Cucsat.G6821.T4 (mRNA) Cucumber (B10) v3

Overview
NameCucsat.G6821.T4
TypemRNA
OrganismCucumis sativus L. var. sativus cv B10 (Cucumber (B10) v3)
DescriptionCondensin-2 complex subunit H2
Locationctg1522: 392577 .. 397000 (-)
RNA-Seq ExpressionCucsat.G6821.T4
SyntenyCucsat.G6821.T4
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
GATTTTGAGATTATTAGGACTAATAAGTTGAAATAAAGTCTACATTTCCTTCTCCCGCGTGTTCTCTTCTTGCCTGGCTTTCTCCTTCTCCCTCACTTTCTCTTCTACTAAGGCAAAGTGCAACCCGACTTTCACTCGTCTCCTTTCTCACTCGCCGTCGCCTCTCTTTCACCGTCGCCGACTGTTCAGGACGCTGTGGTGGTCAGTACATGTGCAGCGTGCAAGATTCTGCACCGAGAAATCGTATTGGCGCCCTATTTTCCTCCCTCTGAGTCTCTCAAGTTCCCCTGCTCACTGTATCATCCGCATCTTCGGCATCTTCGGCGCTACCAATATCATCAAATGTACTTCCTTAACCCCTAATTTTTTTGTTTCTTTCTTTCAAATGTCGATTGTTATTAGGTTTAGAAATTCCATTCTGAAAATTGAAAATTGAAGTTAAAACCATCTAATTAGTTTGTATAAAATAAGTTGGAAATTAGGTGTGTAAATTCTGAGCAATTGAAGTATCTAATTAGTTTGATAATGCAAATTTCAAGCTGAAAAGTTTTCTTGGAGTTGATATCTTTCAATTTTCAATCTGAAGATGACTACTAAAACCGACGGTACCGGAGAAGAGGCTGCTTTTGACATGCTGCAACCGGAGCGTGACCTTCGGTTGAATTGGGAAGTCGACCTCGCCCAGAACCTCGAGAGGTATCTTTTGCAGATTTGCTCAGGTGAGTTTCAGTGCGAGGATGAGAACACGGTCAATTTTGCTGAAGGTGAGGTTTCACTTTTACTGTAATCGGAGTTTTGAATTGTGAAAAGAAATTGAATATTTCTGATTGAGTTGCGTGTTTTGGGTTTTTTTTTTGTTGTCGAGGCGTAGCTGCTCTCCTTCTTCAGGGCTCGATTCAAGTTTATAGCCGCAAGGTTGAATATCTTTATTCATTAGTCTTGCGAGCATTGGAGTTCATTTCCGAAAGAAGGTGGGATTATTTTATTTAATTCTGTTAGTTGTTAGTTACTTCTAGACATGTGAAAAATTATAATTTGGCATTTCATTCTTAACAAACTTCCCAAACTAAGAAATGACTAAGAATCTTATTCGACGGGAGCAAATTATTGTTTATCATGTGTTTTTTTAATATTTATTTATTTATTTATTCTTTAATAAATATTTTTATAAGTTTTTATTCCAACAGACAGCCGGATCACTTGGAAGGGACTTCTATTGAGGCGGAACAAAATGGTTCTCGTAAAATTGATGAGCACGAGAATAATTTATACTGGGTTTCAGGAGATGTACCAGGTAGCTTATCTATTTTATGTCACAATGAAACTTGTGAAATACTTAGGTAAAATAACATTTCTATTTATGATTCAAATCTTGCAGTTGATCCAAAGAATACCTTGGAGAGTACCAAGGAAGATGTACAGTTGAATCAAACGGTAAAGGCTCCTACAAATTTGGTCATTCTTGAGGGTGATTGCTTGGATCCATCTGACAATGGAGAATTAGATTCATACTTGGTAATTGGTTGCTATGATTAATTGCCTTCTTTGTTCTTTTACGTTTTATATCATTTGACCGTTAATAATAACTTCTTTTAATTATGTAGTTGGCCACTGCTAGCAATATTTTTCAAGATTTTATCATTTTAGACTTGTGTGACGTCAAAACACTTGAAAGTTCAACCAACAGGTCTCCATCAACCAGACGTTCTGGAGGAAACATGCGAAGATCATTGTTTAGCAAGACTGAGGGTGATCATGCAACTCAATCACCCATTGTCAACTATAGCTTTGTGCATGATCCTCCTGTCTGTCATATGGATGTTGGAAATTCTGAACCAGAGGACTCAAATGGTTCGGAAGAAGATGATGATCTTTGGAAGCCTTTGAATCCTCATGAATCAGGAAATTTAAAAATAAAACCATTTAAAAAAGGTTGTTTACGCACTGATTTACATTCATTTCCTTTCAATTTTTGTTTAAAAGTAAACTCTTTTTTAATTATTATTTTTAACTTTCTCTCTCTTCTTGCCCTCATGTCAGTTAAAGCTTTTAAACAGAACTACAAGAAATCTGGTAAGCATGAGTCTCTAACAGCTTTGTTTCCAATGGAAAAACTACATGGCCCCGTTAGTCAAGAGTTTGCACATATTTGGGAAGAGCAGAACCACGAATCCAAAGCACACAAAGAATTCAAATCTGTTTGATTATATGAGAAGGTACAGTTTTGTTTTGTGTATGTTTTTACTAATAAAATATTTCTTATAGATGACAGACTAACTGTTGTGACTACAGCTGCGAAATTCACTCATCAATGAAGATCATAAAAGTTGTGATTCCCTTTCTGATATGGAAGATGACAATATTGATAATGGTTTTGAAGACGCAATGCCTGATGTCAATCAGCCAGATATTGGTGATCCCAACAATCATTTTATGGATGAGGCTACGTGTTTTGAGAATGAAAAGGTTGAGTCAACTGTGCGGCACATTCTTATTGTAGGCTAATTTTTCTTTTGAATTACTATTGACTGTTAAGTCATGGGTTTTATGCAGCATGATGCTGCGGCTCATTTTGATAATGGTGAAGCGTACGAACCTGAATTTCCAGATTCTCGTTCAAGTCTAGAAGATCTTTGTCGCTCTCATCTTGTAAGTGATATCTGTGGATTTGTCACTTGACTTTACCTATTTGCAATCTGTCTGGCTCTTAATTTTTTAAGGAAAATTATTTTAAATGTCATAACTGTTGAAAATATTACAAATATAAAAAAGTTTCAGAATCTATCAATAATTGACAGCCCACTTTTTAATTATTTGTTTGTATTATTATTATTTTTGCTTTCTATTGAGTGAATTGCTCTTGTGTCTGATTTTTTTCACTAGGATACACACATTTACATTTTTACTGATCTAGAACATCTTGCTTGGTTATGGATGGATGTGGAACATATTCTCATTACTGATCAACGGAAATATAACTTGTTCAAGTTCTTAGCACTCTGCCTATCATCCTGAGAATATATGGGGCTCTTGGTATTCGTGTTTGAAAAAATGCATGGCACATGGTGAAGTTATGCAGACTTGTGCACTTAAATGTCCTTCAAAATCAAAACATTAGCCCATGATTTTAGTTGATAGATTTACAGGAGCTTTTGGAAATTATTGCAACAAAACTGCAAAACCTGGAACATGGCATCCACAGATGCAAATCATGCCTAGTTTTTTGTTTTTTTTTTGTTCTTTTTATCATATTTACAATGGTAGATGGTCACCTACAATTGTTTCTTTAAAGGATGCACTCCTTGCAAGCATTGCTGAGACTGAGAAGCAGACAGAAATGGCCACTCGAGTCTCTACATGGAAACAAAATATTGAACACAATTTGGAAGAGCAAGTAATTCAATTTAATGTTACTATACCTCAGTTTCACTTTTGTTGTCTGTATGGTATGACTGATGGTTATTTCTTCTTTTTTCTGGGTTTGAGAAGTTTTTTTTTTTTTTTTTTTGTGATAGGACAAACACCATTCATTTGATATTCATGAATACGGTCAAGCGATTCTTGAAAAATTATCTAGTGATCCTGACATAGGAGGTCTCATGCCTTTCTCTGCCGTTGTTAAAGGGCAGGAAACTTACACTGTGGCACGAAGCTTTTCCGCTCTACTTCAGTTGGTAAGGTACTGAACGTACATTATAGAAGTACCGAGATTGGTGAAATTTAGGGACTGAAAGCTTGTGATTCTATGCAAATGATTTCTTAAAATTTATTTTTTATGGATGAAAATTGGAATTGACAAGTCATTTTCAGGTGAACAATGGAGATGTGGAGCTGGAAAAGAATGGGGTTGATGGGGAGTCGATTTGCTATACTAATGTGAATCCCTTCCACATTAGGCTTGTTCGCCACGAGAAACAGGTTGATAAAACACATCAATCCTCAAGAAAGAGGTTTCTGTCCCCAGGTAAAACTAATACTGTCGAATCTAGTGTGAGAGACAAGAAGGGATGAAAGTAGGGAGGGAAGGTGGGTGGCATAAAGTGGATTCCTGAAGGCAAAAGGAGACAAAGATCTTGATTTATTGAACCAGTTGATTAACATTCTACTGGACGACATTCTCATGTACAGTTGACTGTTTGTATATTGTAATTATGGCATTGAGCATCAACCTTTTGTTGGGGACATATTTCCACTTCCTCGGTTAGATTCCTTTATTTGATGTAATTTTCAATGGCGGGAGATTGATGTATTGAAAGGAAAAGTATATATTAACCATGTAATTGTCACTGGTATTGATTCTTGTATTTTCCCTTTTCATTCCCCCTTGCTTTTTGTTTTATTATTATGCTTCTTTTCTCTAGATGACAGCAGGGATTTGCTCGTTTACAAATATTTACCATATTTTCCAGGTTTCCTATTGCTTC

