Cucsat.G9031.T43 (mRNA) Cucumber (B10) v3

Overview
NameCucsat.G9031.T43
TypemRNA
OrganismCucumis sativus L. var. sativus cv B10 (Cucumber (B10) v3)
DescriptionCytochrome b5 heme-binding domain-containing protein
Locationctg1635: 1238131 .. 1242676 (+)
RNA-Seq ExpressionCucsat.G9031.T43
SyntenyCucsat.G9031.T43
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
GCCGCGCGAAGAAGACACTCCCGAGCTCTGACAATCGGTTCATAGCAATGGCCGGTGATCTCTCTCAGCAAAAAGCCAGTGAAGATGCGCATGCGCATGAGAAATCGAGCTCGGTGAAGGGCAAGGAAATGAGGGGAAAGATCATGGGATGGGTTTTAGCTTCTATAGTTGCTATCTTTGCGCTCTTCATCGGGTTTTCCTTCAAATCCCGATACCAGATCTCCTCCATCTCTCCCTCCTCTCAACAGGTACGAGCTTTTTCTTGTTGAAGTTTGATGTAGATCACGGGCTTGTTAATTGTACTTGTATTTGGTTTCGAAAGACAACTAGTATTTCTATCTTTTGTTTGAAGGCATGTCTCTCTTTTTCTGTTATTAAGAGTATGTTGGTACTTTATGAATTTTCGTGTATATTTATCAGAAAGCGTTGTTTGGGATTTGGTAGAGCTCTATTTATGATTGTTAAACTGTTTAACATCTTTTGTTCGTTCTACATGTGGGCGAGCTTTTTTGGGTGTGCTACTTAATGCTATGGAAAATAGGTTATTAATTTGATGGCGAGAAGTTTACCCACAGTTTGCTTACCATTTCAAGTTGAGGGAAAGATGGCCTTTGGTTAAATGCTGTGAGATGGGGTTCCTGGCGTTGTTTTTTGCTGCTATAGCATAAATGGTTGATTGTCATTATTTTATTGGGACCCGGTGATTAGAATTTGATAAATAGGAGAAATTTAATTTAATTTAAAATTTTCACTCAAAGTTTCGGGTTCAAAACAGTTGTGCTTGTGGCATGAAAAAGGCTCTTTATAGCAGTCAATTATAGCTAGGCAAGAGAGGGAGGTTTATTGTTAATGCAAATGCTCTAGTCGAACATAATCTGGATTTTTAAAGTATTTGATGAAGGTTTCCCTATCTTATGAAGAGGGCATTAGTTAGAAATTGACCTTTTGAAGGGTCCGTGGATCAACTTTTGTTTGGTTACTTGCTCAAACGTGTAGCGTGTAGCAGTTTGTCATCAAATAAATTGTTGAGCGCTCAGAACATCTCTGAAAATCAGAAAGAGGAAAGAAGAAATTGGGTCTCATTCCTTAATTCCCAATATACCCTCTTCCTAAGCCTTCCATTGGAGAATATGAAGAATTTGATGTATGGGATACTCCTTTGCATCCAGCTTGCCCATTTAGGCTCAGAGCTTCTCGTAACAGCGAACAAGAATACAGGATCTTCTATGCATATGTTGAACAACCACTTTTCTCCTTGCTATTCTTTATTTCATCAATGGTTTCTGTTGTTGCTTTTGAAGGTGGTTTGTTCACATGTAAGATTAGCGAGGCCCATTCATAGATGAAATAAAGAAATCTGTAGGTTTCTTTGCACATTTTGTGCCATGCAAAGCGTAGATGAAATAAAGACATGACTAGATTTCCTTTAAATTTTGTAATTTAAATCTGTTGAACGTGTTGATGGAGAGATGAAGGCTTCAATTTCTAAACAATTTAAGTTGGTAGAGTCTTATACTTCTATTTTAAGTTCTTGTTTGGTTTTGTAGAAACTCTTCAAAGTTGATGAGCTAGCTTTGTATAATGGAACAGACAAGGGATTGCCTATCCTTCTTGGAATTCTTGGGTACTCTCCACCTTCCTTCCAACTCACCCTCCAAAACTCTGTCTATGTTATTTTCCCTTCCCCCCTCTCTTCTTCTTCTAGTGTCTGATACATGTCCAACAAGTCTCATACAAAGACAATAATCAAACCAAAATGTTCATGTTTCTTAATTTATGATTTATGAGACTGTAGGAAACAGAGAAAATAAATTCTGTTAATTTATAGCGTTGGCTGTTGAACCTCTAAGCCTCAATTCTTTTTTGTGGTGGTTCTTTTAAAGTTATATCATTAGTCTGAACATAAGAAATACCAAAGGTCTTGGGTTGAAACATCCTTAACCTGACAGCGAATAGGAAAGCATGCCAATTGTGACATGGTTAAGCAAAAGGGTTATTTCATGAGAATCAATCCCTTGCTATTTAACCTCTAATAATTGGCTTTTTCAGATCTGTATTTGATGTCACAAAAGGAAAATCTCACTATGGTGTGGGAGGAGGCTATAATCATTTTGCTGGAAGGTTTGTGATCTCTTCTTTTCTCATTGATCTCCTGCATCTTCCGTTTTGTCTTATACTGCATGACAAAGCTTTTGAATCATCTGTTCTGTCAATGGTTCAGTTGTCATGTTTTTTTTTCTTTGTGCATTTGTGTTTGTCTTTTGTGGCCATTAATTTCAATATTAATATCTTACTGTGCCATTTTATCTCTGCTCTACTTGCCACTCATTTTCCTTCTGCTATATTTTCCACCAAGGACAGTATGGAAGACTTTTATAAAGCATAAATTTCCAATGTAAATTTTACTAGTTTCTTACTGATCCAAATATGTTTGATTTCTTTTAACAAGACCTTGATAATTAATTGCCACTTTGTTTTAGTCTTCCAATGTACATATGGTAATGCATTGATATTTCTTTTCATTGTGGTTGTTTCTAAGAACAGAGACGCTTCTCGTGCATTTGTATCAGGAAACTTCGCAGGTATTTATGGTTTCTTTTCCTTAAGGATAAATGTTTTGTCAATTCCTAGTAATAAACTTACAAATTTGTATACTACTAACGTAATATAACAGACCATCTGAGTGGCATAGAGATATGGTGATACCTTTATTCTTTTTGGGATTTCAACAAGAAATATGAACTAAATCACTTGTTGTCTATGGGGCAAGGGTGAGGAGAGGGAGAGAGTGGTTGGGAATAAAAACTAAGAAAAAATTATCCATAGAAGAATAGTGTTTCAAATGTGTCATTATCTAAACACCATTTAAGTGTCATTTGAACTCTATCACTTGTTATTGTCATAGGGGAAGGACTCACTGATTCTTTGCGGGGTTTGTCAAATGCTGAGGTACTATAATTGTTTATATAAATTTTCAATAAGGGCAAGGAATTGCCCTTAAATATGTGGTACTGTTTCTTATTGTTTGTGCTCTCATTCTTTAGCTTTGTAGAACTTCTGCCCCATCCAAACCCATCATTCCACTCTTTGGTATGATGCTACAGTTTTCCATTGAGTTTACAATGAAGCATTTCTTACCATAGAGAATACTTGATCATTTTTTCTTATTGCATTAGTGTGTCCGGCGACAAATACCTCAGTGTATATTATTCATATCCTTGCTTTATACATCTGACTGTTGCACTAACTAATCTTGTAGATCAAGAGTGTTGTTGAATGGCGGAGTTTTTACCAAAAAACTTACACGTAAGCTGGCTGTTGTAGCGTCTATTATTTTATGTGACATGGGATGACAATTATGCATATATTAAAAGACGACTGATTTGGGAATAATATATGTTATTATGGTAATAAATTGAGAATAATGCTCTTGGCCTTCATTACAGACTTGTAGGTAAGTTGGTGGGTCTTTACTATGATGATCAAGGAAACCCCACTAAGCATTTAAAGGGAGCTGAGGCTAAGGCTGCCAGAGGTGCACAGCTTTTGAAGAAACAAAAAAAAGAGGAAGATAAACTGCCGAGTTGTAATTCGAGATGGAGTCAGGGAGAAGGTGGTGAGGTATATATTCCTCAATCTAGTCTTGGGATTTTCCTATCAGCTTCTCTATGTTTACTTCTTATAACATTATCTAGAATTTATGCAGTCTACCTAAGAGATATATTTGATGATAAGTCTGAGAAATGAATATAAAGCATTGTGTTCTCTCATTTCTCTCAGCGAAAGCTTGTTTTTTAGATTGTGACAATTTGACTTTCTTTTTAACACACCCTTAGGTTTGGTGTGATAATGGCTTCCCAAGGTTGGTACAGAGGCCTTTAGAAATTGCATTGACCGGGAAAATGAGCAAACGGTGTGCTTGCTTTAGGGAAGATCAACTGGGTGAACCAGGATTAGAAGTTTATGATGGTTGTGACTACCAAGCCAAGACTTGTCGTGTTTAAAGAGCCATTAAAACGACCTTTAGCTTGTCAGTTGTCAGTCAACATATAACCTCTCACATGCATTGGAAGGAAGTTTATTTTTAGTTATCATCCTGATACTAAAGAGGCAATGAAACCTGATGAAGATTGACTGAAACGGCCAATAGATTTGGCAATACGACATGCCAAATCTTTTGTTTTTTTTTCTTCTCCTGTTGGAAAGATGTGGGGGCCAGGCATTGACCGTGTACACTGTACAAGTATGTGATATATTTTTGTAGCACAACGCTGTTCATTGATCATCTTCATTTTCAGTCCCCTGTCTGGCTGCCTGCTGTCTATATCTTCGTTTGCTTTTTCAGAGCCAATGATATGAACTTGAAATATACTGATGTATTTCGATGTTAGTTTTATTTATTGCCCTCTTTTATATTCACAGCTTGCAAGACATGATTAAACACACCTTGTCTCTCCTTGTTGAATTCTGATGTTGCTACACTTCTAACTACTGGGTACAATCGCAGCATTGACACAAGGTTGATTTGTCTGCTTTTTGACGAAAC

