Cucsat.G9609.T18 (mRNA) Cucumber (B10) v3

Overview


Name	Cucsat.G9609.T18
Type	mRNA
Organism	Cucumis sativus L. var. sativus cv B10 (Cucumber (B10) v3)
Description	Transcription termination factor MTERF5
Location	ctg1673: 3377429 .. 3386280 (-)
RNA-Seq Expression	Cucsat.G9609.T18
Synteny	Cucsat.G9609.T18

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

AAGATTCATTCATCTCTATAGGGTGGGGAATGGGATGTTCGTGGAGCTCCAAAGCCCTAACCCTAACCCTAACCCTTCAATTTCTTCAATCCAATTCCCAAAATGTCCAAAATTTCCTCCACATTTCTTCTACATTTCATCCATAAACGTTTTCTCACCACCATTTCTACTTCTACATTGCCTTCCCCTCTATTTCTACCGTTCAATTCCTCAAAAATCCATCTGCCCTTTATTCAGGATCTCCTACTCCCAACGGTCCAAAGCTCCAATTCCATGAAATAGACATCCAGCAGTACGGAGCCATTATCGGTTTCTTGAAATCACATGGGTTCGAGAATCCACAGATCGCCAAGTTGGTTTCCAGGCAACCTTCGATCCTTCAATCCAGAGTCGCCACTCTGAAACCTAAATTTGAGATCCTTCAGGAAATCGGGTTCGTCGGTCCTTTACTTCCTAAGCTAATTCTGTCAAACCCTTCGGTTCTTCACAGGAGCTTAGATTCTCAGTTGAAACCATCATTTCGTATCATAAAGGAAATGCTTGTATCGGATGAAAAGGTAACTGCTGCTATTTTTCGTTGTACGTGGCTTCTAACTTATACTTCCAAGGGTACTATGCGATCTAACATTGATGTTTTGGTTAGTGAGGGAGTACCTTCTAGGAATATCGTGAAATTGATTGAATTGAACCCTAGAACTATTTTGCGAAAGGTTGATTTAATGATTCATGCAGTGGAAACAGTTAAAGAATCAGGGGTTGAACCAAAGGATGGTATGTTTCTTCATGCAGTTAGAGCAGTGCTTTCAATGAATGATTCAACTTGGAAGAAGAAAATAAATGTTATGAAGAGTTTAGGATGGTCTGAGAATGAGATTTTTACAGCATTTAAGAAATTTCCACCTTACTTCACATGTTCAGAGGAGAAAATGAGGGACGTTGCAGATTTCTGTTCCAACACTGCAATGTTAGATCCAGGAACTCTAATATCTTACCCTGTGTTATTCAAGTATTCAGTCGAGAAGCGGCTCCAACCGAGGTACAAAGTTCTTGAGGTTTTGAAGGTGAAAAATCTTCTTAAAATCAAAAAGATTGCTTCGGCATTTGTGAAAGGGGAAGGATATTTTGTGGAGAAATATGTAGTTAAGCATTTGGATGAAATCCCAAATCTGATGGACATATACCGTGGCAATGCTGCAGCCGAAACCAAATCTGTTGTATAGGATTGGAAAGCTTGAAGTTTAGATTTGAGCATCATGATCTTCAAAGGGGGAGAGAATTTTTGTGGTTATTGAGCCTTCTGTTTCAGCTAACATTGCTTCTTGAGCCTTTTCAGGTGGGAGAGTTGTGTTGTCTTTCCATCCAAATTAAGACAGGTAAATCTATTTGGTGTACATTTCTTCATAGACGTGTTAATCTTGAAATTGGAGGCCTTTTTGTTTTTCCCTTTCCTAATCTTTTACTCTTTGCTTGAACATTTGTAAGTTTGTAGACTAATTTAGAATCAAATGATATTGAAATAGAGGTGATTTTGTTCATTCATACTATGAGATGAGATGAGAGACATTAGACTTTTTGAATATTCTGAGTTGGACTCTTATTCTTTTGCTATTCCAAATAGATTTTCATATCTTGGGTAAATGACAAACATTGTCATGAAATTCATTTTTATTTAAACGGTTTGAAAATTTCAAACCACTAAAGCTTAATTATAAGGATCATCATAGGCAATATTCGTTAAACTTTCCCACCTCCGTTCGAGTTCTTTTTTTATTATATTTTGTAAATAGTTTGATGGTTGTGAAAATGTTTCCCGGTTATTTTTTCTTTCTTTTTATTCTTTTTATTGTTTTTTTTTCTTTTGGTAAATTCAAGGACTCGAGTCTTCAACTTTAGTGTCTTTATGTAATATGTATAAATAAAACTAATTAAGGTTTAATATTTGTAGGTAGCTTAGTGGTAACTGTGCTTGTCACATGTCAATAAAATTTTGGGATCTGGATTCGCCACTCTATATATATTTGAATGGTTCGATTGAACTTATTCTTAACTTTAGATTAGGGTAGGGAGTTTCGTCTATTAGCGTAAGTTCAATTCACGTAATTGAATATAGTATTGCCATACCATAATATTACATGTAACAACAAGATAAGTTTGATCTTACTTATTTTCTTTGTAGGTGAATGAAGACTTCCTATACTAACTTAAATATCCTAATGCAATAGGATTGGTACCGCATCGTGTGAGAATCTGTTTCACAAGTCAAGAAGAGAATAATCAAGACAAGACTCGCTAGGAAGGTCAAGCCTACAAGAACCTGTGGCAAACCCTAACTTCGGTGACATTCAAGCGCCAACGATATTCACAAAAGCAATGTCACGTATCCATACCCTATGATATTTTTGCAAAAATAAAAGAGTTCAAAAAAATATTTAAATGGATAAATTAGCATTTTTTATACCATTTAAAAGGTTTGTTATTTATATTATGTTTAGTTAGAAACACTTTTGTTATACTCAATGGTGCAAAAACTTGGTTTTTGAAAATATTGGTAGAGAAAACAATATATAGGTATATATGAACATTTTTCTATTGACGAGTACATCTACATGGTGCAAAGAGTACCATAAAATCGATATTGGATTTGCTTTCAGACTACTCCCAATTTACAATTGAGTAGACGTCGATAGGATACTATTGTGTTGTGGATGTTTTGTGAATGACGTCGTGGGCTGCTTGTTTTGCGAGAAATCTGTCATTTGCCAATTTATTTTATTGAGATGGACGTGGAAATGAAGAACATGAAGTTTGAGAGGAAATATTGGGATTTGAGGATGGAGAACTAGGTGAATTTTTTTTAGAGTATGAACATTTAAGGCAATTTTTCGTATTAACAATTAAAATAAAATTTTATCATTTATTCAAAGTAAACCTTTAAATTTGTAATTTTATTAGTCGGTCTCTCTCAGTTAATATTTTCTACTTTACCCTACTTTTGCCATTTGTTTATATTCTTACGTTATATAAATTTAGATGTATTTGTCATTTTTCTAAACAATGATATTAATTTTAGAATTAAACGATGAAAGTTATTTGTAAGTAAAATAAATAATGCATTTCCTAATAGGGATAATTAAAAAATATCTAATATCCATAACCATTCCTCCATTATTTGAAAGTAATTATTGAAATAAAATTATGTATCTATATAAATAATAAAAATAATATACGAACTTCAAAATTCCATATCAAAATTCAACTTTTTAAGCTTTTAAATTTTATTTTCTTAAGTTTTACTCAAGGAAGGAAATTCGTCTTTTCTTCGCACGAAAAATATAAATTCATCTTTTAACAAAAGATAAAAGAAAAGTTCTAATATATTCCTTTATTTTTATTATTTAAGCCAAAATATAATATTCTTTTTATTTTTAATTAGGTAAATAAACAAAATTTTTCTTTTTCTTTTTACATATATATTAAAAATAAAATTTATATTTATTCGCTCAAAACAAAATTTATTAACTACTTAGATTAAATAATATTTTTTAATACAAAAATTATAAACAAAATTTCATTTTAATATTTAATTTATTTGACTTATCTTTCAAAAACTATAATAATAATTTAAAAAACATTTTAAAATAAAGGGTGCGATTTTAGGCGATGGGCCAAACAACCCCAATTGGGGATAGATGTTCGCTTCGTTGAGCTCAAAACCCTAACCAAAACCCTTTCTTCCTTTTCTTCATTCCAAACCCCAATATGTCCAAAATTTCCTCCACACTTCTTCTACATTTCATCCATAAACGTTTTCTCAATACCATTTCTACTTCTACATTGCCTTCACCCTCTCTTTCTACCATCCAATTCCTCACTAATTCATGCGGCCTTTCTTCTGGATCTCCTACCTCCGCCGGTCGAAAGCTCCATTTCGATGAAAAACACATCCACCAGTACGGAGCCATCATCGGTTTCTTCAAATCTCATGGATTCGAGTATCCACAGATCTCCAATTTGATCTCGAGGCGACCTTCGATCCTTCAATCCAGAGTATCCACCAATCTGAAGCCTAAATTTGAGTTCCTTCAGGAAATCGGGTTCGTCGGTCCTTTACTTCATAAGTTAATTTTATCAACCCCATGGGTGCTTAGCAAAAGCTTAGATTCCCAGTTGAAACCATCATTTTTTTTCATTAAGGAAATTCTTGAATCGGATGAACAAGTAACTGCTGCTGTTATTTATCGTTTTCCAAGCCTTCTAATTAGTGATTGGCGGGGTAATTTTAAATCTAGCTCTGATATTTTGGCCAGTGAAGGAGTACCTTCTAGGAATATAAAGAAGATGATTGCATTGAACCCTAGAACTTTTATGCAAAAGGCTGATAGAATGATTGATGCAGTGAAAACGGTTAAAGAATTAGGCATTGAACCAAAGGCTCGCATGTTTATTTATGCACTTTTTGTAAGGCTTTCAATGAATGATTCAACTTGGAAGAAGAAAATAAATGTTATGAAGAGTTTAGGATGGTCTGAGAAGGAGATTTTTTCAGCATTTAAGAGATATCCATTTTATTTAACATGCTCAGAGGAGAAATTGAGGGATGTTGCAGATTTTTGTTTGAACGCTGCAAAGTTGGATCCAGTAACTCTAATTACTTACCCTGAGTTCTTCAAGTCTTCAATCGAGAAGCGGCTCCAACCGAGGTACAAAGTTCTTGAGGTTTTGAAGGTGAAAAATCTTCTTAAAATAAAAAAGATTGGTCCGGTGCTTTTACGAGGGGAGAGAGAATTTGTGGAGAAATATGTAGTTAAGCATTTGGATGAAATCCCAAATCTGATGGACATATACCGTGGCAATGTCGCAGCCGAAACCAAAAGTGTTGTATAGGATTGGAAAGTTGTAAGTTAACAATGTTCTTATAGTTTAAATTTGAGCATCATGATCTTCAAAAGGGGAGAGCATTTTTGTTGTTATTGAGCCTACTGTTCTGTTTCAAACAACACTACCTCTTGAGCTTTTCAAAATCTCTCTCTCTCTCTCTCTCTGTGTGTTTTCAGGTGGAGAGTTGTGTTGTTTTTGCATCCAAATCAAGGCAGTTAGGTACGTAAATCTATTTGATGTATATTTTGTTCATAGACATGTTAAACTTGAAATTGGAGGCCTTTCTGCTTCAACTTTTGTAAGTTTGTAGACTAATTTTTGAATCTAATGATCTTGAAATAGGGGTAGCTTTTTTTCATTCCTATTGTGAGATGACAGACATTAGAGTTATAGATAAACTTCACACACTTTCAACTATACCCTCCCGCTCTCAACATACTACAAAATCTCAAAACCTCATTCTTCCATTTATGTGTTCTCTCCCTGTAATTATCCTCTTCATCGTTCCAATCCCAACAATTAATATGTTTACAGCACTTCCGACCACCGTAATCCTTTTTCTGACCTCGAAATCTTATTCCTAACCCAAAAATACCAACCAAACTACCTAACTCTCCGGCCACATTCTGCCATATAATTTCTTAATTTCACCTCACAAATCTTAAAAAATCCAAGCCCTTCCATCTTTCAAATTGGCTGCCAAAATTTTAAATAAGCCAATCCAGGTTTCTTCACAGTGAGGGAAAAATTCCAACTTTCTTTTGATATAAACTCTCAAGATTTTCATTTGTTGCAGCAAGTTTCTAGAGAGGACCAAATAAAGAAAAGGTTTAAAATTAGATAAGTTTCCTTTTTCTAAAACAATTTTTAAGTTTAGTTTTGAAAATTGGAAATATGGAAACTTTTGAATTAAACCAATGGTTAAAACAATCATTTGCAAAATTAAAAGTTTAATTAACGATCAAAAGGGTGTAGATGGTCATCAAACAAGATCAACAACATTGATTACATGTAACAAGAAAGAACGATAGAAAAAACATAATTGAAAAATGGAGAGAAAACAAATATAAATAAATTAACTAAAAGGGAAAATTGAAATGATTATAACCAAATATGTAATTGATTCTTAGTTTAATTTTATAATCACCACTTTTCTTCATACATTTTAAATTTTACCTTAATTATATTATTTAACCTATATTACATATAGTTATTTGAAAAGGGAAAACAAACAAACAAATAAATCCTAATTAATAAAAACTAATTTCACTTTTCCTTTTTTATTAACAAAATTTGAGTAAAATGTGAGTTCTTATTTCATCCTTCCTTACCCTTTTCTTTTTTAAGGAAAAAAGTAAATTAAACATATATGTATATATATTCATTAATTTAAAAGTAGAATATGATTTAAACATTCTAAGATGATCAATAGTTAAAACCAGCCATTCTTGCACATGGTGACATTTCTTGTTAAAGGGAAAACCAAATTAGACAAAAACATTTTTAAAAAGATAACTTATGATATATATATATTTTTTGCATATCGGTAAAATTAGTGATATCATAGGACTATTAGACACCAATTAAATGACTATTGTTATTGACTCTTAAATTTTACTTTTAAAATTTAGAAAATGTAGTGACATGAATTTTATTATCATAATTTTTTTTTTTTTTTTTACTATTTTTGTAAAAATCCCAATATAATGTCAGAATCTAAAGAACAAGATACACAGGAAGAAAAGCATAGCAATAAGTGTAATTATTCCTTATAGTTTACACAGCGTAACGAGAGACTGTTTAGAGGTTCTAAAGCCAAGTTCTCATGTTGCATACTATAGTCGATAAAAGTCTCATTGGTAATCCTAAAATGGCTCAAGAAAGTTATCAAGGGAAGAGAATACAATTTCTTTTTCACACTTTAGATAAAAGTTTAATTTATTATTAAGGATAGTTGCAAATTTAGCAATTAGATTCAAAACAATTAACATTATAGCAACATTTTAAAAATTTTGCAAATATAGCAAAATTTGTCAAATTCTACTCATGATAAACTATGTTGCATTATTATTCCGGGTCAATTTCAATTTTGGTTATTATTAATAGATTTTTTTTTTTTTTTTTTTGTTTGGGTGTGGTTTAGGTGAAGGCTAGGTGACTAAGTGTGACGACGAGAAATGTGAAAGAATTGAGAGAACAACAGAATACACAAAAGGAAGAGTCGGGCGATGGGCCAAACAGACCCAGTGGCTTTTCTGCTCTCTGTGGGGATCTTCGCTTCGTTGAGCTCAAAACCCTAACCAAAACCCACCCTTCATTTTCTTCATTTTCTTCATTTTCTTCGTTCCAAATCACAATATGTCCAAATTTTCCTCCACATCTCTTCTACATTTCATCCATAAACGTTTTCTTAATACCATTTCTACTTCTACGTTGCCTTCACCCTCTTTTTCTACCATCCAGTTCCTCACTAATTCATGCGGCCTTTCTTCAGGATCTCCTACCTCCGGCGGTCGAAAGCTCCAATTCGATGAAAAACACATCCACCAGTACGAAGCCATTATCGGTTTCTTGAAATCTCATGGATTCCAGTATCCACAGATCGCCAAATTGATCTCGAGGCGACCTTCGATCCTTCAATCCAAAGTATCCAACAATCTGAAGCCTAAATTTGAGTTCCTTCAGGAAATCGGGTTCGTCGGTCCTTTACTTCATAAGTTACTTCTATCAACCCCATGGGTTCTTGGCAGCAGCTTAGATTCTCAGTTGAAACCATCTTTTTTTGTCATAAAGGAAATGCTTGAATCGGATGAACAAGTAATTGCTGCTATTTCTCGTTTTCCAAGCCTACTAATTTATAATTTGAAGGGTAATTTTAAATCTATCTCTGATATTTTGGCCAGTGAAGGAGTACCTTCTAGGAATATAGCGAAAATGATTGCATTGAACCCTAGAACTTCTATGCAAAAGGCTGATAGAATGATTCTTGCAGTGAAAACGGTTAAAGAATCAGGCATTGAACCAAAGGCTCCCATGTTTATTTATGCACTTTTTGTAAGGCTTTCAATGAACGAATCAACTTGGAAGAAGAAAATAAATGTTTTGAAGAGTTTAGGATGGTCTGAGAATGAGATTTTTTCAGCATTTAAGAAATATCCATATTATTTAACTTGTTCAGAGGAGAAATTGAGGAATGTTGCAGATTTCTGTTTCAACACTGCAAAGTTGGATAGAGAAACTCTAATTACTTACCCTATGTTCTTCAACACTTCACTCGACAAGCGGCTCTATCCGAGGTACAAAGTTCTTGAGGTTTTGAAGGTAAAAAATCTTCTTAAGAACACAAAGATTGCTCGGGTTATTTTACTACGAGGGGAGAAAGAATTTATGGAGAAATACGTAGTTAAGCATTTGGATGAAATCCCAAATCTGATGGACATATACAGAGGCAATGTTGCAGCCGAAACCAAATCTGTTCTATAGGATTGCAAAGATGTAAGTTAACAATGTTCTTATATTTTTGAATTTGAGCATCATGATCTTCAAAAGGGAGAGCACTTTTGTTGTTATTGAGCCTACTGTTCTGTTTCAAATAACACTGCTTCTTGAGCTTTTCAAGATCTCTCTCTGTGTTTTCAGGTGGGAGAGCTGTGTTGTTTTTGCATCCAAATTAAGGCTGTTAGTCAGGTAAATCTATTTGGTGTATATTTCTTTCTTTGGACATGTTAATCTTGAAATAGGAGGCCTTTTTGTTTTCCCCTTTTCTAATCTTTTACTCTTTCCTTGAACTTTTGTAAGTTTGTAGACTAATTTTGAATCTAATTGCGTTGAAATAGGGGTGGCTTTTTTTCATTCCTATTGTGGGATGACAAACATTAGACTTATAGATAAACTTCACACACTTCAAAAATTCAAGTCCTTCATCTTTCAACACAAATATACACCTTTTTGAGCCAATAGTTTTAAATAAGTCA

