Cucsat.G6821 (gene) Cucumber (B10) v3

Overview


Name	Cucsat.G6821
Type	gene
Organism	Cucumis sativus L. var. sativus cv B10 (Cucumber (B10) v3)
Description	Condensin-2 complex subunit H2
Location	ctg1522: 392577 .. 396998 (-)
RNA-Seq Expression	Cucsat.G6821
Synteny	Cucsat.G6821

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TTTTGAGATTATTAGGACTAATAAGTTGAAATAAAGTCTACATTTCCTTCTCCCGCGTGTTCTCTTCTTGCCTGGCTTTCTCCTTCTCCCTCACTTTCTCTTCTACTAAGGCAAAGTGCAACCCGACTTTCACTCGTCTCCTTTCTCACTCGCCGTCGCCTCTCTTTCACCGTCGCCGACTGTTCAGGACGCTGTGGTGGTCAGTACATGTGCAGCGTGCAAGATTCTGCACCGAGAAATCGTATTGGCGCCCTATTTTCCTCCCTCTGAGTCTCTCAAGTTCCCCTGCTCACTGTATCATCCGCATCTTCGGCATCTTCGGCGCTACCAATATCATCAAATGTACTTCCTTAACCCCTAATTTTTTTGTTTCTTTCTTTCAAATGTCGATTGTTATTAGGTTTAGAAATTCCATTCTGAAAATTGAAAATTGAAGTTAAAACCATCTAATTAGTTTGTATAAAATAAGTTGGAAATTAGGTGTGTAAATTCTGAGCAATTGAAGTATCTAATTAGTTTGATAATGCAAATTTCAAGCTGAAAAGTTTTCTTGGAGTTGATATCTTTCAATTTTCAATCTGAAGATGACTACTAAAACCGACGGTACCGGAGAAGAGGCTGCTTTTGACATGCTGCAACCGGAGCGTGACCTTCGGTTGAATTGGGAAGTCGACCTCGCCCAGAACCTCGAGAGGTATCTTTTGCAGATTTGCTCAGGTGAGTTTCAGTGCGAGGATGAGAACACGGTCAATTTTGCTGAAGGTGAGGTTTCACTTTTACTGTAATCGGAGTTTTGAATTGTGAAAAGAAATTGAATATTTCTGATTGAGTTGCGTGTTTTGGGTTTTTTTTTTGTTGTCGAGGCGTAGCTGCTCTCCTTCTTCAGGGCTCGATTCAAGTTTATAGCCGCAAGGTTGAATATCTTTATTCATTAGTCTTGCGAGCATTGGAGTTCATTTCCGAAAGAAGGTGGGATTATTTTATTTAATTCTGTTAGTTGTTAGTTACTTCTAGACATGTGAAAAATTATAATTTGGCATTTCATTCTTAACAAACTTCCCAAACTAAGAAATGACTAAGAATCTTATTCGACGGGAGCAAATTATTGTTTATCATGTGTTTTTTTAATATTTATTTATTTATTTATTCTTTAATAAATATTTTTATAAGTTTTTATTCCAACAGACAGCCGGATCACTTGGAAGGGACTTCTATTGAGGCGGAACAAAATGGTTCTCGTAAAATTGATGAGCACGAGAATAATTTATACTGGGTTTCAGGAGATGTACCAGGTAGCTTATCTATTTTATGTCACAATGAAACTTGTGAAATACTTAGGTAAAATAACATTTCTATTTATGATTCAAATCTTGCAGTTGATCCAAAGAATACCTTGGAGAGTACCAAGGAAGATGTACAGTTGAATCAAACGGTAAAGGCTCCTACAAATTTGGTCATTCTTGAGGGTGATTGCTTGGATCCATCTGACAATGGAGAATTAGATTCATACTTGGTAATTGGTTGCTATGATTAATTGCCTTCTTTGTTCTTTTACGTTTTATATCATTTGACCGTTAATAATAACTTCTTTTAATTATGTAGTTGGCCACTGCTAGCAATATTTTTCAAGATTTTATCATTTTAGACTTGTGTGACGTCAAAACACTTGAAAGTTCAACCAACAGGTCTCCATCAACCAGACGTTCTGGAGGAAACATGCGAAGATCATTGTTTAGCAAGACTGAGGGTGATCATGCAACTCAATCACCCATTGTCAACTATAGCTTTGTGCATGATCCTCCTGTCTGTCATATGGATGTTGGAAATTCTGAACCAGAGGACTCAAATGGTTCGGAAGAAGATGATGATCTTTGGAAGCCTTTGAATCCTCATGAATCAGGAAATTTAAAAATAAAACCATTTAAAAAAGGTTGTTTACGCACTGATTTACATTCATTTCCTTTCAATTTTTGTTTAAAAGTAAACTCTTTTTTAATTATTATTTTTAACTTTCTCTCTCTTCTTGCCCTCATGTCAGTTAAAGCTTTTAAACAGAACTACAAGAAATCTGGTAAGCATGAGTCTCTAACAGCTTTGTTTCCAATGGAAAAACTACATGGCCCCGTTAGTCAAGAGTTTGCACATATTTGGGAAGAGCAGAACCACGAATCCAAAGCACACAAAGAATTCAAATCTGTTTGATTATATGAGAAGGTACAGTTTTGTTTTGTGTATGTTTTTACTAATAAAATATTTCTTATAGATGACAGACTAACTGTTGTGACTACAGCTGCGAAATTCACTCATCAATGAAGATCATAAAAGTTGTGATTCCCTTTCTGATATGGAAGATGACAATATTGATAATGGTTTTGAAGACGCAATGCCTGATGTCAATCAGCCAGATATTGGTGATCCCAACAATCATTTTATGGATGAGGCTACGTGTTTTGAGAATGAAAAGGTTGAGTCAACTGTGCGGCACATTCTTATTGTAGGCTAATTTTTCTTTTGAATTACTATTGACTGTTAAGTCATGGGTTTTATGCAGCATGATGCTGCGGCTCATTTTGATAATGGTGAAGCGTACGAACCTGAATTTCCAGATTCTCGTTCAAGTCTAGAAGATCTTTGTCGCTCTCATCTTGTAAGTGATATCTGTGGATTTGTCACTTGACTTTACCTATTTGCAATCTGTCTGGCTCTTAATTTTTTAAGGAAAATTATTTTAAATGTCATAACTGTTGAAAATATTACAAATATAAAAAAGTTTCAGAATCTATCAATAATTGACAGCCCACTTTTTAATTATTTGTTTGTATTATTATTATTTTTGCTTTCTATTGAGTGAATTGCTCTTGTGTCTGATTTTTTTCACTAGGATACACACATTTACATTTTTACTGATCTAGAACATCTTGCTTGGTTATGGATGGATGTGGAACATATTCTCATTACTGATCAACGGAAATATAACTTGTTCAAGTTCTTAGCACTCTGCCTATCATCCTGAGAATATATGGGGCTCTTGGTATTCGTGTTTGAAAAAATGCATGGCACATGGTGAAGTTATGCAGACTTGTGCACTTAAATGTCCTTCAAAATCAAAACATTAGCCCATGATTTTAGTTGATAGATTTACAGGAGCTTTTGGAAATTATTGCAACAAAACTGCAAAACCTGGAACATGGCATCCACAGATGCAAATCATGCCTAGTTTTTTGTTTTTTTTTTGTTCTTTTTATCATATTTACAATGGTAGATGGTCACCTACAATTGTTTCTTTAAAGGATGCACTCCTTGCAAGCATTGCTGAGACTGAGAAGCAGACAGAAATGGCCACTCGAGTCTCTACATGGAAACAAAATATTGAACACAATTTGGAAGAGCAAGTAATTCAATTTAATGTTACTATACCTCAGTTTCACTTTTGTTGTCTGTATGGTATGACTGATGGTTATTTCTTCTTTTTTCTGGGTTTGAGAAGTTTTTTTTTTTTTTTTTTTGTGATAGGACAAACACCATTCATTTGATATTCATGAATACGGTCAAGCGATTCTTGAAAAATTATCTAGTGATCCTGACATAGGAGGTCTCATGCCTTTCTCTGCCGTTGTTAAAGGGCAGGAAACTTACACTGTGGCACGAAGCTTTTCCGCTCTACTTCAGTTGGTAAGGTACTGAACGTACATTATAGAAGTACCGAGATTGGTGAAATTTAGGGACTGAAAGCTTGTGATTCTATGCAAATGATTTCTTAAAATTTATTTTTTATGGATGAAAATTGGAATTGACAAGTCATTTTCAGGTGAACAATGGAGATGTGGAGCTGGAAAAGAATGGGGTTGATGGGGAGTCGATTTGCTATACTAATGTGAATCCCTTCCACATTAGGCTTGTTCGCCACGAGAAACAGGTTGATAAAACACATCAATCCTCAAGAAAGAGGTTTCTGTCCCCAGGTAAAACTAATACTGTCGAATCTAGTGTGAGAGACAAGAAGGGATGAAAGTAGGGAGGGAAGGTGGGTGGCATAAAGTGGATTCCTGAAGGCAAAAGGAGACAAAGATCTTGATTTATTGAACCAGTTGATTAACATTCTACTGGACGACATTCTCATGTACAGTTGACTGTTTGTATATTGTAATTATGGCATTGAGCATCAACCTTTTGTTGGGGACATATTTCCACTTCCTCGGTTAGATTCCTTTATTTGATGTAATTTTCAATGGCGGGAGATTGATGTATTGAAAGGAAAAGTATATATTAACCATGTAATTGTCACTGGTATTGATTCTTGTATTTTCCCTTTTCATTCCCCCTTGCTTTTTGTTTTATTATTATGCTTCTTTTCTCTAGATGACAGCAGGGATTTGCTCGTTTACAAATATTTACCATATTTTCCAGGTTTCCTATTGCTTC

