Cucsat.G5187.T1 (mRNA) Cucumber (B10) v3

Overview
NameCucsat.G5187.T1
TypemRNA
OrganismCucumis sativus L. var. sativus cv B10 (Cucumber (B10) v3)
Descriptionprotein LAX PANICLE 2-like
Locationctg1227: 5299670 .. 5302262 (-)
RNA-Seq ExpressionCucsat.G5187.T1
SyntenyCucsat.G5187.T1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
GGGAATAAGGGATTTTATGCTTCAACATCAAAGCAAGAAAAAGCACTTCCATAGTGATTATTCTTCAATAATCACCAACTCTGCTGGTTTGTGGTTTTCACTACTCTCTTCACCCAACAGGTCAAACTTATAAACTCTTTTCTTCTCCTTCTTTTTCCTTGATCTATCATCTTCAAAAAAAAGAAAAAAAAGCTTTGATTTTCTTTCCCCAATGAATTTTGTAGAGTTTTTTTTTTTTGTTACAACATAAATAAATAACTAATGAATGTTTATATTGTTATATAACAGTTGATTAAACTTCTTTTTTTTTTTTTTCGAAATCGATAGAACGTATTTTGATGTATTATGAAGTTTTTTTTAAGTAAATGTAAGATTATTGTAATTATTAATATAATTTGAATTTGAAATGTGGTAGGAAGGGAGGAGCAGCACTGCCTCAGATACCCAAACCCTACATTAGAGTCAAGTAAGTGACAACATTCAAAACACACTATCAAATCATACAAACTTTTCAAATTTCCCAGTTTTTTGTGTACTGATTGTTGTTTTTATTTTTAAAACCTTTCTTAAATATTATAGAATATATATATCAAAGATGCAAGCGTAATTATCTACATAAGTTGACTAACTTAAATGTTGATTGAAATGCTATTGAGTGGGTAAAGTACTCTTGTTTAGAAAGACATATTTTCAGAAATTTAAAATTAAATAATGATTTCTTTTCCAAAAAACAAATAAACATTACAACCAATCCATTAAAACTCAAAACTAATTAATTTTTATATCCATTTAAACTCTCTTGAACTTTCCTAAGGAAATCAATCTAGACTTTTTTTTTTCTTTTTCTTTTTTGAGATTTAATTTATAGTTGATTTTCACATGATTATATTTAAGATAACTACCTCAAACTCACCACAATACCATTATCTTTCTCTTAAAAGTCCTCCAAAATAGTAAACTATATTGTCACGTAATTCTTTTTAAAGAAGTATATCAAAAAAATAGTGAAAATGAAAAGTTAAACAGTTCACTCAGATATTACATTATAGTAAAGTTGTTGCTATCAATATAGTTGATAGCAATTTTCTCGGCTTTAAATTACTGATCAAAAGAACTAGAGTTGGAGGGTATATAGTTTTTTTTTTCAATGTGATTTTTTTATTAAAAGAAATAATAAAGTTTGACCTGAGAAGAAAAACTAGAGTTGGGATTGCAAATAATAATAATAATATATTCGTTGTATGTATTTGGTCTGAAATCAAATGATGAGAGGATGCAGTGAGAAAAGGAAAGCCTGAGTTATGGATTTTGGTGAAAAACTGTTTAGGGATGAGAAGATGACAGTGTTGATGGTGAAGAAGTACCTGCTCACAAAGCTGGGTCTCTCCAATCAAGCTGAGGTAACAAAACGCAAAACTATCTCATTATTTCTTTCAAATAAACTTAAAGTAAAAGAAAAGATTATTACCTATCACATATTTACTAAATTGTCCAATTATAAATATTACGTACTAAATTTGTTTAGCTTTATCAGATTGGAAGAGATAAATGAAAGATTGGTGGATCTTGAAATTCATTCAAAACTTTATTCTCAAATCATACATTATTATATCTTTTATATTATGATGCTCTCTAGTTTTCTTTTTATTGAAATGCCTACTCTAGCTTTTTCTTTTATTTTATGGAAATGTCTTTTATGAAAAAAATAATAATAAATAATGATGATGAATAATGTGAAAAAGGTAATACACATTTCACATGTCAATATTTTCATTAATATCTACACATTTTTTGAATTCAATGTTGTGAACCAATATTAGAAAAACCTACAAAAACTCAAAAAAGAATTATCAAAATGTTATTGATACAAATATAATATAATATAAATAATAAGGTAAGTTTATTAATTTAAAAATATCAAATATTTATTTATTTTTTAATTTAATTTTTTTTATATAATTTTGTTTAAAATATCCATCAAAATTACACCTTGATAATTTTTTAAACCTTTTGACTACAACTTAGATCAGATGTAACATTTTCAATTACAAATGAATAGTTCTTTAAAAAAATATTTTTTTAAAATATAATATTTATCACATCACAACTTTGTAATTAGATTGTGCAGAGAGTGAGGTGTGATACATCAAAGTATTTATCATATGAAAAATGTTTTCAAATATTAAAAAAGAAATCATCTGGTTCAAAAGTAAACATGCATGGCTTAAAAGTGATTAATTAATTCCGTGCTATTACTAGTTTTTTTTTTAATATTCATTCTCTCTCTAATAATTACAAAATCAGAAGTGGTTTTGAAAAAATAAAGTAAGAGATGAAGCATGCATGAGATGTCTCACTCAAATGTCTTAGTGAGTGAGAGTGAGTGTGTTGGGATATGATGCATGCAAAATATTGGAAATGAATCAGTAAAGAAGAGATAGAGAGAGGGTAATGATGAATTGAGGGGTTCATTTACTTATTTATTTAATTTTCTTACTCATTTTTAAAGTTCTGCTGGTTTTGTGAAGGTTGAATTATGGTGCATGGGAGAGAGACTGTTGCATACTCAATCACTAAAGCAAGTGAGAGATGG

