Cucsat.G9609.T20 (mRNA) Cucumber (B10) v3

Overview


Name	Cucsat.G9609.T20
Type	mRNA
Organism	Cucumis sativus L. var. sativus cv B10 (Cucumber (B10) v3)
Description	Transcription termination factor MTERF5
Location	ctg1673: 3377429 .. 3386280 (-)
RNA-Seq Expression	Cucsat.G9609.T20
Synteny	Cucsat.G9609.T20

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

AAGATTCATTCATCTCTATAGGGTGGGGAATGGGATGTTCGTGGAGCTCCAAAGCCCTAACCCTAACCCTAACCCTTCAATTTCTTCAATCCAATTCCCAAAATGTCCAAAATTTCCTCCACATTTCTTCTACATTTCATCCATAAACGTTTTCTCACCACCATTTCTACTTCTACATTGCCTTCCCCTCTATTTCTACCGTTCAATTCCTCAAAAATCCATCTGCCCTTTATTCAGGATCTCCTACTCCCAACGGTCCAAAGCTCCAATTCCATGAAATAGACATCCAGCAGTACGGAGCCATTATCGGTTTCTTGAAATCACATGGGTTCGAGAATCCACAGATCGCCAAGTTGGTTTCCAGGCAACCTTCGATCCTTCAATCCAGAGTCGCCACTCTGAAACCTAAATTTGAGATCCTTCAGGAAATCGGGTTCGTCGGTCCTTTACTTCCTAAGCTAATTCTGTCAAACCCTTCGGTTCTTCACAGGAGCTTAGATTCTCAGTTGAAACCATCATTTCGTATCATAAAGGAAATGCTTGTATCGGATGAAAAGGTAACTGCTGCTATTTTTCGTTGTACGTGGCTTCTAACTTATACTTCCAAGGGTACTATGCGATCTAACATTGATGTTTTGGTTAGTGAGGGAGTACCTTCTAGGAATATCGTGAAATTGATTGAATTGAACCCTAGAACTATTTTGCGAAAGGTTGATTTAATGATTCATGCAGTGGAAACAGTTAAAGAATCAGGGGTTGAACCAAAGGATGGTATGTTTCTTCATGCAGTTAGAGCAGTGCTTTCAATGAATGATTCAACTTGGAAGAAGAAAATAAATGTTATGAAGAGTTTAGGATGGTCTGAGAATGAGATTTTTACAGCATTTAAGAAATTTCCACCTTACTTCACATGTTCAGAGGAGAAAATGAGGGACGTTGCAGATTTCTGTTCCAACACTGCAATGTTAGATCCAGGAACTCTAATATCTTACCCTGTGTTATTCAAGTATTCAGTCGAGAAGCGGCTCCAACCGAGGTACAAAGTTCTTGAGGTTTTGAAGGTGAAAAATCTTCTTAAAATCAAAAAGATTGCTTCGGCATTTGTGAAAGGGGAAGGATATTTTGTGGAGAAATATGTAGTTAAGCATTTGGATGAAATCCCAAATCTGATGGACATATACCGTGGCAATGCTGCAGCCGAAACCAAATCTGTTGTATAGGATTGGAAAGCTTGAAGTTTAGATTTGAGCATCATGATCTTCAAAGGGGGAGAGAATTTTTGTGGTTATTGAGCCTTCTGTTTCAGCTAACATTGCTTCTTGAGCCTTTTCAGGTGGGAGAGTTGTGTTGTCTTTCCATCCAAATTAAGACAGGTAAATCTATTTGGTGTACATTTCTTCATAGACGTGTTAATCTTGAAATTGGAGGCCTTTTTGTTTTTCCCTTTCCTAATCTTTTACTCTTTGCTTGAACATTTGTAAGTTTGTAGACTAATTTAGAATCAAATGATATTGAAATAGAGGTGATTTTGTTCATTCATACTATGAGATGAGATGAGAGACATTAGACTTTTTGAATATTCTGAGTTGGACTCTTATTCTTTTGCTATTCCAAATAGATTTTCATATCTTGGGTAAATGACAAACATTGTCATGAAATTCATTTTTATTTAAACGGTTTGAAAATTTCAAACCACTAAAGCTTAATTATAAGGATCATCATAGGCAATATTCGTTAAACTTTCCCACCTCCGTTCGAGTTCTTTTTTTATTATATTTTGTAAATAGTTTGATGGTTGTGAAAATGTTTCCCGGTTATTTTTTCTTTCTTTTTATTCTTTTTATTGTTTTTTTTTCTTTTGGTAAATTCAAGGACTCGAGTCTTCAACTTTAGTGTCTTTATGTAATATGTATAAATAAAACTAATTAAGGTTTAATATTTGTAGGTAGCTTAGTGGTAACTGTGCTTGTCACATGTCAATAAAATTTTGGGATCTGGATTCGCCACTCTATATATATTTGAATGGTTCGATTGAACTTATTCTTAACTTTAGATTAGGGTAGGGAGTTTCGTCTATTAGCGTAAGTTCAATTCACGTAATTGAATATAGTATTGCCATACCATAATATTACATGTAACAACAAGATAAGTTTGATCTTACTTATTTTCTTTGTAGGTGAATGAAGACTTCCTATACTAACTTAAATATCCTAATGCAATAGGATTGGTACCGCATCGTGTGAGAATCTGTTTCACAAGTCAAGAAGAGAATAATCAAGACAAGACTCGCTAGGAAGGTCAAGCCTACAAGAACCTGTGGCAAACCCTAACTTCGGTGACATTCAAGCGCCAACGATATTCACAAAAGCAATGTCACGTATCCATACCCTATGATATTTTTGCAAAAATAAAAGAGTTCAAAAAAATATTTAAATGGATAAATTAGCATTTTTTATACCATTTAAAAGGTTTGTTATTTATATTATGTTTAGTTAGAAACACTTTTGTTATACTCAATGGTGCAAAAACTTGGTTTTTGAAAATATTGGTAGAGAAAACAATATATAGGTATATATGAACATTTTTCTATTGACGAGTACATCTACATGGTGCAAAGAGTACCATAAAATCGATATTGGATTTGCTTTCAGACTACTCCCAATTTACAATTGAGTAGACGTCGATAGGATACTATTGTGTTGTGGATGTTTTGTGAATGACGTCGTGGGCTGCTTGTTTTGCGAGAAATCTGTCATTTGCCAATTTATTTTATTGAGATGGACGTGGAAATGAAGAACATGAAGTTTGAGAGGAAATATTGGGATTTGAGGATGGAGAACTAGGTGAATTTTTTTTAGAGTATGAACATTTAAGGCAATTTTTCGTATTAACAATTAAAATAAAATTTTATCATTTATTCAAAGTAAACCTTTAAATTTGTAATTTTATTAGTCGGTCTCTCTCAGTTAATATTTTCTACTTTACCCTACTTTTGCCATTTGTTTATATTCTTACGTTATATAAATTTAGATGTATTTGTCATTTTTCTAAACAATGATATTAATTTTAGAATTAAACGATGAAAGTTATTTGTAAGTAAAATAAATAATGCATTTCCTAATAGGGATAATTAAAAAATATCTAATATCCATAACCATTCCTCCATTATTTGAAAGTAATTATTGAAATAAAATTATGTATCTATATAAATAATAAAAATAATATACGAACTTCAAAATTCCATATCAAAATTCAACTTTTTAAGCTTTTAAATTTTATTTTCTTAAGTTTTACTCAAGGAAGGAAATTCGTCTTTTCTTCGCACGAAAAATATAAATTCATCTTTTAACAAAAGATAAAAGAAAAGTTCTAATATATTCCTTTATTTTTATTATTTAAGCCAAAATATAATATTCTTTTTATTTTTAATTAGGTAAATAAACAAAATTTTTCTTTTTCTTTTTACATATATATTAAAAATAAAATTTATATTTATTCGCTCAAAACAAAATTTATTAACTACTTAGATTAAATAATATTTTTTAATACAAAAATTATAAACAAAATTTCATTTTAATATTTAATTTATTTGACTTATCTTTCAAAAACTATAATAATAATTTAAAAAACATTTTAAAATAAAGGGTGCGATTTTAGGCGATGGGCCAAACAACCCCAATTGGGGATAGATGTTCGCTTCGTTGAGCTCAAAACCCTAACCAAAACCCTTTCTTCCTTTTCTTCATTCCAAACCCCAATATGTCCAAAATTTCCTCCACACTTCTTCTACATTTCATCCATAAACGTTTTCTCAATACCATTTCTACTTCTACATTGCCTTCACCCTCTCTTTCTACCATCCAATTCCTCACTAATTCATGCGGCCTTTCTTCTGGATCTCCTACCTCCGCCGGTCGAAAGCTCCATTTCGATGAAAAACACATCCACCAGTACGGAGCCATCATCGGTTTCTTCAAATCTCATGGATTCGAGTATCCACAGATCTCCAATTTGATCTCGAGGCGACCTTCGATCCTTCAATCCAGAGTATCCACCAATCTGAAGCCTAAATTTGAGTTCCTTCAGGAAATCGGGTTCGTCGGTCCTTTACTTCATAAGTTAATTTTATCAACCCCATGGGTGCTTAGCAAAAGCTTAGATTCCCAGTTGAAACCATCATTTTTTTTCATTAAGGAAATTCTTGAATCGGATGAACAAGTAACTGCTGCTGTTATTTATCGTTTTCCAAGCCTTCTAATTAGTGATTGGCGGGGTAATTTTAAATCTAGCTCTGATATTTTGGCCAGTGAAGGAGTACCTTCTAGGAATATAAAGAAGATGATTGCATTGAACCCTAGAACTTTTATGCAAAAGGCTGATAGAATGATTGATGCAGTGAAAACGGTTAAAGAATTAGGCATTGAACCAAAGGCTCGCATGTTTATTTATGCACTTTTTGTAAGGCTTTCAATGAATGATTCAACTTGGAAGAAGAAAATAAATGTTATGAAGAGTTTAGGATGGTCTGAGAAGGAGATTTTTTCAGCATTTAAGAGATATCCATTTTATTTAACATGCTCAGAGGAGAAATTGAGGGATGTTGCAGATTTTTGTTTGAACGCTGCAAAGTTGGATCCAGTAACTCTAATTACTTACCCTGAGTTCTTCAAGTCTTCAATCGAGAAGCGGCTCCAACCGAGGTACAAAGTTCTTGAGGTTTTGAAGGTGAAAAATCTTCTTAAAATAAAAAAGATTGGTCCGGTGCTTTTACGAGGGGAGAGAGAATTTGTGGAGAAATATGTAGTTAAGCATTTGGATGAAATCCCAAATCTGATGGACATATACCGTGGCAATGTCGCAGCCGAAACCAAAAGTGTTGTATAGGATTGGAAAGTTGTAAGTTAACAATGTTCTTATAGTTTAAATTTGAGCATCATGATCTTCAAAAGGGGAGAGCATTTTTGTTGTTATTGAGCCTACTGTTCTGTTTCAAACAACACTACCTCTTGAGCTTTTCAAAATCTCTCTCTCTCTCTCTCTCTGTGTGTTTTCAGGTGGAGAGTTGTGTTGTTTTTGCATCCAAATCAAGGCAGTTAGGTACGTAAATCTATTTGATGTATATTTTGTTCATAGACATGTTAAACTTGAAATTGGAGGCCTTTCTGCTTCAACTTTTGTAAGTTTGTAGACTAATTTTTGAATCTAATGATCTTGAAATAGGGGTAGCTTTTTTTCATTCCTATTGTGAGATGACAGACATTAGAGTTATAGATAAACTTCACACACTTTCAACTATACCCTCCCGCTCTCAACATACTACAAAATCTCAAAACCTCATTCTTCCATTTATGTGTTCTCTCCCTGTAATTATCCTCTTCATCGTTCCAATCCCAACAATTAATATGTTTACAGCACTTCCGACCACCGTAATCCTTTTTCTGACCTCGAAATCTTATTCCTAACCCAAAAATACCAACCAAACTACCTAACTCTCCGGCCACATTCTGCCATATAATTTCTTAATTTCACCTCACAAATCTTAAAAAATCCAAGCCCTTCCATCTTTCAAATTGGCTGCCAAAATTTTAAATAAGCCAATCCAGGTTTCTTCACAGTGAGGGAAAAATTCCAACTTTCTTTTGATATAAACTCTCAAGATTTTCATTTGTTGCAGCAAGTTTCTAGAGAGGACCAAATAAAGAAAAGGTTTAAAATTAGATAAGTTTCCTTTTTCTAAAACAATTTTTAAGTTTAGTTTTGAAAATTGGAAATATGGAAACTTTTGAATTAAACCAATGGTTAAAACAATCATTTGCAAAATTAAAAGTTTAATTAACGATCAAAAGGGTGTAGATGGTCATCAAACAAGATCAACAACATTGATTACATGTAACAAGAAAGAACGATAGAAAAAACATAATTGAAAAATGGAGAGAAAACAAATATAAATAAATTAACTAAAAGGGAAAATTGAAATGATTATAACCAAATATGTAATTGATTCTTAGTTTAATTTTATAATCACCACTTTTCTTCATACATTTTAAATTTTACCTTAATTATATTATTTAACCTATATTACATATAGTTATTTGAAAAGGGAAAACAAACAAACAAATAAATCCTAATTAATAAAAACTAATTTCACTTTTCCTTTTTTATTAACAAAATTTGAGTAAAATGTGAGTTCTTATTTCATCCTTCCTTACCCTTTTCTTTTTTAAGGAAAAAAGTAAATTAAACATATATGTATATATATTCATTAATTTAAAAGTAGAATATGATTTAAACATTCTAAGATGATCAATAGTTAAAACCAGCCATTCTTGCACATGGTGACATTTCTTGTTAAAGGGAAAACCAAATTAGACAAAAACATTTTTAAAAAGATAACTTATGATATATATATATTTTTTGCATATCGGTAAAATTAGTGATATCATAGGACTATTAGACACCAATTAAATGACTATTGTTATTGACTCTTAAATTTTACTTTTAAAATTTAGAAAATGTAGTGACATGAATTTTATTATCATAATTTTTTTTTTTTTTTTTACTATTTTTGTAAAAATCCCAATATAATGTCAGAATCTAAAGAACAAGATACACAGGAAGAAAAGCATAGCAATAAGTGTAATTATTCCTTATAGTTTACACAGCGTAACGAGAGACTGTTTAGAGGTTCTAAAGCCAAGTTCTCATGTTGCATACTATAGTCGATAAAAGTCTCATTGGTAATCCTAAAATGGCTCAAGAAAGTTATCAAGGGAAGAGAATACAATTTCTTTTTCACACTTTAGATAAAAGTTTAATTTATTATTAAGGATAGTTGCAAATTTAGCAATTAGATTCAAAACAATTAACATTATAGCAACATTTTAAAAATTTTGCAAATATAGCAAAATTTGTCAAATTCTACTCATGATAAACTATGTTGCATTATTATTCCGGGTCAATTTCAATTTTGGTTATTATTAATAGATTTTTTTTTTTTTTTTTTTGTTTGGGTGTGGTTTAGGTGAAGGCTAGGTGACTAAGTGTGACGACGAGAAATGTGAAAGAATTGAGAGAACAACAGAATACACAAAAGGAAGAGTCGGGCGATGGGCCAAACAGACCCAGTGGCTTTTCTGCTCTCTGTGGGGATCTTCGCTTCGTTGAGCTCAAAACCCTAACCAAAACCCACCCTTCATTTTCTTCATTTTCTTCATTTTCTTCGTTCCAAATCACAATATGTCCAAATTTTCCTCCACATCTCTTCTACATTTCATCCATAAACGTTTTCTTAATACCATTTCTACTTCTACGTTGCCTTCACCCTCTTTTTCTACCATCCAGTTCCTCACTAATTCATGCGGCCTTTCTTCAGGATCTCCTACCTCCGGCGGTCGAAAGCTCCAATTCGATGAAAAACACATCCACCAGTACGAAGCCATTATCGGTTTCTTGAAATCTCATGGATTCCAGTATCCACAGATCGCCAAATTGATCTCGAGGCGACCTTCGATCCTTCAATCCAAAGTATCCAACAATCTGAAGCCTAAATTTGAGTTCCTTCAGGAAATCGGGTTCGTCGGTCCTTTACTTCATAAGTTACTTCTATCAACCCCATGGGTTCTTGGCAGCAGCTTAGATTCTCAGTTGAAACCATCTTTTTTTGTCATAAAGGAAATGCTTGAATCGGATGAACAAGTAATTGCTGCTATTTCTCGTTTTCCAAGCCTACTAATTTATAATTTGAAGGGTAATTTTAAATCTATCTCTGATATTTTGGCCAGTGAAGGAGTACCTTCTAGGAATATAGCGAAAATGATTGCATTGAACCCTAGAACTTCTATGCAAAAGGCTGATAGAATGATTCTTGCAGTGAAAACGGTTAAAGAATCAGGCATTGAACCAAAGGCTCCCATGTTTATTTATGCACTTTTTGTAAGGCTTTCAATGAACGAATCAACTTGGAAGAAGAAAATAAATGTTTTGAAGAGTTTAGGATGGTCTGAGAATGAGATTTTTTCAGCATTTAAGAAATATCCATATTATTTAACTTGTTCAGAGGAGAAATTGAGGAATGTTGCAGATTTCTGTTTCAACACTGCAAAGTTGGATAGAGAAACTCTAATTACTTACCCTATGTTCTTCAACACTTCACTCGACAAGCGGCTCTATCCGAGGTACAAAGTTCTTGAGGTTTTGAAGGTAAAAAATCTTCTTAAGAACACAAAGATTGCTCGGGTTATTTTACTACGAGGGGAGAAAGAATTTATGGAGAAATACGTAGTTAAGCATTTGGATGAAATCCCAAATCTGATGGACATATACAGAGGCAATGTTGCAGCCGAAACCAAATCTGTTCTATAGGATTGCAAAGATGTAAGTTAACAATGTTCTTATATTTTTGAATTTGAGCATCATGATCTTCAAAAGGGAGAGCACTTTTGTTGTTATTGAGCCTACTGTTCTGTTTCAAATAACACTGCTTCTTGAGCTTTTCAAGATCTCTCTCTGTGTTTTCAGGTGGGAGAGCTGTGTTGTTTTTGCATCCAAATTAAGGCTGTTAGTCAGGTAAATCTATTTGGTGTATATTTCTTTCTTTGGACATGTTAATCTTGAAATAGGAGGCCTTTTTGTTTTCCCCTTTTCTAATCTTTTACTCTTTCCTTGAACTTTTGTAAGTTTGTAGACTAATTTTGAATCTAATTGCGTTGAAATAGGGGTGGCTTTTTTTCATTCCTATTGTGGGATGACAAACATTAGACTTATAGATAAACTTCACACACTTCAAAAATTCAAGTCCTTCATCTTTCAACACAAATATACACCTTTTTGAGCCAATAGTTTTAAATAAGTCA

