Cucsat.G5860 (gene) Cucumber (B10) v3

Overview
NameCucsat.G5860
Typegene
OrganismCucumis sativus L. var. sativus cv B10 (Cucumber (B10) v3)
DescriptionGATA type zinc finger transcription factor family protein
Locationctg1402: 1069655 .. 1072596 (-)
RNA-Seq ExpressionCucsat.G5860
SyntenyCucsat.G5860
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
TCTTGCCAACCTGATCTTTATCTTCTTTTCTGTTCTTCCTTTTTAATTATTTCTTCTAATGCGTTGTAATCAGATTACATTAATCAATAAAAATCTTTCTTTAATTTTTCTCTTTATTATTAATCCCAAATTCGAACATAAAACTCCCACTACGCTGCGCCAAAAAGGGGGTCCAATCCAATCCCTTTACTTGTTTTTCTCTTCTTCCCTCGATCTTTCTTCCTTTCTCCTCTCGACCCTTTCCCCACCTTCGATTTCTCCCACGAATTCGCTTCTGGGTTCTTTGTTTTGGCCCTTTTCGTTTACAGATCCACCGTTTTTCCAAGTTCTTATCTCAGGTTTGTGATTTTAACTCCGTTTTGTTTCACATTTCCAGCTCCCAACTCCCAAGATCACGATTGATTTCTCGTCTTTAAGATCTTTGTTGTTAAACAGTGTTGGTTCTGGGTGCGTTTATTGGCTTCAGGTTCATGTTTGTTTTGTTGGAATATCATGATCTAATCTTGAATGGGATCGGGAGTTTAAGTTAATCTCTCTCTGGTGGATTTTTTATTATTATTATATTTTTTTTTTTTGCATTTTCTTCTTCATGAAACAGAAGTTGATTTGAAGGGTATCTGTGTTTAGTTTGATTAATGTAGTTTTTTTATGATTGTGATCTAACAAAACAGAGAAAGGAACTTAGGTTTGAGAGTTGGGGATTGCTTGTCATCTTGATTGGTTGGGTGAAAAAGGGTCAGATCTAATTCCAAGGGCTTAGCTATGTCTTTCATTGGCACACAACAAAAGTGCAAGGCCTGTGAGAAGACTGTCTACCCTGTAGAGCAGCTCTCTGCTGATGGAGTTTCCTACCATAAATCTTGCTTCAAATGCAGCCACTGCAAAGGGACCCTAAAGGTATTGCTTTGTATGTTTTGAGTTGGATTCTCATCTTTGAACCAAAGGGTTAAGATATATTTATTCTTTTGTATGTGTTTTAGAAACTCTGATAGCTATACCATGTTAATTGACAACTAAATTTATAAGTTTAAGTTTATTGGTTATAATGCATATAGATATTCTTATACACGTATTCTTGATATGCTTTCTGCTCTTGCCAAACTAATTTTTAAAGGATATTTGATTGTGGTATTAACCTCTGCCTCAAGTATATCTATCACAACCTACATATCAAATGTTCCCAAGTATAGTTTAACTGTTCAAAGGAGGTAAAATATTAAATACAATAACTCCTGATCTTGATTTGAACAATAGCAAGAGATTTTCTACAAGGATTGGATGGTGGTTTTTATTTTAAAGATGGAACTTTATCTTACTGTTTATAACACTGGCCTCTGCTTGCCTTCAGCTGAGCAATTATTCTTCAATGGAAGGTGTTCTGTATTGTAAGCCTCATTTTGAGCAGCTCTTCAAAGAGACTGGCAATTTCAACAAAAATTTCCAATCACGTACGTTTTGATCTTCTTTCAGTTAGATTTATGTTTCACTTCGCAAAAATTTTGCTTTCACATGTTTAATTGTTTTTGAGTGTTATTTTCAACAGCTGCCAAGTCAGCTGAGAAGTTAACCCCAGAGCTGGTAATTTCCTGTTGTAATCAATTGTAATTTGATATTTGGGAGCTCTCTCCAAGTAGATAAAATTATGCTGTGTATTGCCTCTGATTCTTGTAACCACTAACATGTTGCAGACTAGGTCACCTAGCAAAGCTGCTGGCATGTTTTCTGGTACTCAAGACAAATGTGCTACTTGTGGCAAAACTGTCTATCCATTAGAGAAGGTAAACCACCTACTGAGATCTTGACAAATAATTCATTGTCCCCTTCTTCCCCTTCAACAAAAGGAAGAGGGAACATCTGTTGGAGCAGACTAATTAGTTGGGTTCAATGTTAAAAATATTTATAAGTTTTGCTATAAAGCTGTGATACAAAATTTGAACAGTGTCATTTGGGATCAGTGAATATTCTTAGTTGCATACATTCAAATATTCATCTCATATTACTTTCAGAAAAAACAGTAGATAGTTTTATAGAGGATTATATGAATTTGTTATTAAAAATACTTGCAGGTAACGGTTGAAAGCCAATCCTATCACAAGTCCTGTTTTAAGTGCTCTCATGGAGGGTGTGCTTTATCCCCATCAAACTATGCAGCATTAGAGGGTATTCTATATTGCAAACACCACTTCTCTCAGCTTTTCAAGGAAAAGGGAAGCTACAACCACCTGATCAAGTCTGCATCCATGAAGCGCTCCGCTGCCCCGGTTCCTGAAGCTTAAAGTTCCAATTCTTATATCATCATCATCATTCACGGTTTCGGACTTAACTCTCTATTTTACATGAATGTGTTTAACTTAAATTTTTATGGTATTGAGATGGGAAAGAAGGGTAAAGGAAAAATATATATGTTTACCATCATTTCGGCTCATGTGTTTATTTGGGCAAACTGTTGAATTTGATCGATATTTGAGGTGCAAACCTTATATATTGTTTTCAGGACTTGCATATTTGCATGTTTTGAGCATTATGCATTGTGTTTCCGTGCACGAAAAAGTATTTATGGCGAGAATAGGAACTCTCTTGATCTTGCTGTAAGGTTTTTTTTTCATCCTGTAGCCCAAAAAGCTGCATATTGAGTACCCAACAAAAAGAGATTTCTCTTCTAATGGACACCATAAGGTGGGATGAAACATATTCTGGAATGATTTTTTCGGCAATGTGATATTATGATATATGGGAACTAACACGTGATCA