Coding sequence (CDS)

CGCGCGAAGAAGACACTCCCGAGCTCTGACAATCGGTTCATAGCAATGGCCGGTGATCTCTCTCAGCAAAAAGCCAGTGAAGATGCGCATGCGCATGAGAAATCGAGCTCGGTGAAGGGCAAGGAAATGAGGGGAAAGATCATGGGATGGGTTTTAGCTTCTATAGTTGCTATCTTTGCGCTCTTCATCGGGTTTTCCTTCAAATCCCGATACCAGATCTCCTCCATCTCTCCCTCCTCTCAACAGAGACGCTTCTCGTGCATTTGTATCAGGAAACTTCGCAGGGGAAGGACTCACTGA

Protein sequence

RAKKTLPSSDNRFIAMAGDLSQQKASEDAHAHEKSSSVKGKEMRGKIMGWVLASIVAIFALFIGFSFKSRYQISSISPSSQQRRFSCICIRKLRRGRTH
Homology
[Close]
BLAST of Cucsat.G9031.T43 vs. NCBI nr
Match: XP_004149524.1 (membrane-associated progesterone-binding protein 4 isoform X1 [Cucumis sativus] >KGN54965.1 hypothetical protein Csa_012214 [Cucumis sativus])

HSP 1 Score: 131 bits (329), Expect = 3.40e-35
Identity = 68/70 (97.14%), Postives = 69/70 (98.57%), Query Frame = 0 

Query: 16 MAGDLSQQKASEDAHAHEKSSSVKGKEMRGKIMGWVLASIVAIFALFIGFSFKSRYQISS 75
          MAGDLSQQKASEDAHAHEKSSSVKGKEMRGKIMGWVLASIVAIFALFIGFSFKSRYQISS
Sbjct: 1  MAGDLSQQKASEDAHAHEKSSSVKGKEMRGKIMGWVLASIVAIFALFIGFSFKSRYQISS 60

