Cucsat.G3561 (gene) Cucumber (B10) v3

Overview


Name	Cucsat.G3561
Type	gene
Organism	Cucumis sativus L. var. sativus cv B10 (Cucumber (B10) v3)
Description	transcription initiation factor TFIID subunit 9
Location	ctg1047: 961441 .. 962715 (-)
RNA-Seq Expression	Cucsat.G3561
Synteny	Cucsat.G3561

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TGGTTAATTTTTTTTTCAAATTTCTCAAAATAATTTCTTAAAGAAAAAAGAAAAAAAAAATCAGATTCTATCTCGCGAGTCTCTCCTCTCCCAGCTCTCTCCATATCTCACGCCGTCGCCCAGCCACAGTGCCGCTCCCCCCACTGCACCTCCGTCCACGTTACGGTGAGCGATTTTCCATCTCTGCATTTCTATCTCTCTAAGATTTGTTTTCTGCATTTAGATGTTAGATTTTTGGGTAAGTACTGTAAAATTGAGTTTGATTTTGGGGAGTTGAAATGAACGACAATCTACAGGAATTACAGATTTGTTAGGGCGAAGATTTTGTAGTTTAAACTATTGAGAGAATCTACAATTTTGTTAGTGGGGTGGATATGACAATCAAAACATTAATTTTGACCTTCAAAATTGGGTATACTGATATTTCTATTCTTTTCATGGATGATATCCTTATTTTTCTTGTCCAGTTTTATTCTATTTTTTCTGGGTACTTTGAGATTTTAGGGCAATTGATTTAATTTGGGTAGTTTGAATTCATAGTTTTTCGATTATTTTTGAGAAATTGGATTAAATTAGGGAAGAAAATGTCTACTTATGAGGACATAGGAGAAAGCAGAGGGGAAAAAAGCCCTAATCTTCGTCTTCTACCTCTCCTTCTCTCAGTCACTGCCGTCGACCCCCCTTTTCCCCTTTACAATTCATCTCCTTCTCGGGGATCCTTCCCTCCATGCAATGCATCTCCGGCGACCTTTAGAGGCCGCGTCAGTTCTCCTCTCAGGCAGAAGTGGCTTAATTCAAATGGTCACTTTAATTTAGCTGCGAATGCCACACTTAACCATGAGTTCGGCGCCTCTTTTATTTGGTAGTTTACTTAGAAATCGTTGGTAATAAATTGTCACAGTTGAATTGTGTATTCTTATGTTTTTGCATTCTTGTTTTATATATATATAGCACTTAGCTTCGTCTCCAAAGCAATGCTCACTTCATAATTATCAGACGTGTGATATAAAAAAGATCATGTTTGGAACATCAGTTTAAAAGTGATATAAATTTCTTGTGCAGTTGAAGGGTAGTAAGAAAATGTCTGAGGGAGACGAGGAGTTACCGAGGGATGCTAAAATTGTGAAGACATTGTTGAAATCAATGGGGGTTGAAGATTATGAACCACGAGTTATACACCAGTTTCTTGAGCTGTGGTATCGTTATGTTGTTGACGTACTGACAGATGCACAAGTCTATTCGGAGCATGCGGGCAAGGCTGCCATTGATTGTGATGATGTGAAGCTTGCTATTCAGTCGAAAGTTAATTTCAGCTTCTCGCAACCTCCTCCAAGAGAGGTAACAATGGCTTCATAGTCCAAATTACATGTGATTTGTTTGTGGGTAAAATGTCTGGGCACTTTATGGTTACTGAAAGGCATTTGAAACTGTAATCCTGGACCCCTGGTAAGTTGCAGTGTATCTTAGAATCAAATTATCATCTTGTTAGCGAGAAATACTAGTTTTCAAATTTTAAAACCATTTTGGGTTGGTCTGGTGGTAATCGAGGTATGGTCTTAATGGATCTAGCGAGTTGTCTCGTGAGATTGTTCTGTATATGTAGCCTTAAAAAAAAAAAAGCTTAGAGGTGGTATATACTTATAGAAATTCGATCATAGTCACACATTTTCCCTTTCTATCTTCTCTCCCTATTTAAGGAAAAGTGTTTAACCGTGACTTCATTTTCTGTCAGGTTCTTTTAGAGTTGGCTAGAAACAGGAATAAGATCCCATTGCCAAGGTCGATTGGTGGGCCTGGTATTGCCCTTCCACCAGATCAAGACACATTGCTCAGTCCCAATTATCAACTGGCAATCCCAAAGAAGCAAGCAGTCGAAACGATGGAGGAAACAGAGGAAGACGAAGGTGATGACACAGTTGCTCCATCCCAAGAACCCAGCTCATCAGAAGTACCTCAACAGCATGCCTCACAAAGAGTATCTTTTCCATTGGCAAAACGTTCAAAAATAACGTAGTTGTTTTTCCTTCTTTGTTTCCCTTTCCTCAACCTCTAATGAAAAGGGGATTTGAAATAGATTCATTTGAAGTTGTTGGTAAGTATTGTTTGTTGGATATTATCAAACTATTGTATAATACCTCTAAAAGAATTCAGTGGCTTTATTTCCACTAATTTGTCAATTCCGAAGACATGAATATTTCTTCCCAACTTTATGGAGAAAACTACGCCTTCTCATATGAGTGAGTGGTCTATAAAAGTTGTCAAATTGTCTGTTCAAATCACTAATAAGCCAGTACATGATAGTGATGAAAAGAAAAATCATATTAATGGAAATGAATTCCTACAAGACTGAGCATTCAAGAATACACTCCAAACAAGAGTGCTTCTAATTTTGATTTTGAACGATATTGAATTTCAGTTAGTCATCTTTTTCTCTTTTTTTTTTTTTTTT