Coding sequence (CDS)

ATGACTACTAAAACCGACGGTACCGGAGAAGAGGCTGCTTTTGACATGCTGCAACCGGAGCGTGACCTTCGGTTGAATTGGGAAGTCGACCTCGCCCAGAACCTCGAGAGGTATCTTTTGCAGATTTGCTCAGGTGAGTTTCAGTGCGAGGATGAGAACACGGTCAATTTTGCTGAAGCTGCTCTCCTTCTTCAGGGCTCGATTCAAGTTTATAGCCGCAAGGTTGAATATCTTTATTCATTAGTCTTGCGAGCATTGGAGTTCATTTCCGAAAGAAGACAGCCGGATCACTTGGAAGGGACTTCTATTGAGGCGGAACAAAATGGTTCTCGTAAAATTGATGAGCACGAGAATAATTTATACTGGGTTTCAGGAGATGTACCAGTTGATCCAAAGAATACCTTGGAGAGTACCAAGGAAGATGTACAGTTGAATCAAACGGTAAAGGCTCCTACAAATTTGGTCATTCTTGAGGGTGATTGCTTGGATCCATCTGACAATGGAGAATTAGATTCATACTTGGTAATTGGTTGCTATGATTAA

Protein sequence

MTTKTDGTGEEAAFDMLQPERDLRLNWEVDLAQNLERYLLQICSGEFQCEDENTVNFAEAALLLQGSIQVYSRKVEYLYSLVLRALEFISERRQPDHLEGTSIEAEQNGSRKIDEHENNLYWVSGDVPVDPKNTLESTKEDVQLNQTVKAPTNLVILEGDCLDPSDNGELDSYLVIGCYD
Homology
[Close]
BLAST of Cucsat.G6821.T4 vs. ExPASy Swiss-Prot
Match: Q9LUR0 (Condensin-2 complex subunit H2 OS=Arabidopsis thaliana OX=3702 GN=CAPH2 PE=2 SV=1)

HSP 1 Score: 187.6 bits (475), Expect = 1.3e-46
Identity = 102/180 (56.67%), Postives = 129/180 (71.67%), Query Frame = 0 

Query: 1   MTTKTDGTGEEAAFDMLQPERDLRLNWEVDLAQNLERYLLQICSGEFQCEDEN---TVNF 60
           MT+   G         +QPERDL  NWEVDL++ LE YLL+ICSGE    +E+    VNF
Sbjct: 1   MTSHGGGEVRGERIHTVQPERDLVANWEVDLSEKLEEYLLKICSGEITGNEEDGQIPVNF 60

Query: 61  AEAALLLQGSIQVYSRKVEYLYSLVLRALEFISERRQPDHLEGTSIEAEQNGSRKIDEHE 120
           AEAALLLQGS+QVYS+KVEYLY+LVLR LEF+S++R  +  +GTS E E + SR++DE E
Sbjct: 61  AEAALLLQGSVQVYSKKVEYLYNLVLRTLEFLSKQRDQEQSKGTSNENEASSSRQVDEEE 120

Query: 121 NNLYWVSGDVPVDPKNTLEST-KEDVQLNQTVKAPTNLVILEGDCLDPS-DNGELDSYLV 176
           N+L+W   D+PVD KN L+S+   D   +Q VK P NLV+LEGDCLD S D GEL+SYL+
Sbjct: 121 NDLFWNVDDIPVDTKNRLDSSVGGDTCPSQFVKPPANLVVLEGDCLDTSGDGGELESYLL 180

[Close]
BLAST of Cucsat.G6821.T4 vs. ExPASy Swiss-Prot
Match: Q28GV1 (Condensin-2 complex subunit H2 OS=Xenopus tropicalis OX=8364 GN=ncaph2 PE=2 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 1.6e-17
Identity = 67/160 (41.88%), Postives = 91/160 (56.88%), Query Frame = 0 

Query: 16  MLQPERDLRLNWEVDLAQNLERYLL---QICSGEFQCEDENTVNFAEAALLLQGSIQVYS 75
           +LQP RDL  NWEVD+A  L  YL    QIC   F    + T+NFAEAALL+QGS  +YS
Sbjct: 11  LLQPIRDLTKNWEVDVAAQLGEYLEELDQICI-SFD-GGKTTMNFAEAALLIQGSACIYS 70

Query: 76  RKVEYLYSLVLRALEFISERR---QPDHLEGTSIEAEQNGSRKIDEHENNLYWVSGDVPV 135
           +KVEYLYSLV +AL+FIS ++   QP  +    ++ +   + + DE E    ++S D  +
Sbjct: 71  KKVEYLYSLVYQALDFISNKKRDQQPASVGADGVDKDATFAHRNDEEE----FLSLDDII 130

Query: 136 DPKNTLESTKEDVQLNQTVKAPTNLVILEGDCLDPSDNGE 170
           DPK T    K+D  L+       N+V L    L P +  E
Sbjct: 131 DPKKTNVDIKKDQVLH-----VVNIVPLTPMALVPPEETE 159

[Close]
BLAST of Cucsat.G6821.T4 vs. ExPASy Swiss-Prot
Match: Q641G4 (Condensin-2 complex subunit H2 OS=Xenopus laevis OX=8355 GN=ncaph2 PE=1 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 8.8e-16
Identity = 59/133 (44.36%), Postives = 77/133 (57.89%), Query Frame = 0 

Query: 16  MLQPERDLRLNWEVDLAQNLERYLL---QICSGEFQCEDENTVNFAEAALLLQGSIQVYS 75
           +LQP RDL  NWEVD+A  L  YL    QIC   F    + T+NFAEAALL+QGS  +YS
Sbjct: 11  LLQPVRDLTKNWEVDVAAQLGEYLEELDQICI-SFD-GGKTTMNFAEAALLIQGSACIYS 70

Query: 76  RKVEYLYSLVLRALEFISERRQPDHLEGTSIEAEQNGSRKIDEHENNLYWVSGDVPVDPK 135
           +KVEYLYSLV +AL+FIS +++    + TS+ A+         H N+         +D K
Sbjct: 71  KKVEYLYSLVYQALDFISNKKRVQ--QPTSVGADGEDKDATFAHRNDEEEFLSLDDIDSK 130

Query: 136 NTLESTKEDVQLN 146
            T    K+D  LN
Sbjct: 131 KTNVDLKKDHILN 139

[Close]
BLAST of Cucsat.G6821.T4 vs. ExPASy Swiss-Prot
Match: Q6IBW4 (Condensin-2 complex subunit H2 OS=Homo sapiens OX=9606 GN=NCAPH2 PE=1 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 1.5e-15
Identity = 64/134 (47.76%), Postives = 77/134 (57.46%), Query Frame = 0 

