HG10004306 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10004306
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	ylmG homolog protein 2, chloroplastic
Location	Chr08: 15845487 .. 15847408 (+)
RNA-Seq Expression	HG10004306
Synteny	HG10004306

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACTCCGGACGAGCCTTCACTTCTAAACACTAGGCGAAGTTCTACGGCTTTCAACTTCTTTCCAAACTGCATATCCTCATTCTCACCCGCATTTTCTCAAACACCTTCCGGAGCATCCAGGAGAAGGCACGCCGAATTCATCCCTCCATGTAATTTTCTTCGCGACCTCCATGAATCTTTCGCGTCAACTACTGAAAGCTGCATTAGATTTTTTGACTCATTGGCTTCTGAAAATCCATTTCTTAATAAATTGCTCTCCTTGCCTTCTGAGTTCCAGAGTTTTCGTCACCAGGTAACTAACTGCAACTGTATCTTGACGGTTTCCTGAAATTCTGATTCGTGTTTCTAATGCAATTACTCCGTTTAGTACTTCCGTCTGTTTGTACAGTTTGATTTCCATTTAGAGTATGACCTGCTTCTTACGGTTAATTTTTCCCGGGGGTTTCAATTTTCTAATTTTTGCAGTAATTTGTGTTGAATTCTATTTCAGATCCACGGTATGAACTCCAGGAATTTCCGAGCTCTCTCCAGTCACAATTTTGCTGCAGTTTTGCCGGGGGATTCTATGGCAGGACTTGTCGTCGCTAATGGTATTCAAAATTTCTTGAGCCTCTACAATACACTGTTGGTCGTCAGGCTAGTTTTGACTTGGTTTCCGAACACACCTCCCGCCATTGTTAGTCCTCTAAGGTAACTTTTATTTGTTTTTGACATTACTATTAAAAAAAGAAGAAAGAAGAAAGACGTTTTCATAATGATTGATCGTGAGCCTGGAATGAGATTTCTGAACTGAACATAGCAGCAAGCTTTTATATCCTCACAGCTTGAAAGAGGGAAATATTTATAGTGGCTGTTTGGTCAGAATGATTTAGAAGTTGAAAGATGAAACTGAATGTCTAAATTTCTAGCTCTGATGATCCAACTCATATTCAAATTCACACCACTGATTCAGTAATATGTCATCTTTTGCTTCAGAAACAGATCTTAAAAACTGCTGTCAAACAAGTATTATGGACAAAAAAAGGCCCAAGAAAACTTTTTCTTATATATTAGAAGACAATAATTAGTTTATAAGAGTCTGCTTGGAATGTTTTTGTGCTTAACATGTATACATATATTTTTAACTTCAAAATTATTTCTTAAAAAGCAATTTTAAGTACAGGTCATTTAAAAAAAATACTTTAAAAATAATTTCAAATGGACTCTAGTGGGTCAAACAACCTCGTCGTCATGGATACCTTCATATATCTTTGTATCTGTTAGATCTAGATGATATAAGATCAAATTTATCTTCACCCATCAACTTACCTTTTTGGGTCAATTGGCGAGTTAACAGTATCTACCATCTATTGGGTGTTGTTATCTAATGGGGTGCCCTTGTTTTAGTTTGTCTTAGATTAAAAAACATACAAAAAAGAAAATAAAAAATAGAATTTTTAAAATAGAAAAATAAGAAAAACTATTTACATAAAATAGTCAAATTTTTAGATAGTTGTGATAGACGCTGATAGAAGTCTATCACTGATAGATACTTATAGAAGTCTATCAATGTCTATCAGTGTTTTAAAAAAAACGATTTTGAAACAATATATATGTAGAGAAAGTTGCAATGTAAAATTTTGTGTAATTGGCTTGGTTGGTTTCTCTTTCAGCACACTATGCGATCCATATTTGAACATATTTCGTGGGATTATCCCACCTCTTGGAGGGACACTTGATTTGTCTCCAATATTGGCATTCCTGGTCTTAAACGCCTTTACCAGCACTGCCGCTGCACTTCCTGCTGAACTTCCAGCCCCAAATTCGTCTCTTGCAAATCCTACTCCTTTAAAAGGCTCTGTTGATCTTACCACGTCACAAAAGAAATGGATGAGAAGGCTTCAGGGAAGTGGAAAAAATAATGCTGATGCTGCTCGATAG

mRNA sequence

ATGACTCCGGACGAGCCTTCACTTCTAAACACTAGGCGAAGTTCTACGGCTTTCAACTTCTTTCCAAACTGCATATCCTCATTCTCACCCGCATTTTCTCAAACACCTTCCGGAGCATCCAGGAGAAGGCACGCCGAATTCATCCCTCCATGTAATTTTCTTCGCGACCTCCATGAATCTTTCGCGTCAACTACTGAAAGCTGCATTAGATTTTTTGACTCATTGGCTTCTGAAAATCCATTTCTTAATAAATTGCTCTCCTTGCCTTCTGAGTTCCAGAGTTTTCGTCACCAGATCCACGGTATGAACTCCAGGAATTTCCGAGCTCTCTCCAGTCACAATTTTGCTGCAGTTTTGCCGGGGGATTCTATGGCAGGACTTGTCGTCGCTAATGGTATTCAAAATTTCTTGAGCCTCTACAATACACTGTTGGTCGTCAGGCTAGTTTTGACTTGGTTTCCGAACACACCTCCCGCCATTGTTAGTCCTCTAAGCACACTATGCGATCCATATTTGAACATATTTCGTGGGATTATCCCACCTCTTGGAGGGACACTTGATTTGTCTCCAATATTGGCATTCCTGGTCTTAAACGCCTTTACCAGCACTGCCGCTGCACTTCCTGCTGAACTTCCAGCCCCAAATTCGTCTCTTGCAAATCCTACTCCTTTAAAAGGCTCTGTTGATCTTACCACGTCACAAAAGAAATGGATGAGAAGGCTTCAGGGAAGTGGAAAAAATAATGCTGATGCTGCTCGATAG