Coding sequence (CDS)

ATGTCTGAGGGAGACGAGGAGTTACCGAGGGATGCTAAAATTGTGAAGACATTGTTGAAATCAATGGGGGTTGAAGATTATGAACCACGAGTTATACACCAGTTTCTTGAGCTGTGGTATCGTTATGTTGTTGACGTACTGACAGATGCACAAGTCTATTCGGAGCATGCGGGCAAGGCTGCCATTGATTGTGATGATGTGAAGCTTGCTATTCAGTCGAAAGTTAATTTCAGCTTCTCGCAACCTCCTCCAAGAGAGGTTCTTTTAGAGTTGGCTAGAAACAGGAATAAGATCCCATTGCCAAGGTCGATTGGTGGGCCTGGTATTGCCCTTCCACCAGATCAAGACACATTGCTCAGTCCCAATTATCAACTGGCAATCCCAAAGAAGCAAGCAGTCGAAACGATGGAGGAAACAGAGGAAGACGAAGGTGATGACACAGTTGCTCCATCCCAAGAACCCAGCTCATCAGAAGTACCTCAACAGCATGCCTCACAAAGAGTATCTTTTCCATTGGCAAAACGTTCAAAAATAACGTAG

Protein sequence

MSEGDEELPRDAKIVKTLLKSMGVEDYEPRVIHQFLELWYRYVVDVLTDAQVYSEHAGKAAIDCDDVKLAIQSKVNFSFSQPPPREVLLELARNRNKIPLPRSIGGPGIALPPDQDTLLSPNYQLAIPKKQAVETMEETEEDEGDDTVAPSQEPSSSEVPQQHASQRVSFPLAKRSKIT

Homology

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BLAST of Cucsat.G3561 vs. ExPASy Swiss-Prot
Match: Q9SYH2 (Transcription initiation factor TFIID subunit 9 OS=Arabidopsis thaliana OX=3702 GN=TAF9 PE=1 SV=1)

HSP 1 Score: 252.7 bits (644), Expect = 3.2e-66
Identity = 132/182 (72.53%), Postives = 146/182 (80.22%), Query Frame = 0


Query: 3   EGDEELPRDAKIVKTLLKSMGVEDYEPRVIHQFLELWYRYVVDVLTDAQVYSEHAGKAAI 62
           EG+E++PRDAKIVK+LLKSMGVEDYEPRVIHQFLELWYRYVV+VLTDAQVYSEHA K  I
Sbjct: 4   EGEEDVPRDAKIVKSLLKSMGVEDYEPRVIHQFLELWYRYVVEVLTDAQVYSEHASKPNI 63

Query: 63  DCDDVKLAIQSKVNFSFSQPPPREVLLELARNRNKIPLPRSIGGPGIALPPDQDTLLSPN 122
           DCDDVKLAIQSKVNFSFSQPPPREVLLELA +RNKIPLP+SI GPG+ LPP+QDTLLSPN
Sbjct: 64  DCDDVKLAIQSKVNFSFSQPPPREVLLELAASRNKIPLPKSIAGPGVPLPPEQDTLLSPN 123

Query: 123 YQLAIPKKQAVETMEETEEDEGDDTVAPSQEPSSSEVPQQHAS-------QRVSFPLAKR 178
           YQL IPKK      EETE+DE  +   P Q     +  QQ  S       QRVSFPL++R
Sbjct: 124 YQLVIPKKSVSTEPEETEDDE--EMTDPGQSSQEQQQQQQQTSDLPSQTPQRVSFPLSRR 183

[Close]

BLAST of Cucsat.G3561 vs. ExPASy Swiss-Prot
Match: Q17QQ4 (Transcription initiation factor TFIID subunit 9 OS=Bos taurus OX=9913 GN=TAF9 PE=2 SV=1)

HSP 1 Score: 134.0 bits (336), Expect = 1.6e-30
Identity = 63/127 (49.61%), Postives = 91/127 (71.65%), Query Frame = 0