Coding sequence (CDS)

GGAATAAGGGATTTTATGCTTCAACATCAAAGCAAGAAAAAGCACTTCCATAGTGATTATTCTTCAATAATCACCAACTCTGCTGGTTTGTGGTTTTCACTACTCTCTTCACCCAACAGGAAGGGAGGAGCAGCACTGCCTCAGATACCCAAACCCTACATTAGAGTCAAGGATGAGAAGATGACAGTGTTGATGGTGAAGAAGTACCTGCTCACAAAGCTGGGTCTCTCCAATCAAGCTGAGGTTGAATTATGGTGCATGGGAGAGAGACTGTTGCATACTCAATCACTAAAGCAAGTGAGAGAT

Protein sequence

GIRDFMLQHQSKKKHFHSDYSSIITNSAGLWFSLLSSPNRKGGAALPQIPKPYIRVKDEKMTVLMVKKYLLTKLGLSNQAEVELWCMGERLLHTQSLKQVRD
Homology
[Close]
BLAST of Cucsat.G5187.T1 vs. ExPASy Swiss-Prot
Match: G3XKQ9 (Protein LAX PANICLE 2 OS=Oryza sativa subsp. japonica OX=39947 GN=LAX2 PE=1 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 1.0e-13
Identity = 36/81 (44.44%), Postives = 57/81 (70.37%), Query Frame = 0 

Query: 22  SIITNSAGLWFSLLSSPNRKGGAALPQIPKPYIRVKDEKMTVLMVKKYLLTKLGLSNQAE 81
           S +  +AG+WF L ++P +     LPQIP+ Y+R+KD ++TV ++ KYL+ KLGL +++E
Sbjct: 279 SAVAAAAGVWFVLQAAPLQGREPFLPQIPRSYLRIKDGRVTVRLLTKYLVNKLGLEDESE 338

