Cucsat.G3561.T1 (mRNA) Cucumber (B10) v3

Overview


Name	Cucsat.G3561.T1
Type	mRNA
Organism	Cucumis sativus L. var. sativus cv B10 (Cucumber (B10) v3)
Description	transcription initiation factor TFIID subunit 9
Location	ctg1047: 961271 .. 963719 (-)
RNA-Seq Expression	Cucsat.G3561.T1
Synteny	Cucsat.G3561.T1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TGGTTAATTTTTTTTTCAAATTTCTCAAAATAATTTCTTAAAGAAAAAAGAAAAAAAAAATCAGATTCTATCTCGCGAGTCTCTCCTCTCCCAGCTCTCTCCATATCTCACGCCGTCGCCCAGCCACAGTGCCGCTCCCCCCACTGCACCTCCGTCCACGTTACGGTGAGCGATTTTCCATCTCTGCATTTCTATCTCTCTAAGATTTGTTTTCTGCATTTAGATGTTAGATTTTTGGGTAAGTACTGTAAAATTGAGTTTGATTTTGGGGAGTTGAAATGAACGACAATCTACAGGAATTACAGATTTGTTAGGGCGAAGATTTTGTAGTTTAAACTATTGAGAGAATCTACAATTTTGTTAGTGGGGTGGATATGACAATCAAAACATTAATTTTGACCTTCAAAATTGGGTATACTGATATTTCTATTCTTTTCATGGATGATATCCTTATTTTTCTTGTCCAGTTTTATTCTATTTTTTCTGGGTACTTTGAGATTTTAGGGCAATTGATTTAATTTGGGTAGTTTGAATTCATAGTTTTTCGATTATTTTTGAGAAATTGGATTAAATTAGGGAAGAAAATGTCTACTTATGAGGACATAGGAGAAAGCAGAGGGGAAAAAAGCCCTAATCTTCGTCTTCTACCTCTCCTTCTCTCAGTCACTGCCGTCGACCCCCCTTTTCCCCTTTACAATTCATCTCCTTCTCGGGGATCCTTCCCTCCATGCAATGCATCTCCGGCGACCTTTAGAGGCCGCGTCAGTTCTCCTCTCAGGCAGAAGTGGCTTAATTCAAATGGTCACTTTAATTTAGCTGCGAATGCCACACTTAACCATGAGTTCGGCGCCTCTTTTATTTGGTAGTTTACTTAGAAATCGTTGGTAATAAATTGTCACAGTTGAATTGTGTATTCTTATGTTTTTGCATTCTTGTTTTATATATATATAGCACTTAGCTTCGTCTCCAAAGCAATGCTCACTTCATAATTATCAGACGTGTGATATAAAAAAGATCATGTTTGGAACATCAGTTTAAAAGTGATATAAATTTCTTGTGCAGTTGAAGGGTAGTAAGAAAATGTCTGAGGGAGACGAGGAGTTACCGAGGGATGCTAAAATTGTGAAGACATTGTTGAAATCAATGGGGGTTGAAGATTATGAACCACGAGTTATACACCAGTTTCTTGAGCTGTGGTATCGTTATGTTGTTGACGTACTGACAGATGCACAAGTCTATTCGGAGCATGCGGGCAAGGCTGCCATTGATTGTGATGATGTGAAGCTTGCTATTCAGTCGAAAGTTAATTTCAGCTTCTCGCAACCTCCTCCAAGAGAGGTAACAATGGCTTCATAGTCCAAATTACATGTGATTTGTTTGTGGGTAAAATGTCTGGGCACTTTATGGTTACTGAAAGGCATTTGAAACTGTAATCCTGGACCCCTGGTAAGTTGCAGTGTATCTTAGAATCAAATTATCATCTTGTTAGCGAGAAATACTAGTTTTCAAATTTTAAAACCATTTTGGGTTGGTCTGGTGGTAATCGAGGTATGGTCTTAATGGATCTAGCGAGTTGTCTCGTGAGATTGTTCTGTATATGTAGCCTTAAAAAAAAAAAAGCTTAGAGGTGGTATATACTTATAGAAATTCGATCATAGTCACACATTTTCCCTTTCTATCTTCTCTCCCTATTTAAGGAAAAGTGTTTAACCGTGACTTCATTTTCTGTCAGGTTCTTTTAGAGTTGGCTAGAAACAGGAATAAGATCCCATTGCCAAGGTCGATTGGTGGGCCTGGTATTGCCCTTCCACCAGATCAAGACACATTGCTCAGTCCCAATTATCAACTGGCAATCCCAAAGAAGCAAGCAGTCGAAACGATGGAGGAAACAGAGGAAGACGAAGGTGATGACACAGTTGCTCCATCCCAAGAACCCAGCTCATCAGAAGTACCTCAACAGCATGCCTCACAAAGAGTATCTTTTCCATTGGCAAAACGTTCAAAAATAACGTAGTTGTTTTTCCTTCTTTGTTTCCCTTTCCTCAACCTCTAATGAAAAGGGGATTTGAAATAGATTCATTTGAAGTTGTTGGTAAGTATTGTTTGTTGGATATTATCAAACTATTGTATAATACCTCTAAAAGAATTCAGTGGCTTTATTTCCACTAATTTGTCAATTCCGAAGACATGAATATTTCTTCCCAACTTTATGGAGAAAACTACGCCTTCTCATATGAGTGAGTGGTCTATAAAAGTTGTCAAATTGTCTGTTCAAATCACTAATAAGCCAGTACATGATAGTGATGAAAAGAAAAATCATATTAATGGAAATGAATTCCTACAAGACTGAGCATTCAAGAATACACTCCAAACAAGAGTGCTTCTAATTTTGATTTTGAACGATATTGAATTTCAGTTAGTCATCTTTTTCTCTTTTTTTTTTTTTTTT

