
HG10004306 (gene) Bottle gourd (Hangzhou Gourd) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGACTCCGGACGAGCCTTCACTTCTAAACACTAGGCGAAGTTCTACGGCTTTCAACTTCTTTCCAAACTGCATATCCTCATTCTCACCCGCATTTTCTCAAACACCTTCCGGAGCATCCAGGAGAAGGCACGCCGAATTCATCCCTCCATGTAATTTTCTTCGCGACCTCCATGAATCTTTCGCGTCAACTACTGAAAGCTGCATTAGATTTTTTGACTCATTGGCTTCTGAAAATCCATTTCTTAATAAATTGCTCTCCTTGCCTTCTGAGTTCCAGAGTTTTCGTCACCAGGTAACTAACTGCAACTGTATCTTGACGGTTTCCTGAAATTCTGATTCGTGTTTCTAATGCAATTACTCCGTTTAGTACTTCCGTCTGTTTGTACAGTTTGATTTCCATTTAGAGTATGACCTGCTTCTTACGGTTAATTTTTCCCGGGGGTTTCAATTTTCTAATTTTTGCAGTAATTTGTGTTGAATTCTATTTCAGATCCACGGTATGAACTCCAGGAATTTCCGAGCTCTCTCCAGTCACAATTTTGCTGCAGTTTTGCCGGGGGATTCTATGGCAGGACTTGTCGTCGCTAATGGTATTCAAAATTTCTTGAGCCTCTACAATACACTGTTGGTCGTCAGGCTAGTTTTGACTTGGTTTCCGAACACACCTCCCGCCATTGTTAGTCCTCTAAGGTAACTTTTATTTGTTTTTGACATTACTATTAAAAAAAGAAGAAAGAAGAAAGACGTTTTCATAATGATTGATCGTGAGCCTGGAATGAGATTTCTGAACTGAACATAGCAGCAAGCTTTTATATCCTCACAGCTTGAAAGAGGGAAATATTTATAGTGGCTGTTTGGTCAGAATGATTTAGAAGTTGAAAGATGAAACTGAATGTCTAAATTTCTAGCTCTGATGATCCAACTCATATTCAAATTCACACCACTGATTCAGTAATATGTCATCTTTTGCTTCAGAAACAGATCTTAAAAACTGCTGTCAAACAAGTATTATGGACAAAAAAAGGCCCAAGAAAACTTTTTCTTATATATTAGAAGACAATAATTAGTTTATAAGAGTCTGCTTGGAATGTTTTTGTGCTTAACATGTATACATATATTTTTAACTTCAAAATTATTTCTTAAAAAGCAATTTTAAGTACAGGTCATTTAAAAAAAATACTTTAAAAATAATTTCAAATGGACTCTAGTGGGTCAAACAACCTCGTCGTCATGGATACCTTCATATATCTTTGTATCTGTTAGATCTAGATGATATAAGATCAAATTTATCTTCACCCATCAACTTACCTTTTTGGGTCAATTGGCGAGTTAACAGTATCTACCATCTATTGGGTGTTGTTATCTAATGGGGTGCCCTTGTTTTAGTTTGTCTTAGATTAAAAAACATACAAAAAAGAAAATAAAAAATAGAATTTTTAAAATAGAAAAATAAGAAAAACTATTTACATAAAATAGTCAAATTTTTAGATAGTTGTGATAGACGCTGATAGAAGTCTATCACTGATAGATACTTATAGAAGTCTATCAATGTCTATCAGTGTTTTAAAAAAAACGATTTTGAAACAATATATATGTAGAGAAAGTTGCAATGTAAAATTTTGTGTAATTGGCTTGGTTGGTTTCTCTTTCAGCACACTATGCGATCCATATTTGAACATATTTCGTGGGATTATCCCACCTCTTGGAGGGACACTTGATTTGTCTCCAATATTGGCATTCCTGGTCTTAAACGCCTTTACCAGCACTGCCGCTGCACTTCCTGCTGAACTTCCAGCCCCAAATTCGTCTCTTGCAAATCCTACTCCTTTAAAAGGCTCTGTTGATCTTACCACGTCACAAAAGAAATGGATGAGAAGGCTTCAGGGAAGTGGAAAAAATAATGCTGATGCTGCTCGATAG ATGACTCCGGACGAGCCTTCACTTCTAAACACTAGGCGAAGTTCTACGGCTTTCAACTTCTTTCCAAACTGCATATCCTCATTCTCACCCGCATTTTCTCAAACACCTTCCGGAGCATCCAGGAGAAGGCACGCCGAATTCATCCCTCCATGTAATTTTCTTCGCGACCTCCATGAATCTTTCGCGTCAACTACTGAAAGCTGCATTAGATTTTTTGACTCATTGGCTTCTGAAAATCCATTTCTTAATAAATTGCTCTCCTTGCCTTCTGAGTTCCAGAGTTTTCGTCACCAGATCCACGGTATGAACTCCAGGAATTTCCGAGCTCTCTCCAGTCACAATTTTGCTGCAGTTTTGCCGGGGGATTCTATGGCAGGACTTGTCGTCGCTAATGGTATTCAAAATTTCTTGAGCCTCTACAATACACTGTTGGTCGTCAGGCTAGTTTTGACTTGGTTTCCGAACACACCTCCCGCCATTGTTAGTCCTCTAAGCACACTATGCGATCCATATTTGAACATATTTCGTGGGATTATCCCACCTCTTGGAGGGACACTTGATTTGTCTCCAATATTGGCATTCCTGGTCTTAAACGCCTTTACCAGCACTGCCGCTGCACTTCCTGCTGAACTTCCAGCCCCAAATTCGTCTCTTGCAAATCCTACTCCTTTAAAAGGCTCTGTTGATCTTACCACGTCACAAAAGAAATGGATGAGAAGGCTTCAGGGAAGTGGAAAAAATAATGCTGATGCTGCTCGATAG