Coding sequence (CDS)

ATGATTTTAGTTGATAGATTTACAGGAGCTTTTGGAAATTATTGCAACAAAACTGCAAAACCTGGAACATGGCATCCACAGATGCAAATCATGCCTAGTTTTTTGTTTTTTTTTTGTTCTTTTTATCATATTTACAATGGTAGATGGTCACCTACAATTGTTTCTTTAAAGGATGCACTCCTTGCAAGCATTGCTGAGACTGAGAAGCAGACAGAAATGGCCACTCGAGTCTCTACATGGAAACAAAATATTGAACACAATTTGGAAGAGCAAGACAAACACCATTCATTTGATATTCATGAATACGGTCAAGCGATTCTTGAAAAATTATCTAGTGATCCTGACATAGGAGGTCTCATGCCTTTCTCTGCCGTTGTTAAAGGGCAGGAAACTTACACTGTGGCACGAAGCTTTTCCGCTCTACTTCAGTTGGTAAGGTGA

Protein sequence

MILVDRFTGAFGNYCNKTAKPGTWHPQMQIMPSFLFFFCSFYHIYNGRWSPTIVSLKDALLASIAETEKQTEMATRVSTWKQNIEHNLEEQDKHHSFDIHEYGQAILEKLSSDPDIGGLMPFSAVVKGQETYTVARSFSALLQLVR

Homology

[Close]

BLAST of Cucsat.G6821 vs. ExPASy Swiss-Prot
Match: Q9LUR0 (Condensin-2 complex subunit H2 OS=Arabidopsis thaliana OX=3702 GN=CAPH2 PE=2 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 1.1e-19
Identity = 52/88 (59.09%), Postives = 68/88 (77.27%), Query Frame = 0


Query: 58  DALLASIAETEKQTEMATRVSTWKQNIEHNLEEQDKHHSFDIHEYGQAILEKLSSDPDIG 117
           DALLA+IA++EKQT++A RVSTWKQ IE NLEEQ+ H  FDI EYG  I+ KL+ + + G
Sbjct: 472 DALLANIAKSEKQTDLAARVSTWKQKIEQNLEEQELHPPFDIQEYGDRIINKLTVE-ESG 531

Query: 118 GLMPFSAVVKGQETYTVARSFSALLQLV 146
            +  F+ ++K QE + VAR+FSALLQLV
Sbjct: 532 NVETFTDLMKDQEKHEVARAFSALLQLV 558

[Close]