Coding sequence (CDS)

ATGTCTGAGGGAGACGAGGAGTTACCGAGGGATGCTAAAATTGTGAAGACATTGTTGAAATCAATGGGGGTTGAAGATTATGAACCACGAGTTATACACCAGTTTCTTGAGCTGTGGTATCGTTATGTTGTTGACGTACTGACAGATGCACAAGTCTATTCGGAGCATGCGGGCAAGGCTGCCATTGATTGTGATGATGTGAAGCTTGCTATTCAGTCGAAAGTTAATTTCAGCTTCTCGCAACCTCCTCCAAGAGAGGTTCTTTTAGAGTTGGCTAGAAACAGGAATAAGATCCCATTGCCAAGGTCGATTGGTGGGCCTGGTATTGCCCTTCCACCAGATCAAGACACATTGCTCAGTCCCAATTATCAACTGGCAATCCCAAAGAAGCAAGCAGTCGAAACGATGGAGGAAACAGAGGAAGACGAAGGTGATGACACAGTTGCTCCATCCCAAGAACCCAGCTCATCAGAAGTACCTCAACAGCATGCCTCACAAAGAGTATCTTTTCCATTGGCAAAACGTTCAAAAATAACGTAG

Protein sequence

MSEGDEELPRDAKIVKTLLKSMGVEDYEPRVIHQFLELWYRYVVDVLTDAQVYSEHAGKAAIDCDDVKLAIQSKVNFSFSQPPPREVLLELARNRNKIPLPRSIGGPGIALPPDQDTLLSPNYQLAIPKKQAVETMEETEEDEGDDTVAPSQEPSSSEVPQQHASQRVSFPLAKRSKIT

Homology

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BLAST of Cucsat.G3561.T1 vs. ExPASy Swiss-Prot
Match: Q9SYH2 (Transcription initiation factor TFIID subunit 9 OS=Arabidopsis thaliana OX=3702 GN=TAF9 PE=1 SV=1)

HSP 1 Score: 252.7 bits (644), Expect = 3.2e-66
Identity = 132/182 (72.53%), Postives = 146/182 (80.22%), Query Frame = 0


Query: 3   EGDEELPRDAKIVKTLLKSMGVEDYEPRVIHQFLELWYRYVVDVLTDAQVYSEHAGKAAI 62
           EG+E++PRDAKIVK+LLKSMGVEDYEPRVIHQFLELWYRYVV+VLTDAQVYSEHA K  I
Sbjct: 4   EGEEDVPRDAKIVKSLLKSMGVEDYEPRVIHQFLELWYRYVVEVLTDAQVYSEHASKPNI 63

Query: 63  DCDDVKLAIQSKVNFSFSQPPPREVLLELARNRNKIPLPRSIGGPGIALPPDQDTLLSPN 122
           DCDDVKLAIQSKVNFSFSQPPPREVLLELA +RNKIPLP+SI GPG+ LPP+QDTLLSPN
Sbjct: 64  DCDDVKLAIQSKVNFSFSQPPPREVLLELAASRNKIPLPKSIAGPGVPLPPEQDTLLSPN 123

Query: 123 YQLAIPKKQAVETMEETEEDEGDDTVAPSQEPSSSEVPQQHAS-------QRVSFPLAKR 178
           YQL IPKK      EETE+DE  +   P Q     +  QQ  S       QRVSFPL++R
Sbjct: 124 YQLVIPKKSVSTEPEETEDDE--EMTDPGQSSQEQQQQQQQTSDLPSQTPQRVSFPLSRR 183

[Close]

BLAST of Cucsat.G3561.T1 vs. ExPASy Swiss-Prot
Match: Q17QQ4 (Transcription initiation factor TFIID subunit 9 OS=Bos taurus OX=9913 GN=TAF9 PE=2 SV=1)

HSP 1 Score: 134.0 bits (336), Expect = 1.6e-30
Identity = 63/127 (49.61%), Postives = 91/127 (71.65%), Query Frame = 0


Query: 6   EELPRDAKIVKTLLKSMGVEDYEPRVIHQFLELWYRYVVDVLTDAQVYSEHAGKAAIDCD 65
           + +P+DA+++  +LK MG+ +YEPRVI+Q LE  +RYV  +L DA++YS HA KA +D D
Sbjct: 10  KSMPKDAQMMAQILKDMGITEYEPRVINQMLEFAFRYVTTILDDAKIYSSHAKKATVDAD 69