ATGACTCCGGACGAGCCTTCACTTCTAAACACTAGGCGAAGTTCTACGGCTTTCAACTTCTTTCCAAACTGCATATCCTCATTCTCACCCGCATTTTCTCAAACACCTTCCGGAGCATCCAGGAGAAGGCACGCCGAATTCATCCCTCCATGTAATTTTCTTCGCGACCTCCATGAATCTTTCGCGTCAACTACTGAAAGCTGCATTAGATTTTTTGACTCATTGGCTTCTGAAAATCCATTTCTTAATAAATTGCTCTCCTTGCCTTCTGAGTTCCAGAGTTTTCGTCACCAGATCCACGGTATGAACTCCAGGAATTTCCGAGCTCTCTCCAGTCACAATTTTGCTGCAGTTTTGCCGGGGGATTCTATGGCAGGACTTGTCGTCGCTAATGGTATTCAAAATTTCTTGAGCCTCTACAATACACTGTTGGTCGTCAGGCTAGTTTTGACTTGGTTTCCGAACACACCTCCCGCCATTGTTAGTCCTCTAAGCACACTATGCGATCCATATTTGAACATATTTCGTGGGATTATCCCACCTCTTGGAGGGACACTTGATTTGTCTCCAATATTGGCATTCCTGGTCTTAAACGCCTTTACCAGCACTGCCGCTGCACTTCCTGCTGAACTTCCAGCCCCAAATTCGTCTCTTGCAAATCCTACTCCTTTAAAAGGCTCTGTTGATCTTACCACGTCACAAAAGAAATGGATGAGAAGGCTTCAGGGAAGTGGAAAAAATAATGCTGATGCTGCTCGATAG MTPDEPSLLNTRRSSTAFNFFPNCISSFSPAFSQTPSGASRRRHAEFIPPCNFLRDLHESFASTTESCIRFFDSLASENPFLNKLLSLPSEFQSFRHQIHGMNSRNFRALSSHNFAAVLPGDSMAGLVVANGIQNFLSLYNTLLVVRLVLTWFPNTPPAIVSPLSTLCDPYLNIFRGIIPPLGGTLDLSPILAFLVLNAFTSTAAALPAELPAPNSSLANPTPLKGSVDLTTSQKKWMRRLQGSGKNNADAAR Homology
BLAST of HG10004306 vs. NCBI nr
Match: XP_038884266.1 (ylmG homolog protein 2, chloroplastic [Benincasa hispida]) HSP 1 Score: 468.4 bits (1204), Expect = 3.9e-128 Identity = 236/253 (93.28%), Postives = 246/253 (97.23%), Query Frame = 0
BLAST of HG10004306 vs. NCBI nr
Match: XP_008445540.1 (PREDICTED: ylmG homolog protein 2, chloroplastic [Cucumis melo] >KAA0064706.1 ylmG-like protein 2 [Cucumis melo var. makuwa] >TYK00724.1 ylmG-like protein 2 [Cucumis melo var. makuwa]) HSP 1 Score: 451.8 bits (1161), Expect = 3.8e-123 Identity = 231/251 (92.03%), Postives = 236/251 (94.02%), Query Frame = 0
BLAST of HG10004306 vs. NCBI nr
Match: XP_004144214.1 (ylmG homolog protein 2, chloroplastic [Cucumis sativus] >KGN47583.1 hypothetical protein Csa_019073 [Cucumis sativus]) HSP 1 Score: 446.0 bits (1146), Expect = 2.1e-121 Identity = 227/253 (89.72%), Postives = 237/253 (93.68%), Query Frame = 0
BLAST of HG10004306 vs. NCBI nr
Match: KAG7029531.1 (YlmG-like protein 2, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 442.6 bits (1137), Expect = 2.3e-120 Identity = 223/253 (88.14%), Postives = 234/253 (92.49%), Query Frame = 0
BLAST of HG10004306 vs. NCBI nr
Match: XP_022961827.1 (ylmG homolog protein 2, chloroplastic [Cucurbita moschata]) HSP 1 Score: 439.9 bits (1130), Expect = 1.5e-119 Identity = 221/253 (87.35%), Postives = 234/253 (92.49%), Query Frame = 0
BLAST of HG10004306 vs. ExPASy Swiss-Prot
Match: Q9C595 (YlmG homolog protein 2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=YLMG2 PE=2 SV=1) HSP 1 Score: 221.9 bits (564), Expect = 8.4e-57 Identity = 126/224 (56.25%), Postives = 154/224 (68.75%), Query Frame = 0
BLAST of HG10004306 vs. ExPASy Swiss-Prot
Match: Q9SRS3 (YlmG homolog protein 1-1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=YLMG1-1 PE=2 SV=1) HSP 1 Score: 80.5 bits (197), Expect = 3.0e-14 Identity = 41/77 (53.25%), Postives = 56/77 (72.73%), Query Frame = 0
BLAST of HG10004306 vs. ExPASy Swiss-Prot