Coding sequence (CDS)

ATGCTTGTATCGGATGAAAAGGTAACTGCTGCTATTTTTCGTTGTACGTGGCTTCTAACTTATACTTCCAAGGGTACTATGCGATCTAACATTGATGTTTTGGTTAGTGAGGGAGTACCTTCTAGGAATATCGTGAAATTGATTGAATTGAACCCTAGAACTATTTTGCGAAAGGTTGATTTAATGATTCATGCAGTGGAAACAGTTAAAGAATCAGGGGTTGAACCAAAGGATGGTATGTTTCTTCATGCAGTTAGAGCAGTGCTTTCAATGAATGATTCAACTTGGAAGAAGAAAATAAATGTTATGAAGAGTTTAGGATGGTCTGAGAAGGAGATTTTTTCAGCATTTAAGAGATATCCATTTTATTTAACTTGTTCAGAGGAGAAATTGAGGAATGTTGCAGATTTCTGTTTCAACACTGCAAAGTTGGATAGAGAAACTCTAATTACTTACCCTATGTTCTTCAACACTTCACTCGACAAGCGGCTCTATCCGAGGTACAAAGTTCTTGAGGTTTTGAAGGTAAAAAATCTTCTTAAGAACACAAAGATTGCTCGGGTTATTTTACTACGAGGGGAGAAAGAATTTATGGAGAAATACGTAGTTAAGCATTTGGATGAAATCCCAAATCTGATGGACATATACAGAGGCAATGTTGCAGCCGAAACCAAATCTGTTCTATAG

Protein sequence

MLVSDEKVTAAIFRCTWLLTYTSKGTMRSNIDVLVSEGVPSRNIVKLIELNPRTILRKVDLMIHAVETVKESGVEPKDGMFLHAVRAVLSMNDSTWKKKINVMKSLGWSEKEIFSAFKRYPFYLTCSEEKLRNVADFCFNTAKLDRETLITYPMFFNTSLDKRLYPRYKVLEVLKVKNLLKNTKIARVILLRGEKEFMEKYVVKHLDEIPNLMDIYRGNVAAETKSVL

Homology

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BLAST of Cucsat.G9609.T18 vs. ExPASy Swiss-Prot
Match: Q9FM80 (Transcription termination factor MTERF9, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=MTERF9 PE=2 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 2.1e-06
Identity = 41/180 (22.78%), Postives = 89/180 (49.44%), Query Frame = 0


Query: 3   VSDEKVTAAIFRCTWLLTYTSKGTMRSNIDVLVSE-GVPSRNIVKLIELNPRTILRKVDL 62
           + + K+   +     L +Y+ + ++R  I  L+ E G+   ++ K+++L+P+ +++++D+
Sbjct: 267 IPNSKIGQIVAATPSLFSYSVENSLRPTIRYLIEEVGIKETDVGKVVQLSPQILVQRLDI 326

Query: 63  MIHA--VETVKESGVEPKDGMFLHAVRAVLSMN---DSTWKKKINVMKSLGWSEKEIFSA 122
             +   +   KE G  P+D +     +    ++   D  +  +IN ++S+G    +I   
Sbjct: 327 TWNTRYMFLSKELGA-PRDSVVKMVKKHPQLLHYSIDDGFLPRINFLRSIGMCNSDILKV 386

Query: 123 FKRYPFYLTCS-EEKLRNVADFCFNTAKLDRETLITYPMFFNTSLDKRLYPRYKVLEVLK 176
                  L+ S E+ L+    +  N    +   L  YPM+ + SLD+R+ PR++ L  LK
Sbjct: 387 LTSLTQVLSLSLEDNLKPKYMYLVNELNNEVHILTKYPMYLSLSLDQRIRPRHRFLVELK 445

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BLAST of Cucsat.G9609.T18 vs. NCBI nr
Match: XP_031742250.1 (uncharacterized protein LOC116404132 [Cucumis sativus] >XP_031742251.1 uncharacterized protein LOC116404132 [Cucumis sativus])

HSP 1 Score: 377 bits (969), Expect = 1.03e-130
Identity = 195/228 (85.53%), Postives = 208/228 (91.23%), Query Frame = 0


Query: 1   MLVSDEKVTAAIFRCTWLLTYTSKGTMRSNIDVLVSEGVPSRNIVKLIELNPRTILRKVD 60
           MLVSDEKVTAAIFRCTWLLTYTSKGTMRSNIDVLVSEGVPSRNIVKLIELNPRTILRKVD
Sbjct: 1   MLVSDEKVTAAIFRCTWLLTYTSKGTMRSNIDVLVSEGVPSRNIVKLIELNPRTILRKVD 60

Query: 61  LMIHAVETVKESGVEPKDGMFLHAVRAVLSMNDSTWKKKINVMKSLGWSEKEIFSAFKRY 120
           LMIHAVETVKESGVEPKDGMFLHAVRAVLSMNDSTWKKKINVMKSLGWSE EIF+AFK++
Sbjct: 61  LMIHAVETVKESGVEPKDGMFLHAVRAVLSMNDSTWKKKINVMKSLGWSENEIFTAFKKF 120