Coding sequence (CDS)

ATGACTCCGGACGAGCCTTCACTTCTAAACACTAGGCGAAGTTCTACGGCTTTCAACTTCTTTCCAAACTGCATATCCTCATTCTCACCCGCATTTTCTCAAACACCTTCCGGAGCATCCAGGAGAAGGCACGCCGAATTCATCCCTCCATGTAATTTTCTTCGCGACCTCCATGAATCTTTCGCGTCAACTACTGAAAGCTGCATTAGATTTTTTGACTCATTGGCTTCTGAAAATCCATTTCTTAATAAATTGCTCTCCTTGCCTTCTGAGTTCCAGAGTTTTCGTCACCAGATCCACGGTATGAACTCCAGGAATTTCCGAGCTCTCTCCAGTCACAATTTTGCTGCAGTTTTGCCGGGGGATTCTATGGCAGGACTTGTCGTCGCTAATGGTATTCAAAATTTCTTGAGCCTCTACAATACACTGTTGGTCGTCAGGCTAGTTTTGACTTGGTTTCCGAACACACCTCCCGCCATTGTTAGTCCTCTAAGCACACTATGCGATCCATATTTGAACATATTTCGTGGGATTATCCCACCTCTTGGAGGGACACTTGATTTGTCTCCAATATTGGCATTCCTGGTCTTAAACGCCTTTACCAGCACTGCCGCTGCACTTCCTGCTGAACTTCCAGCCCCAAATTCGTCTCTTGCAAATCCTACTCCTTTAAAAGGCTCTGTTGATCTTACCACGTCACAAAAGAAATGGATGAGAAGGCTTCAGGGAAGTGGAAAAAATAATGCTGATGCTGCTCGATAG

Protein sequence

MTPDEPSLLNTRRSSTAFNFFPNCISSFSPAFSQTPSGASRRRHAEFIPPCNFLRDLHESFASTTESCIRFFDSLASENPFLNKLLSLPSEFQSFRHQIHGMNSRNFRALSSHNFAAVLPGDSMAGLVVANGIQNFLSLYNTLLVVRLVLTWFPNTPPAIVSPLSTLCDPYLNIFRGIIPPLGGTLDLSPILAFLVLNAFTSTAAALPAELPAPNSSLANPTPLKGSVDLTTSQKKWMRRLQGSGKNNADAAR

Homology

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BLAST of HG10004306 vs. NCBI nr
Match: XP_038884266.1 (ylmG homolog protein 2, chloroplastic [Benincasa hispida])

HSP 1 Score: 468.4 bits (1204), Expect = 3.9e-128
Identity = 236/253 (93.28%), Postives = 246/253 (97.23%), Query Frame = 0


Query: 1   MTPDEPSLLNTRRSSTAFNFFPNCISSFSPAFSQTPSGASRRRHAEFIPPCNFLRDLHES 60
           MTPDE SLLN RR+STAFNFFPNCISSFSPAFSQTPSGASRRR+AEF+PPCNFLRD+H+S
Sbjct: 1   MTPDESSLLNPRRTSTAFNFFPNCISSFSPAFSQTPSGASRRRNAEFVPPCNFLRDVHDS 60

Query: 61  FASTTESCIRFFDSLASENPFLNKLLSLPSEFQSFRHQIHGMNSRNFRALSSHNFAAVLP 120
           FASTTESCIRFF SLASENPFL+KLLSLPSEFQSFRHQIHGMNSRNFRALSSHNFAAVLP
Sbjct: 61  FASTTESCIRFFHSLASENPFLHKLLSLPSEFQSFRHQIHGMNSRNFRALSSHNFAAVLP 120

Query: 121 GDSMAGLVVANGIQNFLSLYNTLLVVRLVLTWFPNTPPAIVSPLSTLCDPYLNIFRGIIP 180
           GDS+AGLVVANG+QNFLSLYNTLLVVRLVLTWFPNTPPAIVSPLSTLCDPYLNIFRGIIP
Sbjct: 121 GDSVAGLVVANGVQNFLSLYNTLLVVRLVLTWFPNTPPAIVSPLSTLCDPYLNIFRGIIP 180

Query: 181 PLGGTLDLSPILAFLVLNAFTSTAAALPAELPAPNSSLANPTPLKGSVDLTTSQKKWMRR 240
           PLGGTLDLSPILAFLVLNAFTSTAAALPAELPAPNSSLANPTPL+GSVDL  SQKKWMRR
Sbjct: 181 PLGGTLDLSPILAFLVLNAFTSTAAALPAELPAPNSSLANPTPLEGSVDLPASQKKWMRR 240

Query: 241 LQGSGKNNADAAR 254
           LQGSGK  ADAA+
Sbjct: 241 LQGSGKKKADAAQ 253

[Close]

BLAST of HG10004306 vs. NCBI nr
Match: XP_008445540.1 (PREDICTED: ylmG homolog protein 2, chloroplastic [Cucumis melo] >KAA0064706.1 ylmG-like protein 2 [Cucumis melo var. makuwa] >TYK00724.1 ylmG-like protein 2 [Cucumis melo var. makuwa])

HSP 1 Score: 451.8 bits (1161), Expect = 3.8e-123
Identity = 231/251 (92.03%), Postives = 236/251 (94.02%), Query Frame = 0


Query: 1   MTPDEPSLLNTRRSSTAFNFFPNCISSFSPAFSQTPSGASRRRHAEFIPPCNFLRDLHES 60
           MTP E SL N +R+STAFNFFPNCISSFSPAFSQTPSG SRRR  EF  PCNFLRDLHES
Sbjct: 1   MTPHESSLQNPKRTSTAFNFFPNCISSFSPAFSQTPSGPSRRRQPEFASPCNFLRDLHES 60