Coding sequence (CDS)

ATGTCTTTCATTGGCACACAACAAAAGTGCAAGGCCTGTGAGAAGACTGTCTACCCTGTAGAGCAGCTCTCTGCTGATGGAGTTTCCTACCATAAATCTTGCTTCAAATGCAGCCACTGCAAAGGGACCCTAAAGCTGAGCAATTATTCTTCAATGGAAGGTGTTCTGTATTGTAAGCCTCATTTTGAGCAGCTCTTCAAAGAGACTGGCAATTTCAACAAAAATTTCCAATCACCTGCCAAGTCAGCTGAGAAGTTAACCCCAGAGCTGACTAGGTCACCTAGCAAAGCTGCTGGCATGTTTTCTGGTACTCAAGACAAATGTGCTACTTGTGGCAAAACTGTCTATCCATTAGAGAAGGTAACGGTTGAAAGCCAATCCTATCACAAGTCCTGTTTTAAGTGCTCTCATGGAGGGTGTGCTTTATCCCCATCAAACTATGCAGCATTAGAGGGTATTCTATATTGCAAACACCACTTCTCTCAGCTTTTCAAGGAAAAGGGAAGCTACAACCACCTGATCAAGTCTGCATCCATGAAGCGCTCCGCTGCCCCGGTTCCTGAAGCTTAA

Protein sequence

MSFIGTQQKCKACEKTVYPVEQLSADGVSYHKSCFKCSHCKGTLKLSNYSSMEGVLYCKPHFEQLFKETGNFNKNFQSPAKSAEKLTPELTRSPSKAAGMFSGTQDKCATCGKTVYPLEKVTVESQSYHKSCFKCSHGGCALSPSNYAALEGILYCKHHFSQLFKEKGSYNHLIKSASMKRSAAPVPEA
Homology
[Close]
BLAST of Cucsat.G5860 vs. ExPASy Swiss-Prot
Match: Q9M047 (LIM domain-containing protein WLIM2b OS=Arabidopsis thaliana OX=3702 GN=WLIM2B PE=1 SV=1)

HSP 1 Score: 180.6 bits (457), Expect = 8.7e-45
Identity = 82/94 (87.23%), Postives = 90/94 (95.74%), Query Frame = 0 

Query: 4   TRSPSKAAGMFSGTQDKCATCGKTVYPLEKVTVESQSYHKSCFKCSHGGCALSPSNYAAL 63
           TR+PS+ AG FSGTQ+KCATC KTVYP+EKVTVESQ+YHKSCFKCSHGGC +SPSNYAAL
Sbjct: 91  TRTPSRVAGRFSGTQEKCATCSKTVYPIEKVTVESQTYHKSCFKCSHGGCPISPSNYAAL 150

Query: 64  EGILYCKHHFSQLFKEKGSYNHLIKSASMKRSAA 98
           EGILYCKHHF+QLFKEKGSYNHLIKSAS+KRSAA
Sbjct: 151 EGILYCKHHFAQLFKEKGSYNHLIKSASIKRSAA 184