Query: 82  VELWCMGERLLHTQSLKQVRD 103
           VE+ C G +LL   +L+ VRD
Sbjct: 339 VEITCRGRQLLPILTLQHVRD 359

[Close]
BLAST of Cucsat.G5187.T1 vs. ExPASy Swiss-Prot
Match: Q94AY3 (E3 ubiquitin protein ligase DRIP2 OS=Arabidopsis thaliana OX=3702 GN=DRIP2 PE=1 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 2.0e-12
Identity = 33/73 (45.21%), Postives = 52/73 (71.23%), Query Frame = 0 

Query: 30  LWFSLLSSPNRKGGAALPQIPKPYIRVKDEKMTVLMVKKYLLTKLGLSNQAEVELWCMGE 89
           +WFSL++S N++G A+LPQIP  Y+R++D  + V  ++KYL+ KL L ++ EVE+ CMGE
Sbjct: 310 VWFSLVASSNQEGEASLPQIPANYLRIRDGNIPVSFIQKYLMRKLDLKSEDEVEITCMGE 369

Query: 90  RLLHTQSLKQVRD 103
            ++ T  L  + D
Sbjct: 370 PVIPTLQLHSLVD 382

[Close]
BLAST of Cucsat.G5187.T1 vs. ExPASy Swiss-Prot
Match: Q9M9Y4 (E3 ubiquitin protein ligase DRIP1 OS=Arabidopsis thaliana OX=3702 GN=DRIP1 PE=1 SV=2)

HSP 1 Score: 72.0 bits (175), Expect = 4.3e-12
Identity = 31/73 (42.47%), Postives = 53/73 (72.60%), Query Frame = 0 

Query: 30  LWFSLLSSPNRKGGAALPQIPKPYIRVKDEKMTVLMVKKYLLTKLGLSNQAEVELWCMGE 89
           +WFSL++S +++GG +LPQIP  ++R++D   TV  ++KYL+ KL L ++ E+E+ CMGE
Sbjct: 311 VWFSLVASNDQEGGTSLPQIPANFLRIRDGNTTVSFIQKYLMRKLDLESENEIEIKCMGE 370

Query: 90  RLLHTQSLKQVRD 103
            ++ T +L  + D
Sbjct: 371 AVIPTLTLYNLVD 383

[Close]
BLAST of Cucsat.G5187.T1 vs. ExPASy Swiss-Prot
Match: Q9LS86 (Probable E3 ubiquitin protein ligase DRIPH OS=Arabidopsis thaliana OX=3702 GN=At3g23060 PE=1 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 1.4e-07
Identity = 31/77 (40.26%), Postives = 44/77 (57.14%), Query Frame = 0 

Query: 26  NSAGLWFSLLSSPNRKGGAALPQIPKPYIRVKDEKMTVLMVKKYLLTKLGLSNQAEVELW 85
           N+  +WFSL  S  +     LP I    IRVKD  MTV  +KKYL+ KLGL ++ +VE+W
Sbjct: 361 NNNPVWFSLKPSKTQNIEMLLPPITACCIRVKDSNMTVSYLKKYLMVKLGLESEDQVEIW 420

Query: 86  CMGERLLHTQSLKQVRD 103
              E +  + +L  + D
Sbjct: 421 LRDEPVCSSLTLHNLVD 437

[Close]
BLAST of Cucsat.G5187.T1 vs. NCBI nr
Match: KAE8652308.1 (hypothetical protein Csa_022227 [Cucumis sativus])

HSP 1 Score: 166 bits (421), Expect = 7.42e-49
Identity = 81/83 (97.59%), Postives = 83/83 (100.00%), Query Frame = 0 

Query: 1   GIRDFMLQHQSKKKHFHSDYSSIITNSAGLWFSLLSSPNRKGGAALPQIPKPYIRVKDEK 60
           GIRDFMLQHQSKKKHFHSDYSSIITNSAGLWFSLLSSPNRKGGAALPQIPKPYIRVKDEK
Sbjct: 76  GIRDFMLQHQSKKKHFHSDYSSIITNSAGLWFSLLSSPNRKGGAALPQIPKPYIRVKDEK 135