Query: 61  FASTTESCIRFFDSLASENPFLNKLLSLPSEFQSFRHQIHGMNSRNFRALSSHNFAAVLP 120
           FASTTESCIR F S ASENPFL+KLLSLPSEFQSFR QIH MNSRNFRALSSHNFAAVLP
Sbjct: 61  FASTTESCIRLFHSFASENPFLHKLLSLPSEFQSFRFQIHSMNSRNFRALSSHNFAAVLP 120

Query: 121 GDSMAGLVVANGIQNFLSLYNTLLVVRLVLTWFPNTPPAIVSPLSTLCDPYLNIFRGIIP 180
           GDSMAGLVVANGIQNFLSLYNTLLVVRLVLTWFPNTPPAIVSPLSTLCDPYLNIFRGIIP
Sbjct: 121 GDSMAGLVVANGIQNFLSLYNTLLVVRLVLTWFPNTPPAIVSPLSTLCDPYLNIFRGIIP 180

Query: 181 PLGGTLDLSPILAFLVLNAFTSTAAALPAELPAPNSSLANPTPLKGSVDLTTSQKKWMRR 240
           PLGGTLDLSPILAFLVLNAFTSTAAALPAELPAPNSSLANP PL+GSVDLT+SQKKWMRR
Sbjct: 181 PLGGTLDLSPILAFLVLNAFTSTAAALPAELPAPNSSLANPNPLEGSVDLTSSQKKWMRR 240

Query: 241 LQGSGKNNADA 252
           LQGSGKNNADA
Sbjct: 241 LQGSGKNNADA 251

[Close]

BLAST of HG10004306 vs. NCBI nr
Match: XP_004144214.1 (ylmG homolog protein 2, chloroplastic [Cucumis sativus] >KGN47583.1 hypothetical protein Csa_019073 [Cucumis sativus])

HSP 1 Score: 446.0 bits (1146), Expect = 2.1e-121
Identity = 227/253 (89.72%), Postives = 237/253 (93.68%), Query Frame = 0


Query: 1   MTPDEPSLLNTRRSSTAFNFFPNCISSFSPAFSQTPSGASRRRHAEFIPPCNFLRDLHES 60
           MTP + SL N +++STAFNFFPNCISSFSPAFSQTPSG SRRR  EF PPCNFLR LHES
Sbjct: 1   MTPHDSSLQNPKQTSTAFNFFPNCISSFSPAFSQTPSGPSRRRQLEFAPPCNFLRHLHES 60

Query: 61  FASTTESCIRFFDSLASENPFLNKLLSLPSEFQSFRHQIHGMNSRNFRALSSHNFAAVLP 120
           FASTTESCIR F SLASENPFL+KLLSLPSEF  FR+QIHGMNS NFRALSSHNFAAVLP
Sbjct: 61  FASTTESCIRLFHSLASENPFLHKLLSLPSEFHRFRYQIHGMNSMNFRALSSHNFAAVLP 120

Query: 121 GDSMAGLVVANGIQNFLSLYNTLLVVRLVLTWFPNTPPAIVSPLSTLCDPYLNIFRGIIP 180
           GDSMAGLVVANGIQNFLSLYNTLLVVRLVLTWFPNTPPAIVSPLSTLCDPYLNIFRGIIP
Sbjct: 121 GDSMAGLVVANGIQNFLSLYNTLLVVRLVLTWFPNTPPAIVSPLSTLCDPYLNIFRGIIP 180

Query: 181 PLGGTLDLSPILAFLVLNAFTSTAAALPAELPAPNSSLANPTPLKGSVDLTTSQKKWMRR 240
           PLGGTLDLSPILAFLVLNAFTSTAAALPAELPAPNSSLANP PLKGSVDLT+SQKKWM+R
Sbjct: 181 PLGGTLDLSPILAFLVLNAFTSTAAALPAELPAPNSSLANPNPLKGSVDLTSSQKKWMKR 240

Query: 241 LQGSGKNNADAAR 254
           LQGS KNNADA++
Sbjct: 241 LQGSEKNNADASQ 253

[Close]

BLAST of HG10004306 vs. NCBI nr
Match: KAG7029531.1 (YlmG-like protein 2, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 442.6 bits (1137), Expect = 2.3e-120
Identity = 223/253 (88.14%), Postives = 234/253 (92.49%), Query Frame = 0


Query: 1   MTPDEPSLLNTRRSSTAFNFFPNCISSFSPAFSQTPSGASRRRHAEFIPPCNFLRDLHES 60
           MTPDE S+LN RRSSTAF+FFPNCISSFSPAFSQTP GASRRRH +F+PPC FLRDLHES
Sbjct: 1   MTPDESSVLNPRRSSTAFSFFPNCISSFSPAFSQTPFGASRRRHVDFVPPCKFLRDLHES 60

Query: 61  FASTTESCIRFFDSLASENPFLNKLLSLPSEFQSFRHQIHGMNSRNFRALSSHNFAAVLP 120
           FA T E CI FF SLASENPFLNKL+SL SE QSF HQIHGMNSRNFRALSSHNFAAVLP
Sbjct: 61  FALTAEKCIVFFHSLASENPFLNKLMSLSSELQSFHHQIHGMNSRNFRALSSHNFAAVLP 120

Query: 121 GDSMAGLVVANGIQNFLSLYNTLLVVRLVLTWFPNTPPAIVSPLSTLCDPYLNIFRGIIP 180
           GDS+AGL+V NGIQNFLS+YNTLLVVRLVLTWFPNTPPAIVSPLSTLCDPYLNIFRGIIP
Sbjct: 121 GDSVAGLLVTNGIQNFLSIYNTLLVVRLVLTWFPNTPPAIVSPLSTLCDPYLNIFRGIIP 180