[Close]
BLAST of Cucsat.G5860 vs. ExPASy Swiss-Prot
Match: O04193 (LIM domain-containing protein WLIM2a OS=Arabidopsis thaliana OX=3702 GN=WLIN2A PE=1 SV=1)

HSP 1 Score: 178.3 bits (451), Expect = 4.3e-44
Identity = 82/98 (83.67%), Postives = 89/98 (90.82%), Query Frame = 0 

Query: 5   RSPSKAAGMFSGTQDKCATCGKTVYPLEKVTVESQSYHKSCFKCSHGGCALSPSNYAALE 64
           R+PS+ AGMFSGTQDKCATC KTVYP+EKVTVESQ YHKSCFKCSHGGC +SPSNYAALE
Sbjct: 93  RTPSRLAGMFSGTQDKCATCTKTVYPIEKVTVESQCYHKSCFKCSHGGCPISPSNYAALE 152

Query: 65  GILYCKHHFSQLFKEKGSYNHLIKSASMKRSAAPVPEA 103
           GILYCKHHF+QLFKEKGSYNHLIKSAS+KR+ A    A
Sbjct: 153 GILYCKHHFAQLFKEKGSYNHLIKSASIKRATAAATAA 190

[Close]
BLAST of Cucsat.G5860 vs. ExPASy Swiss-Prot
Match: O80839 (LIM domain-containing protein PLIM2a OS=Arabidopsis thaliana OX=3702 GN=PLIM2A PE=1 SV=1)

HSP 1 Score: 141.0 bits (354), Expect = 7.6e-33
Identity = 62/94 (65.96%), Postives = 79/94 (84.04%), Query Frame = 0 

Query: 4   TRSPSKAAGMFSGTQDKCATCGKTVYPLEKVTVESQSYHKSCFKCSHGGCALSPSNYAAL 63
           TR+PSK +  FSGTQDKCATC KTVYPLEKVT+E +SYHK+CF+C+H GC L+ S+YA+L
Sbjct: 89  TRTPSKLSSFFSGTQDKCATCKKTVYPLEKVTMEGESYHKTCFRCTHSGCPLTHSSYASL 148

Query: 64  EGILYCKHHFSQLFKEKGSYNHLIKSASMKRSAA 98
            G+LYCK HF+QLF EKGSYNH+ ++A+  R +A
Sbjct: 149 NGVLYCKVHFNQLFLEKGSYNHVHQAAANHRRSA 182

[Close]
BLAST of Cucsat.G5860 vs. ExPASy Swiss-Prot
Match: Q7F9R9 (LIM domain-containing protein PLIM2b OS=Oryza sativa subsp. japonica OX=39947 GN=PLIM2B PE=1 SV=1)

HSP 1 Score: 141.0 bits (354), Expect = 7.6e-33
Identity = 67/98 (68.37%), Postives = 76/98 (77.55%), Query Frame = 0 

Query: 5   RSPSKAAGMFSGTQDKCATCGKTVYPLEKVTVESQSYHKSCFKCSHGGCALSPSNYAALE 64
           R+PSK    FSGTQDKCA C KTVYPLEK+T+E +SYHKSCFKCSHGGC L+ S+YAAL 
Sbjct: 89  RAPSKICSAFSGTQDKCAACQKTVYPLEKLTLEGESYHKSCFKCSHGGCILTTSSYAALN 148

Query: 65  GILYCKHHFSQLFKEKGSYNHL-IKSASMKRSAAPVPE 102
           G+LYCK HF QLF EKGSYNH+  KS S +     VPE
Sbjct: 149 GVLYCKIHFGQLFMEKGSYNHMKKKSESQEVLPEVVPE 186

[Close]
BLAST of Cucsat.G5860 vs. ExPASy Swiss-Prot
Match: Q500W4 (LIM domain-containing protein PLIM2c OS=Arabidopsis thaliana OX=3702 GN=PLIM2C PE=1 SV=1)

HSP 1 Score: 137.1 bits (344), Expect = 1.1e-31
Identity = 57/91 (62.64%), Postives = 78/91 (85.71%), Query Frame = 0 

Query: 4   TRSPSKAAGMFSGTQDKCATCGKTVYPLEKVTVESQSYHKSCFKCSHGGCALSPSNYAAL 63
           T++P++ +  FSGTQDKCA C KTVYPLEK+T+E +SYHK+CF+C+H GC L+ S+YAAL
Sbjct: 90  TKAPNRLSSFFSGTQDKCAACKKTVYPLEKMTMEGESYHKTCFRCAHSGCPLTHSSYAAL 149

Query: 64  EGILYCKHHFSQLFKEKGSYNHLIKSASMKR 95
           +G+LYCK HFSQLF EKG+YNH++++A+  R
Sbjct: 150 DGVLYCKVHFSQLFLEKGNYNHVLQAAANHR 180