Coding sequence (CDS)

ATGTTTCTTCATGCAGTTAGAGCAGTGCTTTCAATGAATGATTCAACTTGGAAGAAGAAAATAAATGTTATGAAGAGTTTAGGATGGTCTGAGAAGGAGATTTTTTCAGCATTTAAGAGATATCCATTTTATTTAACTTGTTCAGAGGAGAAATTGAGGAATGTTGCAGATTTCTGTTTCAACACTGCAAAGTTGGATAGAGAAACTCTAATTACTTACCCTATGTTCTTCAACACTTCACTCGACAAGCGGCTCTATCCGAGGTACAAAGTTCTTGAGGTTTTGAAGGTAAAAAATCTTCTTAAGAACACAAAGATTGCTCGGGTTATTTTACTACGAGGGGAGAAAGAATTTATGGAGAAATACGTAGTTAAGCATTTGGATGAAATCCCAAATCTGATGGACATATACAGAGGCAATGTTGCAGCCGAAACCAAATCTGTTCTATAG

Protein sequence

MFLHAVRAVLSMNDSTWKKKINVMKSLGWSEKEIFSAFKRYPFYLTCSEEKLRNVADFCFNTAKLDRETLITYPMFFNTSLDKRLYPRYKVLEVLKVKNLLKNTKIARVILLRGEKEFMEKYVVKHLDEIPNLMDIYRGNVAAETKSVL

Homology

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BLAST of Cucsat.G9609.T20 vs. NCBI nr
Match: XP_031741662.1 (transcription termination factor MTERF9, chloroplastic [Cucumis sativus] >KAE8648646.1 hypothetical protein Csa_008275 [Cucumis sativus])

HSP 1 Score: 278 bits (710), Expect = 1.40e-90
Identity = 138/149 (92.62%), Postives = 145/149 (97.32%), Query Frame = 0


Query: 1   MFLHAVRAVLSMNDSTWKKKINVMKSLGWSEKEIFSAFKRYPFYLTCSEEKLRNVADFCF 60
           MF++A+   LSMN+STWKKKINV+KSLGWSE EIFSAFK+YP+YLTCSEEKLRNVADFCF
Sbjct: 226 MFIYALFVRLSMNESTWKKKINVLKSLGWSENEIFSAFKKYPYYLTCSEEKLRNVADFCF 285

Query: 61  NTAKLDRETLITYPMFFNTSLDKRLYPRYKVLEVLKVKNLLKNTKIARVILLRGEKEFME 120
           NTAKLDRETLITYPMFFNTSLDKRLYPRYKVLEVLKVKNLLKNTKIARVILLRGEKEFME
Sbjct: 286 NTAKLDRETLITYPMFFNTSLDKRLYPRYKVLEVLKVKNLLKNTKIARVILLRGEKEFME 345

Query: 121 KYVVKHLDEIPNLMDIYRGNVAAETKSVL 149
           KYVVKHLDEIPNLMDIYRGNVAAETKSVL
Sbjct: 346 KYVVKHLDEIPNLMDIYRGNVAAETKSVL 374

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BLAST of Cucsat.G9609.T20 vs. NCBI nr
Match: XP_011655534.2 (transcription termination factor MTEF1, chloroplastic-like [Cucumis sativus] >KAE8648645.1 hypothetical protein Csa_007996 [Cucumis sativus])

HSP 1 Score: 241 bits (616), Expect = 2.31e-76
Identity = 124/149 (83.22%), Postives = 134/149 (89.93%), Query Frame = 0


Query: 1   MFLHAVRAVLSMNDSTWKKKINVMKSLGWSEKEIFSAFKRYPFYLTCSEEKLRNVADFCF 60
           MF++A+   LSMNDSTWKKKINVMKSLGWSEKEIFSAFKRYPFYLTCSEEKLR+VADFC 
Sbjct: 227 MFIYALFVRLSMNDSTWKKKINVMKSLGWSEKEIFSAFKRYPFYLTCSEEKLRDVADFCL 286

Query: 61  NTAKLDRETLITYPMFFNTSLDKRLYPRYKVLEVLKVKNLLKNTKIARVILLRGEKEFME 120
           N AKLD  TLITYP FF +S++KRL PRYKVLEVLKVKNLLK  KI  V LLRGE+EF+E
Sbjct: 287 NAAKLDPVTLITYPEFFKSSIEKRLQPRYKVLEVLKVKNLLKIKKIGPV-LLRGEREFVE 346

Query: 121 KYVVKHLDEIPNLMDIYRGNVAAETKSVL 149
           KYVVKHLDEIPNLMDIYRGNVAAETKSV+
Sbjct: 347 KYVVKHLDEIPNLMDIYRGNVAAETKSVV 374

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BLAST of Cucsat.G9609.T20 vs. NCBI nr
Match: XP_031741759.1 (transcription termination factor MTERF5, chloroplastic-like [Cucumis sativus])

HSP 1 Score: 230 bits (587), Expect = 1.78e-72
Identity = 115/148 (77.70%), Postives = 131/148 (88.51%), Query Frame = 0


Query: 2   FLHAVRAVLSMNDSTWKKKINVMKSLGWSEKEIFSAFKRYPFYLTCSEEKLRNVADFCFN 61
           F+HAV  VLSM+DS WKKKINVMKSLGWSE EIF+AFK++P YLTCSE+KLRNVADFCFN
Sbjct: 189 FVHAVTTVLSMSDSNWKKKINVMKSLGWSENEIFTAFKKFPPYLTCSEDKLRNVADFCFN 248

Query: 62  TAKLDRETLITYPMFFNTSLDKRLYPRYKVLEVLKVKNLLKNTKIARVILLRGEKEFMEK 121
           TAKLD  TLI+YP+ F  S++KRL PRYKVLEVLKVKNLLKN K A++   RGE+EF+E 
Sbjct: 249 TAKLDPGTLISYPVLFKYSVEKRLRPRYKVLEVLKVKNLLKNEKSAQLFF-RGEREFVEN 308