Query: 181 PLGGTLDLSPILAFLVLNAFTSTAAALPAELPAPNSSLANPTPLKGSVDLTTSQKKWMRR 240
           PLGGTLDLSPILAFLVLNAFTSTAAALPAELP PNSSLAN TP KGS DLTTSQKKW+RR
Sbjct: 181 PLGGTLDLSPILAFLVLNAFTSTAAALPAELPVPNSSLANATPSKGSFDLTTSQKKWIRR 240

Query: 241 LQGSGKNNADAAR 254
           LQGSG+N AD+AR
Sbjct: 241 LQGSGENKADSAR 253

[Close]

BLAST of HG10004306 vs. NCBI nr
Match: XP_022961827.1 (ylmG homolog protein 2, chloroplastic [Cucurbita moschata])

HSP 1 Score: 439.9 bits (1130), Expect = 1.5e-119
Identity = 221/253 (87.35%), Postives = 234/253 (92.49%), Query Frame = 0


Query: 1   MTPDEPSLLNTRRSSTAFNFFPNCISSFSPAFSQTPSGASRRRHAEFIPPCNFLRDLHES 60
           MTPDE S+LN RRSSTAF+FFPNCISSFSPAFSQTP GASRRRH +F+PPC FLRDLHES
Sbjct: 1   MTPDESSVLNPRRSSTAFSFFPNCISSFSPAFSQTPFGASRRRHVDFVPPCKFLRDLHES 60

Query: 61  FASTTESCIRFFDSLASENPFLNKLLSLPSEFQSFRHQIHGMNSRNFRALSSHNFAAVLP 120
           FA T E CI FF SLASENPFLNKL+SL SE QSF HQIHG+NSRNFRALSSHNFAAVLP
Sbjct: 61  FALTAEKCIVFFHSLASENPFLNKLMSLSSELQSFHHQIHGLNSRNFRALSSHNFAAVLP 120

Query: 121 GDSMAGLVVANGIQNFLSLYNTLLVVRLVLTWFPNTPPAIVSPLSTLCDPYLNIFRGIIP 180
           GDS+AGL+V NGIQNFLS+YNTLLVVRLVLTWFPNTPPAIVSPLSTLCDPYLNIFRGIIP
Sbjct: 121 GDSVAGLLVTNGIQNFLSIYNTLLVVRLVLTWFPNTPPAIVSPLSTLCDPYLNIFRGIIP 180

Query: 181 PLGGTLDLSPILAFLVLNAFTSTAAALPAELPAPNSSLANPTPLKGSVDLTTSQKKWMRR 240
           PLGGTLDLSPILAFLVLNAFTSTAAALPAELP PNSSLAN TP KGS DLT+SQKKW+RR
Sbjct: 181 PLGGTLDLSPILAFLVLNAFTSTAAALPAELPVPNSSLANATPSKGSFDLTSSQKKWIRR 240

Query: 241 LQGSGKNNADAAR 254
           LQGSG+N AD+AR
Sbjct: 241 LQGSGENKADSAR 253

[Close]

BLAST of HG10004306 vs. ExPASy Swiss-Prot
Match: Q9C595 (YlmG homolog protein 2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=YLMG2 PE=2 SV=1)

HSP 1 Score: 221.9 bits (564), Expect = 8.4e-57
Identity = 126/224 (56.25%), Postives = 154/224 (68.75%), Query Frame = 0


Query: 22  PNCISSFSPAFSQTPSGASRRRHAEFIPP----CNFLRDLHESFASTTESCIRFFDSLAS 81
           PN   S S AF+QTP   S + +   +PP       ++D H+S  S TE    F  SLAS
Sbjct: 22  PNFFVSLSSAFTQTPLVRSNKPNLLLLPPVADSVKLIQDFHQSLISATEKFKGFLHSLAS 81

Query: 82  ENPFLNKLLSLPSEFQSFRHQIHGMNSRNFR-ALSSHNFAAVLPGDSMAGLVVANGIQNF 141
           +NP   + + L SEF     +I   N+   R A+S+H FAAVLPGDS+AGLVVANG+ NF
Sbjct: 82  KNPLFQEAVRLSSEFHILCDEIRLRNTTRVRFAMSNHGFAAVLPGDSVAGLVVANGLINF 141

Query: 142 LSLYNTLLVVRLVLTWFPNTPPAIVSPLSTLCDPYLNIFRGIIPPLGGTLDLSPILAFLV 201
           L++YNT+LVVRLVLTWFP+ PPAIV+PLSTLCDPYLNIFRG IPPLGG LDLSPILAFLV
Sbjct: 142 LNIYNTILVVRLVLTWFPSAPPAIVNPLSTLCDPYLNIFRGFIPPLGG-LDLSPILAFLV 201

Query: 202 LNAFTSTAAALPAELPAPNSSLANPTPLKGSVDLTTSQKKWMRR 241
           LNAFTS+A ALP ELP+ +          G+V   +S+ KW+RR
Sbjct: 202 LNAFTSSAMALPCELPSAD----------GAVSPASSETKWVRR 234

[Close]

BLAST of HG10004306 vs. ExPASy Swiss-Prot
Match: Q9SRS3 (YlmG homolog protein 1-1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=YLMG1-1 PE=2 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 3.0e-14
Identity = 41/77 (53.25%), Postives = 56/77 (72.73%), Query Frame = 0


Query: 128 VVANGIQNFLSLYNTLLVVRLVLTWFPNTP--PAIVSPLSTLCDPYLNIFRGIIPPLGGT 187
           VVA GI+ +L +Y+ +L+VR++L+WFPN P     +S +  LCDPYLN+FR IIPP+  T
Sbjct: 149 VVAVGIKKWLDIYSGVLMVRVLLSWFPNIPWERQPLSAIRDLCDPYLNLFRNIIPPIFDT 208

Query: 188 LDLSPILAFLVLNAFTS 203
           LD+SP+LAF VL    S
Sbjct: 209 LDVSPLLAFAVLGTLGS 225

[Close]

