Cucsat.G5332.T3 (mRNA) Cucumber (B10) v3

Overview


Name	Cucsat.G5332.T3
Type	mRNA
Organism	Cucumis sativus L. var. sativus cv B10 (Cucumber (B10) v3)
Description	short integuments 2, mitochondrial
Location	ctg1252: 407844 .. 416301 (+)
RNA-Seq Expression	Cucsat.G5332.T3
Synteny	Cucsat.G5332.T3

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ACCTCCGTCGTCGTCGGAGAAAACACAGAAATGAGAGGGATCACCGGAGTCGTGAAGAAGGCTCTTGGAGACATGGAGTTCACTGCCGGCGGTGGAGCCATCAATTGGTTCCCCGGCCACATGGCTGCAGCCACTCGTGCCATTCGTCATAGACTGAAGCTCGCGGACATGGTCATCGAGGTCAGGGATTCCCGAATTCCCTTGTCCTCGGCCAATCAAGACCTCCAGCCTCATCTCGCTTCCAAACGCCGCGTCATTGCCCTCAACAAGAAAGATTTGGCTAACCCTAATATCATGAATGTAAGACACCACTGAACCATTCTGTTTCATTGAGTTTTTGAAGTTTTGGCTATAGGATATGAAAATCATTTCCGAATTCGGAATCCTCTCTAACTATGAATTCTCAATATATATATTCTTCCGAATCTCCGTTTCAAAAGTCTGTAAATTGATATGTGAATGGATGTGTACGCTTGTGTATGTTCATTAATCAGTTTTTGTTTATAGTTTTTCTTTGTTCGCTTTGTTATCCTTACGACTTTAATTTTGCAGAAATGGGTTAACTTTTTTGACTCATGCAATCAAGATTGCGTACCAATTAACGCTCACAGTAAGAGTTCTGTTCGGAAGGTATTTTTCCTTTCTACAGTGCTGCAGTGGTATTCATTTATAGGTTGCAATTAATCTCGAGATTCTAGCACCTCATTTCCTATGATATATTGAATTGCTAGAACTATCGAAGATCGCATACTTTGTTGATACTTTTTTTTTTCTTTGGATGATGGCACTAGTTATGTTATTTATTATTTATTACTCACTTTAAAGATGAAAACTGATGAGTTAGACAAGTTTCTAGTTGTTTAGATTTTTCTTCATCCTTTCTGTTTTAAATTTAAAATTGAATGCTTATTAGTTTTGTGCATGTATGGTAAGTAAACTTAAAATGATCCTTTGACAACTCTTTAGGCTTCTTTTTGTATTTACTTACACATTACATCTCAATGTTGAATTGTCAACTTGTCATAAGTGTATTGCAAATTGCAGTAGCTTATTATTGGGTTTAGTGTTTAACTAGCTAGTTTGTTTGATTTAGTGTATTTCAATATTTATTTATTTTATTTTTCTGCTAAAAAGGCCTAACTGATTTTTTATTGATAAAAAAGCTTCTCGAGCTTGTGGAATTTAAACTGAAGGAAGCAATTTCAAGGGAACCTACTCTTCTTGTTATGGTCGTTGGTGTTCCGAATGTTGGGAAGTCGGCTTTAATTAATTCAATCCATCAAATTGCTTCTGAACGCTTTCCAGGTAAGACTAGTTCTTGGAGCAAGATGCCAATTTCTCTTTTCTATTGAAGTGTACATATTCTGTTTCGCTTGGTCTGGAGGCTTTGTTTATTAGACTTTTGTGGTTCAATAATTTTTCATAGTGCAGGAGAAAAGGAAGCGAGCTACTGTTGGTCCCTTGCCTGGGGTTACTCAAGATATAGCTGGCTACAAGGTAGTTTTGATCAACCACACATCTTCATTTTTAGTAATCAATTTCTACTTTTGCGTCTCCCCTCCTTTCTTCTTTGTGAGATGAAATCTTATAATCATGAAGTATCAACCATTTGCAATTCTTCTGATGTGCAGATTGCTCATCAACCTAGCATATATGTTCTAGACACTCCTGGTGTATTAGTTCCAAGTATCCAAGATATCGAGACAGGGTTAAAACTAGCACTTGCAGGTTGTTTCTAGTTTATAAGAATTTCTACTTTTTGTTTTTCAAACAACATTTTGGTAAGCTATATACTATAGCGTTATGGACACTGAGATATGCTATACAAGAATGATGTAATAATGTGAAATACTACTTGTGTGGTTGATTTCATTTAACTATTACTGCTGCTGGTCACACATATGGATTATATAATAAATAATTAATCATGCAATCTGACAACAATAAACAAAATTTGGAAGTACCGAAACTTCTTAAATTATTCTAACTTTTAGTCTAGAGCTAGACAATTTGAGAGAGCATGGAGTCCTCATCCCCTCTACCAACTGAGCCCATTTTCCAAGCTTAGCAGGATCACAACTTGCGATACTTTACTAGTATTCTTGTGATGGATAATGTATGGGTTTGGAGTGATGGTTTTATTTCCTCATCGTATTTTTCTGTTTTTGTGGAAGGCAGATTCCTTTTTCATGTGTTTGATGGATTCCAGTTTCCACACCCATAACGTAGCTTTTTGGTCTGAGTCCGAATGAGATATTTTTGTTTTCCAACCTCCTGAATCATATAATTGGATCTCATTCATTGTCAGTTTGGTTTAGTTTTCTCTTATTATTGTGATAGGAATAGCATCAAAGGGATATTAAGGGTATGTTACTAATTAGTGGAGTAGTTTGTTAGGGAAGTTGGTTATAAATAGAGGGAATGGGGAGTGGAGAAGATAGACAATATTTGGGGAGTGAATTAGGACTTGAGAGTTATCTCATGATTGAGCAGGTTCAAGTAGTTTATCTTGTATTTTCATTATTGTTGATCTTTCAATGTATTCGGTTCTATGGCACCATCATGTTGATATCAACTATATTGTGTACTGCATCTTCTTGTAGACTGATCCATAATTTTTCACATGGAAGCAGGATCTGTCAAGGATGCAGTGGTGGGTGAGGAGCGGATTGCTCAATATCTTCTGGCTGTTCTGAATTCTCGAAGGACTCCTTTCCATTGGAGGAGACATTTGAATAACAGAAGAGTGGAAGGTATTCGATATGAACCAGAGGAAAGGCACAAATTTAATCTTAATGACCTCCAGCCAAAGAGGAGGGCTCCTCCAAATAAGTCTGATGTGGTCTATGTTGAGGTAAGGAAAGAATTTCTTATTAGACTGATCAACTCCTAGAGTGTCTTTGGCTTCCAATGCTCCATGGGATCTTAATGAATAGTAGTTCACAATGGGAAGGAGAGAATTCCAGGTCTAGATAGTTCACAAGAACCAGACAGACGTTAGTTGTTGCTTTCTAAACAGTATCATTACTGTGCTTCTAATAGGGAACCAGATGGAAATCTTTATTGAAAAGAAATGCCATAAGGCAAATTACATTCACCATTGAAATAAGAACAACAACAGTTTCCCACTCACTCTCGAGAAGCCCTCACTTCCTAACCAACTAACTGATTTCCCTCCCTATCAATTTCTCTAAAATATCACTCTCCTTCTACTTATGTGGCCCCCACTCGACAGCTAATACCAGCTCACTTCCAACTATTCTTCAGAAGCCGAACTCCTGCAAACAATGACTTTCCCTTTTTCTACCCTTTCTATAATGCTGCAATACAATTGGAGGTCTATCATTACCATCCCCTTCAAGAACCACCTTGTCCTCAAGGTGATATTCTGGAATTTTCCTTTTGAAATCATCAAATAACTCCCATGTTGCTTGATTCAGCAAATCTTTCAGACCGACCAGAACTTCCCAAGCTGGAAGATAGATTCTTTCGATAACCAAAAACTTTAGCTGGCTAAGTCAACCATTCATGTGTCTCAGTTAAATAAGGAAGCATAGTTTGGACTTAATGATGTTGTCCCAATGCTCGTTTCAACCGAGAAACATGAAAGACATGATGGACAGTAGCAACAAATGGTTATTCCAATCGATAAGCAATGGATCCCACTCGCTCATACTCGATACGACCCAAATTATTTGCAAGAGAGCTTCTCATTTCGTCTTCGATGTAAAGTAGATTGCCTATATGGCCGAATTTTCAAAAACACTAAATCATTCATCTGGAATTGAACATCCCTTCGCTTTTGGTCAGCTTCTTTCTTCATTTTCTCTTGAGCAATTCGTAAGTGCTCCTTCAAAACACGAAAAGCCACATCTCTCTCCCTCAGCTATTGATCCAATGATGATTTAGCTTTAGTAAACTCGCCATAATAAAGCAAGGGTGGTGGTAATTGGCCATAGACTACCTGAAATGGAGTCACTCCAAAGGATATTTGATATGTTGTATTGTACCAATATTCTGCCAACACAGCCAGAAAATCCACTCTTTCATTCTCTCCCCACGAAAACAGTGCTAATAAGCTTCTACACTTCGATTCACCATTTCAGTTTGACCATCCAATTATGGATGTTATGCTGAACTTCTATTGAGTTGTGTTCCTGCCAAACAACAAAGTTTCTCGCAAAAAATGGCTTAGAAACACTTTACCCCTATATGACACAATAGATTGAGGATAACCATACAACTTAATGACCTCCCTTACAAATACATTAGCCACAAACTTTGTTGTGAATGGATTCTTTAAAGCTAAGAAATGAGCATATTTGCACAGCTGATCCACTACAACAAATATTTTTTTTTGGAAAAGGAGACATGCTTCTTTATTAATAATATTCAAAGTACAAGAGAGTTAAACATTGAGAATAATAGAGAAGCCTAGAAATGGGGGAGAGAGATAGAGATGATTAGTAAGTGCGCTTGGACATCTCAACTAGGTTGACACCCCATAACACCCTCATCAAATCCAAAATAATACGAAAGATATTCAGGTCATGCTAAGATCGAAAACAATGTTAAATACTCTCTAACAGAAGACAGATACAAAGCTGAAAAAAGATAAAACAAATGTGGGAATACAGAATAAATCCCAGCAACACTACAAAAACACAAAATTTATTCTAGCAATCTGGAACATAACAGTCCTGAATTTCTTCAGATGAAGGCAGTCCAGTTGAGGCATAAGTCCTGAATTGAATAACCTTTAAATTAAGCATTCAAAGAACACCAAGCAGCTGCATTTCTTTTAGAAGATTCTACTATATTAACCCAATCTCTTTTCTTATCATGGAAAATGCGTTGGTTGTGCTCAAACCAAATCTCTGCTAGCAACGCTTTTATCAAATTAACCAATATTAGAAAAGTTTTTTTTATAAATAAGGCCCTCTCAATAATTGAAATACATTGGTATGTAGAGAACCATAAAAGACCCAAACTGTTTTGAGCATAGAAAAGATGCTAAACTAGCATTTAGATGAGAAGGGGCATATAAAGAATAGATGCATTAGTTGCTCACTGTCCTTCAAGCATGGGGCACACTGATGGCAGCAAACAATTATTAGGAATTTTCCTTTGCAAAGTTCTGGAGCCATCAAGAAGACCGAATGCCATAACGCAAACCAGAACATTATTCTCCTTGGGTTGTTAGATTTCCAAAGTGCTTTAAAGCAATCTTTTTCAAAGGGAAAGAAGGAGAGAGGTGATTCGAAAGGGCTTAACTGATAAATGACCCGAGGTCTCTAGTGACCAAACTCTCCTATCTTCCAAATCTATTAAACCTTTCAAAGAAATGAGGGTTAATAGGCGCTGAAAATCTTGTATTTCCTCATCTTTCAGGGGTCTTCAAAAAATCAAAGACCAAGACTTTGTGACATAATCCCAGCAGGCAGCCACTGAGTCATTGGGCAGCTGAGCTAATTTGAAAAGATTTGGGAATTGAGTTTTAAGAGCTAATCTGGTCAATAGCTCCAAGTGTGGTTGGACTAGCATTCTCACTCACAGAGGAAGAAGATAAAATAGGGAACGTGGTTACCAGGTTCTTTGAATACATTGGTACAGGAGTGTTGGATGTCGTCCCTAGGATAGCCTCAATTGCTGCAATCTGTTGTTGAAGACCTTCCAGTTATTGCTAAGTTTTTCTAGATGAGGAAACTTGCATGATAGGGTTGAAATGTGCCGAAAATTCACCAACCTCAAATGTTGAGTGAATTTGAGGACTCTTATAATCAAGTTAATAACTAAGGTCATTGGGCATATAGATTTAACTGCAGAAGCGGTAGTCGCCGGTCAGAATTAGGTGGCAGAACACAAATCGCCACGTGGGGAACACTACATGCAGCAGATGAAGATGAGGGTGGCACGGTTGGGATTGCCGGCGACGTCTGAACATGATGGACCGACACGTGTAGTTCCTCCAGCGGTGCGTGAACTTCCGACAGCGGTGTGTGAGCGGGTTCTGGCGGCACGGACGACGAAAATATCTGCCGAATTATGTTTCCCGGCATTTTTTGAAGGCGGCGGAGCCATTCGTCCATGGCAGCATTGATTCAAGCATCGACGACGGCGACACTAAAACTGGCGGTTGTATCCTCTGTGTGATTTCCATCACTGGTCGTGTTTTCTAGGATGTGTTCAATGTCCCGCTCTGATACCATATTAAACCACCCATTCATTCAAAAGCTTAAGCTAGTAGTTGAAGCCTGAAGGCAAATTTAATTATATATCACCAACAGTTACTTCATTGAGTTTTAGTTTGCTAGATGGGATTCATTATTTGTGTTTATTTACACAAACAAAAAAGAGATTCGAGTGTAGTCACCCATCATCACACTTCCGAAAACACATGGAATGTGGCAAAACAAGTATAATTCAGCAGTTTAGAACTCTCTACTTTCTTTGGGAGGTCGTAGATATAGATTTCTACCCTCGTATTGGCGTTAATATATTTCACTGAAGAACAGAAAAGGGATAGCTATTTTGCGTTGGCTGCTTCATTTTCTTAACTTTATTTTTTATTTGGACGGAGATGGCGATGACTGAGTTTTCTTTTCCTAACATGTTTGGTATTTCCTTAGGAAAGGCTTCAGAGCGTTCCGGGTGATGTTTGGTCCTTGTATGATTCTTCGCTTCTCTCTACCAGCGTCGGTTCTTGAAATGATCTTTTAGGTCTGGAGGCATTTTTAAAATTTTTCCTCCTTTCTTGTAGGTTGTCTTGTTTGGCTGCCTTTCATGCTTCTTAAGAAGCACGAACATATACACGGCAATACGCCAATCTAAAATACTAAAATACTAGAACACGGACACATTTGGGGATGCTATTTTTTTATATTATACTTTTAGAATATATGTGCATTTAAGATCAAATACTCAATCAATCCCACTAAAATTGCATAAATGTCTGTCAGTTAGTTTAATTAATGATTGTCATCCTAACATTTAACAAATAATATTAAAAAATATGTAAAAGAGTTTCAACTTTGAAGATAGGGAAAAAAAACGGCAGTACGCAGATGGTAGCTGGCCGTAGCTTAAAAACGTTAATTGTAAAAATCTGCTGGCAGCGTTGGCAAAAATTTCTGCTCTTGTGAGAACTGGGGAGGCATCCTTAGTGCTGCAGCTACTCGGAAGTGCAGGACAAGGCCATGGGTTTTCGTTTTTATATATATTTCAAAAAGGAAGCTAATGGGCTTTAAAGTTGGGCCCAAATTTAAAACAATTTTGTTAATGACCATTTTAGGAATAATATAGTAACATTTAAAAAAATTATAAATATAGCAAAATTATTGCGGATAGACTTGTATCGTTGATAGATTTGTATGATTTATCCATGATAGACCAATATTTACAATATGGTCTATTGGTTCGATAGAATTTGACAAATTTTGCTATATTTGCAATTTTTTAAAAATGTTGCTATATACTTAATTATTTTGCATTATTTTGCATCTAATGGCTAAATTTGTAACTATCCCAATTATTATTTTTTTTCGGTGTGTTCACTGTCCGTTTCAGAAATTCAAAAAAATAAAAAACAGAACACTCAAATTGGTGTGTGGTCACGTGTCCATGAAATGTCCGTCTTAGATTGTTCTGATGAAACATCGGTTATTCACCAAAATCTATAACATTATACATCTTTCATATGTATATCCTGTCACCTCTTCTTTCTCACGATTTTCATTTGGAGAGACTCTTGTTGGTGTCAGTTTATTTTGTCCATCATTACTTGTTTTTTGTACCTCACTTTTGTTGCACTTTCTTCCTTCCTCCCGATGTTTGTGGGTTTATAAACCAAAAAAGAAACCTGTGTATACTTGTTTTCTAATTCATTTGTTCAGGATCTTGTAACTGAAGTTCAATGCACTCTGTACACAACTCTGTCGGAATTCGATGGTAATGTTGAAGACGAGAATGGTTTAGAAAGTCTTATAGAAGTGCAGTTTGAAGCATTGCAGAAAGCGATGAAGGTGTCACACAAGGCAGCAGAAGCTCGTTTGAGAGTATCGAAGAAACTGCTTACTCTATTCAGGGCAGGTAAGCTTGGTCAATTCATCCTTGATGATGTCCCTATCACAAAAGTTTCTTAGGAAATTTATATTCTCCGTGTTTTGTTGAAAGGACTTTGCTTTAATGGTGATTTAATTAGTAGAGCTATTAGTTTGTATTTTGAATTGTCAACTTATTGTAATATATTGGTTTAGTTATCTTGGTTTGATTGTATTTGTTAGTTGATATTGGGAGGAAGTTGCTAGTTTTATGCAACCGAGAGTTGGAGATTTGCTCTACTGCATCCAGGGCACGAGTATCAATTTTTTTGTTGACATGTCGATATTCTACGTTTTTATGGAAAGATATTAGTTGGAAGGATTGATTTTTTATTATGTCAGTATAAATTGTATCAAAG

