Cucsat.G5860.T14 (mRNA) Cucumber (B10) v3

Overview
NameCucsat.G5860.T14
TypemRNA
OrganismCucumis sativus L. var. sativus cv B10 (Cucumber (B10) v3)
DescriptionGATA type zinc finger transcription factor family protein
Locationctg1402: 1069650 .. 1072432 (-)
RNA-Seq ExpressionCucsat.G5860.T14
SyntenyCucsat.G5860.T14
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
TGGTAACAGCTATAACTCAGTGGTTGAAGAAGCCAAAATTAATGGTGGGTCACAATTCTTTCTTGCCAACCTGATCTTTATCTTCTTTTCTGTTCTTCCTTTTTAATTATTTCTTCTAATGCGTTGTAATCAGATTACATTAATCAATAAAAATCTTTCTTTAATTTTTCTCTTTATTATTAATCCCAAATTCGAACATAAAACTCCCACTACGCTGCGCCAAAAAGGGGGTCCAATCCAATCCCTTTACTTGTTTTTCTCTTCTTCCCTCGATCTTTCTTCCTTTCTCCTCTCGACCCTTTCCCCACCTTCGATTTCTCCCACGAATTCGCTTCTGGGTTCTTTGTTTTGGCCCTTTTCGTTTACAGATCCACCGTTTTTCCAAGTTCTTATCTCAGGTTTGTGATTTTAACTCCGTTTTGTTTCACATTTCCAGCTCCCAACTCCCAAGATCACGATTGATTTCTCGTCTTTAAGATCTTTGTTGTTAAACAGTGTTGGTTCTGGGTGCGTTTATTGGCTTCAGGTTCATGTTTGTTTTGTTGGAATATCATGATCTAATCTTGAATGGGATCGGGAGTTTAAGTTAATCTCTCTCTGGTGGATTTTTTATTATTATTATATTTTTTTTTTTTGCATTTTCTTCTTCATGAAACAGAAGTTGATTTGAAGGGTATCTGTGTTTAGTTTGATTAATGTAGTTTTTTTATGATTGTGATCTAACAAAACAGAGAAAGGAACTTAGGTTTGAGAGTTGGGGATTGCTTGTCATCTTGATTGGTTGGGTGAAAAAGGGTCAGATCTAATTCCAAGGGCTTAGCTATGTCTTTCATTGGCACACAACAAAAGTGCAAGGCCTGTGAGAAGACTGTCTACCCTGTAGAGCAGCTCTCTGCTGATGGAGTTTCCTACCATAAATCTTGCTTCAAATGCAGCCACTGCAAAGGGACCCTAAAGGTATTGCTTTGTATGTTTTGAGTTGGATTCTCATCTTTGAACCAAAGGGTTAAGATATATTTATTCTTTTGTATGTGTTTTAGAAACTCTGATAGCTATACCATGTTAATTGACAACTAAATTTATAAGTTTAAGTTTATTGGTTATAATGCATATAGATATTCTTATACACGTATTCTTGATATGCTTTCTGCTCTTGCCAAACTAATTTTTAAAGGATATTTGATTGTGGTATTAACCTCTGCCTCAAGTATATCTATCACAACCTACATATCAAATGTTCCCAAGTATAGTTTAACTGTTCAAAGGAGGTAAAATATTAAATACAATAACTCCTGATCTTGATTTGAACAATAGCAAGAGATTTTCTACAAGGATTGGATGGTGGTTTTTATTTTAAAGATGGAACTTTATCTTACTGTTTATAACACTGGCCTCTGCTTGCCTTCAGCTGAGCAATTATTCTTCAATGGAAGGTGTTCTGTATTGTAAGCCTCATTTTGAGCAGCTCTTCAAAGAGACTGGCAATTTCAACAAAAATTTCCAATCACGTACGTTTTGATCTTCTTTCAGTTAGATTTATGTTTCACTTCGCAAAAATTTTGCTTTCACATGTTTAATTGTTTTTGAGTGTTATTTTCAACAGCTGCCAAGTCAGCTGAGAAGTTAACCCCAGAGCTGGTAATTTCCTGTTGTAATCAATTGTAATTTGATATTTGGGAGCTCTCTCCAAGTAGATAAAATTATGCTGTGTATTGCCTCTGATTCTTGTAACCACTAACATGTTGCAGACTAGGTCACCTAGCAAAGCTGCTGGCATGTTTTCTGGTACTCAAGACAAATGTGCTACTTGTGGCAAAACTGTCTATCCATTAGAGAAGGTAAACCACCTACTGAGATCTTGACAAATAATTCATTGTCCCCTTCTTCCCCTTCAACAAAAGGAAGAGGGAACATCTGTTGGAGCAGACTAATTAGTTGGGTTCAATGTTAAAAATATTTATAAGTTTTGCTATAAAGCTGTGATACAAAATTTGAACAGTGTCATTTGGGATCAGTGAATATTCTTAGTTGCATACATTCAAATATTCATCTCATATTACTTTCAGAAAAAACAGTAGATAGTTTTATAGAGGATTATATGAATTTGTTATTAAAAATACTTGCAGGTAACGGTTGAAAGCCAATCCTATCACAAGTCCTGTTTTAAGTGCTCTCATGGAGGGTGTGCTTTATCCCCATCAAACTATGCAGCATTAGAGGGTATTCTATATTGCAAACACCACTTCTCTCAGCTTTTCAAGGAAAAGGGAAGCTACAACCACCTGATCAAGTCTGCATCCATGAAGCGCTCCGCTGCCCCGGTTCCTGAAGCTTAAAGTTCCAATTCTTATATCATCATCATCATTCACGGTTTCGGACTTAACTCTCTATTTTACATGAATGTGTTTAACTTAAATTTTTATGGTATTGAGATGGGAAAGAAGGGTAAAGGAAAAATATATATGTTTACCATCATTTCGGCTCATGTGTTTATTTGGGCAAACTGTTGAATTTGATCGATATTTGAGGTGCAAACCTTATATATTGTTTTCAGGACTTGCATATTTGCATGTTTTGAGCATTATGCATTGTGTTTCCGTGCACGAAAAAGTATTTATGGCGAGAATAGGAACTCTCTTGATCTTGCTGTAAGGTTTTTTTTTCATCCTGTAGCCCAAAAAGCTGCATATTGAGTACCCAACAAAAAGAGATTTCTCTTCTAATGGACACCATAAGGTGGGATGAAACATATTCTGGAATGATTTTTTCGGCAATGTGATATT