Query: 6   EELPRDAKIVKTLLKSMGVEDYEPRVIHQFLELWYRYVVDVLTDAQVYSEHAGKAAIDCD 65
           + +P+DA+++  +LK MG+ +YEPRVI+Q LE  +RYV  +L DA++YS HA KA +D D
Sbjct: 10  KSMPKDAQMMAQILKDMGITEYEPRVINQMLEFAFRYVTTILDDAKIYSSHAKKATVDAD 69

Query: 66  DVKLAIQSKVNFSFSQPPPREVLLELARNRNKIPLPRSIGGPGIALPPDQDTLLSPNYQL 125
           DV+LAIQ + + SF+ PPPR+ LL++AR RN+ PLP      G  LPPD+  L +PNY+L
Sbjct: 70  DVRLAIQCRADQSFTSPPPRDFLLDIARQRNQTPLPLIKPYSGPRLPPDRYCLTAPNYRL 129

Query: 126 AIPKKQA 133
              +K+A
Sbjct: 130 KSLQKKA 136

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BLAST of Cucsat.G3561 vs. ExPASy Swiss-Prot
Match: Q8VI33 (Transcription initiation factor TFIID subunit 9 OS=Mus musculus OX=10090 GN=Taf9 PE=1 SV=1)

HSP 1 Score: 134.0 bits (336), Expect = 1.6e-30
Identity = 63/127 (49.61%), Postives = 91/127 (71.65%), Query Frame = 0


Query: 6   EELPRDAKIVKTLLKSMGVEDYEPRVIHQFLELWYRYVVDVLTDAQVYSEHAGKAAIDCD 65
           + +P+DA+++  +LK MG+ +YEPRVI+Q LE  +RYV  +L DA++YS HA KA +D D
Sbjct: 10  KSMPKDAQMMAQILKDMGITEYEPRVINQMLEFAFRYVTTILDDAKIYSSHAKKATVDAD 69

Query: 66  DVKLAIQSKVNFSFSQPPPREVLLELARNRNKIPLPRSIGGPGIALPPDQDTLLSPNYQL 125
           DV+LAIQ + + SF+ PPPR+ LL++AR RN+ PLP      G  LPPD+  L +PNY+L
Sbjct: 70  DVRLAIQCRADQSFTSPPPRDFLLDIARQRNQTPLPLIKPYSGPRLPPDRYCLTAPNYRL 129

Query: 126 AIPKKQA 133
              +K+A
Sbjct: 130 KSLQKKA 136

[Close]

BLAST of Cucsat.G3561 vs. ExPASy Swiss-Prot
Match: Q5BKE0 (Transcription initiation factor TFIID subunit 9 OS=Rattus norvegicus OX=10116 GN=Taf9 PE=2 SV=1)

HSP 1 Score: 132.1 bits (331), Expect = 6.2e-30
Identity = 62/127 (48.82%), Postives = 90/127 (70.87%), Query Frame = 0


Query: 6   EELPRDAKIVKTLLKSMGVEDYEPRVIHQFLELWYRYVVDVLTDAQVYSEHAGKAAIDCD 65
           + +P+DA+++  +LK MG+ +YEPRVI+Q LE  +RYV  +L DA++YS HA K  +D D
Sbjct: 10  KSMPKDAQMMAQILKDMGITEYEPRVINQMLEFAFRYVTTILDDAKIYSSHAKKPTVDAD 69

Query: 66  DVKLAIQSKVNFSFSQPPPREVLLELARNRNKIPLPRSIGGPGIALPPDQDTLLSPNYQL 125
           DV+LAIQ + + SF+ PPPR+ LL++AR RN+ PLP      G  LPPD+  L +PNY+L
Sbjct: 70  DVRLAIQCRADQSFTSPPPRDFLLDIARQRNQTPLPLIKPYSGPRLPPDRYCLTAPNYRL 129

Query: 126 AIPKKQA 133
              +K+A
Sbjct: 130 KSLQKKA 136

[Close]

BLAST of Cucsat.G3561 vs. ExPASy Swiss-Prot
Match: Q62880 (Transcription initiation factor TFIID subunit 9B OS=Rattus norvegicus OX=10116 GN=Taf9b PE=2 SV=2)

HSP 1 Score: 130.6 bits (327), Expect = 1.8e-29
Identity = 61/117 (52.14%), Postives = 83/117 (70.94%), Query Frame = 0


Query: 9   PRDAKIVKTLLKSMGVEDYEPRVIHQFLELWYRYVVDVLTDAQVYSEHAGKAAIDCDDVK 68
           PRDA ++  +LK MG+ DYEPRVI+Q LE  +RYV  +L DA++YS HA K  +D DDV+
Sbjct: 13  PRDALVMAQILKDMGITDYEPRVINQMLEFAFRYVTTILDDAKIYSSHAKKPTVDADDVR 72

Query: 69  LAIQSKVNFSFSQPPPREVLLELARNRNKIPLPRSIGGPGIALPPDQDTLLSPNYQL 126
           LAIQ + + SF+ PPPR+ LL++AR +N+ PLP      G  LPPD+  L +PNY+L
Sbjct: 73  LAIQCRADQSFTSPPPRDFLLDIARQKNQTPLPLIKPYAGPRLPPDRYCLTAPNYRL 129