Query: 76 ISPSSQQRRF 85
          ISPSSQQ+ F
Sbjct: 61 ISPSSQQKLF 70

[Close]
BLAST of Cucsat.G9031.T43 vs. NCBI nr
Match: KAA0063359.1 (membrane-associated progesterone-binding protein 4 [Cucumis melo var. makuwa] >TYK28061.1 membrane-associated progesterone-binding protein 4 [Cucumis melo var. makuwa])

HSP 1 Score: 112 bits (280), Expect = 2.91e-27
Identity = 59/72 (81.94%), Postives = 63/72 (87.50%), Query Frame = 0 

Query: 14  IAMAGDLSQQKASEDAHAHEKSSSVKGKEMRGKIMGWVLASIVAIFALFIGFSFKSRYQI 73
           I MA DLSQQK SE+AHAH  SSSVKGKEM GKI GWVLASIVAIFALFIG SFKSRY+I
Sbjct: 76  ITMASDLSQQKPSEEAHAHGSSSSVKGKEMGGKIRGWVLASIVAIFALFIGVSFKSRYKI 135

Query: 74  SSISPSSQQRRF 85
           SSISPS+QQ+ F
Sbjct: 136 SSISPSAQQKLF 147

[Close]
BLAST of Cucsat.G9031.T43 vs. NCBI nr
Match: XP_008464659.1 (PREDICTED: membrane-associated progesterone-binding protein 4 [Cucumis melo])

HSP 1 Score: 110 bits (275), Expect = 3.92e-27
Identity = 58/70 (82.86%), Postives = 62/70 (88.57%), Query Frame = 0 

Query: 16 MAGDLSQQKASEDAHAHEKSSSVKGKEMRGKIMGWVLASIVAIFALFIGFSFKSRYQISS 75
          MA DLSQQK SE+AHAH  SSSVKGKEM GKI GWVLASIVAIFALFIG SFKSRY+ISS
Sbjct: 1  MASDLSQQKPSEEAHAHGSSSSVKGKEMGGKIRGWVLASIVAIFALFIGVSFKSRYKISS 60

Query: 76 ISPSSQQRRF 85
          ISPS+QQ+ F
Sbjct: 61 ISPSAQQKLF 70

[Close]
BLAST of Cucsat.G9031.T43 vs. NCBI nr
Match: XP_038899300.1 (membrane-associated progesterone-binding protein 4 [Benincasa hispida])

HSP 1 Score: 93.6 bits (231), Expect = 1.26e-20
Identity = 51/70 (72.86%), Postives = 53/70 (75.71%), Query Frame = 0 

Query: 16 MAGDLSQQKASEDAHAHEKSSSVKGKEMRGKIMGWVLASIVAIFALFIGFSFKSRYQISS 75
          M  DLSQQK SEDAH     SSVKGKEM  KIMGWVLA +VAI ALFIGFSFKSRY I S
Sbjct: 1  MDSDLSQQKPSEDAHEERSLSSVKGKEMGDKIMGWVLALMVAILALFIGFSFKSRYPIFS 60

Query: 76 ISPSSQQRRF 85
           SPS QQ+ F
Sbjct: 61 SSPSHQQKLF 70

[Close]
BLAST of Cucsat.G9031.T43 vs. NCBI nr
Match: XP_022981227.1 (membrane-associated progesterone-binding protein 4 [Cucurbita maxima])

HSP 1 Score: 81.3 bits (199), Expect = 6.16e-16
Identity = 45/72 (62.50%), Postives = 51/72 (70.83%), Query Frame = 0 

Query: 16 MAGDLSQQKASEDAHAHEK--SSSVKGKEMRGKIMGWVLASIVAIFALFIGFSFKSRYQI 75
          MA D S Q+  EDAH  E+  SSSVKGK M GK MGWVLA IVA+ ALF+G SFKSRY I
Sbjct: 1  MASDQSPQRPGEDAHEDEQKGSSSVKGKAMAGKTMGWVLALIVAVVALFVGLSFKSRYPI 60