Coding sequence (CDS)

ATGTCTTTCATTGGCACACAACAAAAGTGCAAGGCCTGTGAGAAGACTGTCTACCCTGTAGAGCAGCTCTCTGCTGATGGAGTTTCCTACCATAAATCTTGCTTCAAATGCAGCCACTGCAAAGGGACCCTAAAGCTGAGCAATTATTCTTCAATGGAAGGTGTTCTGTATTGTAAGCCTCATTTTGAGCAGCTCTTCAAAGAGACTGGCAATTTCAACAAAAATTTCCAATCACCTGCCAAGTCAGCTGAGAAGTTAACCCCAGAGCTGACTAGGTCACCTAGCAAAGCTGCTGGCATGTTTTCTGGTACTCAAGACAAATGTGCTACTTGTGGCAAAACTGTCTATCCATTAGAGAAGGTAAACCACCTACTGAGATCTTGA

Protein sequence

MSFIGTQQKCKACEKTVYPVEQLSADGVSYHKSCFKCSHCKGTLKLSNYSSMEGVLYCKPHFEQLFKETGNFNKNFQSPAKSAEKLTPELTRSPSKAAGMFSGTQDKCATCGKTVYPLEKVNHLLRS
Homology
[Close]
BLAST of Cucsat.G5860.T14 vs. ExPASy Swiss-Prot
Match: Q9M047 (LIM domain-containing protein WLIM2b OS=Arabidopsis thaliana OX=3702 GN=WLIM2B PE=1 SV=1)

HSP 1 Score: 220.3 bits (560), Expect = 1.2e-56
Identity = 101/121 (83.47%), Postives = 111/121 (91.74%), Query Frame = 0 

Query: 1   MSFIGTQQKCKACEKTVYPVEQLSADGVSYHKSCFKCSHCKGTLKLSNYSSMEGVLYCKP 60
           MSF GTQQKCKACEKTVY VE LSADGV YHKSCFKC+HCK  L+LS+YSSMEGVLYCKP
Sbjct: 1   MSFTGTQQKCKACEKTVYAVELLSADGVGYHKSCFKCTHCKSRLQLSSYSSMEGVLYCKP 60

Query: 61  HFEQLFKETGNFNKNFQSPAKSAEKLTPELTRSPSKAAGMFSGTQDKCATCGKTVYPLEK 120
           HFEQLFKE+G+FNKNFQSPAKSA+K TPELTR+PS+ AG FSGTQ+KCATC KTVYP+EK
Sbjct: 61  HFEQLFKESGSFNKNFQSPAKSADKSTPELTRTPSRVAGRFSGTQEKCATCSKTVYPIEK 120

Query: 121 V 122
           V
Sbjct: 121 V 121

[Close]
BLAST of Cucsat.G5860.T14 vs. ExPASy Swiss-Prot
Match: O04193 (LIM domain-containing protein WLIM2a OS=Arabidopsis thaliana OX=3702 GN=WLIN2A PE=1 SV=1)

HSP 1 Score: 213.4 bits (542), Expect = 1.5e-54
Identity = 98/122 (80.33%), Postives = 111/122 (90.98%), Query Frame = 0 

Query: 1   MSFIGTQQKCKACEKTVYPVEQLSADGVSYHKSCFKCSHCKGTLKLSNYSSMEGVLYCKP 60
           MSF GTQQKC+ACEKTVYPVE LSADG+SYHK+CFKCSHCK  L+LSNYSSMEGV+YC+P
Sbjct: 1   MSFTGTQQKCRACEKTVYPVELLSADGISYHKACFKCSHCKSRLQLSNYSSMEGVVYCRP 60

Query: 61  HFEQLFKETGNFNKNFQSPAKS-AEKLTPELTRSPSKAAGMFSGTQDKCATCGKTVYPLE 120
           HFEQLFKE+G+F+KNFQSPAK   +K TPEL R+PS+ AGMFSGTQDKCATC KTVYP+E
Sbjct: 61  HFEQLFKESGSFSKNFQSPAKPLTDKPTPELNRTPSRLAGMFSGTQDKCATCTKTVYPIE 120

