Cucsat.G7801.T2 (mRNA) Cucumber (B10) v3

Overview


Name	Cucsat.G7801.T2
Type	mRNA
Organism	Cucumis sativus L. var. sativus cv B10 (Cucumber (B10) v3)
Description	F-box protein SKIP24 isoform X2
Location	ctg1556: 1343713 .. 1348142 (+)
RNA-Seq Expression	Cucsat.G7801.T2
Synteny	Cucsat.G7801.T2

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

AAGAAAAGAAAAAAGGAGGATAGTTATAGTATTGTGTTGGATGATGTTTGGAATTGGATTCTAATGCGTAGGGCTCTTTCACATTCTTCATTTCCAACTTTGCAAATCCCAAAATGTCTGAATTGCCGGATGAGCTATGGAACCAAATTCTCCAAATTGGTGTCAAGACCTATGCTTTGACTTACAAAGATCTTTGTTGCGTCTCCATCTCTTCTCCTCGACTTCGCCGCCTCTCCGACCATGACTCTCTCTGGTCTCATCTTCTCTTCTCCGATTACCCTTCATCCTCTTCTTCTTTTCCATCTTCCGCTTCCTCCTCAAAGTCCCTTTACAAAATCAGGTACAAGAAAGGATTCATGAACCTGAACCATATCTCTTAATTTCTCTCTTCCAATCTCTCTCAATTCATTATTCTTTTCTTTTGTTCATCTTCTGTTTCGGTTAGGTTGGAGAGAGATAGATATAGGAAGAAAGCGGCGCATACGAGAGCTGTTCTTAGAAAGGAAAGTCAAATAGCTGAGCATTATAGGAGGGTTAGTCAATTAGAGGAACGGTTGATCGAGGAGACCGGCAAATGGACAACGACCTTCACTGAATTCTCTAATCTACGCACAGTCAGGTAGGGTTCGGCAATTGATTCAAAATCCTTCAGTAATATTTTCTGTTTCTTTTCTCGCTTGGTGTTTTAGTGATATGTCATGTGTGCTTGTGCAACTTGGTTGCTTGCAATCTGTAAAGTTTTTTTATTGGAATTGTGTTTTCGTTGAGTTTTTAAAAGGGGGAGACTACAATAGCTGATTATTGTCATTGTATGTAAATTCAATAGAATCCTCTTACTTAAATCTTGAGTTCAACAACATCTGGGGTCGAGGCGCATGAATCTCTAACCTTTTGGATCGAGGGATATGCCTAAGCCAGTTTGAACTATGCTTAGGTTGGCAAGATCATTTTACTAGGTCGGGTGGTAATTCAGTTATTTGTTGATAACAAAGCCCAATGGATTCATTTGGAACCTTTCTACCTCTTCACGTGAATGCTAATATGTTGATTTCGGTTTGAAGTCAGAATTTTTAGATATGATAATTGTGTTTTATCGTTTCAGGGAAGCAACGGTAGCTTTGAATGTCTGGCAGCCTGAGGTCATTAGGGCAAGGCAGAAGCAAATTGTTGAACAATGCAGTGTATCTGTTGATTCTCGTTTGCGGACTCTTGATATGGAGCTCAAGCTTTGTAAGCAACAAATTGCTATTTTTCAAAAAGCACTTGTAAGTTTTGAATGTGGAAACATTATTTTTCTATCTGTTAAGAACTATAATTTTAATTTCTTATACTGCTTGCCACAGAAAGATGAAAAAAAGAGATTGGAATTAGCCAAAGAAGAGTTAACTTCATTGAAGTATCACCCTCTTAAGGATCATAAATCTATGAATAGCAGTAATAATGACACTCACATCAAGAGGAGGTCCAAGGATGCAATAAATGTAAGGTTCTTGCTTGTTGATTATGCTTCAATTTTTTTTTATTGTGAATTTTGATAATTTCTTCGTGTTGCTGATGGTTTGGTTGCTATGAAATCTAACTTTCCCGTGAATTAATGAATTCTAATGTGTGCATGTGCACTGTGCTCTATTAGCATTTTTCTTCTTCAAACCATCAATATTGTTTTCTCATGATGTTACCACTTCTCCCAGTTTTACTAAATAAACTCATTAGGATACTACATATTTCTTATGAAGGTATTTTCCTAGTCTGGCCATGGATTGATGCTCGCTGTTCGTTGGTAGATTATCTGATGTCTTGAACTTAATGTCTTTTTTTAACTTTGACCTCCATAAATAACATTCACATAGAGGGTGGGGGTGGGTTGAAGGGAGGGGAGGTTTTCTTATTGTGAATGATTTGTAATTAGGTTGGAATCTTGGATTGATCTATATTTTATATTATATACTTGATTGATTAAGTTGTAGACACATATATACTTTACCTTTTTTTCCCACAAATAAATTGGAAGAGAAAATTAGCTTACTTTTTTATTACTTCACTGTGGAAATTGTGGCTTACCTCTTTTTTCATTAGATACATAATAATAACCAAATGTTGGCACATCAACTGGCTTGTTTTCCTGTGGTTATTTTATTTTCTGGTTAAAATTTCTTCAACCTTCATGACCACAGTATTGTTTATTCCTCAACTTTCACCAGCCCTACTTAGATAATATATTCTCCTTTCTTGCCTATATTGGTACAAATGGTACCCACCCCTTATATGTACTGAATATGTTGCATGTTTGCTTAAAATCCAAGTGAGAACTCAAACTGATATGATAAATATACTGATTACCAAATTTTGTAGAGCAAGGTAAAACAGCTACGCAGTACATGATTGGGGGAGCATTGCCTGTTGAAGAATGAGCCTGTCCTCAACATATAGGCAGTGGAACTAATAAAAACAGTTATGAATTCCGGTTGAGATGAACGTAACCACCAAAGTGTTCTGCACTAGGTGCAAAGTAATGATAAGATCGAACTGTTATATCAAACATCATATGGAGTTTTACATTTTATTCAAATGGGGAATTTTATAAATCAGTTGGAAGATCATCAATAAGCGCTTCTTTGACCCAAGAAAATATATGTCAACTCCCAATTTGGCCTACAGATAAAGAAACTCATGGCAAATTAAATCCAAGTCAGGACAACAACACTAATTAACTGTTGCAGTTCCCACGTTCATCAAGGTACTCCCCTTCACTCTTCATTTCTCTCCTTTCCCTCTCTTTGGCAGATTATCTCGTCTATTGTGTTCAAATTGGTCATTTTCTCTTCACCATTGCAAGTTTTTTCCTTCCAGATCTGTTTGTATGTGTGTGTGTTTTCCAGATTCATAGCTCTAAATGCTCTACACTTTTTAGATCCGAGACCCTAACCTCCTCAGCTGCCTCAAGGAAAACTAAAAAAAAATCACTCTTCTCGCAAGAAAGAGCTTAGTTATGTCTAATGATCAAATGATCAAGAGGTTCGTGGTTCATATCTCCCACCCACACTTGTACTCAAATCAGCCTCTTGATGCTATCTTTCTTATTCCCTCATCTACTGAAGCTTCCTTGCCGTTGGTTCTTGTGTTTTTTGTATTTGAGTTAAAATAACAAAGGAATAGCTTGGTAGGGGACAGCTAGTGCTTGAATCTTGGTGGGCGGGAGGCAACTGCTTAAGCTTTGTTCTATCCTTTCAATATTAGTCGATGATAGGACATACATGTTCAATCTGTATTTTTGCTGCATGAATTTCTTCATTCCTTCCTTGAGAAAATTTTCTCTGATATGTTTCTGTCTTTGTTTTCACTCCTTTTTTATTCTATTTTTGTCTTCGTTTGTTTGATTGGATCTGTTTTTTTCCCGATTTAGTTTCATAAGTTTCATTTGTATGAAAGAAAATCAGTTATGGGTTGCATGAATGTTTCATGTTGGAATATCACTATGAACTGGGGATGTATTTGGTGCATGTGCGAGAGTAGGCCAAGATTACAAATTCATATAAAATTATATTAAACTATAATTGATACTAGTATATCTGTTTGAACATGTGTGATCGCAAATAGACTAGGAAAGAATTCCTTCCTTCATTAGGATGAGTTGTCATTCGTGTTTGGAAAGAGGATTGGTCTAGAGACTCCACGGGATATGGCATCGAATGACAATGAGCACTTGGGGCAGATGCGCATGTGGAAGGATCTCAAGAACATTATATTTCAGTTCCCTCTGATGTTTGGCGCAACAGCCACTGTATACAAAGACTGTTGTAGGTCTGACTCCAATAGGGACTAAAATTGGTGAGGTAGTAAGAAGAAATGAACAACATATCACTCAAGATATGTTAAACGTGGTATGGATGATTACAATAAACATGCAAACAAGGCAACAGCTTGAGAGGATTGCATCTTGGTTTAAATCAAAGCATGCTATGGTGGAGTCCAGACAACGAAAGGAAGTGGTGGAGAGAGATTCCCTCAATTGTTAGAGTTGTTCCAACGGGTTAAGGTCAAACTAATGGATATCATATTCACGAATGTAGATGGAGCAAAAAAATTCCTTGCCTATTCCAATCAAGCTGAAAAGTACTTGTTGAATGCACTCTTGGGTAAAGGTGAATAAATAGCCTGTCTTGCAACAAAATCAATTTGCTTGGTTTGGAAAAGAACAATTTTTTTAAATCAACTCAATTTGATCCTTTTTTTTTTCATATTAAAACTGTGTTTACTTGTTTTTTTTTCTTTTAAGTTTGAACCACAGACTTGTTGATTCTTAGCGTACACTAGTGTCAGTATTATTATTGCACGTTCTTTTATCTATATTTTCTTACCGATTAACATAGATGTGAAGTTATTGTGTTGTGTATTTACTGCGAATTCTATGTACTACGCCTATTTCCTTG

Coding sequence (CDS)