Query: 66  DVKLAIQSKVNFSFSQPPPREVLLELARNRNKIPLPRSIGGPGIALPPDQDTLLSPNYQL 125
           DV+LAIQ + + SF+ PPPR+ LL++AR RN+ PLP      G  LPPD+  L +PNY+L
Sbjct: 70  DVRLAIQCRADQSFTSPPPRDFLLDIARQRNQTPLPLIKPYSGPRLPPDRYCLTAPNYRL 129

Query: 126 AIPKKQA 133
              +K+A
Sbjct: 130 KSLQKKA 136

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BLAST of Cucsat.G3561.T1 vs. ExPASy Swiss-Prot
Match: Q8VI33 (Transcription initiation factor TFIID subunit 9 OS=Mus musculus OX=10090 GN=Taf9 PE=1 SV=1)

HSP 1 Score: 134.0 bits (336), Expect = 1.6e-30
Identity = 63/127 (49.61%), Postives = 91/127 (71.65%), Query Frame = 0


Query: 6   EELPRDAKIVKTLLKSMGVEDYEPRVIHQFLELWYRYVVDVLTDAQVYSEHAGKAAIDCD 65
           + +P+DA+++  +LK MG+ +YEPRVI+Q LE  +RYV  +L DA++YS HA KA +D D
Sbjct: 10  KSMPKDAQMMAQILKDMGITEYEPRVINQMLEFAFRYVTTILDDAKIYSSHAKKATVDAD 69

Query: 66  DVKLAIQSKVNFSFSQPPPREVLLELARNRNKIPLPRSIGGPGIALPPDQDTLLSPNYQL 125
           DV+LAIQ + + SF+ PPPR+ LL++AR RN+ PLP      G  LPPD+  L +PNY+L
Sbjct: 70  DVRLAIQCRADQSFTSPPPRDFLLDIARQRNQTPLPLIKPYSGPRLPPDRYCLTAPNYRL 129

Query: 126 AIPKKQA 133
              +K+A
Sbjct: 130 KSLQKKA 136

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BLAST of Cucsat.G3561.T1 vs. ExPASy Swiss-Prot
Match: Q5BKE0 (Transcription initiation factor TFIID subunit 9 OS=Rattus norvegicus OX=10116 GN=Taf9 PE=2 SV=1)

HSP 1 Score: 132.1 bits (331), Expect = 6.2e-30
Identity = 62/127 (48.82%), Postives = 90/127 (70.87%), Query Frame = 0


Query: 6   EELPRDAKIVKTLLKSMGVEDYEPRVIHQFLELWYRYVVDVLTDAQVYSEHAGKAAIDCD 65
           + +P+DA+++  +LK MG+ +YEPRVI+Q LE  +RYV  +L DA++YS HA K  +D D
Sbjct: 10  KSMPKDAQMMAQILKDMGITEYEPRVINQMLEFAFRYVTTILDDAKIYSSHAKKPTVDAD 69

Query: 66  DVKLAIQSKVNFSFSQPPPREVLLELARNRNKIPLPRSIGGPGIALPPDQDTLLSPNYQL 125
           DV+LAIQ + + SF+ PPPR+ LL++AR RN+ PLP      G  LPPD+  L +PNY+L
Sbjct: 70  DVRLAIQCRADQSFTSPPPRDFLLDIARQRNQTPLPLIKPYSGPRLPPDRYCLTAPNYRL 129

Query: 126 AIPKKQA 133
              +K+A
Sbjct: 130 KSLQKKA 136

[Close]

BLAST of Cucsat.G3561.T1 vs. ExPASy Swiss-Prot
Match: Q62880 (Transcription initiation factor TFIID subunit 9B OS=Rattus norvegicus OX=10116 GN=Taf9b PE=2 SV=2)

HSP 1 Score: 130.6 bits (327), Expect = 1.8e-29
Identity = 61/117 (52.14%), Postives = 83/117 (70.94%), Query Frame = 0


Query: 9   PRDAKIVKTLLKSMGVEDYEPRVIHQFLELWYRYVVDVLTDAQVYSEHAGKAAIDCDDVK 68
           PRDA ++  +LK MG+ DYEPRVI+Q LE  +RYV  +L DA++YS HA K  +D DDV+
Sbjct: 13  PRDALVMAQILKDMGITDYEPRVINQMLEFAFRYVTTILDDAKIYSSHAKKPTVDADDVR 72

Query: 69  LAIQSKVNFSFSQPPPREVLLELARNRNKIPLPRSIGGPGIALPPDQDTLLSPNYQL 126
           LAIQ + + SF+ PPPR+ LL++AR +N+ PLP      G  LPPD+  L +PNY+L
Sbjct: 73  LAIQCRADQSFTSPPPRDFLLDIARQKNQTPLPLIKPYAGPRLPPDRYCLTAPNYRL 129