Coding sequence (CDS)

ACCTCCGTCGTCGTCGGAGAAAACACAGAAATGAGAGGGATCACCGGAGTCGTGAAGAAGGCTCTTGGAGACATGGAGTTCACTGCCGGCGGTGGAGCCATCAATTGGTTCCCCGGCCACATGGCTGCAGCCACTCGTGCCATTCGTCATAGACTGAAGCTCGCGGACATGGTCATCGAGGTCAGGGATTCCCGAATTCCCTTGTCCTCGGCCAATCAAGACCTCCAGCCTCATCTCGCTTCCAAACGCCGCGTCATTGCCCTCAACAAGAAAGATTTGGCTAACCCTAATATCATGAATAAATGGGTTAACTTTTTTGACTCATGCAATCAAGATTGCGTACCAATTAACGCTCACAGTAAGAGTTCTGTTCGGAAGCTTCTCGAGCTTGTGGAATTTAAACTGAAGGAAGCAATTTCAAGGGAACCTACTCTTCTTGTTATGGTCGTTGGTGTTCCGAATGTTGGGAAGTCGGCTTTAATTAATTCAATCCATCAAATTGCTTCTGAACGCTTTCCAGGAGAAAAGGAAGCGAGCTACTGTTGGTCCCTTGCCTGGGGTTACTCAAGATATAGCTGGCTACAAGATTGCTCATCAACCTAG

Protein sequence

TSVVVGENTEMRGITGVVKKALGDMEFTAGGGAINWFPGHMAAATRAIRHRLKLADMVIEVRDSRIPLSSANQDLQPHLASKRRVIALNKKDLANPNIMNKWVNFFDSCNQDCVPINAHSKSSVRKLLELVEFKLKEAISREPTLLVMVVGVPNVGKSALINSIHQIASERFPGEKEASYCWSLAWGYSRYSWLQDCSST

Homology

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BLAST of Cucsat.G5332.T3 vs. ExPASy Swiss-Prot
Match: Q8L607 (Short integuments 2, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=SIN2 PE=1 SV=1)