ATGTCTGAATTGCCGGATGAGCTATGGAACCAAATTCTCCAAATTGGTGTCAAGACCTATGCTTTGACTTACAAAGATCTTTGTTGCGTCTCCATCTCTTCTCCTCGACTTCGCCGCCTCTCCGACCATGACTCTCTCTGGTCTCATCTTCTCTTCTCCGATTACCCTTCATCCTCTTCTTCTTTTCCATCTTCCGCTTCCTCCTCAAAGTCCCTTTACAAAATCAGGTTGGAGAGAGATAGATATAGGAAGAAAGCGGCGCATACGAGAGCTGTTCTTAGAAAGGAAAGTCAAATAGCTGAGCATTATAGGAGGGTTAGTCAATTAGAGGAACGGTTGATCGAGGAGACCGGCAAATGGACAACGACCTTCACTGAATTCTCTAATCTACGCACAGTCAGGGAAGCAACGGTAGCTTTGAATGTCTGGCAGCCTGAGGTCATTAGGGCAAGGCAGAAGCAAATTGTTGAACAATGCAGTGTATCTGTTGATTCTCGTTTGCGGACTCTTGATATGGAGCTCAAGCTTTGTAAGCAACAAATTGCTATTTTTCAAAAAGCACTTAAAGATGAAAAAAAGAGATTGGAATTAGCCAAAGAAGAGTTAACTTCATTGAAGTATCACCCTCTTAAGGATCATAAATCTATGAATAGCAGTAATAATGACACTCACATCAAGAGGAGGTCCAAGGATGCAATAAATAGCAAGGTAAAACAGCTACGCAGTACATGA

Protein sequence

MSELPDELWNQILQIGVKTYALTYKDLCCVSISSPRLRRLSDHDSLWSHLLFSDYPSSSSSFPSSASSSKSLYKIRLERDRYRKKAAHTRAVLRKESQIAEHYRRVSQLEERLIEETGKWTTTFTEFSNLRTVREATVALNVWQPEVIRARQKQIVEQCSVSVDSRLRTLDMELKLCKQQIAIFQKALKDEKKRLELAKEELTSLKYHPLKDHKSMNSSNNDTHIKRRSKDAINSKVKQLRST

Homology

[Close]

BLAST of Cucsat.G7801.T2 vs. ExPASy Swiss-Prot
Match: Q9CAZ0 (F-box protein SKIP24 OS=Arabidopsis thaliana OX=3702 GN=SKIP24 PE=1 SV=2)

HSP 1 Score: 219.2 bits (557), Expect = 5.2e-56
Identity = 124/235 (52.77%), Postives = 174/235 (74.04%), Query Frame = 0


Query: 2   SELPDELWNQILQIGVKTYALTYKDLCCVSISSPRLRRLSDHDSLWSHLLFSDYPSS-SS 61
           +E+PDELW +IL+IGVK+   +YKDLCC+SISS RL RLS  DSLW  LL  D+P+   S
Sbjct: 4   NEIPDELWRKILEIGVKSSTFSYKDLCCISISSRRLFRLSCDDSLWDLLLVHDFPNHIVS 63

Query: 62  SFPSSASSSKSLYKIRLERDRYRKKAAHTRAVLRKESQIAEHYRRVSQLEERLIEETGKW 121
           +  SS S +K +Y  R ER++ RK AAH RA+LRKES+I+E  RR+ +LE RL +E  + 
Sbjct: 64  ASSSSESPTKFIYMTRFEREKERKLAAHRRALLRKESEISEWGRRIRELEARLSDEAERL 123

Query: 122 TTTFTEFSNLRTVREATVALNVWQPEVIRARQKQIVEQCSVSVDSRLRTLDMELKLCKQQ 181
            ++  +FS+L  VR+A+VALNVWQPEV+R RQKQ+VEQ +V V+ RLR L+ME+KLCKQQ
Sbjct: 124 QSSSLQFSDLLKVRQASVALNVWQPEVVRGRQKQMVEQNAVPVEGRLRALEMEMKLCKQQ 183

Query: 182 IAIFQKALKDEKKRLELAKEELTSLKYHPLKDHKSMNSSNNDTHIK-RRSKDAIN 235
           I    +AL++ K R ++A +EL S+KYHPL+D+KS+ + +  ++ K ++ K +IN
Sbjct: 184 IMGLNRALREVKHRYDIAIKELESMKYHPLRDYKSIRNGDQGSNGKTKKLKTSIN 238

[Close]

BLAST of Cucsat.G7801.T2 vs. NCBI nr
Match: XP_004144305.1 (F-box protein SKIP24 isoform X1 [Cucumis sativus])

HSP 1 Score: 451 bits (1160), Expect = 2.62e-159
Identity = 241/243 (99.18%), Postives = 242/243 (99.59%), Query Frame = 0


Query: 1   MSELPDELWNQILQIGVKTYALTYKDLCCVSISSPRLRRLSDHDSLWSHLLFSDYPSSSS 60
           MSELPDELWNQILQIGVKTYALTYKDLCCVSISSPRLRRLSDHDSLWSHLLFSDYPSSSS
Sbjct: 1   MSELPDELWNQILQIGVKTYALTYKDLCCVSISSPRLRRLSDHDSLWSHLLFSDYPSSSS 60