[Close]
BLAST of Cucsat.G5860 vs. NCBI nr
Match: KAA0041533.1 (GATA type zinc finger transcription factor family protein isoform 3 [Cucumis melo var. makuwa])

HSP 1 Score: 214 bits (544), Expect = 2.14e-68
Identity = 101/102 (99.02%), Postives = 101/102 (99.02%), Query Frame = 0 

Query: 1   MLQTRSPSKAAGMFSGTQDKCATCGKTVYPLEKVTVESQSYHKSCFKCSHGGCALSPSNY 60
           M QTRSPSKAAGMFSGTQDKCATCGKTVYPLEKVTVESQSYHKSCFKCSHGGCALSPSNY
Sbjct: 114 MFQTRSPSKAAGMFSGTQDKCATCGKTVYPLEKVTVESQSYHKSCFKCSHGGCALSPSNY 173

Query: 61  AALEGILYCKHHFSQLFKEKGSYNHLIKSASMKRSAAPVPEA 102
           AALEGILYCKHHFSQLFKEKGSYNHLIKSASMKRSAAPVPEA
Sbjct: 174 AALEGILYCKHHFSQLFKEKGSYNHLIKSASMKRSAAPVPEA 215

[Close]
BLAST of Cucsat.G5860 vs. NCBI nr
Match: XP_004138434.1 (LIM domain-containing protein WLIM2b [Cucumis sativus] >XP_008441430.1 PREDICTED: LIM domain-containing protein WLIM2b [Cucumis melo] >XP_008441431.1 PREDICTED: LIM domain-containing protein WLIM2b [Cucumis melo] >XP_011656401.1 LIM domain-containing protein WLIM2b [Cucumis sativus] >KGN45769.1 hypothetical protein Csa_005194 [Cucumis sativus])

HSP 1 Score: 210 bits (534), Expect = 3.07e-67
Identity = 99/99 (100.00%), Postives = 99/99 (100.00%), Query Frame = 0 

Query: 4   TRSPSKAAGMFSGTQDKCATCGKTVYPLEKVTVESQSYHKSCFKCSHGGCALSPSNYAAL 63
           TRSPSKAAGMFSGTQDKCATCGKTVYPLEKVTVESQSYHKSCFKCSHGGCALSPSNYAAL
Sbjct: 91  TRSPSKAAGMFSGTQDKCATCGKTVYPLEKVTVESQSYHKSCFKCSHGGCALSPSNYAAL 150

Query: 64  EGILYCKHHFSQLFKEKGSYNHLIKSASMKRSAAPVPEA 102
           EGILYCKHHFSQLFKEKGSYNHLIKSASMKRSAAPVPEA
Sbjct: 151 EGILYCKHHFSQLFKEKGSYNHLIKSASMKRSAAPVPEA 189

[Close]
BLAST of Cucsat.G5860 vs. NCBI nr
Match: XP_038884117.1 (LIM domain-containing protein WLIM2b [Benincasa hispida] >XP_038884118.1 LIM domain-containing protein WLIM2b [Benincasa hispida])

HSP 1 Score: 209 bits (532), Expect = 6.18e-67
Identity = 98/99 (98.99%), Postives = 99/99 (100.00%), Query Frame = 0 

Query: 4   TRSPSKAAGMFSGTQDKCATCGKTVYPLEKVTVESQSYHKSCFKCSHGGCALSPSNYAAL 63
           TRSPSKAAGMFSGTQDKCATCGKTVYPLEKVTVESQSYHKSCFKCSHGGCA+SPSNYAAL
Sbjct: 91  TRSPSKAAGMFSGTQDKCATCGKTVYPLEKVTVESQSYHKSCFKCSHGGCAISPSNYAAL 150

Query: 64  EGILYCKHHFSQLFKEKGSYNHLIKSASMKRSAAPVPEA 102
           EGILYCKHHFSQLFKEKGSYNHLIKSASMKRSAAPVPEA
Sbjct: 151 EGILYCKHHFSQLFKEKGSYNHLIKSASMKRSAAPVPEA 189

[Close]
BLAST of Cucsat.G5860 vs. NCBI nr
Match: KAG6578438.1 (LIM domain-containing protein WLIM2b, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 203 bits (516), Expect = 1.69e-64
Identity = 95/99 (95.96%), Postives = 97/99 (97.98%), Query Frame = 0 

Query: 4   TRSPSKAAGMFSGTQDKCATCGKTVYPLEKVTVESQSYHKSCFKCSHGGCALSPSNYAAL 63
           TRSPSKAAGMFSGTQDKCATCGKTVYPLEKVTVESQSYHKSCFKCSHGGC++SPSNYAAL
Sbjct: 91  TRSPSKAAGMFSGTQDKCATCGKTVYPLEKVTVESQSYHKSCFKCSHGGCSISPSNYAAL 150