[Close]

BLAST of Cucsat.G3561 vs. NCBI nr
Match: XP_011659620.1 (transcription initiation factor TFIID subunit 9 [Cucumis sativus] >KGN45487.1 hypothetical protein Csa_015827 [Cucumis sativus])

HSP 1 Score: 346 bits (888), Expect = 5.81e-120
Identity = 179/179 (100.00%), Postives = 179/179 (100.00%), Query Frame = 0


Query: 1   MSEGDEELPRDAKIVKTLLKSMGVEDYEPRVIHQFLELWYRYVVDVLTDAQVYSEHAGKA 60
           MSEGDEELPRDAKIVKTLLKSMGVEDYEPRVIHQFLELWYRYVVDVLTDAQVYSEHAGKA
Sbjct: 1   MSEGDEELPRDAKIVKTLLKSMGVEDYEPRVIHQFLELWYRYVVDVLTDAQVYSEHAGKA 60

Query: 61  AIDCDDVKLAIQSKVNFSFSQPPPREVLLELARNRNKIPLPRSIGGPGIALPPDQDTLLS 120
           AIDCDDVKLAIQSKVNFSFSQPPPREVLLELARNRNKIPLPRSIGGPGIALPPDQDTLLS
Sbjct: 61  AIDCDDVKLAIQSKVNFSFSQPPPREVLLELARNRNKIPLPRSIGGPGIALPPDQDTLLS 120

Query: 121 PNYQLAIPKKQAVETMEETEEDEGDDTVAPSQEPSSSEVPQQHASQRVSFPLAKRSKIT 179
           PNYQLAIPKKQAVETMEETEEDEGDDTVAPSQEPSSSEVPQQHASQRVSFPLAKRSKIT
Sbjct: 121 PNYQLAIPKKQAVETMEETEEDEGDDTVAPSQEPSSSEVPQQHASQRVSFPLAKRSKIT 179

[Close]

BLAST of Cucsat.G3561 vs. NCBI nr
Match: XP_008462302.1 (PREDICTED: transcription initiation factor TFIID subunit 9 isoform X2 [Cucumis melo] >XP_008462303.1 PREDICTED: transcription initiation factor TFIID subunit 9 isoform X2 [Cucumis melo] >KAA0059398.1 transcription initiation factor TFIID subunit 9 isoform X2 [Cucumis melo var. makuwa] >TYK03929.1 transcription initiation factor TFIID subunit 9 isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 339 bits (869), Expect = 4.58e-117
Identity = 174/179 (97.21%), Postives = 176/179 (98.32%), Query Frame = 0


Query: 1   MSEGDEELPRDAKIVKTLLKSMGVEDYEPRVIHQFLELWYRYVVDVLTDAQVYSEHAGKA 60
           MS+GDEELPRDAKIVKTLLKSMGVEDYEPRVIHQFLELWYRYVVDVLTDAQVYSEHAGKA
Sbjct: 1   MSDGDEELPRDAKIVKTLLKSMGVEDYEPRVIHQFLELWYRYVVDVLTDAQVYSEHAGKA 60

Query: 61  AIDCDDVKLAIQSKVNFSFSQPPPREVLLELARNRNKIPLPRSIGGPGIALPPDQDTLLS 120
           AIDCDDVKLAIQSKVNFSFSQPPPREVLLELARNRNKIPLPRSIGGPGIALPPDQDTLLS
Sbjct: 61  AIDCDDVKLAIQSKVNFSFSQPPPREVLLELARNRNKIPLPRSIGGPGIALPPDQDTLLS 120

Query: 121 PNYQLAIPKKQAVETMEETEEDEGDDTVAPSQEPSSSEVPQQHASQRVSFPLAKRSKIT 179
           PNYQLAIPKKQAVETMEETEEDEGDDTV PSQEPSSSEVPQQHA QRVSFPLAKR K+T
Sbjct: 121 PNYQLAIPKKQAVETMEETEEDEGDDTVVPSQEPSSSEVPQQHAPQRVSFPLAKRPKLT 179

[Close]

BLAST of Cucsat.G3561 vs. NCBI nr
Match: XP_016902840.1 (PREDICTED: transcription initiation factor TFIID subunit 9 isoform X1 [Cucumis melo])

HSP 1 Score: 339 bits (869), Expect = 8.94e-117
Identity = 174/179 (97.21%), Postives = 176/179 (98.32%), Query Frame = 0


Query: 1   MSEGDEELPRDAKIVKTLLKSMGVEDYEPRVIHQFLELWYRYVVDVLTDAQVYSEHAGKA 60
           MS+GDEELPRDAKIVKTLLKSMGVEDYEPRVIHQFLELWYRYVVDVLTDAQVYSEHAGKA
Sbjct: 20  MSDGDEELPRDAKIVKTLLKSMGVEDYEPRVIHQFLELWYRYVVDVLTDAQVYSEHAGKA 79

