1	3.9e-128	93.28	ylmG homolog protein 2, chloroplastic [Benincasa hispida]	[more]
XP_008445540.1	3.8e-123	92.03	PREDICTED: ylmG homolog protein 2, chloroplastic [Cucumis melo] >KAA0064706.1 yl...	[more]
XP_004144214.1	2.1e-121	89.72	ylmG homolog protein 2, chloroplastic [Cucumis sativus] >KGN47583.1 hypothetical...	[more]
KAG7029531.1	2.3e-120	88.14	YlmG-like protein 2, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_022961827.1	1.5e-119	87.35	ylmG homolog protein 2, chloroplastic [Cucurbita moschata]	[more]

BLAST of HG10004306.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9C595	8.4e-57	56.25	YlmG homolog protein 2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=YLMG2 P...	[more]
Q9SRS3	3.0e-14	53.25	YlmG homolog protein 1-1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=YLMG1...	[more]
Q9SUE0	6.8e-14	51.95	YlmG homolog protein 1-2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=YLMG1...	[more]
O78424	3.2e-08	51.56	Uncharacterized protein ycf19 OS=Guillardia theta OX=55529 GN=ycf19 PE=3 SV=1	[more]
P51353	3.4e-05	38.89	Uncharacterized protein ycf19 OS=Porphyra purpurea OX=2787 GN=ycf19 PE=3 SV=1	[more]

BLAST of HG10004306.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BN87	1.8e-123	92.03	YlmG-like protein 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold187G...	[more]
A0A1S3BDU1	1.8e-123	92.03	ylmG homolog protein 2, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103488523 PE...	[more]
A0A0A0KDJ4	1.0e-121	89.72	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G362410 PE=4 SV=1	[more]
A0A6J1HB64	7.3e-120	87.35	ylmG homolog protein 2, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111462...	[more]
A0A6J1K921	5.2e-118	87.60	ylmG homolog protein 2, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC11149220...	[more]

BLAST of HG10004306.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G21920.1	6.0e-58	56.25	YGGT family protein	[more]
AT5G21920.2	3.1e-54	54.91	YGGT family protein	[more]
AT3G07430.1	2.2e-15	53.25	YGGT family protein	[more]
AT4G27990.1	4.8e-15	51.95	YGGT family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003425	CCB3/YggT	PFAM	PF02325	YGGT	coord: 136..199 e-value: 3.2E-15 score: 56.3
IPR003425	CCB3/YggT	PANTHER	PTHR33219	YLMG HOMOLOG PROTEIN 2, CHLOROPLASTIC	coord: 55..245
None	No IPR available	PANTHER	PTHR33219:SF1	YLMG HOMOLOG PROTEIN 2, CHLOROPLASTIC	coord: 55..245

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
HG10004306	HG10004306	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
HG10004306.1-cds	HG10004306.1-cds-Chr08:15845487..15845780	CDS
HG10004306.1-cds	HG10004306.1-cds-Chr08:15845979..15846178	CDS
HG10004306.1-cds	HG10004306.1-cds-Chr08:15847141..15847408	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
HG10004306.1	HG10004306.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0090143	nucleoid organization
biological_process	GO:0010020	chloroplast fission
cellular_component	GO:0016020	membrane