Cucsat.G2892.T1 (mRNA) Cucumber (B10) v3

Overview
NameCucsat.G2892.T1
TypemRNA
OrganismCucumis sativus L. var. sativus cv B10 (Cucumber (B10) v3)
DescriptionU1 small nuclear ribonucleoprotein C
Locationctg1041: 4645918 .. 4649205 (-)
RNA-Seq ExpressionCucsat.G2892.T1
SyntenyCucsat.G2892.T1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
GTATTGAAAATTCGAATCGAAAATAAAACCCAATACCTTCTCCTGCAAAAAGACTAAGCTTCTCTCTCTTCTTCCCTTTCTCGCAGAGTCGCTGATAGGGTTTTTGTTGGGTCTGCCATTGTTGCTTCTTCTTTGAGCTCTTACACCGCTATGCCTCGGTTCGTTCTTCCATATTCTTTTTCTTCCAGCCCTTATTACTTTATCCTTCAATCAAATTTAATCATCTCTCCGTTTCTCTCTCCATAGTTAGTGATGTGATCTTGTTGTGTATATGCAGGTATTATTGTGACTATTGCGATACGTATCTGACCCATGATTCTGTAAGTTATCCTCTTCTTATTTTCAGATGATAATGTCATTTCCGTTTCGTTTGACCATTGCCTACCTTGCTCGCCATTTTTTTTTTTGTTTATTTTCGTTTTTTTTGTTCGTTGATGCTGTAGTTTCTTGATGAGTGATGTTTTTGGGTTGATAATTCTTGGTTTTGGTTCCACATCAGTTATTCGAAAAATTGTAGGAAATTTTGGATTCATATGACCGTGGTTGCTGTTGGGATTGGATCGAATGATGAATCAATACGACTGTTCGTTGTTTTTTTTTTTTCTCATATATATATTATGATGTTTACATAAATGTGTTTTAAGAGAAGCTAGAACTTATGTTAGTAATTGAAAAGTTACAATGTTAAGGATGAGAAGACTTTCCATTAAGAATTAAATCTAAAGAAACAAGTAATGGTGAAAAGGTTTGGAGAGAGCACTCCAAGAAGCTAACTTTTGAGCGATTGATATATCTTAGACTGAATAACTTGAGCCCACAAAACTACCGTTGGTTGGCCTAGTGAATTGTGGTTGAGGTCAAGGAAGAAAGTGAGTGTAGAGGCTATTGGTTCAAACTATTGACTGCATACATAAGATTTAAAATTCTACAACTTTCCTTCAACCAAATGTAGGGTAAGGTGGTTGTGGCTTCATGTTAGTTGAGGTGTGTGCAAAACCGGACTCCACACTTGATATCCAGAAGTGAAAAGAAAAAGTGAAGAAACACTAAACCATGGCTACTATGTGTAGTTCTTGATTTCAAGCAGGATGTGTCAAACCTCTGGTTTCCTTGAAACTAACATTGTTTCAGTTATACTTGATTCTTGTGTTCTACACGCAATAATATTTAGCTCCTTAGCATTTTTTTGGCTCCCCCACCCCCCTTTTTTAAAAGGTTGGTGGGTAGAGTATTGCCTTGGGGGCAGGCTTCAGATTTTTGTCATTTATATTGAATCGGTGAATGTTTAGAGTTGCTTATATTTAGTTTTTCTTTGATGTCTCAGCCATCTGTGAGGAAGCAGCATAATGCAGGCTACAAACATAAGGTATCTTAATATTTCCCACGTCTCAGTTTAGCGTATAATTCCCTATTCCGTGGAGGTTGAGCTCATCGGGCTGGTTTAGAAATTAAACTTAATATTGTTGTTTTATGTTTTTTAAAAAACAAGCCACTTTCAGATTAAAAAGAACTTGATTGTGGTTTATTGGTTATAATTTAGAAATCGAACAACAAATTCTTAGTTTTTTGTTCATGGATTCACTCCAGGCAAACGTGCGATCATATTATCAGCAGTTCGAGGAGCAACAAACCCAAAGTTTAATTGACCAGAGGATCAAAGAGCATCTTGGTCAAGCCGCAGCATTCCAGCAGGTTGGTGCAGCTTTTAATCAACATTTACTTGGCCAAAGACCTCGTCTTCCTGTACTACCTACTCCTGTAATGCCAGGAGCTGCCCCAGGGTTAATGCCTGGAATTAGGCCTCCAGTTTTGCCAAGACCAATTCCTGGTGCTCCAGGTAATATTCACAGATTTGATATTGTTGGAGATGTAACAATTTTTTTTAATGCATATCCCTTTGACTCTGTTGATGTTATTTCACAATTTGCATTTTGAACTACTATAACCACATTGTCATGTTTTATGACTCAGTAAAAAAAATGCCTTAAAAACTTGAGAACTTAAAATAGTCAAAGTAATAACATACAAGCTTGAATAGTGGAGATATTAGATATAATAATTACTGCCAAAGTAGAATCTGGCACATATCTGTCTAGTTAAAATTATTTCTATTGTTGCTAGAACGATGTATAGTCCTTTTTTCAACAAACAAAAGACCAAACTTTGTTAGAACGTAAGATGGAAGATGATTAGAGCGATGCAGATTTTCCTGCTCACATTCTGATGAAGTTTCTCTTTTCCTTGCTGGAAAAAAGTAATAATCATTTGAATAAAAGAAATCAGTTTAACCAGATGTAGCTACTACTATCTCTTGAAGCTCAACTAGAATACTTCAAACCGACTCGTGTCAGTTAGTGACGTTGTTTTTGCTGATTTCGGCTTGTGCTTCCATTCATTACTAAATGGAAGTATTTAGCATATGTCTCTAGATGACTGAATTCCTCTCCTTTGTCATTGTAGGGTACCTACCAACTCCCACAATGCCACCCATGATGGCCCCGCCTGGAGCTCCCATCCCTGGCCAAGTGAATATTCCTTCCAGGCCACCTCCTCCAGCACCACTTCCAGGGAGTGCACCTCAACCTTCTTCAACCAATGGTGCACCATTGGCTGCACCGTCGACATACCAAGCAAACCCAGCCGCACCAGGAAGTGGAGGGTATGATAGTTTCACCTCCATGGCTCAACCTTCCTCTGAGTCTAACCATTAGAGCTCCTACTTGTGCTGTTTATGTATGATATCCAAAGCTCTTCTAATGCAGATTGTGACCAACATTTTTTAAAAATCTGAAGCAAAATTTGGAGCCTTTGATATTAAATGTAGAAAAGTTTTTCTAAATGAGCAAAGGAAATAATTTTTGTGGTTGATTCCTTGCTACTTGTTTGGAGGTAGAATACGTAGTGTGATTATATGGTCAAATGGGTGATTCTGAATCCGTTAAAACACAACGGTTTCGATTTTAGTTTTCTTTTCATAATTTCTAGATTTTGGGAATGGAATGTATTTGATGTTTATTTGCTCCCCTTTAATGTCTGATTTTCTTTTAAAAATTGTTGCTGATTATGGAAACAGTAGGTTGACTTTTTTTTTTGGAGAGAGTGACCAACCCGACTTTCGTTTACTTTGACTAATGTCACGAGCCAAACTGCATACTGAAAAGAACTTGTCAAATATTTAATTTTAAGTTAATGAACATAGATTATGCTCATTTCTCTTGAAGACCTTCATTTTGTCCAGTCTTAATTGACCTTTATTAAACACTAATCTATTCGACAATGGTTCCAAAT