Query: 61  MTVLMVKKYLLTKLGLSNQAEVE 83
           MTVLMVKKYLLTKLGLSNQAE++
Sbjct: 136 MTVLMVKKYLLTKLGLSNQAELD 158

[Close]
BLAST of Cucsat.G5187.T1 vs. NCBI nr
Match: XP_022931988.1 (protein LAX PANICLE 2-like [Cucurbita moschata])

HSP 1 Score: 148 bits (373), Expect = 1.74e-42
Identity = 80/113 (70.80%), Postives = 83/113 (73.45%), Query Frame = 0 

Query: 1   GIRDFMLQHQSKK-----------KHFHSDYSSIITNSAGLWFSLLSSPNRKGGAALPQI 60
           GI  FM    ++K            HFH   S    N AGLWFSL SSPNRKGGA LPQI
Sbjct: 60  GIMGFMSTQNNQKWAFHSHSLTNFPHFHGLSSPPPPNPAGLWFSLRSSPNRKGGAPLPQI 119

Query: 61  PKPYIRVKDEKMTVLMVKKYLLTKLGLSNQAEVELWCMGERLLHTQSLKQVRD 102
           PK YIRVKDEKMTVLMVKKYLLTKLGLS+QAEVELWCMGERLL TQSLKQVRD
Sbjct: 120 PKAYIRVKDEKMTVLMVKKYLLTKLGLSHQAEVELWCMGERLLQTQSLKQVRD 172

[Close]
BLAST of Cucsat.G5187.T1 vs. NCBI nr
Match: KAG6571319.1 (Protein LAX PANICLE 2, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 148 bits (373), Expect = 1.74e-42
Identity = 80/113 (70.80%), Postives = 83/113 (73.45%), Query Frame = 0 

Query: 1   GIRDFMLQHQSKK-----------KHFHSDYSSIITNSAGLWFSLLSSPNRKGGAALPQI 60
           GI  FM    ++K            HFH   S    N AGLWFSL SSPNRKGGA LPQI
Sbjct: 60  GIMGFMSTQNNQKWAFHSHSLTNFPHFHGLSSPPPPNPAGLWFSLRSSPNRKGGAPLPQI 119

Query: 61  PKPYIRVKDEKMTVLMVKKYLLTKLGLSNQAEVELWCMGERLLHTQSLKQVRD 102
           PK YIRVKDEKMTVLMVKKYLLTKLGLS+QAEVELWCMGERLL TQSLKQVRD
Sbjct: 120 PKAYIRVKDEKMTVLMVKKYLLTKLGLSHQAEVELWCMGERLLQTQSLKQVRD 172

[Close]
BLAST of Cucsat.G5187.T1 vs. NCBI nr
Match: XP_039026197.1 (protein LAX PANICLE 2-like [Hibiscus syriacus])

HSP 1 Score: 112 bits (280), Expect = 3.98e-29
Identity = 57/86 (66.28%), Postives = 67/86 (77.91%), Query Frame = 0 

Query: 17  HSDYSSIITNSAGLWFSLLSSPNRKGGAALPQIPKPYIRVKDEKMTVLMVKKYLLTKLGL 76
           H DYS      + LWF+L S  NR G  ALPQIPK YIRVKDE +T+ MVKKYL+TKLG+
Sbjct: 29  HHDYSRRTRPHSDLWFTLHSYTNRNG-EALPQIPKAYIRVKDENVTIFMVKKYLVTKLGV 88

Query: 77  SNQAEVELWCMGERLLHTQSLKQVRD 102
           SN+AEVE+ CMG+RLL TQ+LKQVRD
Sbjct: 89  SNEAEVEILCMGQRLLQTQTLKQVRD 113

[Close]
BLAST of Cucsat.G5187.T1 vs. NCBI nr
Match: XP_017971263.1 (PREDICTED: uncharacterized protein LOC18612903 isoform X1 [Theobroma cacao])