[Close]

BLAST of Cucsat.G3561.T1 vs. NCBI nr
Match: XP_011659620.1 (transcription initiation factor TFIID subunit 9 [Cucumis sativus] >KGN45487.1 hypothetical protein Csa_015827 [Cucumis sativus])

HSP 1 Score: 346 bits (888), Expect = 5.81e-120
Identity = 179/179 (100.00%), Postives = 179/179 (100.00%), Query Frame = 0


Query: 1   MSEGDEELPRDAKIVKTLLKSMGVEDYEPRVIHQFLELWYRYVVDVLTDAQVYSEHAGKA 60
           MSEGDEELPRDAKIVKTLLKSMGVEDYEPRVIHQFLELWYRYVVDVLTDAQVYSEHAGKA
Sbjct: 1   MSEGDEELPRDAKIVKTLLKSMGVEDYEPRVIHQFLELWYRYVVDVLTDAQVYSEHAGKA 60

Query: 61  AIDCDDVKLAIQSKVNFSFSQPPPREVLLELARNRNKIPLPRSIGGPGIALPPDQDTLLS 120
           AIDCDDVKLAIQSKVNFSFSQPPPREVLLELARNRNKIPLPRSIGGPGIALPPDQDTLLS
Sbjct: 61  AIDCDDVKLAIQSKVNFSFSQPPPREVLLELARNRNKIPLPRSIGGPGIALPPDQDTLLS 120

Query: 121 PNYQLAIPKKQAVETMEETEEDEGDDTVAPSQEPSSSEVPQQHASQRVSFPLAKRSKIT 179
           PNYQLAIPKKQAVETMEETEEDEGDDTVAPSQEPSSSEVPQQHASQRVSFPLAKRSKIT
Sbjct: 121 PNYQLAIPKKQAVETMEETEEDEGDDTVAPSQEPSSSEVPQQHASQRVSFPLAKRSKIT 179

[Close]

BLAST of Cucsat.G3561.T1 vs. NCBI nr
Match: XP_008462302.1 (PREDICTED: transcription initiation factor TFIID subunit 9 isoform X2 [Cucumis melo] >XP_008462303.1 PREDICTED: transcription initiation factor TFIID subunit 9 isoform X2 [Cucumis melo] >KAA0059398.1 transcription initiation factor TFIID subunit 9 isoform X2 [Cucumis melo var. makuwa] >TYK03929.1 transcription initiation factor TFIID subunit 9 isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 339 bits (869), Expect = 4.58e-117
Identity = 174/179 (97.21%), Postives = 176/179 (98.32%), Query Frame = 0


Query: 1   MSEGDEELPRDAKIVKTLLKSMGVEDYEPRVIHQFLELWYRYVVDVLTDAQVYSEHAGKA 60
           MS+GDEELPRDAKIVKTLLKSMGVEDYEPRVIHQFLELWYRYVVDVLTDAQVYSEHAGKA
Sbjct: 1   MSDGDEELPRDAKIVKTLLKSMGVEDYEPRVIHQFLELWYRYVVDVLTDAQVYSEHAGKA 60

Query: 61  AIDCDDVKLAIQSKVNFSFSQPPPREVLLELARNRNKIPLPRSIGGPGIALPPDQDTLLS 120
           AIDCDDVKLAIQSKVNFSFSQPPPREVLLELARNRNKIPLPRSIGGPGIALPPDQDTLLS
Sbjct: 61  AIDCDDVKLAIQSKVNFSFSQPPPREVLLELARNRNKIPLPRSIGGPGIALPPDQDTLLS 120

Query: 121 PNYQLAIPKKQAVETMEETEEDEGDDTVAPSQEPSSSEVPQQHASQRVSFPLAKRSKIT 179
           PNYQLAIPKKQAVETMEETEEDEGDDTV PSQEPSSSEVPQQHA QRVSFPLAKR K+T
Sbjct: 121 PNYQLAIPKKQAVETMEETEEDEGDDTVVPSQEPSSSEVPQQHAPQRVSFPLAKRPKLT 179

[Close]

BLAST of Cucsat.G3561.T1 vs. NCBI nr
Match: XP_016902840.1 (PREDICTED: transcription initiation factor TFIID subunit 9 isoform X1 [Cucumis melo])

HSP 1 Score: 339 bits (869), Expect = 8.94e-117
Identity = 174/179 (97.21%), Postives = 176/179 (98.32%), Query Frame = 0


Query: 1   MSEGDEELPRDAKIVKTLLKSMGVEDYEPRVIHQFLELWYRYVVDVLTDAQVYSEHAGKA 60
           MS+GDEELPRDAKIVKTLLKSMGVEDYEPRVIHQFLELWYRYVVDVLTDAQVYSEHAGKA
Sbjct: 20  MSDGDEELPRDAKIVKTLLKSMGVEDYEPRVIHQFLELWYRYVVDVLTDAQVYSEHAGKA 79