Query: 122 YVVKHLDEIPNLMDIYRGNVAAETKSVL 149
           Y+VKHLDEIPNLMDIYRGNVA+ETKSVL
Sbjct: 309 YIVKHLDEIPNLMDIYRGNVASETKSVL 335

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BLAST of Cucsat.G9609.T20 vs. NCBI nr
Match: XP_031742250.1 (uncharacterized protein LOC116404132 [Cucumis sativus] >XP_031742251.1 uncharacterized protein LOC116404132 [Cucumis sativus])

HSP 1 Score: 226 bits (577), Expect = 2.06e-72
Identity = 116/149 (77.85%), Postives = 129/149 (86.58%), Query Frame = 0


Query: 1   MFLHAVRAVLSMNDSTWKKKINVMKSLGWSEKEIFSAFKRYPFYLTCSEEKLRNVADFCF 60
           MFLHAVRAVLSMNDSTWKKKINVMKSLGWSE EIF+AFK++P Y TCSEEK+R+VADFC 
Sbjct: 80  MFLHAVRAVLSMNDSTWKKKINVMKSLGWSENEIFTAFKKFPPYFTCSEEKMRDVADFCS 139

Query: 61  NTAKLDRETLITYPMFFNTSLDKRLYPRYKVLEVLKVKNLLKNTKIARVILLRGEKEFME 120
           NTA LD  TLI+YP+ F  S++KRL PRYKVLEVLKVKNLLK  KIA   + +GE  F+E
Sbjct: 140 NTAMLDPGTLISYPVLFKYSVEKRLQPRYKVLEVLKVKNLLKIKKIASAFV-KGEGYFVE 199

Query: 121 KYVVKHLDEIPNLMDIYRGNVAAETKSVL 149
           KYVVKHLDEIPNLMDIYRGN AAETKSV+
Sbjct: 200 KYVVKHLDEIPNLMDIYRGNAAAETKSVV 227

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BLAST of Cucsat.G9609.T20 vs. NCBI nr
Match: XP_031741760.1 (transcription termination factor MTERF9, chloroplastic-like [Cucumis sativus])

HSP 1 Score: 229 bits (584), Expect = 3.77e-72
Identity = 115/148 (77.70%), Postives = 129/148 (87.16%), Query Frame = 0


Query: 2   FLHAVRAVLSMNDSTWKKKINVMKSLGWSEKEIFSAFKRYPFYLTCSEEKLRNVADFCFN 61
           F+HAV  VLSM+DS WKKKINVMKSLGWSEKEI +AFKRYP YLTCSEEK+R+VADFCFN
Sbjct: 179 FVHAVTTVLSMSDSAWKKKINVMKSLGWSEKEILTAFKRYPPYLTCSEEKMRDVADFCFN 238

Query: 62  TAKLDRETLITYPMFFNTSLDKRLYPRYKVLEVLKVKNLLKNTKIARVILLRGEKEFMEK 121
           TAKLD  TLI YP+ F  S+DKRL PRYKVLEVLKVKNLLKN K  ++   RGE++F+E 
Sbjct: 239 TAKLDPGTLIRYPVLFKYSVDKRLRPRYKVLEVLKVKNLLKNEKSVQLFF-RGERDFVEN 298

Query: 122 YVVKHLDEIPNLMDIYRGNVAAETKSVL 149
           Y+VKHLDEIPNLMDIYRGNVA+ETKSVL
Sbjct: 299 YIVKHLDEIPNLMDIYRGNVASETKSVL 325

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BLAST of Cucsat.G9609.T20 vs. ExPASy TrEMBL
Match: A0A1S3BH03 (uncharacterized protein LOC103489540 OS=Cucumis melo OX=3656 GN=LOC103489540 PE=3 SV=1)

HSP 1 Score: 223 bits (569), Expect = 1.74e-71
Identity = 115/148 (77.70%), Postives = 130/148 (87.84%), Query Frame = 0


Query: 2   FLHAVRAVLSMNDSTWKKKINVMKSLGWSEKEIFSAFKRYPFYLTCSEEKLRNVADFCFN 61
           F++AV AV SMN S+WKKKINVMKSLGWSEKEIF+AFKRYP  LTCSEEK+R+VADFCFN
Sbjct: 81  FVYAVSAVGSMNHSSWKKKINVMKSLGWSEKEIFTAFKRYPLCLTCSEEKMRDVADFCFN 140

Query: 62  TAKLDRETLITYPMFFNTSLDKRLYPRYKVLEVLKVKNLLKNTKIARV-ILLRGEKEFME 121
           TAKLD  TLI+YP+FFN S+DKRL PRYKVLEVLKVKNLLKN KIA     ++GE+EF++
Sbjct: 141 TAKLDPGTLISYPVFFNLSVDKRLRPRYKVLEVLKVKNLLKNKKIALTGWFMQGEREFVK 200

Query: 122 KYVVKHLDEIPNLMDIYRGNVAAETKSV 148
             VVKHLDEIPNLMDIYRGN A+ETKSV
Sbjct: 201 NNVVKHLDEIPNLMDIYRGNGASETKSV 228