Query: 11  EAAF-DMLQPERDLRLNWEVDLAQNLERYLL---QICSGEFQCEDENTVNFAEAALLLQG 70
           EA F  +LQP RDL  NWEVD+A  L  YL    QIC   F  E + T+NF EAALL+QG
Sbjct: 5   EARFAHLLQPIRDLTKNWEVDVAAQLGEYLEELDQICI-SFD-EGKTTMNFIEAALLIQG 64

Query: 71  SIQVYSRKVEYLYSLVLRALEFISERRQPDHLEGTSIEAEQNG--SRKIDEHENNLYWVS 130
           S  VYS+KVEYLYSLV +AL+FIS +R+   L     E   NG  S  + +   N +   
Sbjct: 65  SACVYSKKVEYLYSLVYQALDFISGKRRAKQLSSVQ-EDRANGVASSGVPQEAENEFLSL 124

Query: 131 GDVP-----VDPKN 134
            D P     VD KN
Sbjct: 125 DDFPDSRTNVDLKN 135

[Close]
BLAST of Cucsat.G6821.T4 vs. ExPASy Swiss-Prot
Match: Q8BSP2 (Condensin-2 complex subunit H2 OS=Mus musculus OX=10090 GN=Ncaph2 PE=1 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 2.5e-15
Identity = 63/150 (42.00%), Postives = 87/150 (58.00%), Query Frame = 0 

Query: 16  MLQPERDLRLNWEVDLAQNLERYLL---QICSGEFQCEDENTVNFAEAALLLQGSIQVYS 75
           +LQP RDL  NWEVD+A  L  YL    QIC   F  E + T+NF EAALL+QGS  VYS
Sbjct: 11  LLQPIRDLTKNWEVDVAAQLGEYLEELDQICI-SFD-EGKTTMNFIEAALLIQGSACVYS 70

Query: 76  RKVEYLYSLVLRALEFISERRQPDHLEGTSIEAEQNGSRKIDEHENNLYWVSGDVPVDPK 135
           +KVEYLYSLV +AL+FIS +R+   L       +++GS+K          V+ + P + +
Sbjct: 71  KKVEYLYSLVYQALDFISGKRRAKQLS----LVQEDGSKKT---------VNSETPCETE 130

Query: 136 NTLESTKE--DVQLNQTVK---APTNLVIL 158
           N   S  +  D + N  +K   A + L+I+
Sbjct: 131 NEFLSLDDFPDSRANVDLKNDQASSELLII 145

[Close]
BLAST of Cucsat.G6821.T4 vs. NCBI nr
Match: KAE8652044.1 (hypothetical protein Csa_018636 [Cucumis sativus])

HSP 1 Score: 350 bits (898), Expect = 8.45e-116
Identity = 174/175 (99.43%), Postives = 175/175 (100.00%), Query Frame = 0 

Query: 1   MTTKTDGTGEEAAFDMLQPERDLRLNWEVDLAQNLERYLLQICSGEFQCEDENTVNFAEA 60
           MTTKTDGTGEEAAFDMLQPERDLRLNWEVDLAQNLERYLLQICSGEFQCEDENTVNFAEA
Sbjct: 1   MTTKTDGTGEEAAFDMLQPERDLRLNWEVDLAQNLERYLLQICSGEFQCEDENTVNFAEA 60

Query: 61  ALLLQGSIQVYSRKVEYLYSLVLRALEFISERRQPDHLEGTSIEAEQNGSRKIDEHENNL 120
           ALLLQGSIQVYSRKVEYLYSLVLRALEFISERRQPDHLEGTSIEAEQNGSRKIDEHENNL
Sbjct: 61  ALLLQGSIQVYSRKVEYLYSLVLRALEFISERRQPDHLEGTSIEAEQNGSRKIDEHENNL 120

Query: 121 YWVSGDVPVDPKNTLESTKEDVQLNQTVKAPTNLVILEGDCLDPSDNGELDSYLV 175
           YWVSGDVPVDPKNTLESTKEDVQLNQTVKAPTNLVILEGDCLDPSDNGELDSYL+
Sbjct: 121 YWVSGDVPVDPKNTLESTKEDVQLNQTVKAPTNLVILEGDCLDPSDNGELDSYLL 175

[Close]
BLAST of Cucsat.G6821.T4 vs. NCBI nr
Match: XP_031737049.1 (condensin-2 complex subunit H2 [Cucumis sativus])

HSP 1 Score: 350 bits (898), Expect = 8.69e-116
Identity = 174/175 (99.43%), Postives = 175/175 (100.00%), Query Frame = 0 

Query: 1   MTTKTDGTGEEAAFDMLQPERDLRLNWEVDLAQNLERYLLQICSGEFQCEDENTVNFAEA 60
           MTTKTDGTGEEAAFDMLQPERDLRLNWEVDLAQNLERYLLQICSGEFQCEDENTVNFAEA
Sbjct: 1   MTTKTDGTGEEAAFDMLQPERDLRLNWEVDLAQNLERYLLQICSGEFQCEDENTVNFAEA 60

Query: 61  ALLLQGSIQVYSRKVEYLYSLVLRALEFISERRQPDHLEGTSIEAEQNGSRKIDEHENNL 120
           ALLLQGSIQVYSRKVEYLYSLVLRALEFISERRQPDHLEGTSIEAEQNGSRKIDEHENNL
Sbjct: 61  ALLLQGSIQVYSRKVEYLYSLVLRALEFISERRQPDHLEGTSIEAEQNGSRKIDEHENNL 120