Query: 61  AIDCDDVKLAIQSKVNFSFSQPPPREVLLELARNRNKIPLPRSIGGPGIALPPDQDTLLS 120
           AIDCDDVKLAIQSKVNFSFSQPPPREVLLELARNRNKIPLPRSIGGPGIALPPDQDTLLS
Sbjct: 80  AIDCDDVKLAIQSKVNFSFSQPPPREVLLELARNRNKIPLPRSIGGPGIALPPDQDTLLS 139

Query: 121 PNYQLAIPKKQAVETMEETEEDEGDDTVAPSQEPSSSEVPQQHASQRVSFPLAKRSKIT 179
           PNYQLAIPKKQAVETMEETEEDEGDDTV PSQEPSSSEVPQQHA QRVSFPLAKR K+T
Sbjct: 140 PNYQLAIPKKQAVETMEETEEDEGDDTVVPSQEPSSSEVPQQHAPQRVSFPLAKRPKLT 198

[Close]

BLAST of Cucsat.G3561.T1 vs. NCBI nr
Match: XP_038896108.1 (transcription initiation factor TFIID subunit 9 [Benincasa hispida] >XP_038896109.1 transcription initiation factor TFIID subunit 9 [Benincasa hispida])

HSP 1 Score: 317 bits (811), Expect = 2.97e-108
Identity = 168/179 (93.85%), Postives = 169/179 (94.41%), Query Frame = 0


Query: 1   MSEGDEELPRDAKIVKTLLKSMGVEDYEPRVIHQFLELWYRYVVDVLTDAQVYSEHAGKA 60
           MSEGDEELPRDAKIVKTLLKSMGVEDYEPRVIHQFLELWYRYVVDVLTDAQVYSEHAGKA
Sbjct: 1   MSEGDEELPRDAKIVKTLLKSMGVEDYEPRVIHQFLELWYRYVVDVLTDAQVYSEHAGKA 60

Query: 61  AIDCDDVKLAIQSKVNFSFSQPPPREVLLELARNRNKIPLPRSIGGPGIALPPDQDTLLS 120
           AIDCDDVKLAIQSKVNFSFSQPPPREVLLELAR+RNKIPLPR IGGPGIALPPDQDTLLS
Sbjct: 61  AIDCDDVKLAIQSKVNFSFSQPPPREVLLELARSRNKIPLPRLIGGPGIALPPDQDTLLS 120

Query: 121 PNYQLAIPKKQAVETMEETEEDEGDDTVAPSQEPSSSEVPQQHASQRVSFPLAKRSKIT 179
           PNYQLAIPKKQ VETMEETEEDEGD  V PSQEP S EVPQQH  QRVSFPLAKR KIT
Sbjct: 121 PNYQLAIPKKQPVETMEETEEDEGDHAV-PSQEPGS-EVPQQHTPQRVSFPLAKRPKIT 177

[Close]

BLAST of Cucsat.G3561.T1 vs. NCBI nr
Match: XP_022953465.1 (transcription initiation factor TFIID subunit 9 [Cucurbita moschata])

HSP 1 Score: 313 bits (803), Expect = 1.98e-106
Identity = 165/179 (92.18%), Postives = 170/179 (94.97%), Query Frame = 0


Query: 1   MSEGDEELPRDAKIVKTLLKSMGVEDYEPRVIHQFLELWYRYVVDVLTDAQVYSEHAGKA 60
           MSEGDE+LPRDAKIVKTLLKSMGVEDYEPRVIHQFLELWYRYVVDVLTDAQVYSEHAGKA
Sbjct: 41  MSEGDEDLPRDAKIVKTLLKSMGVEDYEPRVIHQFLELWYRYVVDVLTDAQVYSEHAGKA 100

Query: 61  AIDCDDVKLAIQSKVNFSFSQPPPREVLLELARNRNKIPLPRSIGGPGIALPPDQDTLLS 120
           AIDCDDVKLAIQSKVNFSFSQPPPREVLLELARNRNKIPLPRSIGGPGIALPPDQDTLLS
Sbjct: 101 AIDCDDVKLAIQSKVNFSFSQPPPREVLLELARNRNKIPLPRSIGGPGIALPPDQDTLLS 160

Query: 121 PNYQLAIPKKQAVETMEETEEDEGDDTVAPSQEPSSSEVPQQHASQRVSFPLAKRSKIT 179
           PNYQLAIP+K+ VE MEETEEDEG D V PSQEPS+ EVPQQH  QRVSFPL+KR KIT
Sbjct: 161 PNYQLAIPRKRQVEAMEETEEDEGVDAV-PSQEPST-EVPQQHTPQRVSFPLSKRPKIT 217

[Close]

BLAST of Cucsat.G3561.T1 vs. ExPASy TrEMBL
Match: A0A0A0KAU5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G449470 PE=3 SV=1)

HSP 1 Score: 346 bits (888), Expect = 2.81e-120
Identity = 179/179 (100.00%), Postives = 179/179 (100.00%), Query Frame = 0


