Cucsat.G647.T23 (mRNA) Cucumber (B10) v3

Overview
NameCucsat.G647.T23
TypemRNA
OrganismCucumis sativus L. var. sativus cv B10 (Cucumber (B10) v3)
DescriptionMethyl-CpG-binding domain-containing protein 13 isoform X1
Locationctg1: 12651565 .. 12654625 (-)
RNA-Seq ExpressionCucsat.G647.T23
SyntenyCucsat.G647.T23
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
CCTTAACCGTTGGTAACATTTGAATTCACCTCCTTTTTCGGGTCCAAAGAACCAATCCAAGATCCTCAAAGATGGGTTGTACAGAATTTTGAAGGGAAGACTTGTAGAGGATAATCCATGGGGTTCCGACACGTTTATATGACTCGCAGGGTATTTCTCAGAACACGTGGTTTTGAAAGAATATTTTGTCGGAATCCTCCATTTCTAACGTCCTCTTCAAGAGATTTGACTCTAAAATCAGAAACTTGGGTGCCTGAAAGAGAGAAAAATAGAGAGGGTTATTGAGATTGACCGGTGGGTGAACGGAAAGTCTGAGTTTTCCGGGTGAATGATGAACCAAAATTCAAAAGACTTGCTACCACCTGGCTGGACTGTGAAAGTCAAAGTGAGGAAGAGTGGCAAAAAGGATAAGGTACTGATTTTTCTTGTCAATGGGTTTTCTTTCCCTTTGATTTCTTTTTACTTGCATTTCGTAGATCTTTAGCTGTTTTGTAAGTTTTATGTTCTACGTTGCTGTTACAACTAGCTCTTGATTTGATTTCACTCTCCTGCTCAACTTGTGTGCTGTTGGTGTATACGGAAAATGTGTTCTTTTTGCCTTGTTAGTTAGTGGTGGGAATGCAACCGAAGTCCCATAGATAAGGCCTAAGGGACGATAATGAGTATATCTTCGTTATTATGAGGAGGCCTTTTGATTTCATTAGTACGAGGCCTTTGGAGTGTTGCTCACCTAGGTGTTAGAAACTATGACTTCTGATGGGAAATTTTGGCTGTGTAGACAGTTAAAAGAAAGGAGATAGATGACTAATATTTGGGGAGAAAGTGTGTTGTCTTGTGTATGCTTCTGATATTGGACCTATTAGCTAAAACTTTCCTATGACTTTCTGATCTGAGTAAATGACTTGCCTTCTTCAGCTCCTATGGCTATGATTCCCTCATATAATTTTTGGCCAAGTTTTCCCATCAGTTTAAAGTTTCTATTTGCATTGTGAATGAACTATTTTTTATCTCTTGTTAGGCCCTTTCTGTTTAGGCTTGTGTGAAACAGCAAACTGTAATGTCATTTTTCATTCAAAAGATGCAAGATGCAACTAAAGCTTGCGTTAGTGTAACTTCCATTAACATCTTAACAAAAGAACATGTTTCTTCCTCCTAATGTCTTCTGGTTATTTGCTTTTGGTATTCAAATATGTTTTTTTTTTTTTTTTTTGATAAGAGAAAAAGAAAAAGGTATTCAAATATGTATTTGATAACCATGAATCCTATTATCATGTGGAACGTTAATACGAAAAGGAAGTCTGTATAAAGATCAGATAACTGATGGTGGCCAATAATGTTCTGTTCATTTTAAGATAAATAATTAGTTGGATCTTTGTGACTGATTCTAATGTTGCAGTATTATTTTGAACCCTCAAGTCAAATGAGATTTAATTCTAGGGCAGAGGTGTTTAGATACCTCAAAACTGCAGCTATCTGTCATCCTGAATCTGAAGAGAGCAGAACCGTCAAGGAACCAGGGAACAATGTCTGTCAAAAAAATCTACCCTCTACTCTATTTTTTGTGTTCCAATTCGCTGGTCTTTTGGATTATGAACTTTATTGATTTTTCTTTAAAAACTTCTATTATTCAAGCAATCTAGGTGGAAGTTAAGAAGACTATAGCAAAAGATTTACCTACTGGATGGATCGGAGAAATCAGAGAAACGAAGACTGCTAACAGAATAAGAAGAGATTCAGTAATTTATCATCTATTTCTATTTGTTGTGTCCTTTGGAATTTGGATATACTATCTAACCATGCACTCTGTTTCATTTATATATTTAGTGCCTTAAAGCTAGTGACATGCTAAACAACATGAATGTTAACAAATGAACTTCTGTTTGCAGTCTTACATTGATCCAGTAAATGGAAATGCACTTCGTTCAATAAGGGATGTACATCGGTATCTAACAAGTGGCAAGGTGAGCCGATTAACACATAAATCAAGGAACCAGAGAGACAACAACATTGAGTTTCAACATGATGAAATCTCTGTAAGTGTTCTTGAGGTACTCAAAGTTAAAAATGATTAGGGTCTCAAGAGTTTTCATCAGTTGGTTCAACTATCACTTAATGAAATAAGTGTAGTATTTTGGAGTGATGCCCCTCGTCGGTTCTCTCTCTCCAATGTGGGTCCTTGCTATTCACATAATTCAATATTTATGCCCTCATCGATTCTCTCTATGTATCAACGGCTGAAATTTGGGTGAATTCATCTCATCTAAAATATGTACATAAATTTTGGACTTCAATCAGGGATCTCAAATTGATGGAACCCATAAATAATATTCTAGTAACTACTTGGCAATCAAGGACAATTTGAGAGACTGAAATGTCATCAAGATTACACTGAAATGTTAAAACCAATATTGAATTAGGATCGTAAAACATGATAACAGTGGAGAATAGGGTTGGGGGGTTGGTTTGAAAAGGGTGGGAAGGAAATGTAATAGGGATTACACACCGGGCCCAAAGCCCTCATTCCAAATGCAGGTTTGAAATTACAAACCATTACAAACTCATTATATTTCAGCCTCCCAAACAGACCCTAAGTATGGTTGTATTACAATAGCGCAAGGTTTCTTTCTCTCTCGAGAATTAGACTGTAGAGTTGAGATTGGAAACAACTTGGTTACTTGCTTGTCCCTAAACATGGATAGATAAGTAAATAACATCATTTCCTTCTTAATTATTCTGTTTCTTTGACTAGTTGCACTAAACATTCCTGCTTCTGAAGTATTTTAAACCGGAAGTGCAAAAAGAAAACTGTTTCAAACTTAAGTTGATTATTCTTACCTTAGCACTAAATTTCTTATTTCCTTCTCTATTAGTCACCTGTTGTCTCCAAGAAAGAGGTGCTAACTATTGGCAAAGCAAGGAGACAGATTATATGGAGTGAGAACACATCAGAACCCAGTGAAATGGTGGATGGTGAAGCTATGTTTCCAAATGCTAGTGTTGGAGAAACCGTGCTGTTTCCAATACCTGACTCAAGCCTTGGTAGTGTTCTGAACATGCAGCT