Query: 121 YWVSGDVPVDPKNTLESTKEDVQLNQTVKAPTNLVILEGDCLDPSDNGELDSYLV 175
           YWVSGDVPVDPKNTLESTKEDVQLNQTVKAPTNLVILEGDCLDPSDNGELDSYL+
Sbjct: 121 YWVSGDVPVDPKNTLESTKEDVQLNQTVKAPTNLVILEGDCLDPSDNGELDSYLL 175

[Close]
BLAST of Cucsat.G6821.T4 vs. NCBI nr
Match: XP_016899903.1 (PREDICTED: condensin-2 complex subunit H2 [Cucumis melo])

HSP 1 Score: 305 bits (782), Expect = 6.59e-98
Identity = 160/177 (90.40%), Postives = 164/177 (92.66%), Query Frame = 0 

Query: 1   MTTKTDGTGEEAAFDMLQPERDLRLNWEVDLAQNLERYLLQICSGEFQC-EDEN-TVNFA 60
           MTTKTD TGE  AF MLQPERDLRLNWEVDLAQNLERYLLQIC+GEFQ  EDEN TVNFA
Sbjct: 1   MTTKTDSTGE-TAFHMLQPERDLRLNWEVDLAQNLERYLLQICAGEFQSGEDENHTVNFA 60

Query: 61  EAALLLQGSIQVYSRKVEYLYSLVLRALEFISERRQPDHLEGTSIEAEQNGSRKIDEHEN 120
           EAALLLQGSIQVYSRKVEYLYSLVLRALEF+SERRQ DHLEGTSIE EQNGSRKIDE EN
Sbjct: 61  EAALLLQGSIQVYSRKVEYLYSLVLRALEFLSERRQQDHLEGTSIETEQNGSRKIDEDEN 120

Query: 121 NLYWVSGDVPVDPKNTLESTKEDVQLNQTVKAPTNLVILEGDCLDPSDNGELDSYLV 175
           NLYWVSGDVPVDPKNTLESTKEDV LNQTVKAP NLV+LEGDCLD SDNGELDSYL+
Sbjct: 121 NLYWVSGDVPVDPKNTLESTKEDVCLNQTVKAPANLVVLEGDCLDASDNGELDSYLL 176

[Close]
BLAST of Cucsat.G6821.T4 vs. NCBI nr
Match: KAA0061066.1 (condensin-2 complex subunit H2 [Cucumis melo var. makuwa])

HSP 1 Score: 305 bits (782), Expect = 8.21e-97
Identity = 160/177 (90.40%), Postives = 164/177 (92.66%), Query Frame = 0 

Query: 1   MTTKTDGTGEEAAFDMLQPERDLRLNWEVDLAQNLERYLLQICSGEFQC-EDEN-TVNFA 60
           MTTKTD TGE  AF MLQPERDLRLNWEVDLAQNLERYLLQIC+GEFQ  EDEN TVNFA
Sbjct: 1   MTTKTDSTGE-TAFHMLQPERDLRLNWEVDLAQNLERYLLQICAGEFQSGEDENHTVNFA 60

Query: 61  EAALLLQGSIQVYSRKVEYLYSLVLRALEFISERRQPDHLEGTSIEAEQNGSRKIDEHEN 120
           EAALLLQGSIQVYSRKVEYLYSLVLRALEF+SERRQ DHLEGTSIE EQNGSRKIDE EN
Sbjct: 61  EAALLLQGSIQVYSRKVEYLYSLVLRALEFLSERRQQDHLEGTSIETEQNGSRKIDEDEN 120

Query: 121 NLYWVSGDVPVDPKNTLESTKEDVQLNQTVKAPTNLVILEGDCLDPSDNGELDSYLV 175
           NLYWVSGDVPVDPKNTLESTKEDV LNQTVKAP NLV+LEGDCLD SDNGELDSYL+
Sbjct: 121 NLYWVSGDVPVDPKNTLESTKEDVCLNQTVKAPANLVVLEGDCLDASDNGELDSYLL 176

[Close]
BLAST of Cucsat.G6821.T4 vs. NCBI nr
Match: XP_011658583.1 (condensin-2 complex subunit H2 [Cucumis sativus] >XP_011658584.1 condensin-2 complex subunit H2 [Cucumis sativus])

HSP 1 Score: 287 bits (735), Expect = 3.79e-91
Identity = 151/173 (87.28%), Postives = 158/173 (91.33%), Query Frame = 0 

Query: 5   TDGTGEEAAFDMLQPERDLRLNWEVDLAQNLERYLLQICSGEFQC-EDEN-TVNFAEAAL 64
           TD TG+ AAFDMLQPERDLRLNWEVDLAQNLERYLLQICSGEFQ  EDEN TVNFAEAAL
Sbjct: 3   TDCTGD-AAFDMLQPERDLRLNWEVDLAQNLERYLLQICSGEFQSDEDENHTVNFAEAAL 62

Query: 65  LLQGSIQVYSRKVEYLYSLVLRALEFISERRQPDHLEGTSIEAEQNGSRKIDEHENNLYW 124
           LLQGSIQVYSRKVEYLYSLVLRALEF+SERRQ  HLEG SIEAEQNGS KIDE EN+LYW
Sbjct: 63  LLQGSIQVYSRKVEYLYSLVLRALEFLSERRQQHHLEGNSIEAEQNGSHKIDEGENDLYW 122