BLAST of Cucsat.G6821 vs. ExPASy Swiss-Prot
Match: Q6IBW4 (Condensin-2 complex subunit H2 OS=Homo sapiens OX=9606 GN=NCAPH2 PE=1 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 2.7e-07
Identity = 28/87 (32.18%), Postives = 50/87 (57.47%), Query Frame = 0


Query: 58  DALLASIAETEKQTEMATRVSTWKQNIEHNLEEQDKHHSFDIHEYGQAILEKLSSDPDIG 117
           +  +A+  +  ++TE++ R+  W+  ++  L+EQ++H  FDIH YG  ++ +    P + 
Sbjct: 476 ELFIATSQKFVQETELSQRIRDWEDTVQPLLQEQEQHVPFDIHTYGDQLVSRF---PQLN 535

Query: 118 GLMPFSAVVKGQETYTVARSFSALLQL 145
              PF+ +V GQ  + V RS  A LQL
Sbjct: 536 EWCPFAELVAGQPAFEVCRSMLASLQL 559

[Close]

BLAST of Cucsat.G6821 vs. ExPASy Swiss-Prot
Match: Q4V8I2 (Condensin-2 complex subunit H2 OS=Rattus norvegicus OX=10116 GN=Ncaph2 PE=1 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 2.7e-07
Identity = 29/87 (33.33%), Postives = 50/87 (57.47%), Query Frame = 0


Query: 58  DALLASIAETEKQTEMATRVSTWKQNIEHNLEEQDKHHSFDIHEYGQAILEKLSSDPDIG 117
           +  +A+  +  ++TE++ R+  W+  I+  L+EQ++H  FDIH YG  ++ +    P + 
Sbjct: 425 ELFIATSQKFIQETELSQRIRDWEDTIQPLLQEQEQHVPFDIHTYGDQLVSRF---PQLN 484

Query: 118 GLMPFSAVVKGQETYTVARSFSALLQL 145
              PF+ +V GQ  + V RS  A LQL
Sbjct: 485 EWCPFAELVAGQPAFEVCRSMLASLQL 508

[Close]

BLAST of Cucsat.G6821 vs. ExPASy Swiss-Prot
Match: Q8BSP2 (Condensin-2 complex subunit H2 OS=Mus musculus OX=10090 GN=Ncaph2 PE=1 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 3.5e-07
Identity = 30/87 (34.48%), Postives = 49/87 (56.32%), Query Frame = 0


Query: 58  DALLASIAETEKQTEMATRVSTWKQNIEHNLEEQDKHHSFDIHEYGQAILEKLSSDPDIG 117
           +  +A+  +  ++TE++ R+  W+  I+  L+EQ++H  FDIH YG  +  +    P + 
Sbjct: 478 ELFIATSQKFIQETELSQRIRDWEDTIQPLLQEQEQHVPFDIHIYGDQLASRF---PQLN 537

Query: 118 GLMPFSAVVKGQETYTVARSFSALLQL 145
              PFS +V GQ  + V RS  A LQL
Sbjct: 538 EWCPFSELVAGQPAFEVCRSMLASLQL 561

[Close]

BLAST of Cucsat.G6821 vs. ExPASy Swiss-Prot
Match: Q3SZL8 (Condensin-2 complex subunit H2 OS=Bos taurus OX=9913 GN=NCAPH2 PE=2 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 3.9e-06
Identity = 28/79 (35.44%), Postives = 44/79 (55.70%), Query Frame = 0


Query: 66  ETEKQTEMATRVSTWKQNIEHNLEEQDKHHSFDIHEYGQAILEKLSSDPDIGGLMPFSAV 125
           E  ++TE+   +  W+  I+  L+EQ++H  FDIH YG  ++ + S    +    PF+ +
Sbjct: 501 ELVQETELKQHIRGWEDAIQSLLQEQEEHVPFDIHTYGDQVVSRFS---QLNQWCPFAKL 560

Query: 126 VKGQETYTVARSFSALLQL 145
           V GQ  + V RS  A LQL
Sbjct: 561 VAGQPAFEVCRSMLASLQL 576

[Close]

BLAST of Cucsat.G6821 vs. NCBI nr
Match: KAE8652044.1 (hypothetical protein Csa_018636 [Cucumis sativus])

