Cucsat.G6275.T9 (mRNA) Cucumber (B10) v3
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.CATTTAGAACTTTTGTGCCTAATGGTATTTTTGGGTGGTTTTGTTTAATTCCTTTCTTATCATCTGAAGGTCATTTCTGGTGATGATGATTTGCCTACAAGAGACGATATTGGAGAAAGGCGGAGGAGATATGAACTTCAAATGTTGGCAAGAGCTGGAGTTGAGCCAAAGAACGGCACTAGTGTCCTTGAGAGTAACAGTGATGACGACGACAGTGTTTTGAAAGGAAATGGTGAAGTAGACTCTGAAGATGAACTCTACAAGCAAGTCAAACAACAACGTGCTGCGAAACTTGCTGCCGAAGCTGAAACTTACTCCAGGTATGTTTCTATCACCGAAGCTGAAGTTAAATATTGTCTGTTTTAGGTAATCTATGTTTCTGTATCACTATGTCTGACGAACAATCTCTGCAGGACCATGGCAACTCCATCATCTCCCGAAGTGGTGGGTGGAAAACGCAAGATCAGTTATCAAGTAAGTACTTTCTCCCTTACCACCAGCACCTCTTCCGTTCATTCAGCTTGTCACAAATGAATTCATTTACGTTCTCACACTTGATGTTTTCAGATGGAGAAAAACCGAGGCCTAACTCGAAAACGAAAGAAGTTGATAAAGAACCCAAGAAAGAAATACAAGGTACTTGACTTACACTACATGAAATCATCAACCCTTCCACCAGTACAACACATTTCTCCCTCCATTAAACTTTCCACTTACATCTGCCGTATATTTGTGAATGTGAATGGTGCAGCTGAAGTTTCAAGATGCAGCAAAACGTCGTAAAGGTCAGGTCCAGGAGGTTAAAAAGCCGATTCATATGTACGGTGGAGAGACAACAGGAATTAACCCAAGAATCAGTAGGAGCATTCGGTTTAAAAGTTAGAACTGTGGGATTGTACAAGTTTTGTCTTCTTGAGAGTAGTGGGGAATGGGGCAAGGCATTATTCTTCAAGGTATTTCTTTTTCTTAGTAATCAGTTGTCACTTAGCATTATTCTTTATGAGTGTCTTGATCTAACTACTTCAACAGATCTGTTTTGAACTTTAGATGGACCAAAAGGTTGGTCAAGCTGTAAATTTTCTTAAGAAGATGTGTGTCAGAACCAATACCAATTTTATTTTCTTTTTTTGAAAAATGTTCAAACTAATCAAAACGCTTTGTTAATTTTTTTACTT ATGTTGGCAAGAGCTGGAGTTGAGCCAAAGAACGGCACTAGTGTCCTTGAGAGTAACAGTGATGACGACGACAGTGTTTTGAAAGGAAATGGTGAAGTAGACTCTGAAGATGAACTCTACAAGCAAGTCAAACAACAACGTGCTGCGAAACTTGCTGCCGAAGCTGAAACTTACTCCAGGACCATGGCAACTCCATCATCTCCCGAAGTGGTGGGTGGAAAACGCAAGATCAGTTATCAAATGGAGAAAAACCGAGGCCTAACTCGAAAACGAAAGAAGTTGATAAAGAACCCAAGAAAGAAATACAAGCTGAAGTTTCAAGATGCAGCAAAACGTCGTAAAGGTCAGGTCCAGGAGGTTAAAAAGCCGATTCATATGTACGGTGGAGAGACAACAGGAATTAACCCAAGAATCAGTAGGAGCATTCGGTTTAAAAGTTAG MLARAGVEPKNGTSVLESNSDDDDSVLKGNGEVDSEDELYKQVKQQRAAKLAAEAETYSRTMATPSSPEVVGGKRKISYQMEKNRGLTRKRKKLIKNPRKKYKLKFQDAAKRRKGQVQEVKKPIHMYGGETTGINPRISRSIRFKS Homology
BLAST of Cucsat.G6275.T9 vs. ExPASy Swiss-Prot
Match: Q9JI13 (Something about silencing protein 10 OS=Mus musculus OX=10090 GN=Utp3 PE=1 SV=1) HSP 1 Score: 69.3 bits (168), Expect = 4.0e-11 Identity = 47/130 (36.15%), Postives = 72/130 (55.38%), Query Frame = 0
BLAST of Cucsat.G6275.T9 vs. ExPASy Swiss-Prot
Match: Q9NQZ2 (Something about silencing protein 10 OS=Homo sapiens OX=9606 GN=UTP3 PE=1 SV=1) HSP 1 Score: 67.0 bits (162), Expect = 2.0e-10 Identity = 45/133 (33.83%), Postives = 74/133 (55.64%), Query Frame = 0
BLAST of Cucsat.G6275.T9 vs. ExPASy Swiss-Prot
Match: Q6AXX4 (Something about silencing protein 10 OS=Rattus norvegicus OX=10116 GN=Utp3 PE=1 SV=1) HSP 1 Score: 66.6 bits (161), Expect = 2.6e-10 Identity = 45/130 (34.62%), Postives = 73/130 (56.15%), Query Frame = 0
BLAST of Cucsat.G6275.T9 vs. ExPASy Swiss-Prot
Match: Q9I7W5 (Something about silencing protein 10 OS=Drosophila melanogaster OX=7227 GN=Sas10 PE=1 SV=2) HSP 1 Score: 64.7 bits (156), Expect = 9.9e-10 Identity = 46/128 (35.94%), Postives = 74/128 (57.81%), Query Frame = 0
BLAST of Cucsat.G6275.T9 vs. ExPASy Swiss-Prot
Match: Q12136 (Something about silencing protein 10 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=SAS10 PE=1 SV=1) HSP 1 Score: 53.9 bits (128), Expect = 1.8e-06 Identity = 44/153 (28.76%), Postives = 77/153 (50.33%), Query Frame = 0
BLAST of Cucsat.G6275.T9 vs. NCBI nr
Match: XP_011656742.1 (something about silencing protein 10 isoform X4 [Cucumis sativus]) HSP 1 Score: 271 bits (693), Expect = 6.81e-85 Identity = 146/146 (100.00%), Postives = 146/146 (100.00%), Query Frame = 0
BLAST of Cucsat.G6275.T9 vs. NCBI nr
Match: XP_011656741.1 (something about silencing protein 10 isoform X3 [Cucumis sativus] >KAE8646730.1 hypothetical protein Csa_005136 [Cucumis sativus]) HSP 1 Score: 271 bits (693), Expect = 7.12e-85 Identity = 146/146 (100.00%), Postives = 146/146 (100.00%), Query Frame = 0
BLAST of Cucsat.G6275.T9 vs. NCBI nr