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BLAST of Cucsat.G9609.T20 vs. ExPASy TrEMBL
Match: A0A1S4DWY9 (uncharacterized protein LOC107990789 OS=Cucumis melo OX=3656 GN=LOC107990789 PE=3 SV=1)

HSP 1 Score: 221 bits (562), Expect = 5.51e-71
Identity = 113/148 (76.35%), Postives = 130/148 (87.84%), Query Frame = 0


Query: 1   MFLHAVRAVLSMNDSTWKKKINVMKSLGWSEKEIFSAFKRYPFYLTCSEEKLRNVADFCF 60
           MF++AV   LS++DS W  KINV+KSLGWSEKEIF+AFK+ P YL CSE+K+R+VADFCF
Sbjct: 42  MFVYAVLIRLSLSDSNWTNKINVLKSLGWSEKEIFAAFKKDPNYLGCSEKKMRDVADFCF 101

Query: 61  NTAKLDRETLITYPMFFNTSLDKRLYPRYKVLEVLKVKNLLKNTKIARVILLRGEKEFME 120
           NTAKLD  T+I+YP+FF +S+DKRL PRYKVLEVLKVKNLLKN KIA V LL+GEK F+E
Sbjct: 102 NTAKLDPGTVISYPVFFKSSVDKRLRPRYKVLEVLKVKNLLKNKKIAGV-LLQGEKTFVE 161

Query: 121 KYVVKHLDEIPNLMDIYRGNVAAETKSV 148
           KYVVKHLDEIPNLMDIYRGNV AETKSV
Sbjct: 162 KYVVKHLDEIPNLMDIYRGNVEAETKSV 188

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BLAST of Cucsat.G9609.T20 vs. ExPASy TrEMBL
Match: A0A5D3CZB3 (Transcription termination factor MTERF5 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold35G002900 PE=3 SV=1)

HSP 1 Score: 226 bits (576), Expect = 1.18e-70
Identity = 114/148 (77.03%), Postives = 132/148 (89.19%), Query Frame = 0


Query: 1   MFLHAVRAVLSMNDSTWKKKINVMKSLGWSEKEIFSAFKRYPFYLTCSEEKLRNVADFCF 60
           MF++AV   LSM+DSTWKKKINVMKSLGWSEKEIF+AFKRYP YLTC+EEK+R+VADFCF
Sbjct: 226 MFVYAVIVRLSMSDSTWKKKINVMKSLGWSEKEIFTAFKRYPNYLTCTEEKMRDVADFCF 285

Query: 61  NTAKLDRETLITYPMFFNTSLDKRLYPRYKVLEVLKVKNLLKNTKIARVILLRGEKEFME 120
           NTAKLD   LI+YP  F  SLDKR+ PRYKVLEVLKVK+LL+N KIARV L +GE+EF++
Sbjct: 286 NTAKLDPGALISYPKLFKLSLDKRVQPRYKVLEVLKVKSLLRNVKIARV-LAQGEREFVK 345

Query: 121 KYVVKHLDEIPNLMDIYRGNVAAETKSV 148
            YVVK+LD+IPNLMDIYRGN+AAETKSV
Sbjct: 346 TYVVKYLDKIPNLMDIYRGNIAAETKSV 372

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BLAST of Cucsat.G9609.T20 vs. ExPASy TrEMBL
Match: A0A1S3BGD1 (transcription termination factor MTERF5, chloroplastic-like OS=Cucumis melo OX=3656 GN=LOC103489539 PE=3 SV=1)

HSP 1 Score: 226 bits (576), Expect = 1.18e-70
Identity = 114/148 (77.03%), Postives = 132/148 (89.19%), Query Frame = 0


Query: 1   MFLHAVRAVLSMNDSTWKKKINVMKSLGWSEKEIFSAFKRYPFYLTCSEEKLRNVADFCF 60
           MF++AV   LSM+DSTWKKKINVMKSLGWSEKEIF+AFKRYP YLTC+EEK+R+VADFCF
Sbjct: 226 MFVYAVIVRLSMSDSTWKKKINVMKSLGWSEKEIFTAFKRYPNYLTCTEEKMRDVADFCF 285

Query: 61  NTAKLDRETLITYPMFFNTSLDKRLYPRYKVLEVLKVKNLLKNTKIARVILLRGEKEFME 120
           NTAKLD   LI+YP  F  SLDKR+ PRYKVLEVLKVK+LL+N KIARV L +GE+EF++
Sbjct: 286 NTAKLDPGALISYPKLFKLSLDKRVQPRYKVLEVLKVKSLLRNVKIARV-LAQGEREFVK 345

Query: 121 KYVVKHLDEIPNLMDIYRGNVAAETKSV 148
            YVVK+LD+IPNLMDIYRGN+AAETKSV
Sbjct: 346 TYVVKYLDKIPNLMDIYRGNIAAETKSV 372

[Close]

BLAST of Cucsat.G9609.T20 vs. ExPASy TrEMBL
Match: A0A5D3CXX8 (Transcription termination factor MTERF2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold35G003080 PE=3 SV=1)