HSP 1 Score: 173 bits (438), Expect = 5.78e-48
Identity = 88/88 (100.00%), Postives = 88/88 (100.00%), Query Frame = 0


Query: 58  DALLASIAETEKQTEMATRVSTWKQNIEHNLEEQDKHHSFDIHEYGQAILEKLSSDPDIG 117
           DALLASIAETEKQTEMATRVSTWKQNIEHNLEEQDKHHSFDIHEYGQAILEKLSSDPDIG
Sbjct: 427 DALLASIAETEKQTEMATRVSTWKQNIEHNLEEQDKHHSFDIHEYGQAILEKLSSDPDIG 486

Query: 118 GLMPFSAVVKGQETYTVARSFSALLQLV 145
           GLMPFSAVVKGQETYTVARSFSALLQLV
Sbjct: 487 GLMPFSAVVKGQETYTVARSFSALLQLV 514

[Close]

BLAST of Cucsat.G6821 vs. NCBI nr
Match: XP_031737049.1 (condensin-2 complex subunit H2 [Cucumis sativus])

HSP 1 Score: 173 bits (438), Expect = 5.87e-48
Identity = 88/88 (100.00%), Postives = 88/88 (100.00%), Query Frame = 0


Query: 58  DALLASIAETEKQTEMATRVSTWKQNIEHNLEEQDKHHSFDIHEYGQAILEKLSSDPDIG 117
           DALLASIAETEKQTEMATRVSTWKQNIEHNLEEQDKHHSFDIHEYGQAILEKLSSDPDIG
Sbjct: 428 DALLASIAETEKQTEMATRVSTWKQNIEHNLEEQDKHHSFDIHEYGQAILEKLSSDPDIG 487

Query: 118 GLMPFSAVVKGQETYTVARSFSALLQLV 145
           GLMPFSAVVKGQETYTVARSFSALLQLV
Sbjct: 488 GLMPFSAVVKGQETYTVARSFSALLQLV 515

[Close]

BLAST of Cucsat.G6821 vs. NCBI nr
Match: XP_016899903.1 (PREDICTED: condensin-2 complex subunit H2 [Cucumis melo])

HSP 1 Score: 149 bits (376), Expect = 6.76e-39
Identity = 77/88 (87.50%), Postives = 81/88 (92.05%), Query Frame = 0


Query: 58  DALLASIAETEKQTEMATRVSTWKQNIEHNLEEQDKHHSFDIHEYGQAILEKLSSDPDIG 117
           DALLASIAETEKQTEMATRVSTWKQNIEHNLEEQDKH  FDIHEYGQAIL++LSS+ D G
Sbjct: 463 DALLASIAETEKQTEMATRVSTWKQNIEHNLEEQDKHPPFDIHEYGQAILDELSSEADRG 522

Query: 118 GLMPFSAVVKGQETYTVARSFSALLQLV 145
           GLMPFS VV+GQE Y VARSFSALLQLV
Sbjct: 523 GLMPFSDVVEGQEKYNVARSFSALLQLV 550

[Close]

BLAST of Cucsat.G6821 vs. NCBI nr
Match: KAA0061066.1 (condensin-2 complex subunit H2 [Cucumis melo var. makuwa])

HSP 1 Score: 149 bits (376), Expect = 1.31e-38
Identity = 77/88 (87.50%), Postives = 81/88 (92.05%), Query Frame = 0


Query: 58  DALLASIAETEKQTEMATRVSTWKQNIEHNLEEQDKHHSFDIHEYGQAILEKLSSDPDIG 117
           DALLASIAETEKQTEMATRVSTWKQNIEHNLEEQDKH  FDIHEYGQAIL++LSS+ D G
Sbjct: 463 DALLASIAETEKQTEMATRVSTWKQNIEHNLEEQDKHPPFDIHEYGQAILDELSSEADRG 522

Query: 118 GLMPFSAVVKGQETYTVARSFSALLQLV 145
           GLMPFS VV+GQE Y VARSFSALLQLV
Sbjct: 523 GLMPFSDVVEGQEKYNVARSFSALLQLV 550

[Close]