Query: 61  SFPSSASSSKSLYKIRLERDRYRKKAAHTRAVLRKESQIAEHYRRVSQLEERLIEETGKW 120
           SFPSSASSSKSLYKIRLERDRYRKKAAHTRAVLRKESQIAEHYRRVSQLEERLIEETGKW
Sbjct: 61  SFPSSASSSKSLYKIRLERDRYRKKAAHTRAVLRKESQIAEHYRRVSQLEERLIEETGKW 120

Query: 121 TTTFTEFSNLRTVREATVALNVWQPEVIRARQKQIVEQCSVSVDSRLRTLDMELKLCKQQ 180
           TT+FTEFSNLRTVREATVALNVWQPEVIRARQKQIVEQCSVSVDSRLRTLDMELKLCKQQ
Sbjct: 121 TTSFTEFSNLRTVREATVALNVWQPEVIRARQKQIVEQCSVSVDSRLRTLDMELKLCKQQ 180

Query: 181 IAIFQKALKDEKKRLELAKEELTSLKYHPLKDHKSMNSSNNDTHIKRRSKDAINSKVKQL 240
           IAIFQKALKDEKKRLELAKEELTSLKYHPLKDHK MNSSNNDTHIKRRSKDAINSKVKQL
Sbjct: 181 IAIFQKALKDEKKRLELAKEELTSLKYHPLKDHKYMNSSNNDTHIKRRSKDAINSKVKQL 240

Query: 241 RST 243
           RST
Sbjct: 241 RST 243

[Close]

BLAST of Cucsat.G7801.T2 vs. NCBI nr
Match: XP_031740308.1 (F-box protein SKIP24 isoform X2 [Cucumis sativus])

HSP 1 Score: 436 bits (1121), Expect = 1.86e-153
Identity = 232/234 (99.15%), Postives = 233/234 (99.57%), Query Frame = 0


Query: 1   MSELPDELWNQILQIGVKTYALTYKDLCCVSISSPRLRRLSDHDSLWSHLLFSDYPSSSS 60
           MSELPDELWNQILQIGVKTYALTYKDLCCVSISSPRLRRLSDHDSLWSHLLFSDYPSSSS
Sbjct: 1   MSELPDELWNQILQIGVKTYALTYKDLCCVSISSPRLRRLSDHDSLWSHLLFSDYPSSSS 60

Query: 61  SFPSSASSSKSLYKIRLERDRYRKKAAHTRAVLRKESQIAEHYRRVSQLEERLIEETGKW 120
           SFPSSASSSKSLYKIRLERDRYRKKAAHTRAVLRKESQIAEHYRRVSQLEERLIEETGKW
Sbjct: 61  SFPSSASSSKSLYKIRLERDRYRKKAAHTRAVLRKESQIAEHYRRVSQLEERLIEETGKW 120

Query: 121 TTTFTEFSNLRTVREATVALNVWQPEVIRARQKQIVEQCSVSVDSRLRTLDMELKLCKQQ 180
           TT+FTEFSNLRTVREATVALNVWQPEVIRARQKQIVEQCSVSVDSRLRTLDMELKLCKQQ
Sbjct: 121 TTSFTEFSNLRTVREATVALNVWQPEVIRARQKQIVEQCSVSVDSRLRTLDMELKLCKQQ 180

Query: 181 IAIFQKALKDEKKRLELAKEELTSLKYHPLKDHKSMNSSNNDTHIKRRSKDAIN 234
           IAIFQKALKDEKKRLELAKEELTSLKYHPLKDHK MNSSNNDTHIKRRSKDAIN
Sbjct: 181 IAIFQKALKDEKKRLELAKEELTSLKYHPLKDHKYMNSSNNDTHIKRRSKDAIN 234

[Close]

BLAST of Cucsat.G7801.T2 vs. NCBI nr
Match: XP_016901824.1 (PREDICTED: F-box protein SKIP24 isoform X2 [Cucumis melo])

HSP 1 Score: 431 bits (1109), Expect = 1.55e-151
Identity = 234/243 (96.30%), Postives = 236/243 (97.12%), Query Frame = 0


Query: 1   MSELPDELWNQILQIGVKTYALTYKDLCCVSISSPRLRRLSDHDSLWSHLLFSDYPSSSS 60
           MSELPDELW+QILQIGVKT ALTYKDLCCVSISSPRLRRLSDHDSLWSHLL SDYPSSSS
Sbjct: 1   MSELPDELWSQILQIGVKTSALTYKDLCCVSISSPRLRRLSDHDSLWSHLLSSDYPSSSS 60

Query: 61  SFPSSASSSKSLYKIRLERDRYRKKAAHTRAVLRKESQIAEHYRRVSQLEERLIEETGKW 120
           SFPSSASSSKSLYKIRLERDRYRKKAAHTRAVLRKESQIAEHYRRV QLEERLIEET K 
Sbjct: 61  SFPSSASSSKSLYKIRLERDRYRKKAAHTRAVLRKESQIAEHYRRVGQLEERLIEETSKC 120