Query: 121 KV 122
           KV
Sbjct: 121 KV 122

[Close]
BLAST of Cucsat.G5860.T14 vs. ExPASy Swiss-Prot
Match: O80839 (LIM domain-containing protein PLIM2a OS=Arabidopsis thaliana OX=3702 GN=PLIM2A PE=1 SV=1)

HSP 1 Score: 184.5 bits (467), Expect = 7.5e-46
Identity = 85/121 (70.25%), Postives = 100/121 (82.64%), Query Frame = 0 

Query: 1   MSFIGTQQKCKACEKTVYPVEQLSADGVSYHKSCFKCSHCKGTLKLSNYSSMEGVLYCKP 60
           MSF GT  KCKAC+KTVY ++ L+ +G +YHKSCF+C+HCKGTL +SNYSSM+GVLYCKP
Sbjct: 1   MSFTGTLDKCKACDKTVYVMDLLTLEGNTYHKSCFRCTHCKGTLVISNYSSMDGVLYCKP 60

Query: 61  HFEQLFKETGNFNKNFQSPAKSAEKLTPELTRSPSKAAGMFSGTQDKCATCGKTVYPLEK 120
           HFEQLFKE+GN++KNFQ  A   EK    LTR+PSK +  FSGTQDKCATC KTVYPLEK
Sbjct: 61  HFEQLFKESGNYSKNFQ--AGKTEKPNDHLTRTPSKLSSFFSGTQDKCATCKKTVYPLEK 119

Query: 121 V 122
           V
Sbjct: 121 V 119

[Close]
BLAST of Cucsat.G5860.T14 vs. ExPASy Swiss-Prot
Match: Q1ECF5 (LIM domain-containing protein PLIM2b OS=Arabidopsis thaliana OX=3702 GN=PLIM2B PE=1 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 4.9e-45
Identity = 83/121 (68.60%), Postives = 100/121 (82.64%), Query Frame = 0 

Query: 1   MSFIGTQQKCKACEKTVYPVEQLSADGVSYHKSCFKCSHCKGTLKLSNYSSMEGVLYCKP 60
           MSF GT  KC  C+KTVY V+ LS +G+ YHKSCF+C+HCKGTL++SNYSSM+GVLYCK 
Sbjct: 1   MSFTGTLDKCNVCDKTVYVVDMLSIEGMPYHKSCFRCTHCKGTLQMSNYSSMDGVLYCKT 60

Query: 61  HFEQLFKETGNFNKNFQSPAKSAEKLTPELTRSPSKAAGMFSGTQDKCATCGKTVYPLEK 120
           HFEQLFKE+GNF+KNFQ P K+ +   PELTR+PSK + +F GTQDKCA C KTVYPLEK
Sbjct: 61  HFEQLFKESGNFSKNFQ-PGKTEK---PELTRTPSKISSIFCGTQDKCAACEKTVYPLEK 117

Query: 121 V 122
           +
Sbjct: 121 I 117

[Close]
BLAST of Cucsat.G5860.T14 vs. ExPASy Swiss-Prot
Match: Q7F9R9 (LIM domain-containing protein PLIM2b OS=Oryza sativa subsp. japonica OX=39947 GN=PLIM2B PE=1 SV=1)

HSP 1 Score: 173.3 bits (438), Expect = 1.7e-42
Identity = 80/121 (66.12%), Postives = 95/121 (78.51%), Query Frame = 0 

Query: 1   MSFIGTQQKCKACEKTVYPVEQLSADGVSYHKSCFKCSHCKGTLKLSNYSSMEGVLYCKP 60
           MSF GTQ KC AC+KTV+ ++ L+ADGV YHK+CFKCSHCKG L + +YSSM+GVLYCK 
Sbjct: 1   MSFTGTQDKCTACDKTVHFIDLLTADGVPYHKTCFKCSHCKGILSMCSYSSMDGVLYCKT 60

Query: 61  HFEQLFKETGNFNKNFQSPAKSAEKLTPELTRSPSKAAGMFSGTQDKCATCGKTVYPLEK 120
           HFEQLFKETG+F+K F    +S +K   EL R+PSK    FSGTQDKCA C KTVYPLEK
Sbjct: 61  HFEQLFKETGSFSKKFAPGCRSTDK---ELARAPSKICSAFSGTQDKCAACQKTVYPLEK 118

Query: 121 V 122
           +
Sbjct: 121 L 118

[Close]
BLAST of Cucsat.G5860.T14 vs. NCBI nr
Match: XP_004138434.1 (LIM domain-containing protein WLIM2b [Cucumis sativus] >XP_008441430.1 PREDICTED: LIM domain-containing protein WLIM2b [Cucumis melo] >XP_008441431.1 PREDICTED: LIM domain-containing protein WLIM2b [Cucumis melo] >XP_011656401.1 LIM domain-containing protein WLIM2b [Cucumis sativus] >KGN45769.1 hypothetical protein Csa_005194 [Cucumis sativus])

HSP 1 Score: 257 bits (656), Expect = 2.26e-85
Identity = 121/121 (100.00%), Postives = 121/121 (100.00%), Query Frame = 0 