Query: 121 PFYLTCSEEKLRNVADFCFNTAKLDRETLITYPMFFNTSLDKRLYPRYKVLEVLKVKNLL 180
           P Y TCSEEK+R+VADFC NTA LD  TLI+YP+ F  S++KRL PRYKVLEVLKVKNLL
Sbjct: 121 PPYFTCSEEKMRDVADFCSNTAMLDPGTLISYPVLFKYSVEKRLQPRYKVLEVLKVKNLL 180

Query: 181 KNTKIARVILLRGEKEFMEKYVVKHLDEIPNLMDIYRGNVAAETKSVL 228
           K  KIA   + +GE  F+EKYVVKHLDEIPNLMDIYRGN AAETKSV+
Sbjct: 181 KIKKIASAFV-KGEGYFVEKYVVKHLDEIPNLMDIYRGNAAAETKSVV 227

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BLAST of Cucsat.G9609.T18 vs. NCBI nr
Match: KAE8648644.1 (hypothetical protein Csa_008356 [Cucumis sativus])

HSP 1 Score: 377 bits (969), Expect = 9.61e-129
Identity = 195/228 (85.53%), Postives = 208/228 (91.23%), Query Frame = 0


Query: 1   MLVSDEKVTAAIFRCTWLLTYTSKGTMRSNIDVLVSEGVPSRNIVKLIELNPRTILRKVD 60
           MLVSDEKVTAAIFRCTWLLTYTSKGTMRSNIDVLVSEGVPSRNIVKLIELNPRTILRKVD
Sbjct: 131 MLVSDEKVTAAIFRCTWLLTYTSKGTMRSNIDVLVSEGVPSRNIVKLIELNPRTILRKVD 190

Query: 61  LMIHAVETVKESGVEPKDGMFLHAVRAVLSMNDSTWKKKINVMKSLGWSEKEIFSAFKRY 120
           LMIHAVETVKESGVEPKDGMFLHAVRAVLSMNDSTWKKKINVMKSLGWSE EIF+AFK++
Sbjct: 191 LMIHAVETVKESGVEPKDGMFLHAVRAVLSMNDSTWKKKINVMKSLGWSENEIFTAFKKF 250

Query: 121 PFYLTCSEEKLRNVADFCFNTAKLDRETLITYPMFFNTSLDKRLYPRYKVLEVLKVKNLL 180
           P Y TCSEEK+R+VADFC NTA LD  TLI+YP+ F  S++KRL PRYKVLEVLKVKNLL
Sbjct: 251 PPYFTCSEEKMRDVADFCSNTAMLDPGTLISYPVLFKYSVEKRLQPRYKVLEVLKVKNLL 310

Query: 181 KNTKIARVILLRGEKEFMEKYVVKHLDEIPNLMDIYRGNVAAETKSVL 228
           K  KIA   + +GE  F+EKYVVKHLDEIPNLMDIYRGN AAETKSV+
Sbjct: 311 KIKKIASAFV-KGEGYFVEKYVVKHLDEIPNLMDIYRGNAAAETKSVV 357

[Close]

BLAST of Cucsat.G9609.T18 vs. NCBI nr
Match: XP_031741662.1 (transcription termination factor MTERF9, chloroplastic [Cucumis sativus] >KAE8648646.1 hypothetical protein Csa_008275 [Cucumis sativus])

HSP 1 Score: 363 bits (931), Expect = 1.01e-122
Identity = 187/228 (82.02%), Postives = 202/228 (88.60%), Query Frame = 0


Query: 1   MLVSDEKVTAAIFRCTWLLTYTSKGTMRSNIDVLVSEGVPSRNIVKLIELNPRTILRKVD 60
           ML SDE+V AAI R   LL Y  KG  +S  D+L SEGVPSRNI K+I LNPRT ++K D
Sbjct: 147 MLESDEQVIAAISRFPSLLIYNLKGNFKSISDILASEGVPSRNIAKMIALNPRTSMQKAD 206

Query: 61  LMIHAVETVKESGVEPKDGMFLHAVRAVLSMNDSTWKKKINVMKSLGWSEKEIFSAFKRY 120
            MI AV+TVKESG+EPK  MF++A+   LSMN+STWKKKINV+KSLGWSE EIFSAFK+Y
Sbjct: 207 RMILAVKTVKESGIEPKAPMFIYALFVRLSMNESTWKKKINVLKSLGWSENEIFSAFKKY 266

Query: 121 PFYLTCSEEKLRNVADFCFNTAKLDRETLITYPMFFNTSLDKRLYPRYKVLEVLKVKNLL 180
           P+YLTCSEEKLRNVADFCFNTAKLDRETLITYPMFFNTSLDKRLYPRYKVLEVLKVKNLL
Sbjct: 267 PYYLTCSEEKLRNVADFCFNTAKLDRETLITYPMFFNTSLDKRLYPRYKVLEVLKVKNLL 326

Query: 181 KNTKIARVILLRGEKEFMEKYVVKHLDEIPNLMDIYRGNVAAETKSVL 228
           KNTKIARVILLRGEKEFMEKYVVKHLDEIPNLMDIYRGNVAAETKSVL
Sbjct: 327 KNTKIARVILLRGEKEFMEKYVVKHLDEIPNLMDIYRGNVAAETKSVL 374

[Close]

BLAST of Cucsat.G9609.T18 vs. NCBI nr
Match: XP_031741760.1 (transcription termination factor MTERF9, chloroplastic-like [Cucumis sativus])

HSP 1 Score: 342 bits (878), Expect = 2.20e-115
Identity = 175/228 (76.75%), Postives = 198/228 (86.84%), Query Frame = 0


Query: 1   MLVSDEKVTAAIFRCTWLLTYTSKGTMRSNIDVLVSEGVPSRNIVKLIELNPRTILRKVD 60
           ML +DE VTAAI R TWLLTY+SKGT+RSNID+LVSEGVPSRNI K+IELNPRTI++ VD
Sbjct: 99  MLETDENVTAAICRYTWLLTYSSKGTLRSNIDILVSEGVPSRNIAKMIELNPRTIVQNVD 158