Query: 125 VSGDVPVDPKNTLESTKEDVQLNQTVKAPTNLVILEGDCLDPSDNGELDSYLV 175
           VS DVPVDPKNTL+STKEDV LNQTVK P NL++LEGDCLD SDNGELDSYL+
Sbjct: 123 VSEDVPVDPKNTLDSTKEDVWLNQTVKPPANLIVLEGDCLDSSDNGELDSYLL 174

[Close]
BLAST of Cucsat.G6821.T4 vs. ExPASy TrEMBL
Match: A0A0A0LK75 (Condensin-2 complex subunit H2 OS=Cucumis sativus OX=3659 GN=Csa_2G349010 PE=3 SV=1)

HSP 1 Score: 350 bits (898), Expect = 1.37e-115
Identity = 174/175 (99.43%), Postives = 175/175 (100.00%), Query Frame = 0 

Query: 1   MTTKTDGTGEEAAFDMLQPERDLRLNWEVDLAQNLERYLLQICSGEFQCEDENTVNFAEA 60
           MTTKTDGTGEEAAFDMLQPERDLRLNWEVDLAQNLERYLLQICSGEFQCEDENTVNFAEA
Sbjct: 44  MTTKTDGTGEEAAFDMLQPERDLRLNWEVDLAQNLERYLLQICSGEFQCEDENTVNFAEA 103

Query: 61  ALLLQGSIQVYSRKVEYLYSLVLRALEFISERRQPDHLEGTSIEAEQNGSRKIDEHENNL 120
           ALLLQGSIQVYSRKVEYLYSLVLRALEFISERRQPDHLEGTSIEAEQNGSRKIDEHENNL
Sbjct: 104 ALLLQGSIQVYSRKVEYLYSLVLRALEFISERRQPDHLEGTSIEAEQNGSRKIDEHENNL 163

Query: 121 YWVSGDVPVDPKNTLESTKEDVQLNQTVKAPTNLVILEGDCLDPSDNGELDSYLV 175
           YWVSGDVPVDPKNTLESTKEDVQLNQTVKAPTNLVILEGDCLDPSDNGELDSYL+
Sbjct: 164 YWVSGDVPVDPKNTLESTKEDVQLNQTVKAPTNLVILEGDCLDPSDNGELDSYLL 218

[Close]
BLAST of Cucsat.G6821.T4 vs. ExPASy TrEMBL
Match: A0A1S4DVA5 (Condensin-2 complex subunit H2 OS=Cucumis melo OX=3656 GN=LOC103487716 PE=3 SV=1)

HSP 1 Score: 305 bits (782), Expect = 3.19e-98
Identity = 160/177 (90.40%), Postives = 164/177 (92.66%), Query Frame = 0 

Query: 1   MTTKTDGTGEEAAFDMLQPERDLRLNWEVDLAQNLERYLLQICSGEFQC-EDEN-TVNFA 60
           MTTKTD TGE  AF MLQPERDLRLNWEVDLAQNLERYLLQIC+GEFQ  EDEN TVNFA
Sbjct: 1   MTTKTDSTGE-TAFHMLQPERDLRLNWEVDLAQNLERYLLQICAGEFQSGEDENHTVNFA 60

Query: 61  EAALLLQGSIQVYSRKVEYLYSLVLRALEFISERRQPDHLEGTSIEAEQNGSRKIDEHEN 120
           EAALLLQGSIQVYSRKVEYLYSLVLRALEF+SERRQ DHLEGTSIE EQNGSRKIDE EN
Sbjct: 61  EAALLLQGSIQVYSRKVEYLYSLVLRALEFLSERRQQDHLEGTSIETEQNGSRKIDEDEN 120

Query: 121 NLYWVSGDVPVDPKNTLESTKEDVQLNQTVKAPTNLVILEGDCLDPSDNGELDSYLV 175
           NLYWVSGDVPVDPKNTLESTKEDV LNQTVKAP NLV+LEGDCLD SDNGELDSYL+
Sbjct: 121 NLYWVSGDVPVDPKNTLESTKEDVCLNQTVKAPANLVVLEGDCLDASDNGELDSYLL 176

[Close]
BLAST of Cucsat.G6821.T4 vs. ExPASy TrEMBL
Match: A0A5A7V3H6 (Condensin-2 complex subunit H2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold501G002040 PE=3 SV=1)

HSP 1 Score: 305 bits (782), Expect = 3.98e-97
Identity = 160/177 (90.40%), Postives = 164/177 (92.66%), Query Frame = 0 

Query: 1   MTTKTDGTGEEAAFDMLQPERDLRLNWEVDLAQNLERYLLQICSGEFQC-EDEN-TVNFA 60
           MTTKTD TGE  AF MLQPERDLRLNWEVDLAQNLERYLLQIC+GEFQ  EDEN TVNFA
Sbjct: 1   MTTKTDSTGE-TAFHMLQPERDLRLNWEVDLAQNLERYLLQICAGEFQSGEDENHTVNFA 60

Query: 61  EAALLLQGSIQVYSRKVEYLYSLVLRALEFISERRQPDHLEGTSIEAEQNGSRKIDEHEN 120
           EAALLLQGSIQVYSRKVEYLYSLVLRALEF+SERRQ DHLEGTSIE EQNGSRKIDE EN
Sbjct: 61  EAALLLQGSIQVYSRKVEYLYSLVLRALEFLSERRQQDHLEGTSIETEQNGSRKIDEDEN 120