HSP 1 Score: 238.4 bits (607), Expect = 6.9e-62
Identity = 117/157 (74.52%), Postives = 135/157 (85.99%), Query Frame = 0


Query: 17  VVKKALGDMEFTAGGGAINWFPGHMAAATRAIRHRLKLADMVIEVRDSRIPLSSANQDLQ 76
           V K  +G M F    G INWFPGHMAAATRAIR+RLKL+D+VIEVRD+RIPLSSAN+DLQ
Sbjct: 9   VKKGLIGGMSFAKDAGKINWFPGHMAAATRAIRNRLKLSDLVIEVRDARIPLSSANEDLQ 68

Query: 77  PHLASKRRVIALNKKDLANPNIMNKWVNFFDSCNQDCVPINAHSKSSVRKLLELVEFKLK 136
             +++KRR+IALNKKDLANPN++NKW   F+S  QDC+ INAHS+SSV KLL+LVE KLK
Sbjct: 69  SQMSAKRRIIALNKKDLANPNVLNKWTRHFESSKQDCIAINAHSRSSVMKLLDLVELKLK 128

Query: 137 EAISREPTLLVMVVGVPNVGKSALINSIHQIASERFP 174
           E I+REPTLLVMVVGVPNVGKSALINSIHQIA+ RFP
Sbjct: 129 EVIAREPTLLVMVVGVPNVGKSALINSIHQIAAARFP 165

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BLAST of Cucsat.G5332.T3 vs. ExPASy Swiss-Prot
Match: B7GGD6 (Ribosome biogenesis GTPase A OS=Anoxybacillus flavithermus (strain DSM 21510 / WK1) OX=491915 GN=rbgA PE=3 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 7.4e-24
Identity = 55/139 (39.57%), Postives = 90/139 (64.75%), Query Frame = 0


Query: 34  INWFPGHMAAATRAIRHRLKLADMVIEVRDSRIPLSSANQDLQPHLASKRRVIALNKKDL 93
           I WFPGHMA A R +  +LKL D+V E+ D+RIP+SS N  +   +A+K R+I LNK D+
Sbjct: 6   IQWFPGHMAKAKREVTEKLKLIDIVFELVDARIPMSSRNPLIDEIVANKPRIILLNKADM 65

Query: 94  ANPNIMNKWVNFFDSCNQDCVPINAHSKSSVRKLLELVEFKLK--------EAISREPTL 153
           A+P++  +WV+FF +   D + I++ S + V++++ + + KL+        + + R   +
Sbjct: 66  ADPDVTKQWVDFFAAQQIDAIAIDSQSGTGVKQMVAVAKEKLRSKFEKMMAKGMKRPRAM 125

Query: 154 LVMVVGVPNVGKSALINSI 165
             ++VG+PNVGKS LIN +
Sbjct: 126 RALIVGIPNVGKSTLINRL 144

[Close]

BLAST of Cucsat.G5332.T3 vs. ExPASy Swiss-Prot
Match: O82497 (DAR GTPase 2, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=DGP2 PE=3 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 9.1e-22
Identity = 60/137 (43.80%), Postives = 90/137 (65.69%), Query Frame = 0


Query: 36  WFPGHMAAATRAIRHRLKLADMVIEVRDSRIPLSSANQDLQPH--LASKRRVIALNKKDL 95
           W+  HMAAA RAI  R+ L D V+E+RD+RIPLSS  + L+    L SK R+I LNK +L
Sbjct: 28  WYGPHMAAAVRAISERIPLVDFVLEIRDARIPLSSEYELLRKFSPLPSK-RIIVLNKMEL 87

Query: 96  ANPNIMNKWVNFFDSCNQDCVPINAHSKSSVRKLLELVEFKLKE---AISREPTLLVMVV 155
           A+P  + K +++F+  N     +N+H+K  V++LL  ++ +++E   A     T  +M++
Sbjct: 88  ADPLELKKCIDYFEERNYLSYAVNSHNKDCVKQLLNFLQSQVRELHKAGHSGHTTTMMLL 147

Query: 156 GVPNVGKSALINSIHQI 168
           G+PNVGKSAL NS+H I
Sbjct: 148 GIPNVGKSALSNSLHHI 163

[Close]

BLAST of Cucsat.G5332.T3 vs. ExPASy Swiss-Prot
Match: C5D8U8 (Ribosome biogenesis GTPase A OS=Geobacillus sp. (strain WCH70) OX=471223 GN=rbgA PE=3 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 2.6e-21
Identity = 51/139 (36.69%), Postives = 83/139 (59.71%), Query Frame = 0


Query: 34  INWFPGHMAAATRAIRHRLKLADMVIEVRDSRIPLSSANQDLQPHLASKRRVIALNKKDL 93
           I WFPGHMA A R ++ +LKL D+V E+ D+RIPLSS N  +   L +K R++ LNK D+
Sbjct: 5   IQWFPGHMAKAKREVQEKLKLIDIVFELLDARIPLSSRNPMIHEILGNKPRIVLLNKADM 64

Query: 94  ANPNIMNKWVNFFDSCNQDCVPINAHSKSSVRKLLELVEFKLKE--------AISREPTL 153
           A+  +  +W+ +F+      + I+A + + +R+++   +  LK+         I     +
Sbjct: 65  ADETVTEQWIAYFERQQLHALAIDAQTGTGIRQIVSAAKEMLKDKFAKMAAKGIKNPRPM 124

Query: 154 LVMVVGVPNVGKSALINSI 165
             ++VG+PNVGKS LIN +
Sbjct: 125 RALIVGIPNVGKSTLINRL 143

[Close]

BLAST of Cucsat.G5332.T3 vs. ExPASy Swiss-Prot
Match: Q819W8 (Ribosome biogenesis GTPase A OS=Bacillus cereus (strain ATCC 14579 / DSM 31 / JCM 2152 / NBRC 15305 / NCIMB 9373 / NRRL B-3711) OX=226900 GN=rbgA PE=3 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 2.2e-20
Identity = 50/138 (36.23%), Postives = 79/138 (57.25%), Query Frame = 0


Query: 34  INWFPGHMAAATRAIRHRLKLADMVIEVRDSRIPLSSANQDLQPHLASKRRVIALNKKDL 93
           I WFPGHMA A R +  +LKL D+VIE+ D+R+PLSS N  +   +  K R++ LNK D+
Sbjct: 3   IQWFPGHMAKARRQVTEKLKLIDVVIELVDARLPLSSRNPMIDEIITHKPRLVVLNKADM 62

Query: 94  ANPNIMNKWVNFFDSCNQDCVPINAHSKSSVRKLLELVEFKLKEAIS-------REPTLL 153
           A+  +  +W+ +F       + INA +   ++++    +  +KE          R   + 
Sbjct: 63  ADDRLTKQWIAYFKEKGHMAISINAQAGQGMKEIAAACKVLVKEKFDKMVAKGIRPRAIR 122