Query: 1   MSEGDEELPRDAKIVKTLLKSMGVEDYEPRVIHQFLELWYRYVVDVLTDAQVYSEHAGKA 60
           MSEGDEELPRDAKIVKTLLKSMGVEDYEPRVIHQFLELWYRYVVDVLTDAQVYSEHAGKA
Sbjct: 1   MSEGDEELPRDAKIVKTLLKSMGVEDYEPRVIHQFLELWYRYVVDVLTDAQVYSEHAGKA 60

Query: 61  AIDCDDVKLAIQSKVNFSFSQPPPREVLLELARNRNKIPLPRSIGGPGIALPPDQDTLLS 120
           AIDCDDVKLAIQSKVNFSFSQPPPREVLLELARNRNKIPLPRSIGGPGIALPPDQDTLLS
Sbjct: 61  AIDCDDVKLAIQSKVNFSFSQPPPREVLLELARNRNKIPLPRSIGGPGIALPPDQDTLLS 120

Query: 121 PNYQLAIPKKQAVETMEETEEDEGDDTVAPSQEPSSSEVPQQHASQRVSFPLAKRSKIT 179
           PNYQLAIPKKQAVETMEETEEDEGDDTVAPSQEPSSSEVPQQHASQRVSFPLAKRSKIT
Sbjct: 121 PNYQLAIPKKQAVETMEETEEDEGDDTVAPSQEPSSSEVPQQHASQRVSFPLAKRSKIT 179

[Close]

BLAST of Cucsat.G3561.T1 vs. ExPASy TrEMBL
Match: A0A1S3CGN5 (transcription initiation factor TFIID subunit 9 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103500691 PE=3 SV=1)

HSP 1 Score: 339 bits (869), Expect = 2.22e-117
Identity = 174/179 (97.21%), Postives = 176/179 (98.32%), Query Frame = 0


Query: 1   MSEGDEELPRDAKIVKTLLKSMGVEDYEPRVIHQFLELWYRYVVDVLTDAQVYSEHAGKA 60
           MS+GDEELPRDAKIVKTLLKSMGVEDYEPRVIHQFLELWYRYVVDVLTDAQVYSEHAGKA
Sbjct: 1   MSDGDEELPRDAKIVKTLLKSMGVEDYEPRVIHQFLELWYRYVVDVLTDAQVYSEHAGKA 60

Query: 61  AIDCDDVKLAIQSKVNFSFSQPPPREVLLELARNRNKIPLPRSIGGPGIALPPDQDTLLS 120
           AIDCDDVKLAIQSKVNFSFSQPPPREVLLELARNRNKIPLPRSIGGPGIALPPDQDTLLS
Sbjct: 61  AIDCDDVKLAIQSKVNFSFSQPPPREVLLELARNRNKIPLPRSIGGPGIALPPDQDTLLS 120

Query: 121 PNYQLAIPKKQAVETMEETEEDEGDDTVAPSQEPSSSEVPQQHASQRVSFPLAKRSKIT 179
           PNYQLAIPKKQAVETMEETEEDEGDDTV PSQEPSSSEVPQQHA QRVSFPLAKR K+T
Sbjct: 121 PNYQLAIPKKQAVETMEETEEDEGDDTVVPSQEPSSSEVPQQHAPQRVSFPLAKRPKLT 179

[Close]

BLAST of Cucsat.G3561.T1 vs. ExPASy TrEMBL
Match: A0A5A7UW56 (Transcription initiation factor TFIID subunit 9 isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold347G001260 PE=3 SV=1)

HSP 1 Score: 339 bits (869), Expect = 2.22e-117
Identity = 174/179 (97.21%), Postives = 176/179 (98.32%), Query Frame = 0


Query: 1   MSEGDEELPRDAKIVKTLLKSMGVEDYEPRVIHQFLELWYRYVVDVLTDAQVYSEHAGKA 60
           MS+GDEELPRDAKIVKTLLKSMGVEDYEPRVIHQFLELWYRYVVDVLTDAQVYSEHAGKA
Sbjct: 1   MSDGDEELPRDAKIVKTLLKSMGVEDYEPRVIHQFLELWYRYVVDVLTDAQVYSEHAGKA 60

Query: 61  AIDCDDVKLAIQSKVNFSFSQPPPREVLLELARNRNKIPLPRSIGGPGIALPPDQDTLLS 120
           AIDCDDVKLAIQSKVNFSFSQPPPREVLLELARNRNKIPLPRSIGGPGIALPPDQDTLLS
Sbjct: 61  AIDCDDVKLAIQSKVNFSFSQPPPREVLLELARNRNKIPLPRSIGGPGIALPPDQDTLLS 120

Query: 121 PNYQLAIPKKQAVETMEETEEDEGDDTVAPSQEPSSSEVPQQHASQRVSFPLAKRSKIT 179
           PNYQLAIPKKQAVETMEETEEDEGDDTV PSQEPSSSEVPQQHA QRVSFPLAKR K+T
Sbjct: 121 PNYQLAIPKKQAVETMEETEEDEGDDTVVPSQEPSSSEVPQQHAPQRVSFPLAKRPKLT 179

[Close]