Query: 121 TTTFTEFSNLRTVREATVALNVWQPEVIRARQKQIVEQCSVSVDSRLRTLDMELKLCKQQ 180
           TTT TE SNLRTVREATVALNVWQPEVIRARQKQIVEQCSVSVDSRLRTLDMELKLCKQQ
Sbjct: 121 TTTLTELSNLRTVREATVALNVWQPEVIRARQKQIVEQCSVSVDSRLRTLDMELKLCKQQ 180

Query: 181 IAIFQKALKDEKKRLELAKEELTSLKYHPLKDHKSMNSSNNDTHIKRRSKDAINSKVKQL 240
           IAIFQKALKDEKKRLELAKEELTSLKYHPLKDHKSMNSSNND+HIKRRSKDAINSKVKQL
Sbjct: 181 IAIFQKALKDEKKRLELAKEELTSLKYHPLKDHKSMNSSNNDSHIKRRSKDAINSKVKQL 240

Query: 241 RST 243
           RST
Sbjct: 241 RST 243

[Close]

BLAST of Cucsat.G7801.T2 vs. NCBI nr
Match: XP_016901822.1 (PREDICTED: F-box protein SKIP24 isoform X1 [Cucumis melo] >XP_016901823.1 PREDICTED: F-box protein SKIP24 isoform X1 [Cucumis melo])

HSP 1 Score: 425 bits (1093), Expect = 5.10e-149
Identity = 234/248 (94.35%), Postives = 236/248 (95.16%), Query Frame = 0


Query: 1   MSELPDELWNQILQIGVKTYALTYKDLCCVSISSPRLRRLSDHDSLWSHLLFSDYPSSSS 60
           MSELPDELW+QILQIGVKT ALTYKDLCCVSISSPRLRRLSDHDSLWSHLL SDYPSSSS
Sbjct: 1   MSELPDELWSQILQIGVKTSALTYKDLCCVSISSPRLRRLSDHDSLWSHLLSSDYPSSSS 60

Query: 61  SFPSSASSSKSLYKIRLERDRYRKKAAHTRAVLRKESQIAEHYRRVSQLEERLIEETGKW 120
           SFPSSASSSKSLYKIRLERDRYRKKAAHTRAVLRKESQIAEHYRRV QLEERLIEET K 
Sbjct: 61  SFPSSASSSKSLYKIRLERDRYRKKAAHTRAVLRKESQIAEHYRRVGQLEERLIEETSKC 120

Query: 121 TTTFTEFSNLRTVR-----EATVALNVWQPEVIRARQKQIVEQCSVSVDSRLRTLDMELK 180
           TTT TE SNLRTVR     EATVALNVWQPEVIRARQKQIVEQCSVSVDSRLRTLDMELK
Sbjct: 121 TTTLTELSNLRTVRFGRLREATVALNVWQPEVIRARQKQIVEQCSVSVDSRLRTLDMELK 180

Query: 181 LCKQQIAIFQKALKDEKKRLELAKEELTSLKYHPLKDHKSMNSSNNDTHIKRRSKDAINS 240
           LCKQQIAIFQKALKDEKKRLELAKEELTSLKYHPLKDHKSMNSSNND+HIKRRSKDAINS
Sbjct: 181 LCKQQIAIFQKALKDEKKRLELAKEELTSLKYHPLKDHKSMNSSNNDSHIKRRSKDAINS 240

Query: 241 KVKQLRST 243
           KVKQLRST
Sbjct: 241 KVKQLRST 248

[Close]

BLAST of Cucsat.G7801.T2 vs. NCBI nr
Match: TYK09707.1 (F-box protein SKIP24 isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 416 bits (1070), Expect = 8.55e-144
Identity = 225/234 (96.15%), Postives = 227/234 (97.01%), Query Frame = 0


Query: 1   MSELPDELWNQILQIGVKTYALTYKDLCCVSISSPRLRRLSDHDSLWSHLLFSDYPSSSS 60
           MSELPDELW+QILQIGVKT ALTYKDLCCVSISSPRLRRLSDHDSLWSHLL SDYPSSSS
Sbjct: 1   MSELPDELWSQILQIGVKTSALTYKDLCCVSISSPRLRRLSDHDSLWSHLLSSDYPSSSS 60

Query: 61  SFPSSASSSKSLYKIRLERDRYRKKAAHTRAVLRKESQIAEHYRRVSQLEERLIEETGKW 120
           SFPSSASSSKSLYKIRLERDRYRKKAAHTRAVLRKESQIAEHYRRV QLEERLIEET K 
Sbjct: 61  SFPSSASSSKSLYKIRLERDRYRKKAAHTRAVLRKESQIAEHYRRVGQLEERLIEETSKC 120

Query: 121 TTTFTEFSNLRTVREATVALNVWQPEVIRARQKQIVEQCSVSVDSRLRTLDMELKLCKQQ 180
           TTT TE SNLRTVREATVALNVWQPEVIRARQKQIVEQCSVSVDSRLRTLDMELKLCKQQ
Sbjct: 121 TTTLTELSNLRTVREATVALNVWQPEVIRARQKQIVEQCSVSVDSRLRTLDMELKLCKQQ 180