Query: 61  LMIHAVETVKESGVEPKDGMFLHAVRAVLSMNDSTWKKKINVMKSLGWSEKEIFSAFKRY 120
            +I AV+TVKE GVEPKD  F+HAV  VLSM+DS WKKKINVMKSLGWSEKEI +AFKRY
Sbjct: 159 RIIDAVKTVKELGVEPKDFKFVHAVTTVLSMSDSAWKKKINVMKSLGWSEKEILTAFKRY 218

Query: 121 PFYLTCSEEKLRNVADFCFNTAKLDRETLITYPMFFNTSLDKRLYPRYKVLEVLKVKNLL 180
           P YLTCSEEK+R+VADFCFNTAKLD  TLI YP+ F  S+DKRL PRYKVLEVLKVKNLL
Sbjct: 219 PPYLTCSEEKMRDVADFCFNTAKLDPGTLIRYPVLFKYSVDKRLRPRYKVLEVLKVKNLL 278

Query: 181 KNTKIARVILLRGEKEFMEKYVVKHLDEIPNLMDIYRGNVAAETKSVL 228
           KN K  ++   RGE++F+E Y+VKHLDEIPNLMDIYRGNVA+ETKSVL
Sbjct: 279 KNEKSVQLFF-RGERDFVENYIVKHLDEIPNLMDIYRGNVASETKSVL 325

[Close]

BLAST of Cucsat.G9609.T18 vs. NCBI nr
Match: XP_031741759.1 (transcription termination factor MTERF5, chloroplastic-like [Cucumis sativus])

HSP 1 Score: 341 bits (875), Expect = 8.78e-115
Identity = 174/228 (76.32%), Postives = 199/228 (87.28%), Query Frame = 0


Query: 1   MLVSDEKVTAAIFRCTWLLTYTSKGTMRSNIDVLVSEGVPSRNIVKLIELNPRTILRKVD 60
           ML +DE VTAAI R TWLLTY+SKGT+RSNID+LVSEGVPSRNI K+IELNPRTI++ VD
Sbjct: 109 MLETDENVTAAICRYTWLLTYSSKGTLRSNIDILVSEGVPSRNIAKMIELNPRTIVQNVD 168

Query: 61  LMIHAVETVKESGVEPKDGMFLHAVRAVLSMNDSTWKKKINVMKSLGWSEKEIFSAFKRY 120
            +I AV+ VKE GVEPKD  F+HAV  VLSM+DS WKKKINVMKSLGWSE EIF+AFK++
Sbjct: 169 RIIDAVKRVKELGVEPKDFKFVHAVTTVLSMSDSNWKKKINVMKSLGWSENEIFTAFKKF 228

Query: 121 PFYLTCSEEKLRNVADFCFNTAKLDRETLITYPMFFNTSLDKRLYPRYKVLEVLKVKNLL 180
           P YLTCSE+KLRNVADFCFNTAKLD  TLI+YP+ F  S++KRL PRYKVLEVLKVKNLL
Sbjct: 229 PPYLTCSEDKLRNVADFCFNTAKLDPGTLISYPVLFKYSVEKRLRPRYKVLEVLKVKNLL 288

Query: 181 KNTKIARVILLRGEKEFMEKYVVKHLDEIPNLMDIYRGNVAAETKSVL 228
           KN K A++   RGE+EF+E Y+VKHLDEIPNLMDIYRGNVA+ETKSVL
Sbjct: 289 KNEKSAQLFF-RGEREFVENYIVKHLDEIPNLMDIYRGNVASETKSVL 335

[Close]

BLAST of Cucsat.G9609.T18 vs. ExPASy TrEMBL
Match: A0A1S3BH03 (uncharacterized protein LOC103489540 OS=Cucumis melo OX=3656 GN=LOC103489540 PE=3 SV=1)

HSP 1 Score: 330 bits (845), Expect = 4.11e-112
Identity = 172/228 (75.44%), Postives = 194/228 (85.09%), Query Frame = 0


Query: 1   MLVSDEKVTAAIFRCTWLLTYTSKGTMRSNIDVLVSEGVPSRNIVKLIELNPRTILRKVD 60
           ML SDEKVT AI R +W+L+  SKGTMRSN DVLVSEGVPS NI K+I LNPR+I+R V 
Sbjct: 1   MLESDEKVTVAICRASWILSANSKGTMRSNFDVLVSEGVPSTNIAKMIALNPRSIMRNVG 60

Query: 61  LMIHAVETVKESGVEPKDGMFLHAVRAVLSMNDSTWKKKINVMKSLGWSEKEIFSAFKRY 120
            MIHAV+TVKE GVEPKD  F++AV AV SMN S+WKKKINVMKSLGWSEKEIF+AFKRY
Sbjct: 61  RMIHAVKTVKELGVEPKDRAFVYAVSAVGSMNHSSWKKKINVMKSLGWSEKEIFTAFKRY 120

Query: 121 PFYLTCSEEKLRNVADFCFNTAKLDRETLITYPMFFNTSLDKRLYPRYKVLEVLKVKNLL 180
           P  LTCSEEK+R+VADFCFNTAKLD  TLI+YP+FFN S+DKRL PRYKVLEVLKVKNLL
Sbjct: 121 PLCLTCSEEKMRDVADFCFNTAKLDPGTLISYPVFFNLSVDKRLRPRYKVLEVLKVKNLL 180

Query: 181 KNTKIARV-ILLRGEKEFMEKYVVKHLDEIPNLMDIYRGNVAAETKSV 227
           KN KIA     ++GE+EF++  VVKHLDEIPNLMDIYRGN A+ETKSV
Sbjct: 181 KNKKIALTGWFMQGEREFVKNNVVKHLDEIPNLMDIYRGNGASETKSV 228

[Close]

BLAST of Cucsat.G9609.T18 vs. ExPASy TrEMBL
Match: A0A1S3BDZ4 (uncharacterized protein LOC103488851 OS=Cucumis melo OX=3656 GN=LOC103488851 PE=3 SV=1)

HSP 1 Score: 328 bits (840), Expect = 2.21e-111
Identity = 170/227 (74.89%), Postives = 194/227 (85.46%), Query Frame = 0