HSP 1 Score: 115 bits (287), Expect = 9.49e-29
Identity = 55/84 (65.48%), Postives = 68/84 (80.95%), Query Frame = 0 

Query: 19  DYSSIITNSAGLWFSLLSSPNRKGGAALPQIPKPYIRVKDEKMTVLMVKKYLLTKLGLSN 78
           DY +     +GLWF+L S  NR+ G ALPQIPK YIRVKDE +T+ MVKKYL+TKLGLSN
Sbjct: 160 DYLAGTRPHSGLWFTLQSYTNRRNGEALPQIPKAYIRVKDENVTIFMVKKYLVTKLGLSN 219

Query: 79  QAEVELWCMGERLLHTQSLKQVRD 102
           +AEV++ CMG++LLHT +LKQVRD
Sbjct: 220 EAEVDISCMGQKLLHTLTLKQVRD 243

[Close]
BLAST of Cucsat.G5187.T1 vs. ExPASy TrEMBL
Match: A0A6J1F0B3 (protein LAX PANICLE 2-like OS=Cucurbita moschata OX=3662 GN=LOC111438321 PE=4 SV=1)

HSP 1 Score: 148 bits (373), Expect = 8.41e-43
Identity = 80/113 (70.80%), Postives = 83/113 (73.45%), Query Frame = 0 

Query: 1   GIRDFMLQHQSKK-----------KHFHSDYSSIITNSAGLWFSLLSSPNRKGGAALPQI 60
           GI  FM    ++K            HFH   S    N AGLWFSL SSPNRKGGA LPQI
Sbjct: 60  GIMGFMSTQNNQKWAFHSHSLTNFPHFHGLSSPPPPNPAGLWFSLRSSPNRKGGAPLPQI 119

Query: 61  PKPYIRVKDEKMTVLMVKKYLLTKLGLSNQAEVELWCMGERLLHTQSLKQVRD 102
           PK YIRVKDEKMTVLMVKKYLLTKLGLS+QAEVELWCMGERLL TQSLKQVRD
Sbjct: 120 PKAYIRVKDEKMTVLMVKKYLLTKLGLSHQAEVELWCMGERLLQTQSLKQVRD 172

[Close]
BLAST of Cucsat.G5187.T1 vs. ExPASy TrEMBL
Match: A0A5D2F0S3 (Uncharacterized protein OS=Gossypium darwinii OX=34276 GN=ES288_A10G186800v1 PE=4 SV=1)

HSP 1 Score: 114 bits (285), Expect = 8.39e-29
Identity = 54/75 (72.00%), Postives = 65/75 (86.67%), Query Frame = 0 

Query: 28  AGLWFSLLSSPNRKGGAALPQIPKPYIRVKDEKMTVLMVKKYLLTKLGLSNQAEVELWCM 87
           +GLWF+L S  NR+ G ALPQIPK YIRVKDE +T+ MVKKYL+ KLGLSN+AEVE+ CM
Sbjct: 168 SGLWFTLHSYTNRRNGEALPQIPKAYIRVKDENVTIFMVKKYLVRKLGLSNEAEVEISCM 227

Query: 88  GERLLHTQSLKQVRD 102
           G+RL+HTQ+LKQVRD
Sbjct: 228 GQRLVHTQTLKQVRD 242

[Close]
BLAST of Cucsat.G5187.T1 vs. ExPASy TrEMBL
Match: A0A5D2XMI8 (Uncharacterized protein OS=Gossypium mustelinum OX=34275 GN=E1A91_A10G171700v1 PE=4 SV=1)

HSP 1 Score: 114 bits (285), Expect = 8.39e-29
Identity = 54/75 (72.00%), Postives = 65/75 (86.67%), Query Frame = 0 