Query: 154 VMVVGVPNVGKSALINSI 165
            ++VG+PNVGKS LIN +
Sbjct: 123 ALIVGIPNVGKSTLINKL 140

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BLAST of Cucsat.G5332.T3 vs. NCBI nr
Match: XP_031740287.1 (short integuments 2, mitochondrial isoform X2 [Cucumis sativus])

HSP 1 Score: 321 bits (823), Expect = 1.76e-107
Identity = 164/168 (97.62%), Postives = 167/168 (99.40%), Query Frame = 0


Query: 10  EMRGITGVVKKALGDMEFTAGGGAINWFPGHMAAATRAIRHRLKLADMVIEVRDSRIPLS 69
           EMRGITGVVKKALGDMEFTAGGGAINWFPGHMAAATRAIRHRLKLADMVIEVRDSRIPLS
Sbjct: 15  EMRGITGVVKKALGDMEFTAGGGAINWFPGHMAAATRAIRHRLKLADMVIEVRDSRIPLS 74

Query: 70  SANQDLQPHLASKRRVIALNKKDLANPNIMNKWVNFFDSCNQDCVPINAHSKSSVRKLLE 129
           SANQDLQPHLASKRRVIALNKKDLANPNIMNKWVNFFDSCNQDCVPINAHSKSSVRKLLE
Sbjct: 75  SANQDLQPHLASKRRVIALNKKDLANPNIMNKWVNFFDSCNQDCVPINAHSKSSVRKLLE 134

Query: 130 LVEFKLKEAISREPTLLVMVVGVPNVGKSALINSIHQIASERFPGEKE 177
           LVEFKLKEAISREPTLLVMVVGVPNVGKSALINSIHQIASERFP +++
Sbjct: 135 LVEFKLKEAISREPTLLVMVVGVPNVGKSALINSIHQIASERFPVQEK 182

[Close]

BLAST of Cucsat.G5332.T3 vs. NCBI nr
Match: XP_004149387.2 (short integuments 2, mitochondrial isoform X1 [Cucumis sativus])

HSP 1 Score: 321 bits (823), Expect = 1.36e-106
Identity = 164/168 (97.62%), Postives = 167/168 (99.40%), Query Frame = 0


Query: 10  EMRGITGVVKKALGDMEFTAGGGAINWFPGHMAAATRAIRHRLKLADMVIEVRDSRIPLS 69
           EMRGITGVVKKALGDMEFTAGGGAINWFPGHMAAATRAIRHRLKLADMVIEVRDSRIPLS
Sbjct: 15  EMRGITGVVKKALGDMEFTAGGGAINWFPGHMAAATRAIRHRLKLADMVIEVRDSRIPLS 74

Query: 70  SANQDLQPHLASKRRVIALNKKDLANPNIMNKWVNFFDSCNQDCVPINAHSKSSVRKLLE 129
           SANQDLQPHLASKRRVIALNKKDLANPNIMNKWVNFFDSCNQDCVPINAHSKSSVRKLLE
Sbjct: 75  SANQDLQPHLASKRRVIALNKKDLANPNIMNKWVNFFDSCNQDCVPINAHSKSSVRKLLE 134

Query: 130 LVEFKLKEAISREPTLLVMVVGVPNVGKSALINSIHQIASERFPGEKE 177
           LVEFKLKEAISREPTLLVMVVGVPNVGKSALINSIHQIASERFP +++
Sbjct: 135 LVEFKLKEAISREPTLLVMVVGVPNVGKSALINSIHQIASERFPVQEK 182

[Close]

BLAST of Cucsat.G5332.T3 vs. NCBI nr
Match: XP_038883550.1 (short integuments 2, mitochondrial isoform X1 [Benincasa hispida])

HSP 1 Score: 311 bits (798), Expect = 5.05e-103
Identity = 157/167 (94.01%), Postives = 165/167 (98.80%), Query Frame = 0


Query: 11  MRGITGVVKKALGDMEFTAGGGAINWFPGHMAAATRAIRHRLKLADMVIEVRDSRIPLSS 70
           MRGI GVVKKALGDMEFTAGGGA+NWFPGHMAAATRAIRHRLKLADMVIEVRDSRIPLSS
Sbjct: 1   MRGINGVVKKALGDMEFTAGGGAVNWFPGHMAAATRAIRHRLKLADMVIEVRDSRIPLSS 60

Query: 71  ANQDLQPHLASKRRVIALNKKDLANPNIMNKWVNFFDSCNQDCVPINAHSKSSVRKLLEL 130
           ANQDLQPHL+SKRRVIALNKKDLANPNIM+KWV+FFDSCNQDC+PINAHSKSSVRKLLEL
Sbjct: 61  ANQDLQPHLSSKRRVIALNKKDLANPNIMHKWVHFFDSCNQDCIPINAHSKSSVRKLLEL 120

Query: 131 VEFKLKEAISREPTLLVMVVGVPNVGKSALINSIHQIASERFPGEKE 177
           VEFKLKEAISREPTLLVMVVGVPNVGKSALINSIHQIASERFP +++
Sbjct: 121 VEFKLKEAISREPTLLVMVVGVPNVGKSALINSIHQIASERFPVQEK 167

[Close]

BLAST of Cucsat.G5332.T3 vs. NCBI nr
Match: KAE8649358.1 (hypothetical protein Csa_019164 [Cucumis sativus])

HSP 1 Score: 321 bits (823), Expect = 1.32e-101
Identity = 164/168 (97.62%), Postives = 167/168 (99.40%), Query Frame = 0


Query: 10  EMRGITGVVKKALGDMEFTAGGGAINWFPGHMAAATRAIRHRLKLADMVIEVRDSRIPLS 69
           EMRGITGVVKKALGDMEFTAGGGAINWFPGHMAAATRAIRHRLKLADMVIEVRDSRIPLS
Sbjct: 15  EMRGITGVVKKALGDMEFTAGGGAINWFPGHMAAATRAIRHRLKLADMVIEVRDSRIPLS 74

Query: 70  SANQDLQPHLASKRRVIALNKKDLANPNIMNKWVNFFDSCNQDCVPINAHSKSSVRKLLE 129
           SANQDLQPHLASKRRVIALNKKDLANPNIMNKWVNFFDSCNQDCVPINAHSKSSVRKLLE
Sbjct: 75  SANQDLQPHLASKRRVIALNKKDLANPNIMNKWVNFFDSCNQDCVPINAHSKSSVRKLLE 134

Query: 130 LVEFKLKEAISREPTLLVMVVGVPNVGKSALINSIHQIASERFPGEKE 177
           LVEFKLKEAISREPTLLVMVVGVPNVGKSALINSIHQIASERFP +++
Sbjct: 135 LVEFKLKEAISREPTLLVMVVGVPNVGKSALINSIHQIASERFPVQEK 182

[Close]