Query: 1   MLVSDEKVTAAIFRCTWLLTYTSKGTMRSNIDVLVSEGVPSRNIVKLIELNPRTILRKVD 60
           ML SDEKV AAI R +W+L+  SKGTMRSNIDVLVSEGVPS NI K+I LNPR+I+R VD
Sbjct: 1   MLESDEKVAAAICRASWILSANSKGTMRSNIDVLVSEGVPSTNIAKMIALNPRSIMRNVD 60

Query: 61  LMIHAVETVKESGVEPKDGMFLHAVRAVLSMNDSTWKKKINVMKSLGWSEKEIFSAFKRY 120
            +IHAV+TVKE GVEPKD  F++AV AV SM+DS+WKKKINVMKSLGWSEKEIF+AFK+ 
Sbjct: 61  RIIHAVKTVKELGVEPKDRTFVYAVSAVGSMSDSSWKKKINVMKSLGWSEKEIFTAFKKD 120

Query: 121 PFYLTCSEEKLRNVADFCFNTAKLDRETLITYPMFFNTSLDKRLYPRYKVLEVLKVKNLL 180
           P +LTCSEEK+R+VADFCFNTAKLD E++I YP FF  S+DKRL PRYKV EVLKVKNLL
Sbjct: 121 PTFLTCSEEKMRDVADFCFNTAKLDPESVIIYPKFFQCSVDKRLKPRYKVFEVLKVKNLL 180

Query: 181 KNTKIARVILLRGEKEFMEKYVVKHLDEIPNLMDIYRGNVAAETKSV 227
           KN  IAR  + RGE+EF+E  VVKHLDEIPNLMDIYRGN A+ETKSV
Sbjct: 181 KNKNIARWFI-RGEREFVENNVVKHLDEIPNLMDIYRGNDASETKSV 226

[Close]

BLAST of Cucsat.G9609.T18 vs. ExPASy TrEMBL
Match: A0A5D3CWN7 (Transcription termination factor MTERF5 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold35G002840 PE=3 SV=1)

HSP 1 Score: 330 bits (845), Expect = 5.69e-110
Identity = 172/228 (75.44%), Postives = 194/228 (85.09%), Query Frame = 0


Query: 1   MLVSDEKVTAAIFRCTWLLTYTSKGTMRSNIDVLVSEGVPSRNIVKLIELNPRTILRKVD 60
           ML SDEKVT AI R +W+L+  SKGTMRSN DVLVSEGVPS NI K+I LNPR+I+R V 
Sbjct: 147 MLESDEKVTVAICRASWILSANSKGTMRSNFDVLVSEGVPSTNIAKMIALNPRSIMRNVG 206

Query: 61  LMIHAVETVKESGVEPKDGMFLHAVRAVLSMNDSTWKKKINVMKSLGWSEKEIFSAFKRY 120
            MIHAV+TVKE GVEPKD  F++AV AV SMN S+WKKKINVMKSLGWSEKEIF+AFKRY
Sbjct: 207 RMIHAVKTVKELGVEPKDRAFVYAVSAVGSMNHSSWKKKINVMKSLGWSEKEIFTAFKRY 266

Query: 121 PFYLTCSEEKLRNVADFCFNTAKLDRETLITYPMFFNTSLDKRLYPRYKVLEVLKVKNLL 180
           P  LTCSEEK+R+VADFCFNTAKLD  TLI+YP+FFN S+DKRL PRYKVLEVLKVKNLL
Sbjct: 267 PLCLTCSEEKMRDVADFCFNTAKLDPGTLISYPVFFNLSVDKRLRPRYKVLEVLKVKNLL 326

Query: 181 KNTKIARV-ILLRGEKEFMEKYVVKHLDEIPNLMDIYRGNVAAETKSV 227
           KN KIA     ++GE+EF++  VVKHLDEIPNLMDIYRGN A+ETKSV
Sbjct: 327 KNKKIALTGWFMQGEREFVKNNVVKHLDEIPNLMDIYRGNGASETKSV 374

[Close]

BLAST of Cucsat.G9609.T18 vs. ExPASy TrEMBL
Match: A0A5A7SU45 (Transcription termination factor MTERF5 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold35G002650 PE=3 SV=1)

HSP 1 Score: 328 bits (840), Expect = 3.06e-109
Identity = 170/227 (74.89%), Postives = 194/227 (85.46%), Query Frame = 0


Query: 1   MLVSDEKVTAAIFRCTWLLTYTSKGTMRSNIDVLVSEGVPSRNIVKLIELNPRTILRKVD 60
           ML SDEKV AAI R +W+L+  SKGTMRSNIDVLVSEGVPS NI K+I LNPR+I+R VD
Sbjct: 147 MLESDEKVAAAICRASWILSANSKGTMRSNIDVLVSEGVPSTNIAKMIALNPRSIMRNVD 206

Query: 61  LMIHAVETVKESGVEPKDGMFLHAVRAVLSMNDSTWKKKINVMKSLGWSEKEIFSAFKRY 120
            +IHAV+TVKE GVEPKD  F++AV AV SM+DS+WKKKINVMKSLGWSEKEIF+AFK+ 
Sbjct: 207 RIIHAVKTVKELGVEPKDRTFVYAVSAVGSMSDSSWKKKINVMKSLGWSEKEIFTAFKKD 266

Query: 121 PFYLTCSEEKLRNVADFCFNTAKLDRETLITYPMFFNTSLDKRLYPRYKVLEVLKVKNLL 180
           P +LTCSEEK+R+VADFCFNTAKLD E++I YP FF  S+DKRL PRYKV EVLKVKNLL
Sbjct: 267 PTFLTCSEEKMRDVADFCFNTAKLDPESVIIYPKFFQCSVDKRLKPRYKVFEVLKVKNLL 326

Query: 181 KNTKIARVILLRGEKEFMEKYVVKHLDEIPNLMDIYRGNVAAETKSV 227
           KN  IAR  + RGE+EF+E  VVKHLDEIPNLMDIYRGN A+ETKSV
Sbjct: 327 KNKNIARWFI-RGEREFVENNVVKHLDEIPNLMDIYRGNDASETKSV 372