Coding sequence (CDS)

ATGATGAACCAAAATTCAAAAGACTTGCTACCACCTGGCTGGACTGTGAAAGTCAAAGTGAGGAAGAGTGGCAAAAAGGATAAGTATTATTTTGAACCCTCAAGTCAAATGAGATTTAATTCTAGGGCAGAGGTGTTTAGATACCTCAAAACTGCAGCTATCTGTCATCCTGAATCTGAAGAGAGCAGAACCGTCAAGGAACCAGGGAACAATGTGGAAGTTAAGAAGACTATAGCAAAAGATTTACCTACTGGATGGATCGGAGAAATCAGAGAAACGAAGACTGCTAACAGAATAAGAAGAGATTCATCTTACATTGATCCAGTAAATGGAAATGCACTTCGTTCAATAAGGGATGTACATCGGTATCTAACAAGTGGCAAGGTGAGCCGATTAACACATAAATCAAGGAACCAGAGAGACAACAACATTGAGTTTCAACATGATGAAATCTCTTCACCTGTTGTCTCCAAGAAAGAGGTGCTAACTATTGGCAAAGCAAGGAGACAGATTATATGGAGTGAGAACACATCAGAACCCAGTGAAATGGTGGATGGTGAAGCTATGTTTCCAAATGCTAGTGTTGGAGAAACCGTGCTGTTTCCAATACCTGACTCAAGCCTTGGTAGTGTTCTGAACATGCAG

Protein sequence

MMNQNSKDLLPPGWTVKVKVRKSGKKDKYYFEPSSQMRFNSRAEVFRYLKTAAICHPESEESRTVKEPGNNVEVKKTIAKDLPTGWIGEIRETKTANRIRRDSSYIDPVNGNALRSIRDVHRYLTSGKVSRLTHKSRNQRDNNIEFQHDEISSPVVSKKEVLTIGKARRQIIWSENTSEPSEMVDGEAMFPNASVGETVLFPIPDSSLGSVLNMQ
Homology
[Close]
BLAST of Cucsat.G647.T23 vs. ExPASy Swiss-Prot
Match: Q9LTJ1 (Methyl-CpG-binding domain-containing protein 6 OS=Arabidopsis thaliana OX=3702 GN=MBD6 PE=1 SV=1)