BLAST of Cucsat.G5332.T3 vs. NCBI nr
Match: TYK11088.1 (short integuments 2 [Cucumis melo var. makuwa])

HSP 1 Score: 307 bits (787), Expect = 2.13e-101
Identity = 156/167 (93.41%), Postives = 163/167 (97.60%), Query Frame = 0


Query: 11  MRGITGVVKKALGDMEFTAGGGAINWFPGHMAAATRAIRHRLKLADMVIEVRDSRIPLSS 70
           MRGI GV+KKALGDMEFTAGGGAINWFPGHMAAA RAIRHRLKLADMVIEVRDSRIPLSS
Sbjct: 1   MRGINGVMKKALGDMEFTAGGGAINWFPGHMAAAIRAIRHRLKLADMVIEVRDSRIPLSS 60

Query: 71  ANQDLQPHLASKRRVIALNKKDLANPNIMNKWVNFFDSCNQDCVPINAHSKSSVRKLLEL 130
           ANQDLQPHL+SKRRVIALNKKDLAN NIMNKWV+FFDSCNQDC+PINAHSKSSVRKLLEL
Sbjct: 61  ANQDLQPHLSSKRRVIALNKKDLANSNIMNKWVDFFDSCNQDCIPINAHSKSSVRKLLEL 120

Query: 131 VEFKLKEAISREPTLLVMVVGVPNVGKSALINSIHQIASERFPGEKE 177
           VEFKLKEAISREPTLLVMVVGVPNVGKSALINSIHQIASERFP +++
Sbjct: 121 VEFKLKEAISREPTLLVMVVGVPNVGKSALINSIHQIASERFPVQEK 167

[Close]

BLAST of Cucsat.G5332.T3 vs. ExPASy TrEMBL
Match: A0A0A0L141 (G domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G168980 PE=4 SV=1)

HSP 1 Score: 321 bits (823), Expect = 6.74e-108
Identity = 164/168 (97.62%), Postives = 167/168 (99.40%), Query Frame = 0


Query: 10  EMRGITGVVKKALGDMEFTAGGGAINWFPGHMAAATRAIRHRLKLADMVIEVRDSRIPLS 69
           EMRGITGVVKKALGDMEFTAGGGAINWFPGHMAAATRAIRHRLKLADMVIEVRDSRIPLS
Sbjct: 15  EMRGITGVVKKALGDMEFTAGGGAINWFPGHMAAATRAIRHRLKLADMVIEVRDSRIPLS 74

Query: 70  SANQDLQPHLASKRRVIALNKKDLANPNIMNKWVNFFDSCNQDCVPINAHSKSSVRKLLE 129
           SANQDLQPHLASKRRVIALNKKDLANPNIMNKWVNFFDSCNQDCVPINAHSKSSVRKLLE
Sbjct: 75  SANQDLQPHLASKRRVIALNKKDLANPNIMNKWVNFFDSCNQDCVPINAHSKSSVRKLLE 134

Query: 130 LVEFKLKEAISREPTLLVMVVGVPNVGKSALINSIHQIASERFPGEKE 177
           LVEFKLKEAISREPTLLVMVVGVPNVGKSALINSIHQIASERFP +++
Sbjct: 135 LVEFKLKEAISREPTLLVMVVGVPNVGKSALINSIHQIASERFPVQEK 182

[Close]

BLAST of Cucsat.G5332.T3 vs. ExPASy TrEMBL
Match: A0A5D3CIR7 (Short integuments 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold73G00780 PE=4 SV=1)

HSP 1 Score: 307 bits (787), Expect = 1.03e-101
Identity = 156/167 (93.41%), Postives = 163/167 (97.60%), Query Frame = 0


Query: 11  MRGITGVVKKALGDMEFTAGGGAINWFPGHMAAATRAIRHRLKLADMVIEVRDSRIPLSS 70
           MRGI GV+KKALGDMEFTAGGGAINWFPGHMAAA RAIRHRLKLADMVIEVRDSRIPLSS
Sbjct: 1   MRGINGVMKKALGDMEFTAGGGAINWFPGHMAAAIRAIRHRLKLADMVIEVRDSRIPLSS 60

Query: 71  ANQDLQPHLASKRRVIALNKKDLANPNIMNKWVNFFDSCNQDCVPINAHSKSSVRKLLEL 130
           ANQDLQPHL+SKRRVIALNKKDLAN NIMNKWV+FFDSCNQDC+PINAHSKSSVRKLLEL
Sbjct: 61  ANQDLQPHLSSKRRVIALNKKDLANSNIMNKWVDFFDSCNQDCIPINAHSKSSVRKLLEL 120

Query: 131 VEFKLKEAISREPTLLVMVVGVPNVGKSALINSIHQIASERFPGEKE 177
           VEFKLKEAISREPTLLVMVVGVPNVGKSALINSIHQIASERFP +++
Sbjct: 121 VEFKLKEAISREPTLLVMVVGVPNVGKSALINSIHQIASERFPVQEK 167

[Close]

BLAST of Cucsat.G5332.T3 vs. ExPASy TrEMBL
Match: A0A1S3CEC4 (short integuments 2, mitochondrial isoform X1 OS=Cucumis melo OX=3656 GN=LOC103499512 PE=4 SV=1)

HSP 1 Score: 307 bits (787), Expect = 1.17e-101
Identity = 156/167 (93.41%), Postives = 163/167 (97.60%), Query Frame = 0


Query: 11  MRGITGVVKKALGDMEFTAGGGAINWFPGHMAAATRAIRHRLKLADMVIEVRDSRIPLSS 70
           MRGI GV+KKALGDMEFTAGGGAINWFPGHMAAA RAIRHRLKLADMVIEVRDSRIPLSS
Sbjct: 1   MRGINGVMKKALGDMEFTAGGGAINWFPGHMAAAIRAIRHRLKLADMVIEVRDSRIPLSS 60

Query: 71  ANQDLQPHLASKRRVIALNKKDLANPNIMNKWVNFFDSCNQDCVPINAHSKSSVRKLLEL 130
           ANQDLQPHL+SKRRVIALNKKDLAN NIMNKWV+FFDSCNQDC+PINAHSKSSVRKLLEL
Sbjct: 61  ANQDLQPHLSSKRRVIALNKKDLANSNIMNKWVDFFDSCNQDCIPINAHSKSSVRKLLEL 120

Query: 131 VEFKLKEAISREPTLLVMVVGVPNVGKSALINSIHQIASERFPGEKE 177
           VEFKLKEAISREPTLLVMVVGVPNVGKSALINSIHQIASERFP +++
Sbjct: 121 VEFKLKEAISREPTLLVMVVGVPNVGKSALINSIHQIASERFPVQEK 167

[Close]

BLAST of Cucsat.G5332.T3 vs. ExPASy TrEMBL
Match: A0A5A7ULU0 (Short integuments 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold697G00560 PE=4 SV=1)