Query: 1   MSFIGTQQKCKACEKTVYPVEQLSADGVSYHKSCFKCSHCKGTLKLSNYSSMEGVLYCKP 60
           MSFIGTQQKCKACEKTVYPVEQLSADGVSYHKSCFKCSHCKGTLKLSNYSSMEGVLYCKP
Sbjct: 1   MSFIGTQQKCKACEKTVYPVEQLSADGVSYHKSCFKCSHCKGTLKLSNYSSMEGVLYCKP 60

Query: 61  HFEQLFKETGNFNKNFQSPAKSAEKLTPELTRSPSKAAGMFSGTQDKCATCGKTVYPLEK 120
           HFEQLFKETGNFNKNFQSPAKSAEKLTPELTRSPSKAAGMFSGTQDKCATCGKTVYPLEK
Sbjct: 61  HFEQLFKETGNFNKNFQSPAKSAEKLTPELTRSPSKAAGMFSGTQDKCATCGKTVYPLEK 120

[Close]
BLAST of Cucsat.G5860.T14 vs. NCBI nr
Match: XP_038884117.1 (LIM domain-containing protein WLIM2b [Benincasa hispida] >XP_038884118.1 LIM domain-containing protein WLIM2b [Benincasa hispida])

HSP 1 Score: 254 bits (650), Expect = 1.86e-84
Identity = 119/121 (98.35%), Postives = 120/121 (99.17%), Query Frame = 0 

Query: 1   MSFIGTQQKCKACEKTVYPVEQLSADGVSYHKSCFKCSHCKGTLKLSNYSSMEGVLYCKP 60
           MSF GTQQKCKACEKTVYPVEQLSADG+SYHKSCFKCSHCKGTLKLSNYSSMEGVLYCKP
Sbjct: 1   MSFTGTQQKCKACEKTVYPVEQLSADGISYHKSCFKCSHCKGTLKLSNYSSMEGVLYCKP 60

Query: 61  HFEQLFKETGNFNKNFQSPAKSAEKLTPELTRSPSKAAGMFSGTQDKCATCGKTVYPLEK 120
           HFEQLFKETGNFNKNFQSPAKSAEKLTPELTRSPSKAAGMFSGTQDKCATCGKTVYPLEK
Sbjct: 61  HFEQLFKETGNFNKNFQSPAKSAEKLTPELTRSPSKAAGMFSGTQDKCATCGKTVYPLEK 120

[Close]
BLAST of Cucsat.G5860.T14 vs. NCBI nr
Match: XP_022939310.1 (LIM domain-containing protein WLIM2b [Cucurbita moschata] >XP_022939311.1 LIM domain-containing protein WLIM2b [Cucurbita moschata] >XP_022939312.1 LIM domain-containing protein WLIM2b [Cucurbita moschata] >XP_022993072.1 LIM domain-containing protein WLIM2b [Cucurbita maxima] >XP_022993073.1 LIM domain-containing protein WLIM2b [Cucurbita maxima] >KAG7015999.1 LIM domain-containing protein WLIM2b [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 254 bits (648), Expect = 3.74e-84
Identity = 119/121 (98.35%), Postives = 120/121 (99.17%), Query Frame = 0 

Query: 1   MSFIGTQQKCKACEKTVYPVEQLSADGVSYHKSCFKCSHCKGTLKLSNYSSMEGVLYCKP 60
           MSFIGTQQKCKACEKTVYPVEQLS DGVSYHKSCFKCSHCKGTLKLSNYSSMEGVLYCKP
Sbjct: 1   MSFIGTQQKCKACEKTVYPVEQLSVDGVSYHKSCFKCSHCKGTLKLSNYSSMEGVLYCKP 60

Query: 61  HFEQLFKETGNFNKNFQSPAKSAEKLTPELTRSPSKAAGMFSGTQDKCATCGKTVYPLEK 120
           HFEQLFKE+GNFNKNFQSPAKSAEKLTPELTRSPSKAAGMFSGTQDKCATCGKTVYPLEK
Sbjct: 61  HFEQLFKESGNFNKNFQSPAKSAEKLTPELTRSPSKAAGMFSGTQDKCATCGKTVYPLEK 120

[Close]
BLAST of Cucsat.G5860.T14 vs. NCBI nr
Match: KAG6578438.1 (LIM domain-containing protein WLIM2b, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 253 bits (645), Expect = 1.07e-83
Identity = 118/121 (97.52%), Postives = 120/121 (99.17%), Query Frame = 0 

Query: 1   MSFIGTQQKCKACEKTVYPVEQLSADGVSYHKSCFKCSHCKGTLKLSNYSSMEGVLYCKP 60
           MSFIGTQQKCK+CEKTVYPVEQLS DGVSYHKSCFKCSHCKGTLKLSNYSSMEGVLYCKP
Sbjct: 1   MSFIGTQQKCKSCEKTVYPVEQLSVDGVSYHKSCFKCSHCKGTLKLSNYSSMEGVLYCKP 60

Query: 61  HFEQLFKETGNFNKNFQSPAKSAEKLTPELTRSPSKAAGMFSGTQDKCATCGKTVYPLEK 120
           HFEQLFKE+GNFNKNFQSPAKSAEKLTPELTRSPSKAAGMFSGTQDKCATCGKTVYPLEK
Sbjct: 61  HFEQLFKESGNFNKNFQSPAKSAEKLTPELTRSPSKAAGMFSGTQDKCATCGKTVYPLEK 120