Match: XP_011656740.1 (something about silencing protein 10 isoform X2 [Cucumis sativus]) HSP 1 Score: 271 bits (693), Expect = 7.95e-85 Identity = 146/146 (100.00%), Postives = 146/146 (100.00%), Query Frame = 0
BLAST of Cucsat.G6275.T9 vs. NCBI nr
Match: XP_011656738.1 (something about silencing protein 10 isoform X1 [Cucumis sativus]) HSP 1 Score: 271 bits (693), Expect = 8.31e-85 Identity = 146/146 (100.00%), Postives = 146/146 (100.00%), Query Frame = 0
BLAST of Cucsat.G6275.T9 vs. NCBI nr
Match: XP_008460015.1 (PREDICTED: something about silencing protein 10 isoform X2 [Cucumis melo]) HSP 1 Score: 254 bits (650), Expect = 1.77e-78 Identity = 137/146 (93.84%), Postives = 140/146 (95.89%), Query Frame = 0
BLAST of Cucsat.G6275.T9 vs. ExPASy TrEMBL
Match: A0A0A0KD76 (Sas10 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G087170 PE=3 SV=1) HSP 1 Score: 271 bits (693), Expect = 1.87e-85 Identity = 146/146 (100.00%), Postives = 146/146 (100.00%), Query Frame = 0
BLAST of Cucsat.G6275.T9 vs. ExPASy TrEMBL
Match: A0A1S3CBM7 (something about silencing protein 10 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103498957 PE=3 SV=1) HSP 1 Score: 254 bits (650), Expect = 8.58e-79 Identity = 137/146 (93.84%), Postives = 140/146 (95.89%), Query Frame = 0
BLAST of Cucsat.G6275.T9 vs. ExPASy TrEMBL
Match: A0A1S3CCS3 (something about silencing protein 10 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103498957 PE=3 SV=1) HSP 1 Score: 254 bits (650), Expect = 8.76e-79 Identity = 137/146 (93.84%), Postives = 140/146 (95.89%), Query Frame = 0
BLAST of Cucsat.G6275.T9 vs. ExPASy TrEMBL
Match: A0A5A7TE39 (Something about silencing protein 10 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold122G002010 PE=3 SV=1) HSP 1 Score: 253 bits (646), Expect = 1.82e-78 Identity = 137/146 (93.84%), Postives = 140/146 (95.89%), Query Frame = 0
BLAST of Cucsat.G6275.T9 vs. ExPASy TrEMBL
Match: A0A5D3DMP9 (Something about silencing protein 10 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold266G001240 PE=3 SV=1) HSP 1 Score: 253 bits (646), Expect = 6.64e-78 Identity = 137/146 (93.84%), Postives = 140/146 (95.89%), Query Frame = 0
BLAST of Cucsat.G6275.T9 vs. TAIR 10
Match: AT2G43650.1 (Sas10/U3 ribonucleoprotein (Utp) family protein ) HSP 1 Score: 116.3 bits (290), Expect = 2.0e-26 Identity = 77/152 (50.66%), Postives = 97/152 (63.82%), Query Frame = 0
BLAST of Cucsat.G6275.T9 vs. TAIR 10
Match: AT3G28230.1 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: gene silencing; LOCATED IN: nucleus; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Something about silencing protein 10 (Sas10), C-terminal (InterPro:IPR018972); BEST Arabidopsis thaliana protein match is: Sas10/U3 ribonucleoprotein (Utp) family protein (TAIR:AT2G43650.1); Has 374 Blast hits to 360 proteins in 175 species: Archae - 0; Bacteria - 4; Metazoa - 107; Fungi - 115; Plants - 56; Viruses - 0; Other Eukaryotes - 92 (source: NCBI BLink). ) HSP 1 Score: 113.6 bits (283), Expect = 1.3e-25 Identity = 75/147 (51.02%), Postives = 95/147 (64.63%), Query Frame = 0
BLAST of Cucsat.G6275.T9 vs. TAIR 10
Match: AT3G28230.2 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: gene silencing; LOCATED IN: nucleus; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Something about silencing protein 10 (Sas10), C-terminal (InterPro:IPR018972); BEST Arabidopsis thaliana protein match is: Sas10/U3 ribonucleoprotein (Utp) family protein (TAIR:AT2G43650.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). ) HSP 1 Score: 113.6 bits (283), Expect = 1.3e-25 Identity = 75/147 (51.02%), Postives = 95/147 (64.63%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucumber (B10) v3
Date Performed: 2021-10-25
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
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