Query: 64  EGILYCKHHFSQLFKEKGSYNHLIKSASMKRSAAPVPEA 102
           EGILYCKHHFSQLFKEKGSYNHLIKSASMKR AA VPEA
Sbjct: 151 EGILYCKHHFSQLFKEKGSYNHLIKSASMKRPAASVPEA 189

[Close]
BLAST of Cucsat.G5860 vs. NCBI nr
Match: XP_022939310.1 (LIM domain-containing protein WLIM2b [Cucurbita moschata] >XP_022939311.1 LIM domain-containing protein WLIM2b [Cucurbita moschata] >XP_022939312.1 LIM domain-containing protein WLIM2b [Cucurbita moschata] >XP_022993072.1 LIM domain-containing protein WLIM2b [Cucurbita maxima] >XP_022993073.1 LIM domain-containing protein WLIM2b [Cucurbita maxima] >KAG7015999.1 LIM domain-containing protein WLIM2b [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 203 bits (516), Expect = 1.69e-64
Identity = 95/99 (95.96%), Postives = 97/99 (97.98%), Query Frame = 0 

Query: 4   TRSPSKAAGMFSGTQDKCATCGKTVYPLEKVTVESQSYHKSCFKCSHGGCALSPSNYAAL 63
           TRSPSKAAGMFSGTQDKCATCGKTVYPLEKVTVESQSYHKSCFKCSHGGC++SPSNYAAL
Sbjct: 91  TRSPSKAAGMFSGTQDKCATCGKTVYPLEKVTVESQSYHKSCFKCSHGGCSISPSNYAAL 150

Query: 64  EGILYCKHHFSQLFKEKGSYNHLIKSASMKRSAAPVPEA 102
           EGILYCKHHFSQLFKEKGSYNHLIKSASMKR AA VPEA
Sbjct: 151 EGILYCKHHFSQLFKEKGSYNHLIKSASMKRPAASVPEA 189

[Close]
BLAST of Cucsat.G5860 vs. ExPASy TrEMBL
Match: A0A5A7TEG3 (GATA type zinc finger transcription factor family protein isoform 3 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold6G001300 PE=4 SV=1)

HSP 1 Score: 214 bits (544), Expect = 1.03e-68
Identity = 101/102 (99.02%), Postives = 101/102 (99.02%), Query Frame = 0 

Query: 1   MLQTRSPSKAAGMFSGTQDKCATCGKTVYPLEKVTVESQSYHKSCFKCSHGGCALSPSNY 60
           M QTRSPSKAAGMFSGTQDKCATCGKTVYPLEKVTVESQSYHKSCFKCSHGGCALSPSNY
Sbjct: 114 MFQTRSPSKAAGMFSGTQDKCATCGKTVYPLEKVTVESQSYHKSCFKCSHGGCALSPSNY 173

Query: 61  AALEGILYCKHHFSQLFKEKGSYNHLIKSASMKRSAAPVPEA 102
           AALEGILYCKHHFSQLFKEKGSYNHLIKSASMKRSAAPVPEA
Sbjct: 174 AALEGILYCKHHFSQLFKEKGSYNHLIKSASMKRSAAPVPEA 215

[Close]
BLAST of Cucsat.G5860 vs. ExPASy TrEMBL
Match: A0A1S3B3E4 (LIM domain-containing protein WLIM2b OS=Cucumis melo OX=3656 GN=LOC103485550 PE=4 SV=1)

HSP 1 Score: 210 bits (534), Expect = 1.48e-67
Identity = 99/99 (100.00%), Postives = 99/99 (100.00%), Query Frame = 0 

Query: 4   TRSPSKAAGMFSGTQDKCATCGKTVYPLEKVTVESQSYHKSCFKCSHGGCALSPSNYAAL 63
           TRSPSKAAGMFSGTQDKCATCGKTVYPLEKVTVESQSYHKSCFKCSHGGCALSPSNYAAL
Sbjct: 91  TRSPSKAAGMFSGTQDKCATCGKTVYPLEKVTVESQSYHKSCFKCSHGGCALSPSNYAAL 150

Query: 64  EGILYCKHHFSQLFKEKGSYNHLIKSASMKRSAAPVPEA 102
           EGILYCKHHFSQLFKEKGSYNHLIKSASMKRSAAPVPEA
Sbjct: 151 EGILYCKHHFSQLFKEKGSYNHLIKSASMKRSAAPVPEA 189

[Close]
BLAST of Cucsat.G5860 vs. ExPASy TrEMBL
Match: A0A0A0KAA4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G009480 PE=4 SV=1)

HSP 1 Score: 210 bits (534), Expect = 1.48e-67
Identity = 99/99 (100.00%), Postives = 99/99 (100.00%), Query Frame = 0 