[Close]

BLAST of Cucsat.G9609.T18 vs. ExPASy TrEMBL
Match: A0A1S4DW22 (transcription termination factor MTERF5, chloroplastic-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC103488866 PE=3 SV=1)

HSP 1 Score: 323 bits (829), Expect = 6.70e-109
Identity = 164/228 (71.93%), Postives = 194/228 (85.09%), Query Frame = 0


Query: 1   MLVSDEKVTAAIFRCTWLLTYTSKGTMRSNIDVLVSEGVPSRNIVKLIELNPRTILRKVD 60
           ML SD+KVTAAI R +WLLT  S GT+RSNIDVLVSEGVPS NI ++I LNPR+++RKVD
Sbjct: 55  MLGSDKKVTAAICRTSWLLTSNSNGTVRSNIDVLVSEGVPSTNIAQIIALNPRSVMRKVD 114

Query: 61  LMIHAVETVKESGVEPKDGMFLHAVRAVLSMNDSTWKKKINVMKSLGWSEKEIFSAFKRY 120
            MI AV+TVKE GVEPKDGMF++AV   +SM+DSTWKKKINVMKSLGWSE EIF+AFKR+
Sbjct: 115 RMIRAVKTVKELGVEPKDGMFVYAVSVAVSMSDSTWKKKINVMKSLGWSENEIFTAFKRF 174

Query: 121 PFYLTCSEEKLRNVADFCFNTAKLDRETLITYPMFFNTSLDKRLYPRYKVLEVLKVKNLL 180
           P +LTCSEEK+R++ADFC NTAKLD  TLI+YP FFN S+ KRL PRYKVLEVLK+KNLL
Sbjct: 175 PRFLTCSEEKMRDIADFCLNTAKLDPGTLISYPQFFNYSVHKRLQPRYKVLEVLKMKNLL 234

Query: 181 KNTKIARVILLRGEKEFMEKYVVKHLDEIPNLMDIYRGNVAAETKSVL 228
           K TK   ++ + GE+ F+EKY+VKH D+IPNL+DIY GNV AETKSVL
Sbjct: 235 K-TKNIGLLFVEGERRFVEKYIVKHFDKIPNLIDIYLGNVKAETKSVL 281

The following BLAST results are available for this feature:

BLAST of Cucsat.G9609.T18 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FM80	2.1e-06	22.78	Transcription termination factor MTERF9, chloroplastic OS=Arabidopsis thaliana O...	[more]

BLAST of Cucsat.G9609.T18 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_031742250.1	1.03e-130	85.53	uncharacterized protein LOC116404132 [Cucumis sativus] >XP_031742251.1 uncharact...	[more]
KAE8648644.1	9.61e-129	85.53	hypothetical protein Csa_008356 [Cucumis sativus]	[more]
XP_031741662.1	1.01e-122	82.02	transcription termination factor MTERF9, chloroplastic [Cucumis sativus] >KAE864...	[more]
XP_031741760.1	2.20e-115	76.75	transcription termination factor MTERF9, chloroplastic-like [Cucumis sativus]	[more]
XP_031741759.1	8.78e-115	76.32	transcription termination factor MTERF5, chloroplastic-like [Cucumis sativus]	[more]

BLAST of Cucsat.G9609.T18 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3BH03	4.11e-112	75.44	uncharacterized protein LOC103489540 OS=Cucumis melo OX=3656 GN=LOC103489540 PE=...	[more]
A0A1S3BDZ4	2.21e-111	74.89	uncharacterized protein LOC103488851 OS=Cucumis melo OX=3656 GN=LOC103488851 PE=...	[more]
A0A5D3CWN7	5.69e-110	75.44	Transcription termination factor MTERF5 OS=Cucumis melo var. makuwa OX=1194695 G...	[more]
A0A5A7SU45	3.06e-109	74.89	Transcription termination factor MTERF5 OS=Cucumis melo var. makuwa OX=1194695 G...	[more]
A0A1S4DW22	6.70e-109	71.93	transcription termination factor MTERF5, chloroplastic-like isoform X2 OS=Cucumi...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (B10) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003690	Transcription termination factor, mitochondrial/chloroplastic	SMART	SM00733	mt_12	coord: 114..145 e-value: 120.0 score: 11.0 coord: 146..177 e-value: 0.94 score: 18.5 coord: 9..40 e-value: 160.0 score: 10.2 coord: 45..75 e-value: 1500.0 score: 2.4 coord: 79..109 e-value: 0.85 score: 18.7
IPR003690	Transcription termination factor, mitochondrial/chloroplastic	PFAM	PF02536	mTERF	coord: 23..188 e-value: 2.2E-20 score: 72.8
IPR003690	Transcription termination factor, mitochondrial/chloroplastic	PANTHER	PTHR13068	CGI-12 PROTEIN-RELATED	coord: 2..220
IPR038538	MTERF superfamily, mitochondrial/chloroplastic	GENE3D	1.25.70.10	Transcription termination factor 3, mitochondrial	coord: 1..211 e-value: 4.5E-38 score: 132.9
None	No IPR available	PANTHER	PTHR13068:SF31	TRANSCRIPTION TERMINATION FACTOR MTERF15, MITOCHONDRIAL-LIKE	coord: 2..220

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cucsat.G9609	Cucsat.G9609	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cucsat.G9609.T18.E1	Cucsat.G9609.T18.E1	exon
Cucsat.G9609.T18.E2	Cucsat.G9609.T18.E2	exon
Cucsat.G9609.T18.E3	Cucsat.G9609.T18.E3	exon
Cucsat.G9609.T18.E4	Cucsat.G9609.T18.E4	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cucsat.G9609.T18.C3	Cucsat.G9609.T18.C3	CDS
Cucsat.G9609.T18.C2	Cucsat.G9609.T18.C2	CDS
Cucsat.G9609.T18.C1	Cucsat.G9609.T18.C1	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cucsat.G9609.T18	Cucsat.G9609.T18-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
biological_process	GO:0006353	DNA-templated transcription, termination
molecular_function	GO:0003690	double-stranded DNA binding