Query: 121 NLYWVSGDVPVDPKNTLESTKEDVQLNQTVKAPTNLVILEGDCLDPSDNGELDSYLV 175
           NLYWVSGDVPVDPKNTLESTKEDV LNQTVKAP NLV+LEGDCLD SDNGELDSYL+
Sbjct: 121 NLYWVSGDVPVDPKNTLESTKEDVCLNQTVKAPANLVVLEGDCLDASDNGELDSYLL 176

[Close]
BLAST of Cucsat.G6821.T4 vs. ExPASy TrEMBL
Match: A0A0A0K0I9 (Condensin-2 complex subunit H2 OS=Cucumis sativus OX=3659 GN=Csa_7G009110 PE=3 SV=1)

HSP 1 Score: 287 bits (735), Expect = 1.84e-91
Identity = 151/173 (87.28%), Postives = 158/173 (91.33%), Query Frame = 0 

Query: 5   TDGTGEEAAFDMLQPERDLRLNWEVDLAQNLERYLLQICSGEFQC-EDEN-TVNFAEAAL 64
           TD TG+ AAFDMLQPERDLRLNWEVDLAQNLERYLLQICSGEFQ  EDEN TVNFAEAAL
Sbjct: 3   TDCTGD-AAFDMLQPERDLRLNWEVDLAQNLERYLLQICSGEFQSDEDENHTVNFAEAAL 62

Query: 65  LLQGSIQVYSRKVEYLYSLVLRALEFISERRQPDHLEGTSIEAEQNGSRKIDEHENNLYW 124
           LLQGSIQVYSRKVEYLYSLVLRALEF+SERRQ  HLEG SIEAEQNGS KIDE EN+LYW
Sbjct: 63  LLQGSIQVYSRKVEYLYSLVLRALEFLSERRQQHHLEGNSIEAEQNGSHKIDEGENDLYW 122

Query: 125 VSGDVPVDPKNTLESTKEDVQLNQTVKAPTNLVILEGDCLDPSDNGELDSYLV 175
           VS DVPVDPKNTL+STKEDV LNQTVK P NL++LEGDCLD SDNGELDSYL+
Sbjct: 123 VSEDVPVDPKNTLDSTKEDVWLNQTVKPPANLIVLEGDCLDSSDNGELDSYLL 174

[Close]
BLAST of Cucsat.G6821.T4 vs. ExPASy TrEMBL
Match: A0A6J1IXE6 (Condensin-2 complex subunit H2 OS=Cucurbita maxima OX=3661 GN=LOC111479354 PE=3 SV=1)

HSP 1 Score: 273 bits (697), Expect = 2.82e-85
Identity = 145/184 (78.80%), Postives = 158/184 (85.87%), Query Frame = 0 

Query: 1   MTTKTDGTGEEAAFDMLQPERDLRLNWEVDLAQNLERYLLQICSGEFQC---EDENTVNF 60
           MT+KT GTGE AAF MLQPERDLRLNWEVDLA+ LE YLLQIC+GEFQ    E+ N+VNF
Sbjct: 1   MTSKTGGTGE-AAFHMLQPERDLRLNWEVDLAEKLESYLLQICTGEFQSGEDENHNSVNF 60

Query: 61  AEAALLLQGSIQVYSRKVEYLYSLVLRALEFISERRQPDHLEGTSIEAEQNGSRKIDEHE 120
           AEAALLLQGSIQVYSRKVEYLYSLVLRALEF+SE+RQ DHLEGTSIEAEQ+GS KI E E
Sbjct: 61  AEAALLLQGSIQVYSRKVEYLYSLVLRALEFLSEKRQQDHLEGTSIEAEQDGSHKIAEDE 120

Query: 121 NNLYWVSGDVPVDPKNTLESTKEDVQLNQTVKAPTNLVILEGDCLDPS-DNGELDSYLVI 180
           N+L+WVS +VPVD KNTLESTKED  LNQTVK P NLV+LEGDCLD S DNGELDSYL+ 
Sbjct: 121 NDLFWVSEEVPVDTKNTLESTKEDAWLNQTVKPPANLVVLEGDCLDASGDNGELDSYLLA 180

[Close]
BLAST of Cucsat.G6821.T4 vs. TAIR 10
Match: AT3G16730.1 (CONTAINS InterPro DOMAIN/s: Non-SMC condensin II complex, subunit H2-like (InterPro:IPR009378); Has 249 Blast hits to 211 proteins in 82 species: Archae - 0; Bacteria - 0; Metazoa - 145; Fungi - 8; Plants - 30; Viruses - 0; Other Eukaryotes - 66 (source: NCBI BLink). )

HSP 1 Score: 187.6 bits (475), Expect = 8.9e-48
Identity = 102/180 (56.67%), Postives = 129/180 (71.67%), Query Frame = 0 

Query: 1   MTTKTDGTGEEAAFDMLQPERDLRLNWEVDLAQNLERYLLQICSGEFQCEDEN---TVNF 60
           MT+   G         +QPERDL  NWEVDL++ LE YLL+ICSGE    +E+    VNF
Sbjct: 1   MTSHGGGEVRGERIHTVQPERDLVANWEVDLSEKLEEYLLKICSGEITGNEEDGQIPVNF 60

Query: 61  AEAALLLQGSIQVYSRKVEYLYSLVLRALEFISERRQPDHLEGTSIEAEQNGSRKIDEHE 120
           AEAALLLQGS+QVYS+KVEYLY+LVLR LEF+S++R  +  +GTS E E + SR++DE E
Sbjct: 61  AEAALLLQGSVQVYSKKVEYLYNLVLRTLEFLSKQRDQEQSKGTSNENEASSSRQVDEEE 120