Query: 4   TRSPSKAAGMFSGTQDKCATCGKTVYPLEKVTVESQSYHKSCFKCSHGGCALSPSNYAAL 63
           TRSPSKAAGMFSGTQDKCATCGKTVYPLEKVTVESQSYHKSCFKCSHGGCALSPSNYAAL
Sbjct: 91  TRSPSKAAGMFSGTQDKCATCGKTVYPLEKVTVESQSYHKSCFKCSHGGCALSPSNYAAL 150

Query: 64  EGILYCKHHFSQLFKEKGSYNHLIKSASMKRSAAPVPEA 102
           EGILYCKHHFSQLFKEKGSYNHLIKSASMKRSAAPVPEA
Sbjct: 151 EGILYCKHHFSQLFKEKGSYNHLIKSASMKRSAAPVPEA 189

[Close]
BLAST of Cucsat.G5860 vs. ExPASy TrEMBL
Match: A0A6J1K140 (LIM domain-containing protein WLIM2b OS=Cucurbita maxima OX=3661 GN=LOC111489197 PE=4 SV=1)

HSP 1 Score: 203 bits (516), Expect = 8.16e-65
Identity = 95/99 (95.96%), Postives = 97/99 (97.98%), Query Frame = 0 

Query: 4   TRSPSKAAGMFSGTQDKCATCGKTVYPLEKVTVESQSYHKSCFKCSHGGCALSPSNYAAL 63
           TRSPSKAAGMFSGTQDKCATCGKTVYPLEKVTVESQSYHKSCFKCSHGGC++SPSNYAAL
Sbjct: 91  TRSPSKAAGMFSGTQDKCATCGKTVYPLEKVTVESQSYHKSCFKCSHGGCSISPSNYAAL 150

Query: 64  EGILYCKHHFSQLFKEKGSYNHLIKSASMKRSAAPVPEA 102
           EGILYCKHHFSQLFKEKGSYNHLIKSASMKR AA VPEA
Sbjct: 151 EGILYCKHHFSQLFKEKGSYNHLIKSASMKRPAASVPEA 189

[Close]
BLAST of Cucsat.G5860 vs. ExPASy TrEMBL
Match: A0A6J1FFI9 (LIM domain-containing protein WLIM2b OS=Cucurbita moschata OX=3662 GN=LOC111445264 PE=4 SV=1)

HSP 1 Score: 203 bits (516), Expect = 8.16e-65
Identity = 95/99 (95.96%), Postives = 97/99 (97.98%), Query Frame = 0 

Query: 4   TRSPSKAAGMFSGTQDKCATCGKTVYPLEKVTVESQSYHKSCFKCSHGGCALSPSNYAAL 63
           TRSPSKAAGMFSGTQDKCATCGKTVYPLEKVTVESQSYHKSCFKCSHGGC++SPSNYAAL
Sbjct: 91  TRSPSKAAGMFSGTQDKCATCGKTVYPLEKVTVESQSYHKSCFKCSHGGCSISPSNYAAL 150

Query: 64  EGILYCKHHFSQLFKEKGSYNHLIKSASMKRSAAPVPEA 102
           EGILYCKHHFSQLFKEKGSYNHLIKSASMKR AA VPEA
Sbjct: 151 EGILYCKHHFSQLFKEKGSYNHLIKSASMKRPAASVPEA 189

[Close]
BLAST of Cucsat.G5860 vs. TAIR 10
Match: AT3G55770.1 (GATA type zinc finger transcription factor family protein )

HSP 1 Score: 180.6 bits (457), Expect = 6.2e-46
Identity = 82/94 (87.23%), Postives = 90/94 (95.74%), Query Frame = 0 

Query: 4   TRSPSKAAGMFSGTQDKCATCGKTVYPLEKVTVESQSYHKSCFKCSHGGCALSPSNYAAL 63
           TR+PS+ AG FSGTQ+KCATC KTVYP+EKVTVESQ+YHKSCFKCSHGGC +SPSNYAAL
Sbjct: 91  TRTPSRVAGRFSGTQEKCATCSKTVYPIEKVTVESQTYHKSCFKCSHGGCPISPSNYAAL 150

Query: 64  EGILYCKHHFSQLFKEKGSYNHLIKSASMKRSAA 98
           EGILYCKHHF+QLFKEKGSYNHLIKSAS+KRSAA
Sbjct: 151 EGILYCKHHFAQLFKEKGSYNHLIKSASIKRSAA 184

[Close]
BLAST of Cucsat.G5860 vs. TAIR 10
Match: AT3G55770.2 (GATA type zinc finger transcription factor family protein )

HSP 1 Score: 180.6 bits (457), Expect = 6.2e-46
Identity = 82/94 (87.23%), Postives = 90/94 (95.74%), Query Frame = 0 