Query: 61  AIDCDDVKLAIQSKVNFSFSQPPPREVLLELARNRNKIPLPRSIGGPGIALPPDQDTLLS 120
           AIDCDDVKLAIQSKVNFSFSQPPPREVLLELARNRNKIPLPRSIGGPGIALPPDQDTLLS
Sbjct: 80  AIDCDDVKLAIQSKVNFSFSQPPPREVLLELARNRNKIPLPRSIGGPGIALPPDQDTLLS 139

Query: 121 PNYQLAIPKKQAVETMEETEEDEGDDTVAPSQEPSSSEVPQQHASQRVSFPLAKRSKIT 179
           PNYQLAIPKKQAVETMEETEEDEGDDTV PSQEPSSSEVPQQHA QRVSFPLAKR K+T
Sbjct: 140 PNYQLAIPKKQAVETMEETEEDEGDDTVVPSQEPSSSEVPQQHAPQRVSFPLAKRPKLT 198

[Close]

BLAST of Cucsat.G3561 vs. NCBI nr
Match: XP_038896108.1 (transcription initiation factor TFIID subunit 9 [Benincasa hispida] >XP_038896109.1 transcription initiation factor TFIID subunit 9 [Benincasa hispida])

HSP 1 Score: 317 bits (811), Expect = 2.97e-108
Identity = 168/179 (93.85%), Postives = 169/179 (94.41%), Query Frame = 0


Query: 1   MSEGDEELPRDAKIVKTLLKSMGVEDYEPRVIHQFLELWYRYVVDVLTDAQVYSEHAGKA 60
           MSEGDEELPRDAKIVKTLLKSMGVEDYEPRVIHQFLELWYRYVVDVLTDAQVYSEHAGKA
Sbjct: 1   MSEGDEELPRDAKIVKTLLKSMGVEDYEPRVIHQFLELWYRYVVDVLTDAQVYSEHAGKA 60

Query: 61  AIDCDDVKLAIQSKVNFSFSQPPPREVLLELARNRNKIPLPRSIGGPGIALPPDQDTLLS 120
           AIDCDDVKLAIQSKVNFSFSQPPPREVLLELAR+RNKIPLPR IGGPGIALPPDQDTLLS
Sbjct: 61  AIDCDDVKLAIQSKVNFSFSQPPPREVLLELARSRNKIPLPRLIGGPGIALPPDQDTLLS 120

Query: 121 PNYQLAIPKKQAVETMEETEEDEGDDTVAPSQEPSSSEVPQQHASQRVSFPLAKRSKIT 179
           PNYQLAIPKKQ VETMEETEEDEGD  V PSQEP S EVPQQH  QRVSFPLAKR KIT
Sbjct: 121 PNYQLAIPKKQPVETMEETEEDEGDHAV-PSQEPGS-EVPQQHTPQRVSFPLAKRPKIT 177

[Close]

BLAST of Cucsat.G3561 vs. NCBI nr
Match: XP_022953465.1 (transcription initiation factor TFIID subunit 9 [Cucurbita moschata])

HSP 1 Score: 313 bits (803), Expect = 1.98e-106
Identity = 165/179 (92.18%), Postives = 170/179 (94.97%), Query Frame = 0


Query: 1   MSEGDEELPRDAKIVKTLLKSMGVEDYEPRVIHQFLELWYRYVVDVLTDAQVYSEHAGKA 60
           MSEGDE+LPRDAKIVKTLLKSMGVEDYEPRVIHQFLELWYRYVVDVLTDAQVYSEHAGKA
Sbjct: 41  MSEGDEDLPRDAKIVKTLLKSMGVEDYEPRVIHQFLELWYRYVVDVLTDAQVYSEHAGKA 100

Query: 61  AIDCDDVKLAIQSKVNFSFSQPPPREVLLELARNRNKIPLPRSIGGPGIALPPDQDTLLS 120
           AIDCDDVKLAIQSKVNFSFSQPPPREVLLELARNRNKIPLPRSIGGPGIALPPDQDTLLS
Sbjct: 101 AIDCDDVKLAIQSKVNFSFSQPPPREVLLELARNRNKIPLPRSIGGPGIALPPDQDTLLS 160

Query: 121 PNYQLAIPKKQAVETMEETEEDEGDDTVAPSQEPSSSEVPQQHASQRVSFPLAKRSKIT 179
           PNYQLAIP+K+ VE MEETEEDEG D V PSQEPS+ EVPQQH  QRVSFPL+KR KIT
Sbjct: 161 PNYQLAIPRKRQVEAMEETEEDEGVDAV-PSQEPST-EVPQQHTPQRVSFPLSKRPKIT 217

[Close]

BLAST of Cucsat.G3561 vs. ExPASy TrEMBL
Match: A0A0A0KAU5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G449470 PE=3 SV=1)

HSP 1 Score: 346 bits (888), Expect = 2.81e-120
Identity = 179/179 (100.00%), Postives = 179/179 (100.00%), Query Frame = 0