HSP 1 Score: 48.5 bits (114), Expect = 1.1e-04
Identity = 23/45 (51.11%), Postives = 30/45 (66.67%), Query Frame = 0 

Query: 10  LPPGWTVKVKVRKS----GKKDKYYFEPSSQMRFNSRAEVFRYLK 51
           LPPGW V+ K+R S    G  DKYY+EP++  +F SR EV  YL+
Sbjct: 81  LPPGWRVEDKIRTSGATAGSVDKYYYEPNTGRKFRSRTEVLYYLE 125

[Close]
BLAST of Cucsat.G647.T23 vs. NCBI nr
Match: XP_011651143.1 (methyl-CpG-binding domain-containing protein 13 isoform X1 [Cucumis sativus] >KGN57399.2 hypothetical protein Csa_010431 [Cucumis sativus])

HSP 1 Score: 416 bits (1070), Expect = 6.42e-141
Identity = 208/211 (98.58%), Postives = 209/211 (99.05%), Query Frame = 0 

Query: 1   MMNQNSKDLLPPGWTVKVKVRKSGKKDKYYFEPSSQMRFNSRAEVFRYLKTAAICHPESE 60
           MMNQNSKDLLPPGWTVKVKVRKSGKKDKYYFEPSSQMRFNSRAEVFRYLKTAAICHPESE
Sbjct: 1   MMNQNSKDLLPPGWTVKVKVRKSGKKDKYYFEPSSQMRFNSRAEVFRYLKTAAICHPESE 60

Query: 61  ESRTVKEPGNNVEVKKTIAKDLPTGWIGEIRETKTANRIRRDSSYIDPVNGNALRSIRDV 120
           ESRTVKEPGNNVEVKKTIAKDLPTGWIGEIRETKTANRIRRDSSYIDPVNGNALRSIRDV
Sbjct: 61  ESRTVKEPGNNVEVKKTIAKDLPTGWIGEIRETKTANRIRRDSSYIDPVNGNALRSIRDV 120

Query: 121 HRYLTSGKVSRLTHKSRNQRDNNIEFQHDEISSPVVSKKEVLTIGKARRQIIWSENTSEP 180
           HRYLTSGKVSRLTHKSRNQRDNNIEFQHDEISSPVVSKKEVLTIGKARRQIIWSENTSEP
Sbjct: 121 HRYLTSGKVSRLTHKSRNQRDNNIEFQHDEISSPVVSKKEVLTIGKARRQIIWSENTSEP 180

Query: 181 SEMVDGEAMFPNASVGETVLFPIPDSSLGSV 211
           SEMVDGEAMFPNASVGETVLFPIPD SLG +
Sbjct: 181 SEMVDGEAMFPNASVGETVLFPIPDPSLGGI 211

[Close]
BLAST of Cucsat.G647.T23 vs. NCBI nr
Match: TYK22932.1 (methyl-CpG-binding domain-containing protein 13 isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 379 bits (972), Expect = 4.85e-126
Identity = 191/212 (90.09%), Postives = 201/212 (94.81%), Query Frame = 0 

Query: 1   MMNQNSKDLLPPGWTVKVKVRKSGKKDKYYFEPSSQMRFNSRAEVFRYLKTAAICHPESE 60
           MMNQNSKDLLPPGWTVKVKVRKSGKKDKYYFEPSSQMRFNSRAEVFRYLKTAAICHPESE
Sbjct: 1   MMNQNSKDLLPPGWTVKVKVRKSGKKDKYYFEPSSQMRFNSRAEVFRYLKTAAICHPESE 60

Query: 61  ESRTVKEPGNNVEVKKTIAKDLPTGWIGEIRETKTANRIRRDSSYIDPVNGNALRSIRDV 120
           ESRT+KEPGNNVEVKKTIAKDLPTGWIGEIRETKTANRIRRDSSYIDP+NG+ALRSIRDV
Sbjct: 61  ESRTIKEPGNNVEVKKTIAKDLPTGWIGEIRETKTANRIRRDSSYIDPINGHALRSIRDV 120