Query: 76 SSISPSSQQRRF 85
          +   PS QQ+ F
Sbjct: 61 APSFPSPQQKLF 72

[Close]
BLAST of Cucsat.G9031.T43 vs. ExPASy TrEMBL
Match: A0A0A0KZ74 (Cytochrome b5 heme-binding domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G617330 PE=4 SV=1)

HSP 1 Score: 131 bits (329), Expect = 1.64e-35
Identity = 68/70 (97.14%), Postives = 69/70 (98.57%), Query Frame = 0 

Query: 16 MAGDLSQQKASEDAHAHEKSSSVKGKEMRGKIMGWVLASIVAIFALFIGFSFKSRYQISS 75
          MAGDLSQQKASEDAHAHEKSSSVKGKEMRGKIMGWVLASIVAIFALFIGFSFKSRYQISS
Sbjct: 1  MAGDLSQQKASEDAHAHEKSSSVKGKEMRGKIMGWVLASIVAIFALFIGFSFKSRYQISS 60

Query: 76 ISPSSQQRRF 85
          ISPSSQQ+ F
Sbjct: 61 ISPSSQQKLF 70

[Close]
BLAST of Cucsat.G9031.T43 vs. ExPASy TrEMBL
Match: A0A5A7VCP1 (Membrane-associated progesterone-binding protein 4 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold384G003220 PE=4 SV=1)

HSP 1 Score: 112 bits (280), Expect = 1.41e-27
Identity = 59/72 (81.94%), Postives = 63/72 (87.50%), Query Frame = 0 

Query: 14  IAMAGDLSQQKASEDAHAHEKSSSVKGKEMRGKIMGWVLASIVAIFALFIGFSFKSRYQI 73
           I MA DLSQQK SE+AHAH  SSSVKGKEM GKI GWVLASIVAIFALFIG SFKSRY+I
Sbjct: 76  ITMASDLSQQKPSEEAHAHGSSSSVKGKEMGGKIRGWVLASIVAIFALFIGVSFKSRYKI 135

Query: 74  SSISPSSQQRRF 85
           SSISPS+QQ+ F
Sbjct: 136 SSISPSAQQKLF 147

[Close]
BLAST of Cucsat.G9031.T43 vs. ExPASy TrEMBL
Match: A0A1S3CMH5 (membrane-associated progesterone-binding protein 4 OS=Cucumis melo OX=3656 GN=LOC103502493 PE=4 SV=1)

HSP 1 Score: 110 bits (275), Expect = 1.90e-27
Identity = 58/70 (82.86%), Postives = 62/70 (88.57%), Query Frame = 0 

Query: 16 MAGDLSQQKASEDAHAHEKSSSVKGKEMRGKIMGWVLASIVAIFALFIGFSFKSRYQISS 75
          MA DLSQQK SE+AHAH  SSSVKGKEM GKI GWVLASIVAIFALFIG SFKSRY+ISS
Sbjct: 1  MASDLSQQKPSEEAHAHGSSSSVKGKEMGGKIRGWVLASIVAIFALFIGVSFKSRYKISS 60

Query: 76 ISPSSQQRRF 85
          ISPS+QQ+ F
Sbjct: 61 ISPSAQQKLF 70

[Close]
BLAST of Cucsat.G9031.T43 vs. ExPASy TrEMBL
Match: A0A6J1ITE8 (membrane-associated progesterone-binding protein 4 OS=Cucurbita maxima OX=3661 GN=LOC111480426 PE=4 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 2.98e-16
Identity = 45/72 (62.50%), Postives = 51/72 (70.83%), Query Frame = 0 

Query: 16 MAGDLSQQKASEDAHAHEK--SSSVKGKEMRGKIMGWVLASIVAIFALFIGFSFKSRYQI 75
          MA D S Q+  EDAH  E+  SSSVKGK M GK MGWVLA IVA+ ALF+G SFKSRY I
Sbjct: 1  MASDQSPQRPGEDAHEDEQKGSSSVKGKAMAGKTMGWVLALIVAVVALFVGLSFKSRYPI 60