BLAST of Cucsat.G6821 vs. NCBI nr
Match: XP_038885607.1 (condensin-2 complex subunit H2 [Benincasa hispida])

HSP 1 Score: 146 bits (369), Expect = 7.04e-38
Identity = 76/88 (86.36%), Postives = 80/88 (90.91%), Query Frame = 0


Query: 58  DALLASIAETEKQTEMATRVSTWKQNIEHNLEEQDKHHSFDIHEYGQAILEKLSSDPDIG 117
           DALLASIAETEKQTEMATRVSTWKQNIEHNLEEQDKH  FDIHEYG+AILE+LS + D G
Sbjct: 463 DALLASIAETEKQTEMATRVSTWKQNIEHNLEEQDKHPPFDIHEYGKAILEELSIEADRG 522

Query: 118 GLMPFSAVVKGQETYTVARSFSALLQLV 145
           GLMPFS VV+GQE Y VARSFSALLQLV
Sbjct: 523 GLMPFSDVVEGQEKYNVARSFSALLQLV 550

[Close]

BLAST of Cucsat.G6821 vs. ExPASy TrEMBL
Match: A0A0A0LK75 (Condensin-2 complex subunit H2 OS=Cucumis sativus OX=3659 GN=Csa_2G349010 PE=3 SV=1)

HSP 1 Score: 170 bits (430), Expect = 6.99e-47
Identity = 86/87 (98.85%), Postives = 87/87 (100.00%), Query Frame = 0


Query: 58  DALLASIAETEKQTEMATRVSTWKQNIEHNLEEQDKHHSFDIHEYGQAILEKLSSDPDIG 117
           DALLASIAE+EKQTEMATRVSTWKQNIEHNLEEQDKHHSFDIHEYGQAILEKLSSDPDIG
Sbjct: 470 DALLASIAESEKQTEMATRVSTWKQNIEHNLEEQDKHHSFDIHEYGQAILEKLSSDPDIG 529

Query: 118 GLMPFSAVVKGQETYTVARSFSALLQL 144
           GLMPFSAVVKGQETYTVARSFSALLQL
Sbjct: 530 GLMPFSAVVKGQETYTVARSFSALLQL 556

[Close]

BLAST of Cucsat.G6821 vs. ExPASy TrEMBL
Match: A0A1S4DVA5 (Condensin-2 complex subunit H2 OS=Cucumis melo OX=3656 GN=LOC103487716 PE=3 SV=1)

HSP 1 Score: 149 bits (376), Expect = 3.27e-39
Identity = 77/88 (87.50%), Postives = 81/88 (92.05%), Query Frame = 0


Query: 58  DALLASIAETEKQTEMATRVSTWKQNIEHNLEEQDKHHSFDIHEYGQAILEKLSSDPDIG 117
           DALLASIAETEKQTEMATRVSTWKQNIEHNLEEQDKH  FDIHEYGQAIL++LSS+ D G
Sbjct: 463 DALLASIAETEKQTEMATRVSTWKQNIEHNLEEQDKHPPFDIHEYGQAILDELSSEADRG 522

Query: 118 GLMPFSAVVKGQETYTVARSFSALLQLV 145
           GLMPFS VV+GQE Y VARSFSALLQLV
Sbjct: 523 GLMPFSDVVEGQEKYNVARSFSALLQLV 550

[Close]

BLAST of Cucsat.G6821 vs. ExPASy TrEMBL
Match: A0A5A7V3H6 (Condensin-2 complex subunit H2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold501G002040 PE=3 SV=1)

HSP 1 Score: 149 bits (376), Expect = 6.32e-39
Identity = 77/88 (87.50%), Postives = 81/88 (92.05%), Query Frame = 0


Query: 58  DALLASIAETEKQTEMATRVSTWKQNIEHNLEEQDKHHSFDIHEYGQAILEKLSSDPDIG 117
           DALLASIAETEKQTEMATRVSTWKQNIEHNLEEQDKH  FDIHEYGQAIL++LSS+ D G
Sbjct: 463 DALLASIAETEKQTEMATRVSTWKQNIEHNLEEQDKHPPFDIHEYGQAILDELSSEADRG 522