Query: 28  AGLWFSLLSSPNRKGGAALPQIPKPYIRVKDEKMTVLMVKKYLLTKLGLSNQAEVELWCM 87
           +GLWF+L S  NR+ G ALPQIPK YIRVKDE +T+ MVKKYL+ KLGLSN+AEVE+ CM
Sbjct: 168 SGLWFTLHSYTNRRNGEALPQIPKAYIRVKDENVTIFMVKKYLVRKLGLSNEAEVEISCM 227

Query: 88  GERLLHTQSLKQVRD 102
           G+RL+HTQ+LKQVRD
Sbjct: 228 GQRLVHTQTLKQVRD 242

[Close]
BLAST of Cucsat.G5187.T1 vs. ExPASy TrEMBL
Match: A0A6P4PK13 (uncharacterized protein LOC108478946 isoform X1 OS=Gossypium arboreum OX=29729 GN=LOC108478946 PE=4 SV=1)

HSP 1 Score: 114 bits (285), Expect = 8.92e-29
Identity = 54/75 (72.00%), Postives = 65/75 (86.67%), Query Frame = 0 

Query: 28  AGLWFSLLSSPNRKGGAALPQIPKPYIRVKDEKMTVLMVKKYLLTKLGLSNQAEVELWCM 87
           +GLWF+L S  NR+ G ALPQIPK YIRVKDE +T+ MVKKYL+ KLGLSN+AEVE+ CM
Sbjct: 171 SGLWFTLHSYTNRRNGEALPQIPKAYIRVKDENVTIFMVKKYLVRKLGLSNEAEVEISCM 230

Query: 88  GERLLHTQSLKQVRD 102
           G+RL+HTQ+LKQVRD
Sbjct: 231 GQRLVHTQTLKQVRD 245

[Close]
BLAST of Cucsat.G5187.T1 vs. ExPASy TrEMBL
Match: A0A6P3ZLP7 (uncharacterized protein LOC107415739 isoform X2 OS=Ziziphus jujuba OX=326968 GN=LOC107415739 PE=4 SV=1)

HSP 1 Score: 114 bits (285), Expect = 1.95e-28
Identity = 57/93 (61.29%), Postives = 74/93 (79.57%), Query Frame = 0 

Query: 19  DYSSIITN-------SAGLWFSLLSSPNRK--GGAALPQIPKPYIRVKDEKMTVLMVKKY 78
           DYSS  +N       ++GLWF+L +S NR+  GG  LPQ+PK YIRVKDE +TV MVKKY
Sbjct: 191 DYSSSSSNIKISTRPNSGLWFTLSASTNREREGGGGLPQVPKAYIRVKDENVTVSMVKKY 250

Query: 79  LLTKLGLSNQAEVELWCMGERLLHTQSLKQVRD 102
           L+ KLGLSN+AE++++CMG++L+HTQSLKQVRD
Sbjct: 251 LVRKLGLSNEAEIDVYCMGQKLVHTQSLKQVRD 283

[Close]
BLAST of Cucsat.G5187.T1 vs. TAIR 10
Match: AT2G30580.1 (DREB2A-interacting protein 2 )

HSP 1 Score: 73.2 bits (178), Expect = 1.4e-13
Identity = 33/73 (45.21%), Postives = 52/73 (71.23%), Query Frame = 0 

Query: 30  LWFSLLSSPNRKGGAALPQIPKPYIRVKDEKMTVLMVKKYLLTKLGLSNQAEVELWCMGE 89
           +WFSL++S N++G A+LPQIP  Y+R++D  + V  ++KYL+ KL L ++ EVE+ CMGE
Sbjct: 310 VWFSLVASSNQEGEASLPQIPANYLRIRDGNIPVSFIQKYLMRKLDLKSEDEVEITCMGE 369

Query: 90  RLLHTQSLKQVRD 103
            ++ T  L  + D
Sbjct: 370 PVIPTLQLHSLVD 382

[Close]
BLAST of Cucsat.G5187.T1 vs. TAIR 10
Match: AT1G06770.1 (DREB2A-interacting protein 1 )