Query: 1   MSEGDEELPRDAKIVKTLLKSMGVEDYEPRVIHQFLELWYRYVVDVLTDAQVYSEHAGKA 60
           MSEGDEELPRDAKIVKTLLKSMGVEDYEPRVIHQFLELWYRYVVDVLTDAQVYSEHAGKA
Sbjct: 1   MSEGDEELPRDAKIVKTLLKSMGVEDYEPRVIHQFLELWYRYVVDVLTDAQVYSEHAGKA 60

Query: 61  AIDCDDVKLAIQSKVNFSFSQPPPREVLLELARNRNKIPLPRSIGGPGIALPPDQDTLLS 120
           AIDCDDVKLAIQSKVNFSFSQPPPREVLLELARNRNKIPLPRSIGGPGIALPPDQDTLLS
Sbjct: 61  AIDCDDVKLAIQSKVNFSFSQPPPREVLLELARNRNKIPLPRSIGGPGIALPPDQDTLLS 120

Query: 121 PNYQLAIPKKQAVETMEETEEDEGDDTVAPSQEPSSSEVPQQHASQRVSFPLAKRSKIT 179
           PNYQLAIPKKQAVETMEETEEDEGDDTVAPSQEPSSSEVPQQHASQRVSFPLAKRSKIT
Sbjct: 121 PNYQLAIPKKQAVETMEETEEDEGDDTVAPSQEPSSSEVPQQHASQRVSFPLAKRSKIT 179

[Close]

BLAST of Cucsat.G3561 vs. ExPASy TrEMBL
Match: A0A1S3CGN5 (transcription initiation factor TFIID subunit 9 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103500691 PE=3 SV=1)

HSP 1 Score: 339 bits (869), Expect = 2.22e-117
Identity = 174/179 (97.21%), Postives = 176/179 (98.32%), Query Frame = 0


Query: 1   MSEGDEELPRDAKIVKTLLKSMGVEDYEPRVIHQFLELWYRYVVDVLTDAQVYSEHAGKA 60
           MS+GDEELPRDAKIVKTLLKSMGVEDYEPRVIHQFLELWYRYVVDVLTDAQVYSEHAGKA
Sbjct: 1   MSDGDEELPRDAKIVKTLLKSMGVEDYEPRVIHQFLELWYRYVVDVLTDAQVYSEHAGKA 60

Query: 61  AIDCDDVKLAIQSKVNFSFSQPPPREVLLELARNRNKIPLPRSIGGPGIALPPDQDTLLS 120
           AIDCDDVKLAIQSKVNFSFSQPPPREVLLELARNRNKIPLPRSIGGPGIALPPDQDTLLS
Sbjct: 61  AIDCDDVKLAIQSKVNFSFSQPPPREVLLELARNRNKIPLPRSIGGPGIALPPDQDTLLS 120

Query: 121 PNYQLAIPKKQAVETMEETEEDEGDDTVAPSQEPSSSEVPQQHASQRVSFPLAKRSKIT 179
           PNYQLAIPKKQAVETMEETEEDEGDDTV PSQEPSSSEVPQQHA QRVSFPLAKR K+T
Sbjct: 121 PNYQLAIPKKQAVETMEETEEDEGDDTVVPSQEPSSSEVPQQHAPQRVSFPLAKRPKLT 179

[Close]

BLAST of Cucsat.G3561 vs. ExPASy TrEMBL
Match: A0A5A7UW56 (Transcription initiation factor TFIID subunit 9 isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold347G001260 PE=3 SV=1)

HSP 1 Score: 339 bits (869), Expect = 2.22e-117
Identity = 174/179 (97.21%), Postives = 176/179 (98.32%), Query Frame = 0


Query: 1   MSEGDEELPRDAKIVKTLLKSMGVEDYEPRVIHQFLELWYRYVVDVLTDAQVYSEHAGKA 60
           MS+GDEELPRDAKIVKTLLKSMGVEDYEPRVIHQFLELWYRYVVDVLTDAQVYSEHAGKA
Sbjct: 1   MSDGDEELPRDAKIVKTLLKSMGVEDYEPRVIHQFLELWYRYVVDVLTDAQVYSEHAGKA 60

Query: 61  AIDCDDVKLAIQSKVNFSFSQPPPREVLLELARNRNKIPLPRSIGGPGIALPPDQDTLLS 120
           AIDCDDVKLAIQSKVNFSFSQPPPREVLLELARNRNKIPLPRSIGGPGIALPPDQDTLLS
Sbjct: 61  AIDCDDVKLAIQSKVNFSFSQPPPREVLLELARNRNKIPLPRSIGGPGIALPPDQDTLLS 120

Query: 121 PNYQLAIPKKQAVETMEETEEDEGDDTVAPSQEPSSSEVPQQHASQRVSFPLAKRSKIT 179
           PNYQLAIPKKQAVETMEETEEDEGDDTV PSQEPSSSEVPQQHA QRVSFPLAKR K+T
Sbjct: 121 PNYQLAIPKKQAVETMEETEEDEGDDTVVPSQEPSSSEVPQQHAPQRVSFPLAKRPKLT 179