Query: 4   TRSPSKAAGMFSGTQDKCATCGKTVYPLEKVTVESQSYHKSCFKCSHGGCALSPSNYAAL 63
           TR+PS+ AG FSGTQ+KCATC KTVYP+EKVTVESQ+YHKSCFKCSHGGC +SPSNYAAL
Sbjct: 91  TRTPSRVAGRFSGTQEKCATCSKTVYPIEKVTVESQTYHKSCFKCSHGGCPISPSNYAAL 150

Query: 64  EGILYCKHHFSQLFKEKGSYNHLIKSASMKRSAA 98
           EGILYCKHHF+QLFKEKGSYNHLIKSAS+KRSAA
Sbjct: 151 EGILYCKHHFAQLFKEKGSYNHLIKSASIKRSAA 184

[Close]
BLAST of Cucsat.G5860 vs. TAIR 10
Match: AT3G55770.3 (GATA type zinc finger transcription factor family protein )

HSP 1 Score: 180.6 bits (457), Expect = 6.2e-46
Identity = 82/94 (87.23%), Postives = 90/94 (95.74%), Query Frame = 0 

Query: 4   TRSPSKAAGMFSGTQDKCATCGKTVYPLEKVTVESQSYHKSCFKCSHGGCALSPSNYAAL 63
           TR+PS+ AG FSGTQ+KCATC KTVYP+EKVTVESQ+YHKSCFKCSHGGC +SPSNYAAL
Sbjct: 91  TRTPSRVAGRFSGTQEKCATCSKTVYPIEKVTVESQTYHKSCFKCSHGGCPISPSNYAAL 150

Query: 64  EGILYCKHHFSQLFKEKGSYNHLIKSASMKRSAA 98
           EGILYCKHHF+QLFKEKGSYNHLIKSAS+KRSAA
Sbjct: 151 EGILYCKHHFAQLFKEKGSYNHLIKSASIKRSAA 184

[Close]
BLAST of Cucsat.G5860 vs. TAIR 10
Match: AT3G55770.4 (GATA type zinc finger transcription factor family protein )

HSP 1 Score: 180.6 bits (457), Expect = 6.2e-46
Identity = 82/94 (87.23%), Postives = 90/94 (95.74%), Query Frame = 0 

Query: 4   TRSPSKAAGMFSGTQDKCATCGKTVYPLEKVTVESQSYHKSCFKCSHGGCALSPSNYAAL 63
           TR+PS+ AG FSGTQ+KCATC KTVYP+EKVTVESQ+YHKSCFKCSHGGC +SPSNYAAL
Sbjct: 91  TRTPSRVAGRFSGTQEKCATCSKTVYPIEKVTVESQTYHKSCFKCSHGGCPISPSNYAAL 150

Query: 64  EGILYCKHHFSQLFKEKGSYNHLIKSASMKRSAA 98
           EGILYCKHHF+QLFKEKGSYNHLIKSAS+KRSAA
Sbjct: 151 EGILYCKHHFAQLFKEKGSYNHLIKSASIKRSAA 184

[Close]
BLAST of Cucsat.G5860 vs. TAIR 10
Match: AT3G55770.5 (GATA type zinc finger transcription factor family protein )

HSP 1 Score: 180.6 bits (457), Expect = 6.2e-46
Identity = 82/94 (87.23%), Postives = 90/94 (95.74%), Query Frame = 0 

Query: 4   TRSPSKAAGMFSGTQDKCATCGKTVYPLEKVTVESQSYHKSCFKCSHGGCALSPSNYAAL 63
           TR+PS+ AG FSGTQ+KCATC KTVYP+EKVTVESQ+YHKSCFKCSHGGC +SPSNYAAL
Sbjct: 91  TRTPSRVAGRFSGTQEKCATCSKTVYPIEKVTVESQTYHKSCFKCSHGGCPISPSNYAAL 150

Query: 64  EGILYCKHHFSQLFKEKGSYNHLIKSASMKRSAA 98
           EGILYCKHHF+QLFKEKGSYNHLIKSAS+KRSAA
Sbjct: 151 EGILYCKHHFAQLFKEKGSYNHLIKSASIKRSAA 184