[Close]
BLAST of Cucsat.G5860.T14 vs. NCBI nr
Match: XP_023550254.1 (LIM domain-containing protein WLIM2b [Cucurbita pepo subsp. pepo])

HSP 1 Score: 253 bits (645), Expect = 1.07e-83
Identity = 118/121 (97.52%), Postives = 120/121 (99.17%), Query Frame = 0 

Query: 1   MSFIGTQQKCKACEKTVYPVEQLSADGVSYHKSCFKCSHCKGTLKLSNYSSMEGVLYCKP 60
           MSFIGTQQKCKACEKTVYPVEQLS DGVSYHKSCFKC+HCKGTLKLSNYSSMEGVLYCKP
Sbjct: 1   MSFIGTQQKCKACEKTVYPVEQLSVDGVSYHKSCFKCTHCKGTLKLSNYSSMEGVLYCKP 60

Query: 61  HFEQLFKETGNFNKNFQSPAKSAEKLTPELTRSPSKAAGMFSGTQDKCATCGKTVYPLEK 120
           HFEQLFKE+GNFNKNFQSPAKSAEKLTPELTRSPSKAAGMFSGTQDKCATCGKTVYPLEK
Sbjct: 61  HFEQLFKESGNFNKNFQSPAKSAEKLTPELTRSPSKAAGMFSGTQDKCATCGKTVYPLEK 120

[Close]
BLAST of Cucsat.G5860.T14 vs. ExPASy TrEMBL
Match: A0A1S3B3E4 (LIM domain-containing protein WLIM2b OS=Cucumis melo OX=3656 GN=LOC103485550 PE=4 SV=1)

HSP 1 Score: 257 bits (656), Expect = 1.09e-85
Identity = 121/121 (100.00%), Postives = 121/121 (100.00%), Query Frame = 0 

Query: 1   MSFIGTQQKCKACEKTVYPVEQLSADGVSYHKSCFKCSHCKGTLKLSNYSSMEGVLYCKP 60
           MSFIGTQQKCKACEKTVYPVEQLSADGVSYHKSCFKCSHCKGTLKLSNYSSMEGVLYCKP
Sbjct: 1   MSFIGTQQKCKACEKTVYPVEQLSADGVSYHKSCFKCSHCKGTLKLSNYSSMEGVLYCKP 60

Query: 61  HFEQLFKETGNFNKNFQSPAKSAEKLTPELTRSPSKAAGMFSGTQDKCATCGKTVYPLEK 120
           HFEQLFKETGNFNKNFQSPAKSAEKLTPELTRSPSKAAGMFSGTQDKCATCGKTVYPLEK
Sbjct: 61  HFEQLFKETGNFNKNFQSPAKSAEKLTPELTRSPSKAAGMFSGTQDKCATCGKTVYPLEK 120

[Close]
BLAST of Cucsat.G5860.T14 vs. ExPASy TrEMBL
Match: A0A0A0KAA4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G009480 PE=4 SV=1)

HSP 1 Score: 257 bits (656), Expect = 1.09e-85
Identity = 121/121 (100.00%), Postives = 121/121 (100.00%), Query Frame = 0 

Query: 1   MSFIGTQQKCKACEKTVYPVEQLSADGVSYHKSCFKCSHCKGTLKLSNYSSMEGVLYCKP 60
           MSFIGTQQKCKACEKTVYPVEQLSADGVSYHKSCFKCSHCKGTLKLSNYSSMEGVLYCKP
Sbjct: 1   MSFIGTQQKCKACEKTVYPVEQLSADGVSYHKSCFKCSHCKGTLKLSNYSSMEGVLYCKP 60

Query: 61  HFEQLFKETGNFNKNFQSPAKSAEKLTPELTRSPSKAAGMFSGTQDKCATCGKTVYPLEK 120
           HFEQLFKETGNFNKNFQSPAKSAEKLTPELTRSPSKAAGMFSGTQDKCATCGKTVYPLEK
Sbjct: 61  HFEQLFKETGNFNKNFQSPAKSAEKLTPELTRSPSKAAGMFSGTQDKCATCGKTVYPLEK 120

[Close]
BLAST of Cucsat.G5860.T14 vs. ExPASy TrEMBL
Match: A0A6J1K140 (LIM domain-containing protein WLIM2b OS=Cucurbita maxima OX=3661 GN=LOC111489197 PE=4 SV=1)

HSP 1 Score: 254 bits (648), Expect = 1.81e-84
Identity = 119/121 (98.35%), Postives = 120/121 (99.17%), Query Frame = 0 

Query: 1   MSFIGTQQKCKACEKTVYPVEQLSADGVSYHKSCFKCSHCKGTLKLSNYSSMEGVLYCKP 60
           MSFIGTQQKCKACEKTVYPVEQLS DGVSYHKSCFKCSHCKGTLKLSNYSSMEGVLYCKP
Sbjct: 1   MSFIGTQQKCKACEKTVYPVEQLSVDGVSYHKSCFKCSHCKGTLKLSNYSSMEGVLYCKP 60