Query: 181 IAIFQKALKDEKKRLELAKEELTSLKYHPLKDHKSMNSSNNDTHIKRRSKDAIN 234
           IAIFQKALKDEKKRLELAKEELTSLKYHPLKDHKSMNSSNND+HIKRRSKDAIN
Sbjct: 181 IAIFQKALKDEKKRLELAKEELTSLKYHPLKDHKSMNSSNNDSHIKRRSKDAIN 234

[Close]

BLAST of Cucsat.G7801.T2 vs. ExPASy TrEMBL
Match: A0A0A0L0S2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G416990 PE=4 SV=1)

HSP 1 Score: 451 bits (1160), Expect = 1.27e-159
Identity = 241/243 (99.18%), Postives = 242/243 (99.59%), Query Frame = 0


Query: 1   MSELPDELWNQILQIGVKTYALTYKDLCCVSISSPRLRRLSDHDSLWSHLLFSDYPSSSS 60
           MSELPDELWNQILQIGVKTYALTYKDLCCVSISSPRLRRLSDHDSLWSHLLFSDYPSSSS
Sbjct: 1   MSELPDELWNQILQIGVKTYALTYKDLCCVSISSPRLRRLSDHDSLWSHLLFSDYPSSSS 60

Query: 61  SFPSSASSSKSLYKIRLERDRYRKKAAHTRAVLRKESQIAEHYRRVSQLEERLIEETGKW 120
           SFPSSASSSKSLYKIRLERDRYRKKAAHTRAVLRKESQIAEHYRRVSQLEERLIEETGKW
Sbjct: 61  SFPSSASSSKSLYKIRLERDRYRKKAAHTRAVLRKESQIAEHYRRVSQLEERLIEETGKW 120

Query: 121 TTTFTEFSNLRTVREATVALNVWQPEVIRARQKQIVEQCSVSVDSRLRTLDMELKLCKQQ 180
           TT+FTEFSNLRTVREATVALNVWQPEVIRARQKQIVEQCSVSVDSRLRTLDMELKLCKQQ
Sbjct: 121 TTSFTEFSNLRTVREATVALNVWQPEVIRARQKQIVEQCSVSVDSRLRTLDMELKLCKQQ 180

Query: 181 IAIFQKALKDEKKRLELAKEELTSLKYHPLKDHKSMNSSNNDTHIKRRSKDAINSKVKQL 240
           IAIFQKALKDEKKRLELAKEELTSLKYHPLKDHK MNSSNNDTHIKRRSKDAINSKVKQL
Sbjct: 181 IAIFQKALKDEKKRLELAKEELTSLKYHPLKDHKYMNSSNNDTHIKRRSKDAINSKVKQL 240

Query: 241 RST 243
           RST
Sbjct: 241 RST 243

[Close]

BLAST of Cucsat.G7801.T2 vs. ExPASy TrEMBL
Match: A0A1S4E0S8 (F-box protein SKIP24 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103495869 PE=4 SV=1)

HSP 1 Score: 431 bits (1109), Expect = 7.52e-152
Identity = 234/243 (96.30%), Postives = 236/243 (97.12%), Query Frame = 0


Query: 1   MSELPDELWNQILQIGVKTYALTYKDLCCVSISSPRLRRLSDHDSLWSHLLFSDYPSSSS 60
           MSELPDELW+QILQIGVKT ALTYKDLCCVSISSPRLRRLSDHDSLWSHLL SDYPSSSS
Sbjct: 1   MSELPDELWSQILQIGVKTSALTYKDLCCVSISSPRLRRLSDHDSLWSHLLSSDYPSSSS 60

Query: 61  SFPSSASSSKSLYKIRLERDRYRKKAAHTRAVLRKESQIAEHYRRVSQLEERLIEETGKW 120
           SFPSSASSSKSLYKIRLERDRYRKKAAHTRAVLRKESQIAEHYRRV QLEERLIEET K 
Sbjct: 61  SFPSSASSSKSLYKIRLERDRYRKKAAHTRAVLRKESQIAEHYRRVGQLEERLIEETSKC 120

Query: 121 TTTFTEFSNLRTVREATVALNVWQPEVIRARQKQIVEQCSVSVDSRLRTLDMELKLCKQQ 180
           TTT TE SNLRTVREATVALNVWQPEVIRARQKQIVEQCSVSVDSRLRTLDMELKLCKQQ
Sbjct: 121 TTTLTELSNLRTVREATVALNVWQPEVIRARQKQIVEQCSVSVDSRLRTLDMELKLCKQQ 180

Query: 181 IAIFQKALKDEKKRLELAKEELTSLKYHPLKDHKSMNSSNNDTHIKRRSKDAINSKVKQL 240
           IAIFQKALKDEKKRLELAKEELTSLKYHPLKDHKSMNSSNND+HIKRRSKDAINSKVKQL
Sbjct: 181 IAIFQKALKDEKKRLELAKEELTSLKYHPLKDHKSMNSSNNDSHIKRRSKDAINSKVKQL 240