Query: 121 HRYLTSGKVSRLTHKSRNQRDNNIEFQHDEISSPVVSKKEVLTIGKARRQIIWSENTSEP 180
           HRYLTSGKVSRL HKSRNQRD+ I+ QHDEISSPVVSKKEVLTIGKARRQIIWSEN+SEP
Sbjct: 121 HRYLTSGKVSRLAHKSRNQRDSTIDLQHDEISSPVVSKKEVLTIGKARRQIIWSENSSEP 180

Query: 181 SEMVDGEAMFPNA-SVGETVLFPIPDSSLGSV 211
           SE+VD EAMFP+A SVGE V F  PD+SL  +
Sbjct: 181 SEIVDDEAMFPSATSVGEIVPFQKPDASLEGI 212

[Close]
BLAST of Cucsat.G647.T23 vs. NCBI nr
Match: KAA0033633.1 (methyl-CpG-binding domain-containing protein 13 isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 370 bits (950), Expect = 1.38e-122
Identity = 191/223 (85.65%), Postives = 201/223 (90.13%), Query Frame = 0 

Query: 1   MMNQNSKDLLPPGWTVKVKVRKSGKKDKYYFEPSSQMRFNSRAEVFRYLKTAAICHPESE 60
           MMNQNSKDLLPPGWTVKVKVRKSGKKDKYYFEPSSQMRFNSRAEVFRYLKTAAICHPESE
Sbjct: 1   MMNQNSKDLLPPGWTVKVKVRKSGKKDKYYFEPSSQMRFNSRAEVFRYLKTAAICHPESE 60

Query: 61  ESRTVKEPGNNV-----------EVKKTIAKDLPTGWIGEIRETKTANRIRRDSSYIDPV 120
           ESRT+KEPGNNV           EVKKTIAKDLPTGWIGEIRETKTANRIRRDSSYIDP+
Sbjct: 61  ESRTIKEPGNNVCQKNLPSTYNVEVKKTIAKDLPTGWIGEIRETKTANRIRRDSSYIDPI 120

Query: 121 NGNALRSIRDVHRYLTSGKVSRLTHKSRNQRDNNIEFQHDEISSPVVSKKEVLTIGKARR 180
           NG+ALRSIRDVHRYLTSGKVSRL HKSRNQRD+ I+ QHDEISSPVVSKKEVLTIGKARR
Sbjct: 121 NGHALRSIRDVHRYLTSGKVSRLAHKSRNQRDSTIDLQHDEISSPVVSKKEVLTIGKARR 180

Query: 181 QIIWSENTSEPSEMVDGEAMFPNA-SVGETVLFPIPDSSLGSV 211
           QIIWSEN+SEPSE+VD EAMFP+A SVGE V F  PD+SL  +
Sbjct: 181 QIIWSENSSEPSEIVDDEAMFPSATSVGEIVPFQKPDASLEGI 223

[Close]
BLAST of Cucsat.G647.T23 vs. NCBI nr
Match: XP_011651144.1 (methyl-CpG-binding domain-containing protein 13 isoform X2 [Cucumis sativus])

HSP 1 Score: 343 bits (880), Expect = 1.07e-112
Identity = 172/175 (98.29%), Postives = 173/175 (98.86%), Query Frame = 0 

Query: 37  MRFNSRAEVFRYLKTAAICHPESEESRTVKEPGNNVEVKKTIAKDLPTGWIGEIRETKTA 96
           MRFNSRAEVFRYLKTAAICHPESEESRTVKEPGNNVEVKKTIAKDLPTGWIGEIRETKTA
Sbjct: 1   MRFNSRAEVFRYLKTAAICHPESEESRTVKEPGNNVEVKKTIAKDLPTGWIGEIRETKTA 60

Query: 97  NRIRRDSSYIDPVNGNALRSIRDVHRYLTSGKVSRLTHKSRNQRDNNIEFQHDEISSPVV 156
           NRIRRDSSYIDPVNGNALRSIRDVHRYLTSGKVSRLTHKSRNQRDNNIEFQHDEISSPVV
Sbjct: 61  NRIRRDSSYIDPVNGNALRSIRDVHRYLTSGKVSRLTHKSRNQRDNNIEFQHDEISSPVV 120

Query: 157 SKKEVLTIGKARRQIIWSENTSEPSEMVDGEAMFPNASVGETVLFPIPDSSLGSV 211
           SKKEVLTIGKARRQIIWSENTSEPSEMVDGEAMFPNASVGETVLFPIPD SLG +
Sbjct: 121 SKKEVLTIGKARRQIIWSENTSEPSEMVDGEAMFPNASVGETVLFPIPDPSLGGI 175