[Close]

BLAST of Cucsat.G3561 vs. ExPASy TrEMBL
Match: A0A1S4E4D8 (transcription initiation factor TFIID subunit 9 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103500691 PE=3 SV=1)

HSP 1 Score: 339 bits (869), Expect = 4.33e-117
Identity = 174/179 (97.21%), Postives = 176/179 (98.32%), Query Frame = 0


Query: 1   MSEGDEELPRDAKIVKTLLKSMGVEDYEPRVIHQFLELWYRYVVDVLTDAQVYSEHAGKA 60
           MS+GDEELPRDAKIVKTLLKSMGVEDYEPRVIHQFLELWYRYVVDVLTDAQVYSEHAGKA
Sbjct: 20  MSDGDEELPRDAKIVKTLLKSMGVEDYEPRVIHQFLELWYRYVVDVLTDAQVYSEHAGKA 79

Query: 61  AIDCDDVKLAIQSKVNFSFSQPPPREVLLELARNRNKIPLPRSIGGPGIALPPDQDTLLS 120
           AIDCDDVKLAIQSKVNFSFSQPPPREVLLELARNRNKIPLPRSIGGPGIALPPDQDTLLS
Sbjct: 80  AIDCDDVKLAIQSKVNFSFSQPPPREVLLELARNRNKIPLPRSIGGPGIALPPDQDTLLS 139

Query: 121 PNYQLAIPKKQAVETMEETEEDEGDDTVAPSQEPSSSEVPQQHASQRVSFPLAKRSKIT 179
           PNYQLAIPKKQAVETMEETEEDEGDDTV PSQEPSSSEVPQQHA QRVSFPLAKR K+T
Sbjct: 140 PNYQLAIPKKQAVETMEETEEDEGDDTVVPSQEPSSSEVPQQHAPQRVSFPLAKRPKLT 198

[Close]

BLAST of Cucsat.G3561 vs. ExPASy TrEMBL
Match: A0A6J1GPP8 (transcription initiation factor TFIID subunit 9 OS=Cucurbita moschata OX=3662 GN=LOC111456006 PE=3 SV=1)

HSP 1 Score: 313 bits (803), Expect = 9.58e-107
Identity = 165/179 (92.18%), Postives = 170/179 (94.97%), Query Frame = 0


Query: 1   MSEGDEELPRDAKIVKTLLKSMGVEDYEPRVIHQFLELWYRYVVDVLTDAQVYSEHAGKA 60
           MSEGDE+LPRDAKIVKTLLKSMGVEDYEPRVIHQFLELWYRYVVDVLTDAQVYSEHAGKA
Sbjct: 41  MSEGDEDLPRDAKIVKTLLKSMGVEDYEPRVIHQFLELWYRYVVDVLTDAQVYSEHAGKA 100

Query: 61  AIDCDDVKLAIQSKVNFSFSQPPPREVLLELARNRNKIPLPRSIGGPGIALPPDQDTLLS 120
           AIDCDDVKLAIQSKVNFSFSQPPPREVLLELARNRNKIPLPRSIGGPGIALPPDQDTLLS
Sbjct: 101 AIDCDDVKLAIQSKVNFSFSQPPPREVLLELARNRNKIPLPRSIGGPGIALPPDQDTLLS 160

Query: 121 PNYQLAIPKKQAVETMEETEEDEGDDTVAPSQEPSSSEVPQQHASQRVSFPLAKRSKIT 179
           PNYQLAIP+K+ VE MEETEEDEG D V PSQEPS+ EVPQQH  QRVSFPL+KR KIT
Sbjct: 161 PNYQLAIPRKRQVEAMEETEEDEGVDAV-PSQEPST-EVPQQHTPQRVSFPLSKRPKIT 217

[Close]

BLAST of Cucsat.G3561 vs. TAIR 10
Match: AT1G54140.1 (TATA binding protein associated factor 21kDa subunit )

HSP 1 Score: 252.7 bits (644), Expect = 2.2e-67
Identity = 132/182 (72.53%), Postives = 146/182 (80.22%), Query Frame = 0


Query: 3   EGDEELPRDAKIVKTLLKSMGVEDYEPRVIHQFLELWYRYVVDVLTDAQVYSEHAGKAAI 62
           EG+E++PRDAKIVK+LLKSMGVEDYEPRVIHQFLELWYRYVV+VLTDAQVYSEHA K  I
Sbjct: 4   EGEEDVPRDAKIVKSLLKSMGVEDYEPRVIHQFLELWYRYVVEVLTDAQVYSEHASKPNI 63