The following BLAST results are available for this feature:
BLAST of Cucsat.G5860 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9M0478.7e-4587.23LIM domain-containing protein WLIM2b OS=Arabidopsis thaliana OX=3702 GN=WLIM2B P... [more]
O041934.3e-4483.67LIM domain-containing protein WLIM2a OS=Arabidopsis thaliana OX=3702 GN=WLIN2A P... [more]
O808397.6e-3365.96LIM domain-containing protein PLIM2a OS=Arabidopsis thaliana OX=3702 GN=PLIM2A P... [more]
Q7F9R97.6e-3368.37LIM domain-containing protein PLIM2b OS=Oryza sativa subsp. japonica OX=39947 GN... [more]
Q500W41.1e-3162.64LIM domain-containing protein PLIM2c OS=Arabidopsis thaliana OX=3702 GN=PLIM2C P... [more]
BLAST of Cucsat.G5860 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0041533.12.14e-6899.02GATA type zinc finger transcription factor family protein isoform 3 [Cucumis mel... [more]
XP_004138434.13.07e-67100.00LIM domain-containing protein WLIM2b [Cucumis sativus] >XP_008441430.1 PREDICTED... [more]
XP_038884117.16.18e-6798.99LIM domain-containing protein WLIM2b [Benincasa hispida] >XP_038884118.1 LIM dom... [more]
KAG6578438.11.69e-6495.96LIM domain-containing protein WLIM2b, partial [Cucurbita argyrosperma subsp. sor... [more]
XP_022939310.11.69e-6495.96LIM domain-containing protein WLIM2b [Cucurbita moschata] >XP_022939311.1 LIM do... [more]
BLAST of Cucsat.G5860 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7TEG31.03e-6899.02GATA type zinc finger transcription factor family protein isoform 3 OS=Cucumis m... [more]
A0A1S3B3E41.48e-67100.00LIM domain-containing protein WLIM2b OS=Cucumis melo OX=3656 GN=LOC103485550 PE=... [more]
A0A0A0KAA41.48e-67100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G009480 PE=4 SV=1[more]
A0A6J1K1408.16e-6595.96LIM domain-containing protein WLIM2b OS=Cucurbita maxima OX=3661 GN=LOC111489197... [more]
A0A6J1FFI98.16e-6595.96LIM domain-containing protein WLIM2b OS=Cucurbita moschata OX=3662 GN=LOC1114452... [more]
BLAST of Cucsat.G5860 vs. TAIR 10
Match NameE-valueIdentityDescription
AT3G55770.16.2e-4687.23GATA type zinc finger transcription factor family protein [more]
AT3G55770.26.2e-4687.23GATA type zinc finger transcription factor family protein [more]
AT3G55770.36.2e-4687.23GATA type zinc finger transcription factor family protein [more]
AT3G55770.46.2e-4687.23GATA type zinc finger transcription factor family protein [more]
AT3G55770.56.2e-4687.23GATA type zinc finger transcription factor family protein [more]
InterPro
Analysis Name: InterPro Annotations of Cucumber (B10) v3
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001781Zinc finger, LIM-typeSMARTSM00132lim_4coord: 20..72
e-value: 2.8E-13
score: 60.1
IPR001781Zinc finger, LIM-typePFAMPF00412LIMcoord: 21..76
e-value: 6.4E-12
score: 45.5
IPR001781Zinc finger, LIM-typePROSITEPS50023LIM_DOMAIN_2coord: 19..79
score: 12.711699
NoneNo IPR availableGENE3D2.10.110.10Cysteine Rich Proteincoord: 15..85
e-value: 3.3E-21
score: 77.2
NoneNo IPR availablePANTHERPTHR24206:SF94LIM DOMAIN-CONTAINING PROTEIN WLIM2Bcoord: 4..102
NoneNo IPR availablePANTHERPTHR24206OS06G0237300 PROTEINcoord: 4..102
NoneNo IPR availableCDDcd09441LIM2_SF3coord: 21..81
e-value: 2.43738E-38
score: 121.038
NoneNo IPR availableSUPERFAMILY57716Glucocorticoid receptor-like (DNA-binding domain)coord: 13..46
NoneNo IPR availableSUPERFAMILY57716Glucocorticoid receptor-like (DNA-binding domain)coord: 47..86

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cucsat.G5860.T17Cucsat.G5860.T17mRNA
Cucsat.G5860.T21Cucsat.G5860.T21mRNA
Cucsat.G5860.T1Cucsat.G5860.T1mRNA
Cucsat.G5860.T3Cucsat.G5860.T3mRNA
Cucsat.G5860.T22Cucsat.G5860.T22mRNA
Cucsat.G5860.T14Cucsat.G5860.T14mRNA
Cucsat.G5860.T23Cucsat.G5860.T23mRNA
Cucsat.G5860.T19Cucsat.G5860.T19mRNA
Cucsat.G5860.T15Cucsat.G5860.T15mRNA
Cucsat.G5860.T4Cucsat.G5860.T4mRNA
Cucsat.G5860.T20Cucsat.G5860.T20mRNA
Cucsat.G5860.T16Cucsat.G5860.T16mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0051017 actin filament bundle assembly
cellular_component GO:0015629 actin cytoskeleton
cellular_component GO:0005886 plasma membrane
molecular_function GO:0051015 actin filament binding
molecular_function GO:0046872 metal ion binding