Match: Q9SUE0 (YlmG homolog protein 1-2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=YLMG1-2 PE=2 SV=1) HSP 1 Score: 79.3 bits (194), Expect = 6.8e-14 Identity = 40/77 (51.95%), Postives = 55/77 (71.43%), Query Frame = 0
BLAST of HG10004306 vs. ExPASy Swiss-Prot
Match: O78424 (Uncharacterized protein ycf19 OS=Guillardia theta OX=55529 GN=ycf19 PE=3 SV=1) HSP 1 Score: 60.5 bits (145), Expect = 3.2e-08 Identity = 33/64 (51.56%), Postives = 44/64 (68.75%), Query Frame = 0
BLAST of HG10004306 vs. ExPASy Swiss-Prot
Match: P51353 (Uncharacterized protein ycf19 OS=Porphyra purpurea OX=2787 GN=ycf19 PE=3 SV=1) HSP 1 Score: 50.4 bits (119), Expect = 3.4e-05 Identity = 28/72 (38.89%), Postives = 43/72 (59.72%), Query Frame = 0
BLAST of HG10004306 vs. ExPASy TrEMBL
Match: A0A5D3BN87 (YlmG-like protein 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold187G00120 PE=4 SV=1) HSP 1 Score: 451.8 bits (1161), Expect = 1.8e-123 Identity = 231/251 (92.03%), Postives = 236/251 (94.02%), Query Frame = 0
BLAST of HG10004306 vs. ExPASy TrEMBL
Match: A0A1S3BDU1 (ylmG homolog protein 2, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103488523 PE=4 SV=1) HSP 1 Score: 451.8 bits (1161), Expect = 1.8e-123 Identity = 231/251 (92.03%), Postives = 236/251 (94.02%), Query Frame = 0
BLAST of HG10004306 vs. ExPASy TrEMBL
Match: A0A0A0KDJ4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G362410 PE=4 SV=1) HSP 1 Score: 446.0 bits (1146), Expect = 1.0e-121 Identity = 227/253 (89.72%), Postives = 237/253 (93.68%), Query Frame = 0
BLAST of HG10004306 vs. ExPASy TrEMBL
Match: A0A6J1HB64 (ylmG homolog protein 2, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111462476 PE=4 SV=1) HSP 1 Score: 439.9 bits (1130), Expect = 7.3e-120 Identity = 221/253 (87.35%), Postives = 234/253 (92.49%), Query Frame = 0
BLAST of HG10004306 vs. ExPASy TrEMBL
Match: A0A6J1K921 (ylmG homolog protein 2, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111492206 PE=4 SV=1) HSP 1 Score: 433.7 bits (1114), Expect = 5.2e-118 Identity = 219/250 (87.60%), Postives = 230/250 (92.00%), Query Frame = 0
BLAST of HG10004306 vs. TAIR 10
Match: AT5G21920.1 (YGGT family protein ) HSP 1 Score: 221.9 bits (564), Expect = 6.0e-58 Identity = 126/224 (56.25%), Postives = 154/224 (68.75%), Query Frame = 0
BLAST of HG10004306 vs. TAIR 10
Match: AT5G21920.2 (YGGT family protein ) HSP 1 Score: 209.5 bits (532), Expect = 3.1e-54 Identity = 123/224 (54.91%), Postives = 149/224 (66.52%), Query Frame = 0
BLAST of HG10004306 vs. TAIR 10
Match: AT3G07430.1 (YGGT family protein ) HSP 1 Score: 80.5 bits (197), Expect = 2.2e-15 Identity = 41/77 (53.25%), Postives = 56/77 (72.73%), Query Frame = 0
BLAST of HG10004306 vs. TAIR 10
Match: AT4G27990.1 (YGGT family protein ) HSP 1 Score: 79.3 bits (194), Expect = 4.8e-15 Identity = 40/77 (51.95%), Postives = 55/77 (71.43%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
|