HSP 1 Score: 72.0 bits (175), Expect = 3.1e-13
Identity = 31/73 (42.47%), Postives = 53/73 (72.60%), Query Frame = 0 

Query: 30  LWFSLLSSPNRKGGAALPQIPKPYIRVKDEKMTVLMVKKYLLTKLGLSNQAEVELWCMGE 89
           +WFSL++S +++GG +LPQIP  ++R++D   TV  ++KYL+ KL L ++ E+E+ CMGE
Sbjct: 311 VWFSLVASNDQEGGTSLPQIPANFLRIRDGNTTVSFIQKYLMRKLDLESENEIEIKCMGE 370

Query: 90  RLLHTQSLKQVRD 103
            ++ T +L  + D
Sbjct: 371 AVIPTLTLYNLVD 383

[Close]
BLAST of Cucsat.G5187.T1 vs. TAIR 10
Match: AT1G06770.2 (DREB2A-interacting protein 1 )

HSP 1 Score: 72.0 bits (175), Expect = 3.1e-13
Identity = 31/73 (42.47%), Postives = 53/73 (72.60%), Query Frame = 0 

Query: 30  LWFSLLSSPNRKGGAALPQIPKPYIRVKDEKMTVLMVKKYLLTKLGLSNQAEVELWCMGE 89
           +WFSL++S +++GG +LPQIP  ++R++D   TV  ++KYL+ KL L ++ E+E+ CMGE
Sbjct: 197 VWFSLVASNDQEGGTSLPQIPANFLRIRDGNTTVSFIQKYLMRKLDLESENEIEIKCMGE 256

Query: 90  RLLHTQSLKQVRD 103
            ++ T +L  + D
Sbjct: 257 AVIPTLTLYNLVD 269

[Close]
BLAST of Cucsat.G5187.T1 vs. TAIR 10
Match: AT5G13250.1 (RING finger protein )

HSP 1 Score: 68.9 bits (167), Expect = 2.6e-12
Identity = 35/76 (46.05%), Postives = 52/76 (68.42%), Query Frame = 0 

Query: 28  AGLWFSLLSSPNRKGGAALPQIPKPYIRVKDEKMTVLMVKKYLLTKLGLSNQA-EVELWC 87
           +G+WF L +S N+     LPQIPK Y+R+KD KMTV ++ KYL+ KL L +++ +VE+ C
Sbjct: 274 SGIWFLLQASQNQTVEPFLPQIPKSYLRIKDGKMTVRLLMKYLVNKLRLEHESQQVEIRC 333

Query: 88  MGERLLHTQSLKQVRD 103
            G+ L    +L+ VRD
Sbjct: 334 RGQELEPVLTLQHVRD 349

[Close]
BLAST of Cucsat.G5187.T1 vs. TAIR 10
Match: AT3G23060.1 (RING/U-box superfamily protein )

HSP 1 Score: 57.0 bits (136), Expect = 1.0e-08
Identity = 31/77 (40.26%), Postives = 44/77 (57.14%), Query Frame = 0 

Query: 26  NSAGLWFSLLSSPNRKGGAALPQIPKPYIRVKDEKMTVLMVKKYLLTKLGLSNQAEVELW 85
           N+  +WFSL  S  +     LP I    IRVKD  MTV  +KKYL+ KLGL ++ +VE+W
Sbjct: 361 NNNPVWFSLKPSKTQNIEMLLPPITACCIRVKDSNMTVSYLKKYLMVKLGLESEDQVEIW 420