HSP 1 Score: 307 bits (787), Expect = 1.21e-101
Identity = 156/167 (93.41%), Postives = 163/167 (97.60%), Query Frame = 0


Query: 11  MRGITGVVKKALGDMEFTAGGGAINWFPGHMAAATRAIRHRLKLADMVIEVRDSRIPLSS 70
           MRGI GV+KKALGDMEFTAGGGAINWFPGHMAAA RAIRHRLKLADMVIEVRDSRIPLSS
Sbjct: 1   MRGINGVMKKALGDMEFTAGGGAINWFPGHMAAAIRAIRHRLKLADMVIEVRDSRIPLSS 60

Query: 71  ANQDLQPHLASKRRVIALNKKDLANPNIMNKWVNFFDSCNQDCVPINAHSKSSVRKLLEL 130
           ANQDLQPHL+SKRRVIALNKKDLAN NIMNKWV+FFDSCNQDC+PINAHSKSSVRKLLEL
Sbjct: 61  ANQDLQPHLSSKRRVIALNKKDLANSNIMNKWVDFFDSCNQDCIPINAHSKSSVRKLLEL 120

Query: 131 VEFKLKEAISREPTLLVMVVGVPNVGKSALINSIHQIASERFPGEKE 177
           VEFKLKEAISREPTLLVMVVGVPNVGKSALINSIHQIASERFP +++
Sbjct: 121 VEFKLKEAISREPTLLVMVVGVPNVGKSALINSIHQIASERFPVQEK 167

[Close]

BLAST of Cucsat.G5332.T3 vs. ExPASy TrEMBL
Match: A0A6J1A619 (short integuments 2, mitochondrial isoform X2 OS=Herrania umbratica OX=108875 GN=LOC110415182 PE=4 SV=1)

HSP 1 Score: 292 bits (748), Expect = 2.15e-98
Identity = 145/190 (76.32%), Postives = 165/190 (86.84%), Query Frame = 0


Query: 13  GITGVVKKALG--DMEFTAGGGAINWFPGHMAAATRAIRHRLKLADMVIEVRDSRIPLSS 72
           GI G+ KK +G  +M F   GG INWFPGHMAAATRAIR+RLKL+D+ IEVRD+RIP SS
Sbjct: 2   GIKGIAKKVVGVGEMGFNKEGGVINWFPGHMAAATRAIRNRLKLSDLAIEVRDARIPFSS 61

Query: 73  ANQDLQPHLASKRRVIALNKKDLANPNIMNKWVNFFDSCNQDCVPINAHSKSSVRKLLEL 132
           A+QDLQPHL++KRR+IALNKKDLAN N++NKWV +FDSC QDC+PINAHS+SSVRKLLEL
Sbjct: 62  AHQDLQPHLSAKRRIIALNKKDLANSNVLNKWVRYFDSCKQDCLPINAHSRSSVRKLLEL 121

Query: 133 VEFKLKEAISREPTLLVMVVGVPNVGKSALINSIHQIASERFPGEKEASYCWSLAWGYSR 192
           VEFKLKE ISREPTLLVMVVGVPNVGKSALINSIHQIAS RFPG+ E S+C  +A  Y R
Sbjct: 122 VEFKLKEVISREPTLLVMVVGVPNVGKSALINSIHQIASTRFPGKDETSHCGPIARCYPR 181

Query: 193 YSWLQDCSST 200
           Y W+QDCSST
Sbjct: 182 YCWVQDCSST 191

[Close]

BLAST of Cucsat.G5332.T3 vs. TAIR 10
Match: AT2G41670.1 (P-loop containing nucleoside triphosphate hydrolases superfamily protein )

HSP 1 Score: 238.4 bits (607), Expect = 4.9e-63
Identity = 117/157 (74.52%), Postives = 135/157 (85.99%), Query Frame = 0


Query: 17  VVKKALGDMEFTAGGGAINWFPGHMAAATRAIRHRLKLADMVIEVRDSRIPLSSANQDLQ 76
           V K  +G M F    G INWFPGHMAAATRAIR+RLKL+D+VIEVRD+RIPLSSAN+DLQ
Sbjct: 9   VKKGLIGGMSFAKDAGKINWFPGHMAAATRAIRNRLKLSDLVIEVRDARIPLSSANEDLQ 68

Query: 77  PHLASKRRVIALNKKDLANPNIMNKWVNFFDSCNQDCVPINAHSKSSVRKLLELVEFKLK 136
             +++KRR+IALNKKDLANPN++NKW   F+S  QDC+ INAHS+SSV KLL+LVE KLK
Sbjct: 69  SQMSAKRRIIALNKKDLANPNVLNKWTRHFESSKQDCIAINAHSRSSVMKLLDLVELKLK 128

Query: 137 EAISREPTLLVMVVGVPNVGKSALINSIHQIASERFP 174
           E I+REPTLLVMVVGVPNVGKSALINSIHQIA+ RFP
Sbjct: 129 EVIAREPTLLVMVVGVPNVGKSALINSIHQIAAARFP 165

[Close]

BLAST of Cucsat.G5332.T3 vs. TAIR 10
Match: AT4G10650.1 (P-loop containing nucleoside triphosphate hydrolases superfamily protein )

HSP 1 Score: 105.1 bits (261), Expect = 6.5e-23
Identity = 60/137 (43.80%), Postives = 90/137 (65.69%), Query Frame = 0


Query: 36  WFPGHMAAATRAIRHRLKLADMVIEVRDSRIPLSSANQDLQPH--LASKRRVIALNKKDL 95
           W+  HMAAA RAI  R+ L D V+E+RD+RIPLSS  + L+    L SK R+I LNK +L
Sbjct: 28  WYGPHMAAAVRAISERIPLVDFVLEIRDARIPLSSEYELLRKFSPLPSK-RIIVLNKMEL 87

Query: 96  ANPNIMNKWVNFFDSCNQDCVPINAHSKSSVRKLLELVEFKLKE---AISREPTLLVMVV 155
           A+P  + K +++F+  N     +N+H+K  V++LL  ++ +++E   A     T  +M++
Sbjct: 88  ADPLELKKCIDYFEERNYLSYAVNSHNKDCVKQLLNFLQSQVRELHKAGHSGHTTTMMLL 147

Query: 156 GVPNVGKSALINSIHQI 168
           G+PNVGKSAL NS+H I
Sbjct: 148 GIPNVGKSALSNSLHHI 163

[Close]

BLAST of Cucsat.G5332.T3 vs. TAIR 10
Match: AT4G02790.1 (GTP-binding family protein )

HSP 1 Score: 83.6 bits (205), Expect = 2.0e-16
Identity = 45/138 (32.61%), Postives = 75/138 (54.35%), Query Frame = 0