Query: 61  HFEQLFKETGNFNKNFQSPAKSAEKLTPELTRSPSKAAGMFSGTQDKCATCGKTVYPLEK 120
           HFEQLFKE+GNFNKNFQSPAKSAEKLTPELTRSPSKAAGMFSGTQDKCATCGKTVYPLEK
Sbjct: 61  HFEQLFKESGNFNKNFQSPAKSAEKLTPELTRSPSKAAGMFSGTQDKCATCGKTVYPLEK 120

[Close]
BLAST of Cucsat.G5860.T14 vs. ExPASy TrEMBL
Match: A0A6J1FFI9 (LIM domain-containing protein WLIM2b OS=Cucurbita moschata OX=3662 GN=LOC111445264 PE=4 SV=1)

HSP 1 Score: 254 bits (648), Expect = 1.81e-84
Identity = 119/121 (98.35%), Postives = 120/121 (99.17%), Query Frame = 0 

Query: 1   MSFIGTQQKCKACEKTVYPVEQLSADGVSYHKSCFKCSHCKGTLKLSNYSSMEGVLYCKP 60
           MSFIGTQQKCKACEKTVYPVEQLS DGVSYHKSCFKCSHCKGTLKLSNYSSMEGVLYCKP
Sbjct: 1   MSFIGTQQKCKACEKTVYPVEQLSVDGVSYHKSCFKCSHCKGTLKLSNYSSMEGVLYCKP 60

Query: 61  HFEQLFKETGNFNKNFQSPAKSAEKLTPELTRSPSKAAGMFSGTQDKCATCGKTVYPLEK 120
           HFEQLFKE+GNFNKNFQSPAKSAEKLTPELTRSPSKAAGMFSGTQDKCATCGKTVYPLEK
Sbjct: 61  HFEQLFKESGNFNKNFQSPAKSAEKLTPELTRSPSKAAGMFSGTQDKCATCGKTVYPLEK 120

[Close]
BLAST of Cucsat.G5860.T14 vs. ExPASy TrEMBL
Match: A0A5N5F4V6 (Pollen-specific protein SF3-like OS=Pyrus ussuriensis x Pyrus communis OX=2448454 GN=D8674_031670 PE=4 SV=1)

HSP 1 Score: 250 bits (639), Expect = 5.96e-83
Identity = 116/121 (95.87%), Postives = 119/121 (98.35%), Query Frame = 0 

Query: 1   MSFIGTQQKCKACEKTVYPVEQLSADGVSYHKSCFKCSHCKGTLKLSNYSSMEGVLYCKP 60
           MSFIGTQQKCKACEKTVYPVE+LSADG+SYHKSCFKC+HCKGTLKLSNYSSMEGVLYCKP
Sbjct: 1   MSFIGTQQKCKACEKTVYPVEELSADGISYHKSCFKCTHCKGTLKLSNYSSMEGVLYCKP 60

Query: 61  HFEQLFKETGNFNKNFQSPAKSAEKLTPELTRSPSKAAGMFSGTQDKCATCGKTVYPLEK 120
           HFEQLFKETGNFNKNFQSPAKSAEKLTPELTRSPSKAA MFSGTQDKCATCGKT YPLEK
Sbjct: 61  HFEQLFKETGNFNKNFQSPAKSAEKLTPELTRSPSKAASMFSGTQDKCATCGKTAYPLEK 120

[Close]
BLAST of Cucsat.G5860.T14 vs. TAIR 10
Match: AT3G55770.7 (GATA type zinc finger transcription factor family protein )

HSP 1 Score: 221.5 bits (563), Expect = 3.9e-58
Identity = 101/125 (80.80%), Postives = 114/125 (91.20%), Query Frame = 0 

Query: 1   MSFIGTQQKCKACEKTVYPVEQLSADGVSYHKSCFKCSHCKGTLKLSNYSSMEGVLYCKP 60
           MSF GTQQKCKACEKTVY VE LSADGV YHKSCFKC+HCK  L+LS+YSSMEGVLYCKP
Sbjct: 1   MSFTGTQQKCKACEKTVYAVELLSADGVGYHKSCFKCTHCKSRLQLSSYSSMEGVLYCKP 60

Query: 61  HFEQLFKETGNFNKNFQSPAKSAEKLTPELTRSPSKAAGMFSGTQDKCATCGKTVYPLEK 120
           HFEQLFKE+G+FNKNFQSPAKSA+K TPELTR+PS+ AG FSGTQ+KCATC KTVYP+EK
Sbjct: 61  HFEQLFKESGSFNKNFQSPAKSADKSTPELTRTPSRVAGRFSGTQEKCATCSKTVYPIEK 120

Query: 121 VNHLL 126
           +++ L
Sbjct: 121 IHNPL 125

[Close]
BLAST of Cucsat.G5860.T14 vs. TAIR 10
Match: AT3G55770.1 (GATA type zinc finger transcription factor family protein )

HSP 1 Score: 220.3 bits (560), Expect = 8.7e-58
Identity = 101/121 (83.47%), Postives = 111/121 (91.74%), Query Frame = 0 