[Close]
BLAST of Cucsat.G647.T23 vs. NCBI nr
Match: XP_038890261.1 (methyl-CpG-binding domain-containing protein 13 isoform X1 [Benincasa hispida])

HSP 1 Score: 338 bits (866), Expect = 5.11e-110
Identity = 177/217 (81.57%), Postives = 187/217 (86.18%), Query Frame = 0 

Query: 1   MMNQNSKDLLPPGWTVKVKVRKSGKKDKYYFEPSSQMRFNSRAEVFRYLKTAAICHPESE 60
           MMNQNS+D LPPGWTVKVKVRKSGKKDKYYFEPSSQMRFNSRAEVFRYLKTAAICHPESE
Sbjct: 1   MMNQNSEDCLPPGWTVKVKVRKSGKKDKYYFEPSSQMRFNSRAEVFRYLKTAAICHPESE 60

Query: 61  ESRTVKEPGNNVEVKKTIAKDLPTGWIGEIRETKTANRIRRDSSYIDPVNGNALRSIRDV 120
           ESRTV+EP NNVEVKKTIAKDL  GWI EI  T TANRIRRDSSYIDPV GNALRSIRDV
Sbjct: 61  ESRTVEEPRNNVEVKKTIAKDLSPGWIREITVTTTANRIRRDSSYIDPVTGNALRSIRDV 120

Query: 121 HRYLTSGKVSRLTHKSRNQRDNNIEFQHDEIS-----SPVVSKKEVLTIGKARRQIIWSE 180
           HRYLTSGKV R   KSR+QR++NIEFQHDEIS     SP VSKKE+L IGKARRQIIWS 
Sbjct: 121 HRYLTSGKVGRSARKSRSQRNSNIEFQHDEISASVLKSPAVSKKEMLAIGKARRQIIWSG 180

Query: 181 NTSEPSEMVDGEAMFPNA-SVGETVLFPIPDSSLGSV 211
           N SEP E+VD EAMFPNA SVGE++  P PDSS G +
Sbjct: 181 NLSEPREIVDDEAMFPNATSVGESMPVPKPDSSRGGI 217

[Close]
BLAST of Cucsat.G647.T23 vs. ExPASy TrEMBL
Match: A0A5D3DH45 (Methyl-CpG-binding domain-containing protein 13 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold386G00100 PE=4 SV=1)

HSP 1 Score: 379 bits (972), Expect = 2.35e-126
Identity = 191/212 (90.09%), Postives = 201/212 (94.81%), Query Frame = 0 

Query: 1   MMNQNSKDLLPPGWTVKVKVRKSGKKDKYYFEPSSQMRFNSRAEVFRYLKTAAICHPESE 60
           MMNQNSKDLLPPGWTVKVKVRKSGKKDKYYFEPSSQMRFNSRAEVFRYLKTAAICHPESE
Sbjct: 1   MMNQNSKDLLPPGWTVKVKVRKSGKKDKYYFEPSSQMRFNSRAEVFRYLKTAAICHPESE 60

Query: 61  ESRTVKEPGNNVEVKKTIAKDLPTGWIGEIRETKTANRIRRDSSYIDPVNGNALRSIRDV 120
           ESRT+KEPGNNVEVKKTIAKDLPTGWIGEIRETKTANRIRRDSSYIDP+NG+ALRSIRDV
Sbjct: 61  ESRTIKEPGNNVEVKKTIAKDLPTGWIGEIRETKTANRIRRDSSYIDPINGHALRSIRDV 120

Query: 121 HRYLTSGKVSRLTHKSRNQRDNNIEFQHDEISSPVVSKKEVLTIGKARRQIIWSENTSEP 180
           HRYLTSGKVSRL HKSRNQRD+ I+ QHDEISSPVVSKKEVLTIGKARRQIIWSEN+SEP
Sbjct: 121 HRYLTSGKVSRLAHKSRNQRDSTIDLQHDEISSPVVSKKEVLTIGKARRQIIWSENSSEP 180

Query: 181 SEMVDGEAMFPNA-SVGETVLFPIPDSSLGSV 211
           SE+VD EAMFP+A SVGE V F  PD+SL  +
Sbjct: 181 SEIVDDEAMFPSATSVGEIVPFQKPDASLEGI 212

[Close]
BLAST of Cucsat.G647.T23 vs. ExPASy TrEMBL
Match: A0A5A7ST33 (Methyl-CpG-binding domain-containing protein 13 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold239G00730 PE=4 SV=1)

HSP 1 Score: 370 bits (950), Expect = 6.69e-123
Identity = 191/223 (85.65%), Postives = 201/223 (90.13%), Query Frame = 0 