Query: 34  INWFPGHMAAATRAIRHRLKLADMVIEVRDSRIPLSSANQDLQPHLASKRRVIALNKKDL 93
           + W+PGH+    + +R +LKL D+VIEVRD+RIPLS+ +  +   L +++R++ LN++D+
Sbjct: 96  VQWYPGHIMKTEKELREQLKLMDVVIEVRDARIPLSTTHPKMDAWLGNRKRILVLNREDM 155

Query: 94  ANPNIMNKWVNFFDSCNQDCVPINAHSKSSVRKLLEL-------VEFKLKEAISREPTLL 153
            + +  N W  +F       +  N        KL  L       V  K +E      ++ 
Sbjct: 156 ISNDDRNDWARYFAKQGIKVIFTNGKLGMGAMKLGRLAKSLAGDVNGKRREKGLLPRSVR 215

Query: 154 VMVVGVPNVGKSALINSI 165
             ++G PNVGKS+LIN +
Sbjct: 216 AGIIGYPNVGKSSLINRL 233

[Close]

BLAST of Cucsat.G5332.T3 vs. TAIR 10
Match: AT3G07050.1 (GTP-binding family protein )

HSP 1 Score: 43.9 bits (102), Expect = 1.8e-04
Identity = 40/140 (28.57%), Postives = 68/140 (48.57%), Query Frame = 0


Query: 52  LKLADMVIEVRDSRIPLSSANQDLQPHL----ASKRRVIALNKKDLANPNIMNKWVNFFD 111
           ++L+D+++EV D+R PL +   D++  +     +K  V+ LNK DL       KW+ +  
Sbjct: 134 IELSDVILEVLDARDPLGTRCTDMERMVMQAGPNKHLVLLLNKIDLVPREAAEKWLMYLR 193

Query: 112 --------SCNQDCVPINAHSKSS----VRKLLELVE-------FKLKEAISR----EPT 165
                    C+      N   KSS       +L+  +        KL +  SR    + +
Sbjct: 194 EEFPAVAFKCSTQEQRSNLGWKSSKASKPSNMLQTSDCLGADTLIKLLKNYSRSHELKKS 253

The following BLAST results are available for this feature:

BLAST of Cucsat.G5332.T3 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8L607	6.9e-62	74.52	Short integuments 2, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=SIN2 PE=1 ...	[more]
B7GGD6	7.4e-24	39.57	Ribosome biogenesis GTPase A OS=Anoxybacillus flavithermus (strain DSM 21510 / W...	[more]
O82497	9.1e-22	43.80	DAR GTPase 2, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=DGP2 PE=3 SV=1	[more]
C5D8U8	2.6e-21	36.69	Ribosome biogenesis GTPase A OS=Geobacillus sp. (strain WCH70) OX=471223 GN=rbgA...	[more]
Q819W8	2.2e-20	36.23	Ribosome biogenesis GTPase A OS=Bacillus cereus (strain ATCC 14579 / DSM 31 / JC...	[more]

BLAST of Cucsat.G5332.T3 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_031740287.1	1.76e-107	97.62	short integuments 2, mitochondrial isoform X2 [Cucumis sativus]	[more]
XP_004149387.2	1.36e-106	97.62	short integuments 2, mitochondrial isoform X1 [Cucumis sativus]	[more]
XP_038883550.1	5.05e-103	94.01	short integuments 2, mitochondrial isoform X1 [Benincasa hispida]	[more]
KAE8649358.1	1.32e-101	97.62	hypothetical protein Csa_019164 [Cucumis sativus]	[more]
TYK11088.1	2.13e-101	93.41	short integuments 2 [Cucumis melo var. makuwa]	[more]

BLAST of Cucsat.G5332.T3 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L141	6.74e-108	97.62	G domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G168980 PE=4 SV=1	[more]
A0A5D3CIR7	1.03e-101	93.41	Short integuments 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold73G0...	[more]
A0A1S3CEC4	1.17e-101	93.41	short integuments 2, mitochondrial isoform X1 OS=Cucumis melo OX=3656 GN=LOC1034...	[more]
A0A5A7ULU0	1.21e-101	93.41	Short integuments 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold697G...	[more]
A0A6J1A619	2.15e-98	76.32	short integuments 2, mitochondrial isoform X2 OS=Herrania umbratica OX=108875 GN...	[more]

BLAST of Cucsat.G5332.T3 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G41670.1	4.9e-63	74.52	P-loop containing nucleoside triphosphate hydrolases superfamily protein	[more]
AT4G10650.1	6.5e-23	43.80	P-loop containing nucleoside triphosphate hydrolases superfamily protein	[more]
AT4G02790.1	2.0e-16	32.61	GTP-binding family protein	[more]
AT3G07050.1	1.8e-04	28.57	GTP-binding family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (B10) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR027417	P-loop containing nucleoside triphosphate hydrolase	GENE3D	3.40.50.300		coord: 34..180 e-value: 2.5E-29 score: 104.2
IPR027417	P-loop containing nucleoside triphosphate hydrolase	SUPERFAMILY	52540	P-loop containing nucleoside triphosphate hydrolases	coord: 40..165
None	No IPR available	PANTHER	PTHR45782:SF7	SHORT INTEGUMENTS 2, MITOCHONDRIAL-LIKE	coord: 33..176
None	No IPR available	PANTHER	PTHR45782	MITOCHONDRIAL RIBOSOME-ASSOCIATED GTPASE 1	coord: 33..176
None	No IPR available	CDD	cd01856	YlqF	coord: 36..171 e-value: 5.97003E-59 score: 180.802

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cucsat.G5332	Cucsat.G5332	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cucsat.G5332.T3.E1	Cucsat.G5332.T3.E1	exon
Cucsat.G5332.T3.E2	Cucsat.G5332.T3.E2	exon
Cucsat.G5332.T3.E3	Cucsat.G5332.T3.E3	exon
Cucsat.G5332.T3.E4	Cucsat.G5332.T3.E4	exon
Cucsat.G5332.T3.E5	Cucsat.G5332.T3.E5	exon
Cucsat.G5332.T3.E6	Cucsat.G5332.T3.E6	exon
Cucsat.G5332.T3.E7	Cucsat.G5332.T3.E7	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cucsat.G5332.T3.C1	Cucsat.G5332.T3.C1	CDS
Cucsat.G5332.T3.C2	Cucsat.G5332.T3.C2	CDS
Cucsat.G5332.T3.C3	Cucsat.G5332.T3.C3	CDS
Cucsat.G5332.T3.C4	Cucsat.G5332.T3.C4	CDS
Cucsat.G5332.T3.C5	Cucsat.G5332.T3.C5	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cucsat.G5332.T3	Cucsat.G5332.T3-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000911	cytokinesis by cell plate formation
biological_process	GO:0048481	plant ovule development
cellular_component	GO:0005743	mitochondrial inner membrane
cellular_component	GO:0005739	mitochondrion
cellular_component	GO:0009536	plastid
molecular_function	GO:0003924	GTPase activity
molecular_function	GO:0005525	GTP binding
molecular_function	GO:0016787	hydrolase activity