Query: 1   MSFIGTQQKCKACEKTVYPVEQLSADGVSYHKSCFKCSHCKGTLKLSNYSSMEGVLYCKP 60
           MSF GTQQKCKACEKTVY VE LSADGV YHKSCFKC+HCK  L+LS+YSSMEGVLYCKP
Sbjct: 1   MSFTGTQQKCKACEKTVYAVELLSADGVGYHKSCFKCTHCKSRLQLSSYSSMEGVLYCKP 60

Query: 61  HFEQLFKETGNFNKNFQSPAKSAEKLTPELTRSPSKAAGMFSGTQDKCATCGKTVYPLEK 120
           HFEQLFKE+G+FNKNFQSPAKSA+K TPELTR+PS+ AG FSGTQ+KCATC KTVYP+EK
Sbjct: 61  HFEQLFKESGSFNKNFQSPAKSADKSTPELTRTPSRVAGRFSGTQEKCATCSKTVYPIEK 120

Query: 121 V 122
           V
Sbjct: 121 V 121

[Close]
BLAST of Cucsat.G5860.T14 vs. TAIR 10
Match: AT3G55770.2 (GATA type zinc finger transcription factor family protein )

HSP 1 Score: 220.3 bits (560), Expect = 8.7e-58
Identity = 101/121 (83.47%), Postives = 111/121 (91.74%), Query Frame = 0 

Query: 1   MSFIGTQQKCKACEKTVYPVEQLSADGVSYHKSCFKCSHCKGTLKLSNYSSMEGVLYCKP 60
           MSF GTQQKCKACEKTVY VE LSADGV YHKSCFKC+HCK  L+LS+YSSMEGVLYCKP
Sbjct: 1   MSFTGTQQKCKACEKTVYAVELLSADGVGYHKSCFKCTHCKSRLQLSSYSSMEGVLYCKP 60

Query: 61  HFEQLFKETGNFNKNFQSPAKSAEKLTPELTRSPSKAAGMFSGTQDKCATCGKTVYPLEK 120
           HFEQLFKE+G+FNKNFQSPAKSA+K TPELTR+PS+ AG FSGTQ+KCATC KTVYP+EK
Sbjct: 61  HFEQLFKESGSFNKNFQSPAKSADKSTPELTRTPSRVAGRFSGTQEKCATCSKTVYPIEK 120

Query: 121 V 122
           V
Sbjct: 121 V 121

[Close]
BLAST of Cucsat.G5860.T14 vs. TAIR 10
Match: AT3G55770.3 (GATA type zinc finger transcription factor family protein )

HSP 1 Score: 220.3 bits (560), Expect = 8.7e-58
Identity = 101/121 (83.47%), Postives = 111/121 (91.74%), Query Frame = 0 

Query: 1   MSFIGTQQKCKACEKTVYPVEQLSADGVSYHKSCFKCSHCKGTLKLSNYSSMEGVLYCKP 60
           MSF GTQQKCKACEKTVY VE LSADGV YHKSCFKC+HCK  L+LS+YSSMEGVLYCKP
Sbjct: 1   MSFTGTQQKCKACEKTVYAVELLSADGVGYHKSCFKCTHCKSRLQLSSYSSMEGVLYCKP 60

Query: 61  HFEQLFKETGNFNKNFQSPAKSAEKLTPELTRSPSKAAGMFSGTQDKCATCGKTVYPLEK 120
           HFEQLFKE+G+FNKNFQSPAKSA+K TPELTR+PS+ AG FSGTQ+KCATC KTVYP+EK
Sbjct: 61  HFEQLFKESGSFNKNFQSPAKSADKSTPELTRTPSRVAGRFSGTQEKCATCSKTVYPIEK 120

Query: 121 V 122
           V
Sbjct: 121 V 121

[Close]
BLAST of Cucsat.G5860.T14 vs. TAIR 10
Match: AT3G55770.4 (GATA type zinc finger transcription factor family protein )

HSP 1 Score: 220.3 bits (560), Expect = 8.7e-58
Identity = 101/121 (83.47%), Postives = 111/121 (91.74%), Query Frame = 0 

Query: 1   MSFIGTQQKCKACEKTVYPVEQLSADGVSYHKSCFKCSHCKGTLKLSNYSSMEGVLYCKP 60
           MSF GTQQKCKACEKTVY VE LSADGV YHKSCFKC+HCK  L+LS+YSSMEGVLYCKP
Sbjct: 1   MSFTGTQQKCKACEKTVYAVELLSADGVGYHKSCFKCTHCKSRLQLSSYSSMEGVLYCKP 60

Query: 61  HFEQLFKETGNFNKNFQSPAKSAEKLTPELTRSPSKAAGMFSGTQDKCATCGKTVYPLEK 120
           HFEQLFKE+G+FNKNFQSPAKSA+K TPELTR+PS+ AG FSGTQ+KCATC KTVYP+EK
Sbjct: 61  HFEQLFKESGSFNKNFQSPAKSADKSTPELTRTPSRVAGRFSGTQEKCATCSKTVYPIEK 120