Query: 1   MMNQNSKDLLPPGWTVKVKVRKSGKKDKYYFEPSSQMRFNSRAEVFRYLKTAAICHPESE 60
           MMNQNSKDLLPPGWTVKVKVRKSGKKDKYYFEPSSQMRFNSRAEVFRYLKTAAICHPESE
Sbjct: 1   MMNQNSKDLLPPGWTVKVKVRKSGKKDKYYFEPSSQMRFNSRAEVFRYLKTAAICHPESE 60

Query: 61  ESRTVKEPGNNV-----------EVKKTIAKDLPTGWIGEIRETKTANRIRRDSSYIDPV 120
           ESRT+KEPGNNV           EVKKTIAKDLPTGWIGEIRETKTANRIRRDSSYIDP+
Sbjct: 61  ESRTIKEPGNNVCQKNLPSTYNVEVKKTIAKDLPTGWIGEIRETKTANRIRRDSSYIDPI 120

Query: 121 NGNALRSIRDVHRYLTSGKVSRLTHKSRNQRDNNIEFQHDEISSPVVSKKEVLTIGKARR 180
           NG+ALRSIRDVHRYLTSGKVSRL HKSRNQRD+ I+ QHDEISSPVVSKKEVLTIGKARR
Sbjct: 121 NGHALRSIRDVHRYLTSGKVSRLAHKSRNQRDSTIDLQHDEISSPVVSKKEVLTIGKARR 180

Query: 181 QIIWSENTSEPSEMVDGEAMFPNA-SVGETVLFPIPDSSLGSV 211
           QIIWSEN+SEPSE+VD EAMFP+A SVGE V F  PD+SL  +
Sbjct: 181 QIIWSENSSEPSEIVDDEAMFPSATSVGEIVPFQKPDASLEGI 223

[Close]
BLAST of Cucsat.G647.T23 vs. ExPASy TrEMBL
Match: A0A0A0L6H4 (MBD domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G181990 PE=4 SV=1)

HSP 1 Score: 343 bits (880), Expect = 5.17e-113
Identity = 172/175 (98.29%), Postives = 173/175 (98.86%), Query Frame = 0 

Query: 37  MRFNSRAEVFRYLKTAAICHPESEESRTVKEPGNNVEVKKTIAKDLPTGWIGEIRETKTA 96
           MRFNSRAEVFRYLKTAAICHPESEESRTVKEPGNNVEVKKTIAKDLPTGWIGEIRETKTA
Sbjct: 1   MRFNSRAEVFRYLKTAAICHPESEESRTVKEPGNNVEVKKTIAKDLPTGWIGEIRETKTA 60

Query: 97  NRIRRDSSYIDPVNGNALRSIRDVHRYLTSGKVSRLTHKSRNQRDNNIEFQHDEISSPVV 156
           NRIRRDSSYIDPVNGNALRSIRDVHRYLTSGKVSRLTHKSRNQRDNNIEFQHDEISSPVV
Sbjct: 61  NRIRRDSSYIDPVNGNALRSIRDVHRYLTSGKVSRLTHKSRNQRDNNIEFQHDEISSPVV 120

Query: 157 SKKEVLTIGKARRQIIWSENTSEPSEMVDGEAMFPNASVGETVLFPIPDSSLGSV 211
           SKKEVLTIGKARRQIIWSENTSEPSEMVDGEAMFPNASVGETVLFPIPD SLG +
Sbjct: 121 SKKEVLTIGKARRQIIWSENTSEPSEMVDGEAMFPNASVGETVLFPIPDPSLGGI 175

[Close]
BLAST of Cucsat.G647.T23 vs. ExPASy TrEMBL
Match: A0A6J1FZ67 (methyl-CpG-binding domain-containing protein 13 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111449236 PE=4 SV=1)

HSP 1 Score: 318 bits (815), Expect = 1.25e-103
Identity = 162/212 (76.42%), Postives = 181/212 (85.38%), Query Frame = 0 

Query: 1   MMNQNSKDLLPPGWTVKVKVRKSGKKDKYYFEPSSQMRFNSRAEVFRYLKTAAICHPESE 60
           MMNQ S++ LPPGWTVKVKVRKSGKKDKYY+EPSSQMRFNSRAEVFRYLKTAAIC PESE
Sbjct: 1   MMNQKSEEWLPPGWTVKVKVRKSGKKDKYYYEPSSQMRFNSRAEVFRYLKTAAICCPESE 60