Query: 241 RST 243
           RST
Sbjct: 241 RST 243

[Close]

BLAST of Cucsat.G7801.T2 vs. ExPASy TrEMBL
Match: A0A1S4E0Q4 (F-box protein SKIP24 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103495869 PE=4 SV=1)

HSP 1 Score: 425 bits (1093), Expect = 2.47e-149
Identity = 234/248 (94.35%), Postives = 236/248 (95.16%), Query Frame = 0


Query: 1   MSELPDELWNQILQIGVKTYALTYKDLCCVSISSPRLRRLSDHDSLWSHLLFSDYPSSSS 60
           MSELPDELW+QILQIGVKT ALTYKDLCCVSISSPRLRRLSDHDSLWSHLL SDYPSSSS
Sbjct: 1   MSELPDELWSQILQIGVKTSALTYKDLCCVSISSPRLRRLSDHDSLWSHLLSSDYPSSSS 60

Query: 61  SFPSSASSSKSLYKIRLERDRYRKKAAHTRAVLRKESQIAEHYRRVSQLEERLIEETGKW 120
           SFPSSASSSKSLYKIRLERDRYRKKAAHTRAVLRKESQIAEHYRRV QLEERLIEET K 
Sbjct: 61  SFPSSASSSKSLYKIRLERDRYRKKAAHTRAVLRKESQIAEHYRRVGQLEERLIEETSKC 120

Query: 121 TTTFTEFSNLRTVR-----EATVALNVWQPEVIRARQKQIVEQCSVSVDSRLRTLDMELK 180
           TTT TE SNLRTVR     EATVALNVWQPEVIRARQKQIVEQCSVSVDSRLRTLDMELK
Sbjct: 121 TTTLTELSNLRTVRFGRLREATVALNVWQPEVIRARQKQIVEQCSVSVDSRLRTLDMELK 180

Query: 181 LCKQQIAIFQKALKDEKKRLELAKEELTSLKYHPLKDHKSMNSSNNDTHIKRRSKDAINS 240
           LCKQQIAIFQKALKDEKKRLELAKEELTSLKYHPLKDHKSMNSSNND+HIKRRSKDAINS
Sbjct: 181 LCKQQIAIFQKALKDEKKRLELAKEELTSLKYHPLKDHKSMNSSNNDSHIKRRSKDAINS 240

Query: 241 KVKQLRST 243
           KVKQLRST
Sbjct: 241 KVKQLRST 248

[Close]

BLAST of Cucsat.G7801.T2 vs. ExPASy TrEMBL
Match: A0A5D3CCI3 (F-box protein SKIP24 isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold447G001230 PE=4 SV=1)

HSP 1 Score: 416 bits (1070), Expect = 4.14e-144
Identity = 225/234 (96.15%), Postives = 227/234 (97.01%), Query Frame = 0


Query: 1   MSELPDELWNQILQIGVKTYALTYKDLCCVSISSPRLRRLSDHDSLWSHLLFSDYPSSSS 60
           MSELPDELW+QILQIGVKT ALTYKDLCCVSISSPRLRRLSDHDSLWSHLL SDYPSSSS
Sbjct: 1   MSELPDELWSQILQIGVKTSALTYKDLCCVSISSPRLRRLSDHDSLWSHLLSSDYPSSSS 60

Query: 61  SFPSSASSSKSLYKIRLERDRYRKKAAHTRAVLRKESQIAEHYRRVSQLEERLIEETGKW 120
           SFPSSASSSKSLYKIRLERDRYRKKAAHTRAVLRKESQIAEHYRRV QLEERLIEET K 
Sbjct: 61  SFPSSASSSKSLYKIRLERDRYRKKAAHTRAVLRKESQIAEHYRRVGQLEERLIEETSKC 120

Query: 121 TTTFTEFSNLRTVREATVALNVWQPEVIRARQKQIVEQCSVSVDSRLRTLDMELKLCKQQ 180
           TTT TE SNLRTVREATVALNVWQPEVIRARQKQIVEQCSVSVDSRLRTLDMELKLCKQQ
Sbjct: 121 TTTLTELSNLRTVREATVALNVWQPEVIRARQKQIVEQCSVSVDSRLRTLDMELKLCKQQ 180

Query: 181 IAIFQKALKDEKKRLELAKEELTSLKYHPLKDHKSMNSSNNDTHIKRRSKDAIN 234
           IAIFQKALKDEKKRLELAKEELTSLKYHPLKDHKSMNSSNND+HIKRRSKDAIN
Sbjct: 181 IAIFQKALKDEKKRLELAKEELTSLKYHPLKDHKSMNSSNNDSHIKRRSKDAIN 234

[Close]

BLAST of Cucsat.G7801.T2 vs. ExPASy TrEMBL
Match: A0A1S3C1S8 (F-box protein SKIP24 isoform X3 OS=Cucumis melo OX=3656 GN=LOC103495869 PE=4 SV=1)

HSP 1 Score: 411 bits (1056), Expect = 8.65e-144
Identity = 226/242 (93.39%), Postives = 228/242 (94.21%), Query Frame = 0