Query: 76 SSISPSSQQRRF 85
          +   PS QQ+ F
Sbjct: 61 APSFPSPQQKLF 72

[Close]
BLAST of Cucsat.G9031.T43 vs. ExPASy TrEMBL
Match: A0A6J1FIN0 (membrane-associated progesterone-binding protein 4 OS=Cucurbita moschata OX=3662 GN=LOC111445811 PE=4 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 6.13e-14
Identity = 42/72 (58.33%), Postives = 49/72 (68.06%), Query Frame = 0 

Query: 16 MAGDLSQQKASEDAHAHEK--SSSVKGKEMRGKIMGWVLASIVAIFALFIGFSFKSRYQI 75
          MA D S  +  EDAH  E+  SSSVKGK M GK +GWVLA IVA+ ALF+G SFKSRY I
Sbjct: 1  MASDQSPPRPGEDAHEDEQKGSSSVKGKAMAGKTLGWVLALIVAVVALFVGLSFKSRYPI 60

Query: 76 SSISPSSQQRRF 85
          +   PS Q + F
Sbjct: 61 APSLPSPQLKLF 72

The following BLAST results are available for this feature:
BLAST of Cucsat.G9031.T43 vs.
Match NameE-valueIdentityDescription
BLAST of Cucsat.G9031.T43 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_004149524.13.40e-3597.14membrane-associated progesterone-binding protein 4 isoform X1 [Cucumis sativus] ... [more]
KAA0063359.12.91e-2781.94membrane-associated progesterone-binding protein 4 [Cucumis melo var. makuwa] >T... [more]
XP_008464659.13.92e-2782.86PREDICTED: membrane-associated progesterone-binding protein 4 [Cucumis melo][more]
XP_038899300.11.26e-2072.86membrane-associated progesterone-binding protein 4 [Benincasa hispida][more]
XP_022981227.16.16e-1662.50membrane-associated progesterone-binding protein 4 [Cucurbita maxima][more]
BLAST of Cucsat.G9031.T43 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KZ741.64e-3597.14Cytochrome b5 heme-binding domain-containing protein OS=Cucumis sativus OX=3659 ... [more]
A0A5A7VCP11.41e-2781.94Membrane-associated progesterone-binding protein 4 OS=Cucumis melo var. makuwa O... [more]
A0A1S3CMH51.90e-2782.86membrane-associated progesterone-binding protein 4 OS=Cucumis melo OX=3656 GN=LO... [more]
A0A6J1ITE82.98e-1662.50membrane-associated progesterone-binding protein 4 OS=Cucurbita maxima OX=3661 G... [more]
A0A6J1FIN06.13e-1458.33membrane-associated progesterone-binding protein 4 OS=Cucurbita moschata OX=3662... [more]
InterPro
Analysis Name: InterPro Annotations of Cucumber (B10) v3
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 25..39
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 20..39

Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Cucsat.G9031Cucsat.G9031gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Cucsat.G9031.T43.E1Cucsat.G9031.T43.E1exon
Cucsat.G9031.T43.E2Cucsat.G9031.T43.E2exon
Cucsat.G9031.T43.E3Cucsat.G9031.T43.E3exon
Cucsat.G9031.T43.E4Cucsat.G9031.T43.E4exon
Cucsat.G9031.T43.E5Cucsat.G9031.T43.E5exon
Cucsat.G9031.T43.E6Cucsat.G9031.T43.E6exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Cucsat.G9031.T43.C1Cucsat.G9031.T43.C1CDS
Cucsat.G9031.T43.C2Cucsat.G9031.T43.C2CDS
Cucsat.G9031.T43.C3Cucsat.G9031.T43.C3CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Cucsat.G9031.T43Cucsat.G9031.T43-proteinpolypeptide


GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0012505 endomembrane system
cellular_component GO:0016021 integral component of membrane