Query: 86  CMGERLLHTQSLKQVRD 103
              E +  + +L  + D
Sbjct: 421 LRDEPVCSSLTLHNLVD 437

The following BLAST results are available for this feature:
BLAST of Cucsat.G5187.T1 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
G3XKQ91.0e-1344.44Protein LAX PANICLE 2 OS=Oryza sativa subsp. japonica OX=39947 GN=LAX2 PE=1 SV=1[more]
Q94AY32.0e-1245.21E3 ubiquitin protein ligase DRIP2 OS=Arabidopsis thaliana OX=3702 GN=DRIP2 PE=1 ... [more]
Q9M9Y44.3e-1242.47E3 ubiquitin protein ligase DRIP1 OS=Arabidopsis thaliana OX=3702 GN=DRIP1 PE=1 ... [more]
Q9LS861.4e-0740.26Probable E3 ubiquitin protein ligase DRIPH OS=Arabidopsis thaliana OX=3702 GN=At... [more]
BLAST of Cucsat.G5187.T1 vs. NCBI nr
Match NameE-valueIdentityDescription
KAE8652308.17.42e-4997.59hypothetical protein Csa_022227 [Cucumis sativus][more]
XP_022931988.11.74e-4270.80protein LAX PANICLE 2-like [Cucurbita moschata][more]
KAG6571319.11.74e-4270.80Protein LAX PANICLE 2, partial [Cucurbita argyrosperma subsp. sororia][more]
XP_039026197.13.98e-2966.28protein LAX PANICLE 2-like [Hibiscus syriacus][more]
XP_017971263.19.49e-2965.48PREDICTED: uncharacterized protein LOC18612903 isoform X1 [Theobroma cacao][more]
BLAST of Cucsat.G5187.T1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1F0B38.41e-4370.80protein LAX PANICLE 2-like OS=Cucurbita moschata OX=3662 GN=LOC111438321 PE=4 SV... [more]
A0A5D2F0S38.39e-2972.00Uncharacterized protein OS=Gossypium darwinii OX=34276 GN=ES288_A10G186800v1 PE=... [more]
A0A5D2XMI88.39e-2972.00Uncharacterized protein OS=Gossypium mustelinum OX=34275 GN=E1A91_A10G171700v1 P... [more]
A0A6P4PK138.92e-2972.00uncharacterized protein LOC108478946 isoform X1 OS=Gossypium arboreum OX=29729 G... [more]
A0A6P3ZLP71.95e-2861.29uncharacterized protein LOC107415739 isoform X2 OS=Ziziphus jujuba OX=326968 GN=... [more]
BLAST of Cucsat.G5187.T1 vs. TAIR 10
Match NameE-valueIdentityDescription
AT2G30580.11.4e-1345.21DREB2A-interacting protein 2 [more]
AT1G06770.13.1e-1342.47DREB2A-interacting protein 1 [more]
AT1G06770.23.1e-1342.47DREB2A-interacting protein 1 [more]
AT5G13250.12.6e-1246.05RING finger protein [more]
AT3G23060.11.0e-0840.26RING/U-box superfamily protein [more]
InterPro
Analysis Name: InterPro Annotations of Cucumber (B10) v3
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.10.20.90coord: 4..102
e-value: 7.2E-10
score: 40.6
NoneNo IPR availablePANTHERPTHR47290:SF6SUBFAMILY NOT NAMEDcoord: 20..102
IPR044171Protein LAX PANICLE 2-likePANTHERPTHR47290RING FINGER PROTEINcoord: 20..102

Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Cucsat.G5187Cucsat.G5187gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Cucsat.G5187.T1.E1Cucsat.G5187.T1.E1exon
Cucsat.G5187.T1.E2Cucsat.G5187.T1.E2exon
Cucsat.G5187.T1.E3Cucsat.G5187.T1.E3exon
Cucsat.G5187.T1.E4Cucsat.G5187.T1.E4exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Cucsat.G5187.T1.C4Cucsat.G5187.T1.C4CDS
Cucsat.G5187.T1.C3Cucsat.G5187.T1.C3CDS
Cucsat.G5187.T1.C2Cucsat.G5187.T1.C2CDS
Cucsat.G5187.T1.C1Cucsat.G5187.T1.C1CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Cucsat.G5187.T1Cucsat.G5187.T1-proteinpolypeptide


GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007275 multicellular organism development