Query: 1   MSELPDELWNQILQIGVKTYALTYKDLCCVSISSPRLRRLSDHDSLWSHLLFSDYPSSSS 60
           MSELPDELW+QILQIGVKT ALTYKDLCCVSISSPRLRRLSDHDSLWSHLL SDYPSSSS
Sbjct: 1   MSELPDELWSQILQIGVKTSALTYKDLCCVSISSPRLRRLSDHDSLWSHLLSSDYPSSSS 60

Query: 61  SFPSSASSSKSLYKIRLERDRYRKKAAHTRAVLRKESQIAEHYRRVSQLEERLIEETGKW 120
           SFPSSASSSKSLYKIRLERDRYRKKAAHTRAVLRKESQIAEHYRRV QLEERLIEET K 
Sbjct: 61  SFPSSASSSKSLYKIRLERDRYRKKAAHTRAVLRKESQIAEHYRRVGQLEERLIEETSKC 120

Query: 121 TTTFTEFSNLRTVR-----EATVALNVWQPEVIRARQKQIVEQCSVSVDSRLRTLDMELK 180
           TTT TE SNLRTVR     EATVALNVWQPEVIRARQKQIVEQCSVSVDSRLRTLDMELK
Sbjct: 121 TTTLTELSNLRTVRFGRLREATVALNVWQPEVIRARQKQIVEQCSVSVDSRLRTLDMELK 180

Query: 181 LCKQQIAIFQKALKDEKKRLELAKEELTSLKYHPLKDHKSMNSSNNDTHIKRRSKDAINS 237
           LCKQQIAIFQKALKDEKKRLELAKEELTSLKYHPLKDHKSMNSSNND+HIKRRSKDAIN 
Sbjct: 181 LCKQQIAIFQKALKDEKKRLELAKEELTSLKYHPLKDHKSMNSSNNDSHIKRRSKDAINC 240

The following BLAST results are available for this feature:

BLAST of Cucsat.G7801.T2 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9CAZ0	5.2e-56	52.77	F-box protein SKIP24 OS=Arabidopsis thaliana OX=3702 GN=SKIP24 PE=1 SV=2	[more]

BLAST of Cucsat.G7801.T2 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004144305.1	2.62e-159	99.18	F-box protein SKIP24 isoform X1 [Cucumis sativus]	[more]
XP_031740308.1	1.86e-153	99.15	F-box protein SKIP24 isoform X2 [Cucumis sativus]	[more]
XP_016901824.1	1.55e-151	96.30	PREDICTED: F-box protein SKIP24 isoform X2 [Cucumis melo]	[more]
XP_016901822.1	5.10e-149	94.35	PREDICTED: F-box protein SKIP24 isoform X1 [Cucumis melo] >XP_016901823.1 PREDIC...	[more]
TYK09707.1	8.55e-144	96.15	F-box protein SKIP24 isoform X2 [Cucumis melo var. makuwa]	[more]

BLAST of Cucsat.G7801.T2 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L0S2	1.27e-159	99.18	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G416990 PE=4 SV=1	[more]
A0A1S4E0S8	7.52e-152	96.30	F-box protein SKIP24 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103495869 PE=4 SV=...	[more]
A0A1S4E0Q4	2.47e-149	94.35	F-box protein SKIP24 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103495869 PE=4 SV=...	[more]
A0A5D3CCI3	4.14e-144	96.15	F-box protein SKIP24 isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_...	[more]
A0A1S3C1S8	8.65e-144	93.39	F-box protein SKIP24 isoform X3 OS=Cucumis melo OX=3656 GN=LOC103495869 PE=4 SV=...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (B10) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 92..112
None	No IPR available	COILS	Coil	Coil	coord: 181..208
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 208..243
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 208..235
IPR036047	F-box-like domain superfamily	SUPERFAMILY	81383	F-box domain	coord: 1..76

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cucsat.G7801	Cucsat.G7801	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cucsat.G7801.T2.E1	Cucsat.G7801.T2.E1	exon
Cucsat.G7801.T2.E2	Cucsat.G7801.T2.E2	exon
Cucsat.G7801.T2.E3	Cucsat.G7801.T2.E3	exon
Cucsat.G7801.T2.E4	Cucsat.G7801.T2.E4	exon
Cucsat.G7801.T2.E5	Cucsat.G7801.T2.E5	exon
Cucsat.G7801.T2.E6	Cucsat.G7801.T2.E6	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cucsat.G7801.T2.C1	Cucsat.G7801.T2.C1	CDS
Cucsat.G7801.T2.C2	Cucsat.G7801.T2.C2	CDS
Cucsat.G7801.T2.C3	Cucsat.G7801.T2.C3	CDS
Cucsat.G7801.T2.C4	Cucsat.G7801.T2.C4	CDS
Cucsat.G7801.T2.C5	Cucsat.G7801.T2.C5	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cucsat.G7801.T2	Cucsat.G7801.T2-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005886	plasma membrane
cellular_component	GO:0005634	nucleus
molecular_function	GO:0005515	protein binding