BLAST of HG10004306 vs. ExPASy Swiss-Prot
Match: Q9SUE0 (YlmG homolog protein 1-2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=YLMG1-2 PE=2 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 6.8e-14
Identity = 40/77 (51.95%), Postives = 55/77 (71.43%), Query Frame = 0


Query: 128 VVANGIQNFLSLYNTLLVVRLVLTWFPNTP--PAIVSPLSTLCDPYLNIFRGIIPPLGGT 187
           VVA G+  +L +Y+ +L+VR++L+WFPN P     +S +  LCDPYLN+FR IIPP+  T
Sbjct: 135 VVAAGLSKWLDIYSGVLMVRVLLSWFPNIPWDRQPLSAIRDLCDPYLNLFRNIIPPVFDT 194

Query: 188 LDLSPILAFLVLNAFTS 203
           LD+SP+LAF VL    S
Sbjct: 195 LDVSPLLAFAVLGTLGS 211

[Close]

BLAST of HG10004306 vs. ExPASy Swiss-Prot
Match: O78424 (Uncharacterized protein ycf19 OS=Guillardia theta OX=55529 GN=ycf19 PE=3 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 3.2e-08
Identity = 33/64 (51.56%), Postives = 44/64 (68.75%), Query Frame = 0


Query: 136 FLSLYNTLLVVRLVLTWFPNTP--PAIVSPLSTLCDPYLNIFRGIIPPLGGTLDLSPILA 195
           FL +Y  LL++R+ LTWFPN          LS + DPYL +FRGI+PPL G +D+SPIL 
Sbjct: 15  FLQIYLILLLIRVSLTWFPNVNWYGQPFYSLSRITDPYLKMFRGIVPPLIG-IDISPILG 74

Query: 196 FLVL 198
           F++L
Sbjct: 75  FILL 77

[Close]

BLAST of HG10004306 vs. ExPASy Swiss-Prot
Match: P51353 (Uncharacterized protein ycf19 OS=Porphyra purpurea OX=2787 GN=ycf19 PE=3 SV=1)

HSP 1 Score: 50.4 bits (119), Expect = 3.4e-05
Identity = 28/72 (38.89%), Postives = 43/72 (59.72%), Query Frame = 0


Query: 128 VVANGIQNFLSLYNTLLVVRLVLTWFP--NTPPAIVSPLSTLCDPYLNIFRGIIPPLGGT 187
           ++   I NF  +Y  L++++L L WFP  N        L+ + DPYL +FRG IPP+ G 
Sbjct: 10  LLLGSIANFSEIYLILILLKLSLAWFPTVNWYNEPFCSLNRITDPYLKLFRGSIPPMFG- 69

Query: 188 LDLSPILAFLVL 198
           +D+SP+L  + L
Sbjct: 70  MDMSPMLGIIFL 80

[Close]

BLAST of HG10004306 vs. ExPASy TrEMBL
Match: A0A5D3BN87 (YlmG-like protein 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold187G00120 PE=4 SV=1)

HSP 1 Score: 451.8 bits (1161), Expect = 1.8e-123
Identity = 231/251 (92.03%), Postives = 236/251 (94.02%), Query Frame = 0


Query: 1   MTPDEPSLLNTRRSSTAFNFFPNCISSFSPAFSQTPSGASRRRHAEFIPPCNFLRDLHES 60
           MTP E SL N +R+STAFNFFPNCISSFSPAFSQTPSG SRRR  EF  PCNFLRDLHES
Sbjct: 1   MTPHESSLQNPKRTSTAFNFFPNCISSFSPAFSQTPSGPSRRRQPEFASPCNFLRDLHES 60

Query: 61  FASTTESCIRFFDSLASENPFLNKLLSLPSEFQSFRHQIHGMNSRNFRALSSHNFAAVLP 120
           FASTTESCIR F S ASENPFL+KLLSLPSEFQSFR QIH MNSRNFRALSSHNFAAVLP
Sbjct: 61  FASTTESCIRLFHSFASENPFLHKLLSLPSEFQSFRFQIHSMNSRNFRALSSHNFAAVLP 120

Query: 121 GDSMAGLVVANGIQNFLSLYNTLLVVRLVLTWFPNTPPAIVSPLSTLCDPYLNIFRGIIP 180
           GDSMAGLVVANGIQNFLSLYNTLLVVRLVLTWFPNTPPAIVSPLSTLCDPYLNIFRGIIP
Sbjct: 121 GDSMAGLVVANGIQNFLSLYNTLLVVRLVLTWFPNTPPAIVSPLSTLCDPYLNIFRGIIP 180

Query: 181 PLGGTLDLSPILAFLVLNAFTSTAAALPAELPAPNSSLANPTPLKGSVDLTTSQKKWMRR 240
           PLGGTLDLSPILAFLVLNAFTSTAAALPAELPAPNSSLANP PL+GSVDLT+SQKKWMRR
Sbjct: 181 PLGGTLDLSPILAFLVLNAFTSTAAALPAELPAPNSSLANPNPLEGSVDLTSSQKKWMRR 240

Query: 241 LQGSGKNNADA 252
           LQGSGKNNADA
Sbjct: 241 LQGSGKNNADA 251

[Close]

BLAST of HG10004306 vs. ExPASy TrEMBL
Match: A0A1S3BDU1 (ylmG homolog protein 2, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103488523 PE=4 SV=1)

HSP 1 Score: 451.8 bits (1161), Expect = 1.8e-123
Identity = 231/251 (92.03%), Postives = 236/251 (94.02%), Query Frame = 0


Query: 1   MTPDEPSLLNTRRSSTAFNFFPNCISSFSPAFSQTPSGASRRRHAEFIPPCNFLRDLHES 60
           MTP E SL N +R+STAFNFFPNCISSFSPAFSQTPSG SRRR  EF  PCNFLRDLHES
Sbjct: 1   MTPHESSLQNPKRTSTAFNFFPNCISSFSPAFSQTPSGPSRRRQPEFASPCNFLRDLHES 60