Query: 63  DCDDVKLAIQSKVNFSFSQPPPREVLLELARNRNKIPLPRSIGGPGIALPPDQDTLLSPN 122
           DCDDVKLAIQSKVNFSFSQPPPREVLLELA +RNKIPLP+SI GPG+ LPP+QDTLLSPN
Sbjct: 64  DCDDVKLAIQSKVNFSFSQPPPREVLLELAASRNKIPLPKSIAGPGVPLPPEQDTLLSPN 123

Query: 123 YQLAIPKKQAVETMEETEEDEGDDTVAPSQEPSSSEVPQQHAS-------QRVSFPLAKR 178
           YQL IPKK      EETE+DE  +   P Q     +  QQ  S       QRVSFPL++R
Sbjct: 124 YQLVIPKKSVSTEPEETEDDE--EMTDPGQSSQEQQQQQQQTSDLPSQTPQRVSFPLSRR 183

The following BLAST results are available for this feature:

BLAST of Cucsat.G3561 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SYH2	3.2e-66	72.53	Transcription initiation factor TFIID subunit 9 OS=Arabidopsis thaliana OX=3702 ...	[more]
Q17QQ4	1.6e-30	49.61	Transcription initiation factor TFIID subunit 9 OS=Bos taurus OX=9913 GN=TAF9 PE...	[more]
Q8VI33	1.6e-30	49.61	Transcription initiation factor TFIID subunit 9 OS=Mus musculus OX=10090 GN=Taf9...	[more]
Q5BKE0	6.2e-30	48.82	Transcription initiation factor TFIID subunit 9 OS=Rattus norvegicus OX=10116 GN...	[more]
Q62880	1.8e-29	52.14	Transcription initiation factor TFIID subunit 9B OS=Rattus norvegicus OX=10116 G...	[more]

BLAST of Cucsat.G3561 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011659620.1	5.81e-120	100.00	transcription initiation factor TFIID subunit 9 [Cucumis sativus] >KGN45487.1 hy...	[more]
XP_008462302.1	4.58e-117	97.21	PREDICTED: transcription initiation factor TFIID subunit 9 isoform X2 [Cucumis m...	[more]
XP_016902840.1	8.94e-117	97.21	PREDICTED: transcription initiation factor TFIID subunit 9 isoform X1 [Cucumis m...	[more]
XP_038896108.1	2.97e-108	93.85	transcription initiation factor TFIID subunit 9 [Benincasa hispida] >XP_03889610...	[more]
XP_022953465.1	1.98e-106	92.18	transcription initiation factor TFIID subunit 9 [Cucurbita moschata]	[more]

BLAST of Cucsat.G3561 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KAU5	2.81e-120	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G449470 PE=3 SV=1	[more]
A0A1S3CGN5	2.22e-117	97.21	transcription initiation factor TFIID subunit 9 isoform X2 OS=Cucumis melo OX=36...	[more]
A0A5A7UW56	2.22e-117	97.21	Transcription initiation factor TFIID subunit 9 isoform X2 OS=Cucumis melo var. ...	[more]
A0A1S4E4D8	4.33e-117	97.21	transcription initiation factor TFIID subunit 9 isoform X1 OS=Cucumis melo OX=36...	[more]
A0A6J1GPP8	9.58e-107	92.18	transcription initiation factor TFIID subunit 9 OS=Cucurbita moschata OX=3662 GN...	[more]

BLAST of Cucsat.G3561 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G54140.1	2.2e-67	72.53	TATA binding protein associated factor 21kDa subunit	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (B10) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003162	Transcription initiation factor TAFII31	PFAM	PF02291	TFIID-31kDa	coord: 54..138 e-value: 1.7E-31 score: 108.8
IPR003162	Transcription initiation factor TAFII31	CDD	cd07979	TAF9	coord: 57..149 e-value: 7.6515E-48 score: 151.615
IPR009072	Histone-fold	GENE3D	1.10.20.10	Histone, subunit A	coord: 57..124 e-value: 1.5E-30 score: 107.2
IPR009072	Histone-fold	SUPERFAMILY	47113	Histone-fold	coord: 57..121
None	No IPR available	PANTHER	PTHR48068	TAF9 RNA POLYMERASE II, TATA BOX-BINDING PROTEIN (TBP)-ASSOCIATED FACTOR	coord: 44..138

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsat.G3561.T1	Cucsat.G3561.T1	mRNA
Cucsat.G3561.T2	Cucsat.G3561.T2	mRNA
Cucsat.G3561.T4	Cucsat.G3561.T4	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0043966	histone H3 acetylation
biological_process	GO:0045893	positive regulation of transcription, DNA-templated
biological_process	GO:0051123	RNA polymerase II preinitiation complex assembly
biological_process	GO:0006413	translational initiation
biological_process	GO:0006352	DNA-templated transcription, initiation
cellular_component	GO:0000124	SAGA complex
cellular_component	GO:0005669	transcription factor TFIID complex
molecular_function	GO:0046982	protein heterodimerization activity
molecular_function	GO:0016251	RNA polymerase II general transcription initiation factor activity
molecular_function	GO:0003713	transcription coactivator activity
molecular_function	GO:0003743	translation initiation factor activity