BLAST of Cucsat.G3561.T1 vs. ExPASy TrEMBL
Match: A0A1S4E4D8 (transcription initiation factor TFIID subunit 9 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103500691 PE=3 SV=1)

HSP 1 Score: 339 bits (869), Expect = 4.33e-117
Identity = 174/179 (97.21%), Postives = 176/179 (98.32%), Query Frame = 0


Query: 1   MSEGDEELPRDAKIVKTLLKSMGVEDYEPRVIHQFLELWYRYVVDVLTDAQVYSEHAGKA 60
           MS+GDEELPRDAKIVKTLLKSMGVEDYEPRVIHQFLELWYRYVVDVLTDAQVYSEHAGKA
Sbjct: 20  MSDGDEELPRDAKIVKTLLKSMGVEDYEPRVIHQFLELWYRYVVDVLTDAQVYSEHAGKA 79

Query: 61  AIDCDDVKLAIQSKVNFSFSQPPPREVLLELARNRNKIPLPRSIGGPGIALPPDQDTLLS 120
           AIDCDDVKLAIQSKVNFSFSQPPPREVLLELARNRNKIPLPRSIGGPGIALPPDQDTLLS
Sbjct: 80  AIDCDDVKLAIQSKVNFSFSQPPPREVLLELARNRNKIPLPRSIGGPGIALPPDQDTLLS 139

Query: 121 PNYQLAIPKKQAVETMEETEEDEGDDTVAPSQEPSSSEVPQQHASQRVSFPLAKRSKIT 179
           PNYQLAIPKKQAVETMEETEEDEGDDTV PSQEPSSSEVPQQHA QRVSFPLAKR K+T
Sbjct: 140 PNYQLAIPKKQAVETMEETEEDEGDDTVVPSQEPSSSEVPQQHAPQRVSFPLAKRPKLT 198

[Close]

BLAST of Cucsat.G3561.T1 vs. ExPASy TrEMBL
Match: A0A6J1GPP8 (transcription initiation factor TFIID subunit 9 OS=Cucurbita moschata OX=3662 GN=LOC111456006 PE=3 SV=1)

HSP 1 Score: 313 bits (803), Expect = 9.58e-107
Identity = 165/179 (92.18%), Postives = 170/179 (94.97%), Query Frame = 0


Query: 1   MSEGDEELPRDAKIVKTLLKSMGVEDYEPRVIHQFLELWYRYVVDVLTDAQVYSEHAGKA 60
           MSEGDE+LPRDAKIVKTLLKSMGVEDYEPRVIHQFLELWYRYVVDVLTDAQVYSEHAGKA
Sbjct: 41  MSEGDEDLPRDAKIVKTLLKSMGVEDYEPRVIHQFLELWYRYVVDVLTDAQVYSEHAGKA 100

Query: 61  AIDCDDVKLAIQSKVNFSFSQPPPREVLLELARNRNKIPLPRSIGGPGIALPPDQDTLLS 120
           AIDCDDVKLAIQSKVNFSFSQPPPREVLLELARNRNKIPLPRSIGGPGIALPPDQDTLLS
Sbjct: 101 AIDCDDVKLAIQSKVNFSFSQPPPREVLLELARNRNKIPLPRSIGGPGIALPPDQDTLLS 160

Query: 121 PNYQLAIPKKQAVETMEETEEDEGDDTVAPSQEPSSSEVPQQHASQRVSFPLAKRSKIT 179
           PNYQLAIP+K+ VE MEETEEDEG D V PSQEPS+ EVPQQH  QRVSFPL+KR KIT
Sbjct: 161 PNYQLAIPRKRQVEAMEETEEDEGVDAV-PSQEPST-EVPQQHTPQRVSFPLSKRPKIT 217

[Close]

BLAST of Cucsat.G3561.T1 vs. TAIR 10
Match: AT1G54140.1 (TATA binding protein associated factor 21kDa subunit )

HSP 1 Score: 252.7 bits (644), Expect = 2.2e-67
Identity = 132/182 (72.53%), Postives = 146/182 (80.22%), Query Frame = 0


Query: 3   EGDEELPRDAKIVKTLLKSMGVEDYEPRVIHQFLELWYRYVVDVLTDAQVYSEHAGKAAI 62
           EG+E++PRDAKIVK+LLKSMGVEDYEPRVIHQFLELWYRYVV+VLTDAQVYSEHA K  I
Sbjct: 4   EGEEDVPRDAKIVKSLLKSMGVEDYEPRVIHQFLELWYRYVVEVLTDAQVYSEHASKPNI 63

Query: 63  DCDDVKLAIQSKVNFSFSQPPPREVLLELARNRNKIPLPRSIGGPGIALPPDQDTLLSPN 122
           DCDDVKLAIQSKVNFSFSQPPPREVLLELA +RNKIPLP+SI GPG+ LPP+QDTLLSPN
Sbjct: 64  DCDDVKLAIQSKVNFSFSQPPPREVLLELAASRNKIPLPKSIAGPGVPLPPEQDTLLSPN 123