Query: 121 V 122
           V
Sbjct: 121 V 121

The following BLAST results are available for this feature:
BLAST of Cucsat.G5860.T14 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9M0471.2e-5683.47LIM domain-containing protein WLIM2b OS=Arabidopsis thaliana OX=3702 GN=WLIM2B P... [more]
O041931.5e-5480.33LIM domain-containing protein WLIM2a OS=Arabidopsis thaliana OX=3702 GN=WLIN2A P... [more]
O808397.5e-4670.25LIM domain-containing protein PLIM2a OS=Arabidopsis thaliana OX=3702 GN=PLIM2A P... [more]
Q1ECF54.9e-4568.60LIM domain-containing protein PLIM2b OS=Arabidopsis thaliana OX=3702 GN=PLIM2B P... [more]
Q7F9R91.7e-4266.12LIM domain-containing protein PLIM2b OS=Oryza sativa subsp. japonica OX=39947 GN... [more]
BLAST of Cucsat.G5860.T14 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_004138434.12.26e-85100.00LIM domain-containing protein WLIM2b [Cucumis sativus] >XP_008441430.1 PREDICTED... [more]
XP_038884117.11.86e-8498.35LIM domain-containing protein WLIM2b [Benincasa hispida] >XP_038884118.1 LIM dom... [more]
XP_022939310.13.74e-8498.35LIM domain-containing protein WLIM2b [Cucurbita moschata] >XP_022939311.1 LIM do... [more]
KAG6578438.11.07e-8397.52LIM domain-containing protein WLIM2b, partial [Cucurbita argyrosperma subsp. sor... [more]
XP_023550254.11.07e-8397.52LIM domain-containing protein WLIM2b [Cucurbita pepo subsp. pepo][more]
BLAST of Cucsat.G5860.T14 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A1S3B3E41.09e-85100.00LIM domain-containing protein WLIM2b OS=Cucumis melo OX=3656 GN=LOC103485550 PE=... [more]
A0A0A0KAA41.09e-85100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G009480 PE=4 SV=1[more]
A0A6J1K1401.81e-8498.35LIM domain-containing protein WLIM2b OS=Cucurbita maxima OX=3661 GN=LOC111489197... [more]
A0A6J1FFI91.81e-8498.35LIM domain-containing protein WLIM2b OS=Cucurbita moschata OX=3662 GN=LOC1114452... [more]
A0A5N5F4V65.96e-8395.87Pollen-specific protein SF3-like OS=Pyrus ussuriensis x Pyrus communis OX=244845... [more]
BLAST of Cucsat.G5860.T14 vs. TAIR 10
Match NameE-valueIdentityDescription
AT3G55770.73.9e-5880.80GATA type zinc finger transcription factor family protein [more]
AT3G55770.18.7e-5883.47GATA type zinc finger transcription factor family protein [more]
AT3G55770.28.7e-5883.47GATA type zinc finger transcription factor family protein [more]
AT3G55770.38.7e-5883.47GATA type zinc finger transcription factor family protein [more]
AT3G55770.48.7e-5883.47GATA type zinc finger transcription factor family protein [more]
InterPro
Analysis Name: InterPro Annotations of Cucumber (B10) v3
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001781Zinc finger, LIM-typeSMARTSM00132lim_4coord: 9..61
e-value: 8.0E-14
score: 61.9
IPR001781Zinc finger, LIM-typePFAMPF00412LIMcoord: 10..65
e-value: 1.0E-12
score: 48.1
IPR001781Zinc finger, LIM-typePROSITEPS00478LIM_DOMAIN_1coord: 10..44
IPR001781Zinc finger, LIM-typePROSITEPS50023LIM_DOMAIN_2coord: 8..68
score: 13.672
NoneNo IPR availableGENE3D2.10.110.10Cysteine Rich Proteincoord: 4..74
e-value: 1.4E-21
score: 78.4
NoneNo IPR availablePANTHERPTHR24206OS06G0237300 PROTEINcoord: 1..122
NoneNo IPR availablePANTHERPTHR24206:SF94LIM DOMAIN-CONTAINING PROTEIN WLIM2Bcoord: 1..122
NoneNo IPR availableCDDcd09440LIM1_SF3coord: 6..68
e-value: 3.71154E-43
score: 134.129
NoneNo IPR availableSUPERFAMILY57716Glucocorticoid receptor-like (DNA-binding domain)coord: 3..35
NoneNo IPR availableSUPERFAMILY57716Glucocorticoid receptor-like (DNA-binding domain)coord: 36..76

Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Cucsat.G5860Cucsat.G5860gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Cucsat.G5860.T14.E1Cucsat.G5860.T14.E1exon
Cucsat.G5860.T14.E2Cucsat.G5860.T14.E2exon
Cucsat.G5860.T14.E3Cucsat.G5860.T14.E3exon
Cucsat.G5860.T14.E4Cucsat.G5860.T14.E4exon
Cucsat.G5860.T14.E5Cucsat.G5860.T14.E5exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Cucsat.G5860.T14.C4Cucsat.G5860.T14.C4CDS
Cucsat.G5860.T14.C3Cucsat.G5860.T14.C3CDS
Cucsat.G5860.T14.C2Cucsat.G5860.T14.C2CDS
Cucsat.G5860.T14.C1Cucsat.G5860.T14.C1CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Cucsat.G5860.T14Cucsat.G5860.T14-proteinpolypeptide


GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0051017 actin filament bundle assembly
cellular_component GO:0015629 actin cytoskeleton
cellular_component GO:0005886 plasma membrane
molecular_function GO:0051015 actin filament binding
molecular_function GO:0046872 metal ion binding