Query: 121 NNLYWVSGDVPVDPKNTLEST-KEDVQLNQTVKAPTNLVILEGDCLDPS-DNGELDSYLV 176
           N+L+W   D+PVD KN L+S+   D   +Q VK P NLV+LEGDCLD S D GEL+SYL+
Sbjct: 121 NDLFWNVDDIPVDTKNRLDSSVGGDTCPSQFVKPPANLVVLEGDCLDTSGDGGELESYLL 180

The following BLAST results are available for this feature:
BLAST of Cucsat.G6821.T4 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9LUR01.3e-4656.67Condensin-2 complex subunit H2 OS=Arabidopsis thaliana OX=3702 GN=CAPH2 PE=2 SV=... [more]
Q28GV11.6e-1741.88Condensin-2 complex subunit H2 OS=Xenopus tropicalis OX=8364 GN=ncaph2 PE=2 SV=1[more]
Q641G48.8e-1644.36Condensin-2 complex subunit H2 OS=Xenopus laevis OX=8355 GN=ncaph2 PE=1 SV=1[more]
Q6IBW41.5e-1547.76Condensin-2 complex subunit H2 OS=Homo sapiens OX=9606 GN=NCAPH2 PE=1 SV=1[more]
Q8BSP22.5e-1542.00Condensin-2 complex subunit H2 OS=Mus musculus OX=10090 GN=Ncaph2 PE=1 SV=1[more]
BLAST of Cucsat.G6821.T4 vs. NCBI nr
Match NameE-valueIdentityDescription
KAE8652044.18.45e-11699.43hypothetical protein Csa_018636 [Cucumis sativus][more]
XP_031737049.18.69e-11699.43condensin-2 complex subunit H2 [Cucumis sativus][more]
XP_016899903.16.59e-9890.40PREDICTED: condensin-2 complex subunit H2 [Cucumis melo][more]
KAA0061066.18.21e-9790.40condensin-2 complex subunit H2 [Cucumis melo var. makuwa][more]
XP_011658583.13.79e-9187.28condensin-2 complex subunit H2 [Cucumis sativus] >XP_011658584.1 condensin-2 com... [more]
BLAST of Cucsat.G6821.T4 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LK751.37e-11599.43Condensin-2 complex subunit H2 OS=Cucumis sativus OX=3659 GN=Csa_2G349010 PE=3 S... [more]
A0A1S4DVA53.19e-9890.40Condensin-2 complex subunit H2 OS=Cucumis melo OX=3656 GN=LOC103487716 PE=3 SV=1[more]
A0A5A7V3H63.98e-9790.40Condensin-2 complex subunit H2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_s... [more]
A0A0A0K0I91.84e-9187.28Condensin-2 complex subunit H2 OS=Cucumis sativus OX=3659 GN=Csa_7G009110 PE=3 S... [more]
A0A6J1IXE62.82e-8578.80Condensin-2 complex subunit H2 OS=Cucurbita maxima OX=3661 GN=LOC111479354 PE=3 ... [more]
BLAST of Cucsat.G6821.T4 vs. TAIR 10
Match NameE-valueIdentityDescription
AT3G16730.18.9e-4856.67CONTAINS InterPro DOMAIN/s: Non-SMC condensin II complex, subunit H2-like (Inter... [more]
InterPro
Analysis Name: InterPro Annotations of Cucumber (B10) v3
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR009378Condensin II complex subunit H2, N-terminalPFAMPF06278CNDH2_Ncoord: 16..123
e-value: 2.2E-35
score: 121.2
IPR031739Condensin-2 complex subunit H2PANTHERPTHR14324CONDENSIN-2 COMPLEX SUBUNIT H2coord: 5..175

Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Cucsat.G6821Cucsat.G6821gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Cucsat.G6821.T4.E1Cucsat.G6821.T4.E1exon
Cucsat.G6821.T4.E2Cucsat.G6821.T4.E2exon
Cucsat.G6821.T4.E3Cucsat.G6821.T4.E3exon
Cucsat.G6821.T4.E4Cucsat.G6821.T4.E4exon
Cucsat.G6821.T4.E5Cucsat.G6821.T4.E5exon
Cucsat.G6821.T4.E6Cucsat.G6821.T4.E6exon
Cucsat.G6821.T4.E7Cucsat.G6821.T4.E7exon
Cucsat.G6821.T4.E8Cucsat.G6821.T4.E8exon
Cucsat.G6821.T4.E9Cucsat.G6821.T4.E9exon
Cucsat.G6821.T4.E10Cucsat.G6821.T4.E10exon
Cucsat.G6821.T4.E11Cucsat.G6821.T4.E11exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Cucsat.G6821.T4.C4Cucsat.G6821.T4.C4CDS
Cucsat.G6821.T4.C3Cucsat.G6821.T4.C3CDS
Cucsat.G6821.T4.C2Cucsat.G6821.T4.C2CDS
Cucsat.G6821.T4.C1Cucsat.G6821.T4.C1CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Cucsat.G6821.T4Cucsat.G6821.T4-proteinpolypeptide


GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0030261 chromosome condensation
biological_process GO:0010032 meiotic chromosome condensation
biological_process GO:0051306 mitotic sister chromatid separation
biological_process GO:0045739 positive regulation of DNA repair
biological_process GO:2001022 positive regulation of response to DNA damage stimulus
cellular_component GO:0000793 condensed chromosome
cellular_component GO:0000796 condensin complex
cellular_component GO:0005730 nucleolus
cellular_component GO:0005634 nucleus
molecular_function GO:0003682 chromatin binding