HSP 1 Score: 224 bits (571), Expect = 6.71e-70
Identity = 116/148 (78.38%), Postives = 128/148 (86.49%), Query Frame = 0


Query: 2   FLHAVRAVLSMNDSTWKKKINVMKSLGWSEKEIFSAFKRYPFYLTCSEEKLRNVADFCFN 61
           F++AV   LSM+DSTWKKKINVMKSLGWS+KEIF+AFKR+P YL CSEEK+R+VADFCFN
Sbjct: 227 FVYAVVVRLSMSDSTWKKKINVMKSLGWSDKEIFTAFKRHPNYLGCSEEKIRDVADFCFN 286

Query: 62  TAKLDRETLITYPMFFNTSLDKRLYPRYKVLEVLKVKNLLKNTKIARVILLRGEKEFMEK 121
           TAKLD  TLI+YP  F  S DKRL PRYKVLEVLKVKNLLKN KIA V L+ GE+ F+EK
Sbjct: 287 TAKLDPGTLISYPKLFKLSFDKRLRPRYKVLEVLKVKNLLKNKKIASV-LVEGERRFVEK 346

Query: 122 YVVKHLDEIPNLMDIYRGNVAAETKSVL 149
           YVVKHLDEIPNLMDIY GNV AETKSVL
Sbjct: 347 YVVKHLDEIPNLMDIYVGNVEAETKSVL 373

The following BLAST results are available for this feature:

BLAST of Cucsat.G9609.T20 vs.


Match Name	E-value	Identity	Description

BLAST of Cucsat.G9609.T20 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_031741662.1	1.40e-90	92.62	transcription termination factor MTERF9, chloroplastic [Cucumis sativus] >KAE864...	[more]
XP_011655534.2	2.31e-76	83.22	transcription termination factor MTEF1, chloroplastic-like [Cucumis sativus] >KA...	[more]
XP_031741759.1	1.78e-72	77.70	transcription termination factor MTERF5, chloroplastic-like [Cucumis sativus]	[more]
XP_031742250.1	2.06e-72	77.85	uncharacterized protein LOC116404132 [Cucumis sativus] >XP_031742251.1 uncharact...	[more]
XP_031741760.1	3.77e-72	77.70	transcription termination factor MTERF9, chloroplastic-like [Cucumis sativus]	[more]

BLAST of Cucsat.G9609.T20 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3BH03	1.74e-71	77.70	uncharacterized protein LOC103489540 OS=Cucumis melo OX=3656 GN=LOC103489540 PE=...	[more]
A0A1S4DWY9	5.51e-71	76.35	uncharacterized protein LOC107990789 OS=Cucumis melo OX=3656 GN=LOC107990789 PE=...	[more]
A0A5D3CZB3	1.18e-70	77.03	Transcription termination factor MTERF5 OS=Cucumis melo var. makuwa OX=1194695 G...	[more]
A0A1S3BGD1	1.18e-70	77.03	transcription termination factor MTERF5, chloroplastic-like OS=Cucumis melo OX=3...	[more]
A0A5D3CXX8	6.71e-70	78.38	Transcription termination factor MTERF2 OS=Cucumis melo var. makuwa OX=1194695 G...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (B10) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003690	Transcription termination factor, mitochondrial/chloroplastic	SMART	SM00733	mt_12	coord: 67..98 e-value: 0.94 score: 18.5 coord: 35..66 e-value: 120.0 score: 11.0 coord: 1..30 e-value: 190.0 score: 9.4
IPR003690	Transcription termination factor, mitochondrial/chloroplastic	PFAM	PF02536	mTERF	coord: 9..110 e-value: 1.3E-16 score: 60.4
IPR003690	Transcription termination factor, mitochondrial/chloroplastic	PANTHER	PTHR13068	CGI-12 PROTEIN-RELATED	coord: 1..141
IPR038538	MTERF superfamily, mitochondrial/chloroplastic	GENE3D	1.25.70.10	Transcription termination factor 3, mitochondrial	coord: 1..132 e-value: 3.4E-25 score: 90.7
None	No IPR available	PANTHER	PTHR13068:SF31	TRANSCRIPTION TERMINATION FACTOR MTERF15, MITOCHONDRIAL-LIKE	coord: 1..141

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cucsat.G9609	Cucsat.G9609	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cucsat.G9609.T20.E1	Cucsat.G9609.T20.E1	exon
Cucsat.G9609.T20.E2	Cucsat.G9609.T20.E2	exon
Cucsat.G9609.T20.E3	Cucsat.G9609.T20.E3	exon
Cucsat.G9609.T20.E4	Cucsat.G9609.T20.E4	exon
Cucsat.G9609.T20.E5	Cucsat.G9609.T20.E5	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cucsat.G9609.T20.C3	Cucsat.G9609.T20.C3	CDS
Cucsat.G9609.T20.C2	Cucsat.G9609.T20.C2	CDS
Cucsat.G9609.T20.C1	Cucsat.G9609.T20.C1	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cucsat.G9609.T20	Cucsat.G9609.T20-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
biological_process	GO:0006353	DNA-templated transcription, termination
molecular_function	GO:0003690	double-stranded DNA binding