Query: 61  ESRTVKEPGNNVEVKKTIAKDLPTGWIGEIRETKTANRIRRDSSYIDPVNGNALRSIRDV 120
           ESRT K+  NNVEVKKT+AK LP GWI EIRETKTANRIRRDS YIDPVNGN  RSIR+V
Sbjct: 61  ESRTFKQSQNNVEVKKTLAKGLPPGWIREIRETKTANRIRRDSFYIDPVNGNVFRSIREV 120

Query: 121 HRYLTSGKVSRLTHKSRNQRDNNIEFQHDEISSPVVSKKEVLTIGKARRQIIWSENTSEP 180
           HRY+TSG VSRL +KSR+QR  N+EFQHD+ISSP VSKKE+  IGKARRQIIW+EN  EP
Sbjct: 121 HRYITSGTVSRLAYKSRDQRGINVEFQHDDISSPAVSKKEMQAIGKARRQIIWNENLLEP 180

Query: 181 SEMVDGEAMFPNA-SVGETVLFPIPDSSLGSV 211
            E+ + EA+FPNA SVGE++    PDSS G +
Sbjct: 181 REITNDEAIFPNATSVGESMPHSEPDSSHGEI 212

[Close]
BLAST of Cucsat.G647.T23 vs. ExPASy TrEMBL
Match: A0A6J1FZ39 (methyl-CpG-binding domain-containing protein 13 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111449236 PE=4 SV=1)

HSP 1 Score: 316 bits (809), Expect = 1.12e-102
Identity = 161/208 (77.40%), Postives = 179/208 (86.06%), Query Frame = 0 

Query: 1   MMNQNSKDLLPPGWTVKVKVRKSGKKDKYYFEPSSQMRFNSRAEVFRYLKTAAICHPESE 60
           MMNQ S++ LPPGWTVKVKVRKSGKKDKYY+EPSSQMRFNSRAEVFRYLKTAAIC PESE
Sbjct: 1   MMNQKSEEWLPPGWTVKVKVRKSGKKDKYYYEPSSQMRFNSRAEVFRYLKTAAICCPESE 60

Query: 61  ESRTVKEPGNNVEVKKTIAKDLPTGWIGEIRETKTANRIRRDSSYIDPVNGNALRSIRDV 120
           ESRT K+  NNVEVKKT+AK LP GWI EIRETKTANRIRRDS YIDPVNGN  RSIR+V
Sbjct: 61  ESRTFKQSQNNVEVKKTLAKGLPPGWIREIRETKTANRIRRDSFYIDPVNGNVFRSIREV 120

Query: 121 HRYLTSGKVSRLTHKSRNQRDNNIEFQHDEISSPVVSKKEVLTIGKARRQIIWSENTSEP 180
           HRY+TSG VSRL +KSR+QR  N+EFQHD+ISSP VSKKE+  IGKARRQIIW+EN  EP
Sbjct: 121 HRYITSGTVSRLAYKSRDQRGINVEFQHDDISSPAVSKKEMQAIGKARRQIIWNENLLEP 180

Query: 181 SEMVDGEAMFPNA-SVGETVLFPIPDSS 207
            E+ + EA+FPNA SVGE++    PDSS
Sbjct: 181 REITNDEAIFPNATSVGESMPHSEPDSS 208

[Close]
BLAST of Cucsat.G647.T23 vs. TAIR 10
Match: AT5G59380.1 (methyl-CPG-binding domain 6 )

HSP 1 Score: 48.5 bits (114), Expect = 7.7e-06
Identity = 23/45 (51.11%), Postives = 30/45 (66.67%), Query Frame = 0 

Query: 10  LPPGWTVKVKVRKS----GKKDKYYFEPSSQMRFNSRAEVFRYLK 51
           LPPGW V+ K+R S    G  DKYY+EP++  +F SR EV  YL+
Sbjct: 81  LPPGWRVEDKIRTSGATAGSVDKYYYEPNTGRKFRSRTEVLYYLE 125

[Close]
BLAST of Cucsat.G647.T23 vs. TAIR 10
Match: AT3G46580.1 (methyl-CPG-binding domain protein 5 )

HSP 1 Score: 43.1 bits (100), Expect = 3.2e-04
Identity = 23/68 (33.82%), Postives = 38/68 (55.88%), Query Frame = 0 

Query: 10 LPPGWTVKVKVRKSGKK----DKYYFEPSSQMRFNSRAEVFRYLKTAAICHPESEESRTV 69
          LPP W  +++VR SG K    DK+Y+EP +  +F S+ EV  YL+      P+ +  +T 
Sbjct: 35 LPPDWRTEIRVRTSGTKAGTVDKFYYEPITGRKFRSKNEVLYYLEHGT---PKKKSVKTA 94