Query: 118 GLMPFSAVVKGQETYTVARSFSALLQLV 145
           GLMPFS VV+GQE Y VARSFSALLQLV
Sbjct: 523 GLMPFSDVVEGQEKYNVARSFSALLQLV 550

[Close]

BLAST of Cucsat.G6821 vs. ExPASy TrEMBL
Match: A0A0A0K0I9 (Condensin-2 complex subunit H2 OS=Cucumis sativus OX=3659 GN=Csa_7G009110 PE=3 SV=1)

HSP 1 Score: 144 bits (364), Expect = 1.31e-37
Identity = 75/88 (85.23%), Postives = 80/88 (90.91%), Query Frame = 0


Query: 58  DALLASIAETEKQTEMATRVSTWKQNIEHNLEEQDKHHSFDIHEYGQAILEKLSSDPDIG 117
           DALLASIAE+EKQTEMATRVSTWKQNIEHNLE+QDKH  FDIHEYGQAILE+LSSD D G
Sbjct: 444 DALLASIAESEKQTEMATRVSTWKQNIEHNLEDQDKHPPFDIHEYGQAILEELSSDADRG 503

Query: 118 GLMPFSAVVKGQETYTVARSFSALLQLV 145
           GL+PFS VV+ QE Y VARSFSALLQLV
Sbjct: 504 GLVPFSNVVERQEKYNVARSFSALLQLV 531

[Close]

BLAST of Cucsat.G6821 vs. ExPASy TrEMBL
Match: W1P6N1 (CNDH2_C domain-containing protein OS=Amborella trichopoda OX=13333 GN=AMTR_s00003p00239050 PE=4 SV=1)

HSP 1 Score: 125 bits (313), Expect = 7.17e-33
Identity = 65/100 (65.00%), Postives = 75/100 (75.00%), Query Frame = 0


Query: 46  NGRWSPTIVSLKDALLASIAETEKQTEMATRVSTWKQNIEHNLEEQDKHHSFDIHEYGQA 105
           +G W        DALLASIAE+EKQTE+A RVSTWKQNIEHNLEEQD H  FDIH YG+ 
Sbjct: 5   HGEW--------DALLASIAESEKQTELAARVSTWKQNIEHNLEEQDSHPPFDIHAYGER 64

Query: 106 ILEKLSSDPDIGGLMPFSAVVKGQETYTVARSFSALLQLV 145
           ++EKLS DP     +PF+ +V GQE + VARSFSALLQLV
Sbjct: 65  LIEKLSLDPKRNSGLPFTDIVGGQEKHEVARSFSALLQLV 96

[Close]

BLAST of Cucsat.G6821 vs. TAIR 10
Match: AT3G16730.1 (CONTAINS InterPro DOMAIN/s: Non-SMC condensin II complex, subunit H2-like (InterPro:IPR009378); Has 249 Blast hits to 211 proteins in 82 species: Archae - 0; Bacteria - 0; Metazoa - 145; Fungi - 8; Plants - 30; Viruses - 0; Other Eukaryotes - 66 (source: NCBI BLink). )

HSP 1 Score: 97.8 bits (242), Expect = 7.5e-21
Identity = 52/88 (59.09%), Postives = 68/88 (77.27%), Query Frame = 0


Query: 58  DALLASIAETEKQTEMATRVSTWKQNIEHNLEEQDKHHSFDIHEYGQAILEKLSSDPDIG 117
           DALLA+IA++EKQT++A RVSTWKQ IE NLEEQ+ H  FDI EYG  I+ KL+ + + G
Sbjct: 472 DALLANIAKSEKQTDLAARVSTWKQKIEQNLEEQELHPPFDIQEYGDRIINKLTVE-ESG 531

Query: 118 GLMPFSAVVKGQETYTVARSFSALLQLV 146
            +  F+ ++K QE + VAR+FSALLQLV
Sbjct: 532 NVETFTDLMKDQEKHEVARAFSALLQLV 558

The following BLAST results are available for this feature:

BLAST of Cucsat.G6821 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LUR0	1.1e-19	59.09	Condensin-2 complex subunit H2 OS=Arabidopsis thaliana OX=3702 GN=CAPH2 PE=2 SV=...	[more]
Q6IBW4	2.7e-07	32.18	Condensin-2 complex subunit H2 OS=Homo sapiens OX=9606 GN=NCAPH2 PE=1 SV=1	[more]
Q4V8I2	2.7e-07	33.33	Condensin-2 complex subunit H2 OS=Rattus norvegicus OX=10116 GN=Ncaph2 PE=1 SV=1	[more]
Q8BSP2	3.5e-07	34.48	Condensin-2 complex subunit H2 OS=Mus musculus OX=10090 GN=Ncaph2 PE=1 SV=1	[more]
Q3SZL8	3.9e-06	35.44	Condensin-2 complex subunit H2 OS=Bos taurus OX=9913 GN=NCAPH2 PE=2 SV=1	[more]

BLAST of Cucsat.G6821 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8652044.1	5.78e-48	100.00	hypothetical protein Csa_018636 [Cucumis sativus]	[more]
XP_031737049.1	5.87e-48	100.00	condensin-2 complex subunit H2 [Cucumis sativus]	[more]
XP_016899903.1	6.76e-39	87.50	PREDICTED: condensin-2 complex subunit H2 [Cucumis melo]	[more]
KAA0061066.1	1.31e-38	87.50	condensin-2 complex subunit H2 [Cucumis melo var. makuwa]	[more]
XP_038885607.1	7.04e-38	86.36	condensin-2 complex subunit H2 [Benincasa hispida]	[more]

BLAST of Cucsat.G6821 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LK75	6.99e-47	98.85	Condensin-2 complex subunit H2 OS=Cucumis sativus OX=3659 GN=Csa_2G349010 PE=3 S...	[more]
A0A1S4DVA5	3.27e-39	87.50	Condensin-2 complex subunit H2 OS=Cucumis melo OX=3656 GN=LOC103487716 PE=3 SV=1	[more]
A0A5A7V3H6	6.32e-39	87.50	Condensin-2 complex subunit H2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_s...	[more]
A0A0A0K0I9	1.31e-37	85.23	Condensin-2 complex subunit H2 OS=Cucumis sativus OX=3659 GN=Csa_7G009110 PE=3 S...	[more]
W1P6N1	7.17e-33	65.00	CNDH2_C domain-containing protein OS=Amborella trichopoda OX=13333 GN=AMTR_s0000...	[more]

BLAST of Cucsat.G6821 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G16730.1	7.5e-21	59.09	CONTAINS InterPro DOMAIN/s: Non-SMC condensin II complex, subunit H2-like (Inter...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (B10) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR009378	Condensin II complex subunit H2, N-terminal	PFAM	PF06278	CNDH2_N	coord: 16..123 e-value: 2.6E-35 score: 121.0
IPR031739	Condensin-2 complex subunit H2	PANTHER	PTHR14324	CONDENSIN-2 COMPLEX SUBUNIT H2	coord: 5..184

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsat.G6821.T8	Cucsat.G6821.T8	mRNA
Cucsat.G6821.T9	Cucsat.G6821.T9	mRNA
Cucsat.G6821.T7	Cucsat.G6821.T7	mRNA
Cucsat.G6821.T4	Cucsat.G6821.T4	mRNA
Cucsat.G6821.T5	Cucsat.G6821.T5	mRNA
Cucsat.G6821.T2	Cucsat.G6821.T2	mRNA
Cucsat.G6821.T3	Cucsat.G6821.T3	mRNA
Cucsat.G6821.T1	Cucsat.G6821.T1	mRNA
Cucsat.G6821.T10	Cucsat.G6821.T10	mRNA
Cucsat.G6821.T11	Cucsat.G6821.T11	mRNA
Cucsat.G6821.T6	Cucsat.G6821.T6	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0010032	meiotic chromosome condensation
biological_process	GO:0051306	mitotic sister chromatid separation
biological_process	GO:0045739	positive regulation of DNA repair
biological_process	GO:2001022	positive regulation of response to DNA damage stimulus
biological_process	GO:0030261	chromosome condensation
cellular_component	GO:0000793	condensed chromosome
cellular_component	GO:0000796	condensin complex
cellular_component	GO:0005730	nucleolus
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003682	chromatin binding