Query: 61  FASTTESCIRFFDSLASENPFLNKLLSLPSEFQSFRHQIHGMNSRNFRALSSHNFAAVLP 120
           FASTTESCIR F S ASENPFL+KLLSLPSEFQSFR QIH MNSRNFRALSSHNFAAVLP
Sbjct: 61  FASTTESCIRLFHSFASENPFLHKLLSLPSEFQSFRFQIHSMNSRNFRALSSHNFAAVLP 120

Query: 121 GDSMAGLVVANGIQNFLSLYNTLLVVRLVLTWFPNTPPAIVSPLSTLCDPYLNIFRGIIP 180
           GDSMAGLVVANGIQNFLSLYNTLLVVRLVLTWFPNTPPAIVSPLSTLCDPYLNIFRGIIP
Sbjct: 121 GDSMAGLVVANGIQNFLSLYNTLLVVRLVLTWFPNTPPAIVSPLSTLCDPYLNIFRGIIP 180

Query: 181 PLGGTLDLSPILAFLVLNAFTSTAAALPAELPAPNSSLANPTPLKGSVDLTTSQKKWMRR 240
           PLGGTLDLSPILAFLVLNAFTSTAAALPAELPAPNSSLANP PL+GSVDLT+SQKKWMRR
Sbjct: 181 PLGGTLDLSPILAFLVLNAFTSTAAALPAELPAPNSSLANPNPLEGSVDLTSSQKKWMRR 240

Query: 241 LQGSGKNNADA 252
           LQGSGKNNADA
Sbjct: 241 LQGSGKNNADA 251

[Close]

BLAST of HG10004306 vs. ExPASy TrEMBL
Match: A0A0A0KDJ4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G362410 PE=4 SV=1)

HSP 1 Score: 446.0 bits (1146), Expect = 1.0e-121
Identity = 227/253 (89.72%), Postives = 237/253 (93.68%), Query Frame = 0


Query: 1   MTPDEPSLLNTRRSSTAFNFFPNCISSFSPAFSQTPSGASRRRHAEFIPPCNFLRDLHES 60
           MTP + SL N +++STAFNFFPNCISSFSPAFSQTPSG SRRR  EF PPCNFLR LHES
Sbjct: 1   MTPHDSSLQNPKQTSTAFNFFPNCISSFSPAFSQTPSGPSRRRQLEFAPPCNFLRHLHES 60

Query: 61  FASTTESCIRFFDSLASENPFLNKLLSLPSEFQSFRHQIHGMNSRNFRALSSHNFAAVLP 120
           FASTTESCIR F SLASENPFL+KLLSLPSEF  FR+QIHGMNS NFRALSSHNFAAVLP
Sbjct: 61  FASTTESCIRLFHSLASENPFLHKLLSLPSEFHRFRYQIHGMNSMNFRALSSHNFAAVLP 120

Query: 121 GDSMAGLVVANGIQNFLSLYNTLLVVRLVLTWFPNTPPAIVSPLSTLCDPYLNIFRGIIP 180
           GDSMAGLVVANGIQNFLSLYNTLLVVRLVLTWFPNTPPAIVSPLSTLCDPYLNIFRGIIP
Sbjct: 121 GDSMAGLVVANGIQNFLSLYNTLLVVRLVLTWFPNTPPAIVSPLSTLCDPYLNIFRGIIP 180

Query: 181 PLGGTLDLSPILAFLVLNAFTSTAAALPAELPAPNSSLANPTPLKGSVDLTTSQKKWMRR 240
           PLGGTLDLSPILAFLVLNAFTSTAAALPAELPAPNSSLANP PLKGSVDLT+SQKKWM+R
Sbjct: 181 PLGGTLDLSPILAFLVLNAFTSTAAALPAELPAPNSSLANPNPLKGSVDLTSSQKKWMKR 240

Query: 241 LQGSGKNNADAAR 254
           LQGS KNNADA++
Sbjct: 241 LQGSEKNNADASQ 253

[Close]

BLAST of HG10004306 vs. ExPASy TrEMBL
Match: A0A6J1HB64 (ylmG homolog protein 2, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111462476 PE=4 SV=1)

HSP 1 Score: 439.9 bits (1130), Expect = 7.3e-120
Identity = 221/253 (87.35%), Postives = 234/253 (92.49%), Query Frame = 0


Query: 1   MTPDEPSLLNTRRSSTAFNFFPNCISSFSPAFSQTPSGASRRRHAEFIPPCNFLRDLHES 60
           MTPDE S+LN RRSSTAF+FFPNCISSFSPAFSQTP GASRRRH +F+PPC FLRDLHES
Sbjct: 1   MTPDESSVLNPRRSSTAFSFFPNCISSFSPAFSQTPFGASRRRHVDFVPPCKFLRDLHES 60

Query: 61  FASTTESCIRFFDSLASENPFLNKLLSLPSEFQSFRHQIHGMNSRNFRALSSHNFAAVLP 120
           FA T E CI FF SLASENPFLNKL+SL SE QSF HQIHG+NSRNFRALSSHNFAAVLP
Sbjct: 61  FALTAEKCIVFFHSLASENPFLNKLMSLSSELQSFHHQIHGLNSRNFRALSSHNFAAVLP 120

Query: 121 GDSMAGLVVANGIQNFLSLYNTLLVVRLVLTWFPNTPPAIVSPLSTLCDPYLNIFRGIIP 180
           GDS+AGL+V NGIQNFLS+YNTLLVVRLVLTWFPNTPPAIVSPLSTLCDPYLNIFRGIIP
Sbjct: 121 GDSVAGLLVTNGIQNFLSIYNTLLVVRLVLTWFPNTPPAIVSPLSTLCDPYLNIFRGIIP 180