Query: 123 YQLAIPKKQAVETMEETEEDEGDDTVAPSQEPSSSEVPQQHAS-------QRVSFPLAKR 178
           YQL IPKK      EETE+DE  +   P Q     +  QQ  S       QRVSFPL++R
Sbjct: 124 YQLVIPKKSVSTEPEETEDDE--EMTDPGQSSQEQQQQQQQTSDLPSQTPQRVSFPLSRR 183

The following BLAST results are available for this feature:

BLAST of Cucsat.G3561.T1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SYH2	3.2e-66	72.53	Transcription initiation factor TFIID subunit 9 OS=Arabidopsis thaliana OX=3702 ...	[more]
Q17QQ4	1.6e-30	49.61	Transcription initiation factor TFIID subunit 9 OS=Bos taurus OX=9913 GN=TAF9 PE...	[more]
Q8VI33	1.6e-30	49.61	Transcription initiation factor TFIID subunit 9 OS=Mus musculus OX=10090 GN=Taf9...	[more]
Q5BKE0	6.2e-30	48.82	Transcription initiation factor TFIID subunit 9 OS=Rattus norvegicus OX=10116 GN...	[more]
Q62880	1.8e-29	52.14	Transcription initiation factor TFIID subunit 9B OS=Rattus norvegicus OX=10116 G...	[more]

BLAST of Cucsat.G3561.T1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011659620.1	5.81e-120	100.00	transcription initiation factor TFIID subunit 9 [Cucumis sativus] >KGN45487.1 hy...	[more]
XP_008462302.1	4.58e-117	97.21	PREDICTED: transcription initiation factor TFIID subunit 9 isoform X2 [Cucumis m...	[more]
XP_016902840.1	8.94e-117	97.21	PREDICTED: transcription initiation factor TFIID subunit 9 isoform X1 [Cucumis m...	[more]
XP_038896108.1	2.97e-108	93.85	transcription initiation factor TFIID subunit 9 [Benincasa hispida] >XP_03889610...	[more]
XP_022953465.1	1.98e-106	92.18	transcription initiation factor TFIID subunit 9 [Cucurbita moschata]	[more]

BLAST of Cucsat.G3561.T1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KAU5	2.81e-120	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G449470 PE=3 SV=1	[more]
A0A1S3CGN5	2.22e-117	97.21	transcription initiation factor TFIID subunit 9 isoform X2 OS=Cucumis melo OX=36...	[more]
A0A5A7UW56	2.22e-117	97.21	Transcription initiation factor TFIID subunit 9 isoform X2 OS=Cucumis melo var. ...	[more]
A0A1S4E4D8	4.33e-117	97.21	transcription initiation factor TFIID subunit 9 isoform X1 OS=Cucumis melo OX=36...	[more]
A0A6J1GPP8	9.58e-107	92.18	transcription initiation factor TFIID subunit 9 OS=Cucurbita moschata OX=3662 GN...	[more]

BLAST of Cucsat.G3561.T1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G54140.1	2.2e-67	72.53	TATA binding protein associated factor 21kDa subunit	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (B10) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003162	Transcription initiation factor TAFII31	PFAM	PF02291	TFIID-31kDa	coord: 6..125 e-value: 6.6E-47 score: 158.6
IPR003162	Transcription initiation factor TAFII31	CDD	cd07979	TAF9	coord: 9..125 e-value: 2.64856E-66 score: 196.684
IPR009072	Histone-fold	GENE3D	1.10.20.10	Histone, subunit A	coord: 9..76 e-value: 9.6E-31 score: 107.8
IPR009072	Histone-fold	SUPERFAMILY	47113	Histone-fold	coord: 9..73
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 149..169
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 129..179
None	No IPR available	PANTHER	PTHR48068	TAF9 RNA POLYMERASE II, TATA BOX-BINDING PROTEIN (TBP)-ASSOCIATED FACTOR	coord: 4..163

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cucsat.G3561	Cucsat.G3561	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cucsat.G3561.T1.E1	Cucsat.G3561.T1.E1	exon
Cucsat.G3561.T1.E2	Cucsat.G3561.T1.E2	exon
Cucsat.G3561.T1.E3	Cucsat.G3561.T1.E3	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cucsat.G3561.T1.C2	Cucsat.G3561.T1.C2	CDS
Cucsat.G3561.T1.C1	Cucsat.G3561.T1.C1	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cucsat.G3561.T1	Cucsat.G3561.T1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006352	DNA-templated transcription, initiation
biological_process	GO:0043966	histone H3 acetylation
biological_process	GO:0045893	positive regulation of transcription, DNA-templated
biological_process	GO:0051123	RNA polymerase II preinitiation complex assembly
biological_process	GO:0006413	translational initiation
cellular_component	GO:0000124	SAGA complex
cellular_component	GO:0005669	transcription factor TFIID complex
molecular_function	GO:0046982	protein heterodimerization activity
molecular_function	GO:0016251	RNA polymerase II general transcription initiation factor activity
molecular_function	GO:0003713	transcription coactivator activity
molecular_function	GO:0003743	translation initiation factor activity