Query: 70 KEPGNNVE 74
          +   ++ E
Sbjct: 95 ENGDSHSE 99

The following BLAST results are available for this feature:
BLAST of Cucsat.G647.T23 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9LTJ11.1e-0451.11Methyl-CpG-binding domain-containing protein 6 OS=Arabidopsis thaliana OX=3702 G... [more]
BLAST of Cucsat.G647.T23 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_011651143.16.42e-14198.58methyl-CpG-binding domain-containing protein 13 isoform X1 [Cucumis sativus] >KG... [more]
TYK22932.14.85e-12690.09methyl-CpG-binding domain-containing protein 13 isoform X1 [Cucumis melo var. ma... [more]
KAA0033633.11.38e-12285.65methyl-CpG-binding domain-containing protein 13 isoform X1 [Cucumis melo var. ma... [more]
XP_011651144.11.07e-11298.29methyl-CpG-binding domain-containing protein 13 isoform X2 [Cucumis sativus][more]
XP_038890261.15.11e-11081.57methyl-CpG-binding domain-containing protein 13 isoform X1 [Benincasa hispida][more]
BLAST of Cucsat.G647.T23 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3DH452.35e-12690.09Methyl-CpG-binding domain-containing protein 13 isoform X1 OS=Cucumis melo var. ... [more]
A0A5A7ST336.69e-12385.65Methyl-CpG-binding domain-containing protein 13 isoform X1 OS=Cucumis melo var. ... [more]
A0A0A0L6H45.17e-11398.29MBD domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G181990 PE=4 SV... [more]
A0A6J1FZ671.25e-10376.42methyl-CpG-binding domain-containing protein 13 isoform X2 OS=Cucurbita moschata... [more]
A0A6J1FZ391.12e-10277.40methyl-CpG-binding domain-containing protein 13 isoform X1 OS=Cucurbita moschata... [more]
BLAST of Cucsat.G647.T23 vs. TAIR 10
Match NameE-valueIdentityDescription
AT5G59380.17.7e-0651.11methyl-CPG-binding domain 6 [more]
AT3G46580.13.2e-0433.82methyl-CPG-binding domain protein 5 [more]
InterPro
Analysis Name: InterPro Annotations of Cucumber (B10) v3
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.30.890.10coord: 2..57
e-value: 4.6E-14
score: 54.0
NoneNo IPR availableGENE3D3.30.890.10coord: 58..170
e-value: 3.6E-11
score: 45.1
NoneNo IPR availablePANTHERPTHR34067:SF15METHYL-CPG-BINDING DOMAIN-CONTAINING PROTEIN 13coord: 1..198
IPR001739Methyl-CpG DNA bindingPFAMPF01429MBDcoord: 76..129
e-value: 1.3E-5
score: 24.8
coord: 9..53
e-value: 5.5E-8
score: 32.4
IPR001739Methyl-CpG DNA bindingPROSITEPS50982MBDcoord: 72..151
score: 13.325759
IPR001739Methyl-CpG DNA bindingPROSITEPS50982MBDcoord: 1..70
score: 12.74779
IPR038945Methyl-CpG-binding domain-containing protein 13-likePANTHERPTHR34067OS04G0193200 PROTEINcoord: 1..198
IPR016177DNA-binding domain superfamilySUPERFAMILY54171DNA-binding domaincoord: 9..54
IPR016177DNA-binding domain superfamilySUPERFAMILY54171DNA-binding domaincoord: 79..130

Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Cucsat.G647Cucsat.G647gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Cucsat.G647.T23.E1Cucsat.G647.T23.E1exon
Cucsat.G647.T23.E2Cucsat.G647.T23.E2exon
Cucsat.G647.T23.E3Cucsat.G647.T23.E3exon
Cucsat.G647.T23.E4Cucsat.G647.T23.E4exon
Cucsat.G647.T23.E5Cucsat.G647.T23.E5exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Cucsat.G647.T23.C5Cucsat.G647.T23.C5CDS
Cucsat.G647.T23.C4Cucsat.G647.T23.C4CDS
Cucsat.G647.T23.C3Cucsat.G647.T23.C3CDS
Cucsat.G647.T23.C2Cucsat.G647.T23.C2CDS
Cucsat.G647.T23.C1Cucsat.G647.T23.C1CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Cucsat.G647.T23Cucsat.G647.T23-proteinpolypeptide


GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0005634 nucleus
molecular_function GO:0003677 DNA binding