Query: 181 PLGGTLDLSPILAFLVLNAFTSTAAALPAELPAPNSSLANPTPLKGSVDLTTSQKKWMRR 240
           PLGGTLDLSPILAFLVLNAFTSTAAALPAELP PNSSLAN TP KGS DLT+SQKKW+RR
Sbjct: 181 PLGGTLDLSPILAFLVLNAFTSTAAALPAELPVPNSSLANATPSKGSFDLTSSQKKWIRR 240

Query: 241 LQGSGKNNADAAR 254
           LQGSG+N AD+AR
Sbjct: 241 LQGSGENKADSAR 253

[Close]

BLAST of HG10004306 vs. ExPASy TrEMBL
Match: A0A6J1K921 (ylmG homolog protein 2, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111492206 PE=4 SV=1)

HSP 1 Score: 433.7 bits (1114), Expect = 5.2e-118
Identity = 219/250 (87.60%), Postives = 230/250 (92.00%), Query Frame = 0


Query: 1   MTPDEPSLLNTRRSSTAFNFFPNCISSFSPAFSQTPSGASRRRHAEFIPPCNFLRDLHES 60
           MTPDE S+LN RRSSTAF+FFPNCISSFSPAFSQTP G SRRRH +F PP  FLRDLHES
Sbjct: 1   MTPDESSVLNPRRSSTAFSFFPNCISSFSPAFSQTPFGGSRRRHVDFFPPRKFLRDLHES 60

Query: 61  FASTTESCIRFFDSLASENPFLNKLLSLPSEFQSFRHQIHGMNSRNFRALSSHNFAAVLP 120
           FAST E CI FF SLASENPFL+KL+SL SEFQSF HQIHGMNSRNFRALSSHNFAAVLP
Sbjct: 61  FASTAEKCIVFFHSLASENPFLDKLMSLSSEFQSFHHQIHGMNSRNFRALSSHNFAAVLP 120

Query: 121 GDSMAGLVVANGIQNFLSLYNTLLVVRLVLTWFPNTPPAIVSPLSTLCDPYLNIFRGIIP 180
           GDS+AG++V NGIQNFLS+YNTLLVVRLVLTWFPNTPPAIVSPLSTLCDPYLNIFRGIIP
Sbjct: 121 GDSVAGILVTNGIQNFLSIYNTLLVVRLVLTWFPNTPPAIVSPLSTLCDPYLNIFRGIIP 180

Query: 181 PLGGTLDLSPILAFLVLNAFTSTAAALPAELPAPNSSLANPTPLKGSVDLTTSQKKWMRR 240
           PLGGTLDLSPILAFLVLNAFTSTAAALPAELP PNSSLAN TP KGS DLTTSQKKW+RR
Sbjct: 181 PLGGTLDLSPILAFLVLNAFTSTAAALPAELPVPNSSLANATPSKGSFDLTTSQKKWIRR 240

Query: 241 LQGSGKNNAD 251
           LQGSG+N AD
Sbjct: 241 LQGSGENKAD 250

[Close]

BLAST of HG10004306 vs. TAIR 10
Match: AT5G21920.1 (YGGT family protein )

HSP 1 Score: 221.9 bits (564), Expect = 6.0e-58
Identity = 126/224 (56.25%), Postives = 154/224 (68.75%), Query Frame = 0


Query: 22  PNCISSFSPAFSQTPSGASRRRHAEFIPP----CNFLRDLHESFASTTESCIRFFDSLAS 81
           PN   S S AF+QTP   S + +   +PP       ++D H+S  S TE    F  SLAS
Sbjct: 22  PNFFVSLSSAFTQTPLVRSNKPNLLLLPPVADSVKLIQDFHQSLISATEKFKGFLHSLAS 81

Query: 82  ENPFLNKLLSLPSEFQSFRHQIHGMNSRNFR-ALSSHNFAAVLPGDSMAGLVVANGIQNF 141
           +NP   + + L SEF     +I   N+   R A+S+H FAAVLPGDS+AGLVVANG+ NF
Sbjct: 82  KNPLFQEAVRLSSEFHILCDEIRLRNTTRVRFAMSNHGFAAVLPGDSVAGLVVANGLINF 141

Query: 142 LSLYNTLLVVRLVLTWFPNTPPAIVSPLSTLCDPYLNIFRGIIPPLGGTLDLSPILAFLV 201
           L++YNT+LVVRLVLTWFP+ PPAIV+PLSTLCDPYLNIFRG IPPLGG LDLSPILAFLV
Sbjct: 142 LNIYNTILVVRLVLTWFPSAPPAIVNPLSTLCDPYLNIFRGFIPPLGG-LDLSPILAFLV 201

Query: 202 LNAFTSTAAALPAELPAPNSSLANPTPLKGSVDLTTSQKKWMRR 241
           LNAFTS+A ALP ELP+ +          G+V   +S+ KW+RR
Sbjct: 202 LNAFTSSAMALPCELPSAD----------GAVSPASSETKWVRR 234

[Close]

BLAST of HG10004306 vs. TAIR 10
Match: AT5G21920.2 (YGGT family protein )

HSP 1 Score: 209.5 bits (532), Expect = 3.1e-54
Identity = 123/224 (54.91%), Postives = 149/224 (66.52%), Query Frame = 0


Query: 22  PNCISSFSPAFSQTPSGASRRRHAEFIPP----CNFLRDLHESFASTTESCIRFFDSLAS 81
           PN   S S AF+QTP   S + +   +PP       ++D H+S  S TE    F  SLAS
Sbjct: 22  PNFFVSLSSAFTQTPLVRSNKPNLLLLPPVADSVKLIQDFHQSLISATEKFKGFLHSLAS 81

Query: 82  ENPFLNKLLSLPSEFQSFRHQIHGMNSRNFR-ALSSHNFAAVLPGDSMAGLVVANGIQNF 141
           +NP              F+  I   N+   R A+S+H FAAVLPGDS+AGLVVANG+ NF
Sbjct: 82  KNPL-------------FQEAIRLRNTTRVRFAMSNHGFAAVLPGDSVAGLVVANGLINF 141

Query: 142 LSLYNTLLVVRLVLTWFPNTPPAIVSPLSTLCDPYLNIFRGIIPPLGGTLDLSPILAFLV 201
           L++YNT+LVVRLVLTWFP+ PPAIV+PLSTLCDPYLNIFRG IPPLGG LDLSPILAFLV
Sbjct: 142 LNIYNTILVVRLVLTWFPSAPPAIVNPLSTLCDPYLNIFRGFIPPLGG-LDLSPILAFLV 201

Query: 202 LNAFTSTAAALPAELPAPNSSLANPTPLKGSVDLTTSQKKWMRR 241
           LNAFTS+A ALP ELP+ +          G+V   +S+ KW+RR
Sbjct: 202 LNAFTSSAMALPCELPSAD----------GAVSPASSETKWVRR 221

[Close]

BLAST of HG10004306 vs. TAIR 10
Match: AT3G07430.1 (YGGT family protein )

HSP 1 Score: 80.5 bits (197), Expect = 2.2e-15
Identity = 41/77 (53.25%), Postives = 56/77 (72.73%), Query Frame = 0


Query: 128 VVANGIQNFLSLYNTLLVVRLVLTWFPNTP--PAIVSPLSTLCDPYLNIFRGIIPPLGGT 187
           VVA GI+ +L +Y+ +L+VR++L+WFPN P     +S +  LCDPYLN+FR IIPP+  T
Sbjct: 149 VVAVGIKKWLDIYSGVLMVRVLLSWFPNIPWERQPLSAIRDLCDPYLNLFRNIIPPIFDT 208

Query: 188 LDLSPILAFLVLNAFTS 203
           LD+SP+LAF VL    S
Sbjct: 209 LDVSPLLAFAVLGTLGS 225

[Close]

BLAST of HG10004306 vs. TAIR 10
Match: AT4G27990.1 (YGGT family protein )

HSP 1 Score: 79.3 bits (194), Expect = 4.8e-15
Identity = 40/77 (51.95%), Postives = 55/77 (71.43%), Query Frame = 0


Query: 128 VVANGIQNFLSLYNTLLVVRLVLTWFPNTP--PAIVSPLSTLCDPYLNIFRGIIPPLGGT 187
           VVA G+  +L +Y+ +L+VR++L+WFPN P     +S +  LCDPYLN+FR IIPP+  T
Sbjct: 135 VVAAGLSKWLDIYSGVLMVRVLLSWFPNIPWDRQPLSAIRDLCDPYLNLFRNIIPPVFDT 194

Query: 188 LDLSPILAFLVLNAFTS 203
           LD+SP+LAF VL    S
Sbjct: 195 LDVSPLLAFAVLGTLGS 211

The following BLAST results are available for this feature:

BLAST of HG10004306 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038884266.1	3.9e-128	93.28	ylmG homolog protein 2, chloroplastic [Benincasa hispida]	[more]
XP_008445540.1	3.8e-123	92.03	PREDICTED: ylmG homolog protein 2, chloroplastic [Cucumis melo] >KAA0064706.1 yl...	[more]
XP_004144214.1	2.1e-121	89.72	ylmG homolog protein 2, chloroplastic [Cucumis sativus] >KGN47583.1 hypothetical...	[more]
KAG7029531.1	2.3e-120	88.14	YlmG-like protein 2, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_022961827.1	1.5e-119	87.35	ylmG homolog protein 2, chloroplastic [Cucurbita moschata]	[more]

BLAST of HG10004306 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9C595	8.4e-57	56.25	YlmG homolog protein 2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=YLMG2 P...	[more]
Q9SRS3	3.0e-14	53.25	YlmG homolog protein 1-1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=YLMG1...	[more]
Q9SUE0	6.8e-14	51.95	YlmG homolog protein 1-2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=YLMG1...	[more]
O78424	3.2e-08	51.56	Uncharacterized protein ycf19 OS=Guillardia theta OX=55529 GN=ycf19 PE=3 SV=1	[more]
P51353	3.4e-05	38.89	Uncharacterized protein ycf19 OS=Porphyra purpurea OX=2787 GN=ycf19 PE=3 SV=1	[more]

BLAST of HG10004306 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BN87	1.8e-123	92.03	YlmG-like protein 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold187G...	[more]
A0A1S3BDU1	1.8e-123	92.03	ylmG homolog protein 2, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103488523 PE...	[more]
A0A0A0KDJ4	1.0e-121	89.72	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G362410 PE=4 SV=1	[more]
A0A6J1HB64	7.3e-120	87.35	ylmG homolog protein 2, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111462...	[more]
A0A6J1K921	5.2e-118	87.60	ylmG homolog protein 2, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC11149220...	[more]

BLAST of HG10004306 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G21920.1	6.0e-58	56.25	YGGT family protein	[more]
AT5G21920.2	3.1e-54	54.91	YGGT family protein	[more]
AT3G07430.1	2.2e-15	53.25	YGGT family protein	[more]
AT4G27990.1	4.8e-15	51.95	YGGT family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003425	CCB3/YggT	PFAM	PF02325	YGGT	coord: 136..199 e-value: 3.2E-15 score: 56.3
IPR003425	CCB3/YggT	PANTHER	PTHR33219	YLMG HOMOLOG PROTEIN 2, CHLOROPLASTIC	coord: 55..245
None	No IPR available	PANTHER	PTHR33219:SF1	YLMG HOMOLOG PROTEIN 2, CHLOROPLASTIC	coord: 55..245

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10004306.1	HG10004306.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0010020	chloroplast fission
biological_process	GO:0090143	nucleoid organization
cellular_component	GO:0016020	membrane