Coding sequence (CDS)

ATGCCTCGGTATTATTGTGACTATTGCGATACGTATCTGACCCATGATTCTCCATCTGTGAGGAAGCAGCATAATGCAGGCTACAAACATAAGGCAAACGTGCGATCATATTATCAGCAGTTCGAGGAGCAACAAACCCAAAGTTTAATTGACCAGAGGATCAAAGAGCATCTTGGTCAAGCCGCAGCATTCCAGCAGGTTGGTGCAGCTTTTAATCAACATTTACTTGGCCAAAGACCTCGTCTTCCTGTACTACCTACTCCTGTAATGCCAGGAGCTGCCCCAGGGTTAATGCCTGGAATTAGGCCTCCAGTTTTGCCAAGACCAATTCCTGGTGCTCCAGGGTACCTACCAACTCCCACAATGCCACCCATGATGGCCCCGCCTGGAGCTCCCATCCCTGGCCAAGTGAATATTCCTTCCAGGCCACCTCCTCCAGCACCACTTCCAGGGAGTGCACCTCAACCTTCTTCAACCAATGGTGCACCATTGGCTGCACCGTCGACATACCAAGCAAACCCAGCCGCACCAGGAAGTGGAGGGTATGATAGTTTCACCTCCATGGCTCAACCTTCCTCTGAGTCTAACCATTAG

Protein sequence

MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQAAAFQQVGAAFNQHLLGQRPRLPVLPTPVMPGAAPGLMPGIRPPVLPRPIPGAPGYLPTPTMPPMMAPPGAPIPGQVNIPSRPPPPAPLPGSAPQPSSTNGAPLAAPSTYQANPAAPGSGGYDSFTSMAQPSSESNH
Homology
[Close]
BLAST of Cucsat.G2892.T1 vs. ExPASy Swiss-Prot
Match: F6HQ26 (U1 small nuclear ribonucleoprotein C OS=Vitis vinifera OX=29760 GN=VIT_07s0104g01170 PE=3 SV=1)

HSP 1 Score: 245.0 bits (624), Expect = 7.2e-64
Identity = 148/216 (68.52%), Postives = 163/216 (75.46%), Query Frame = 0 

Query: 1   MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQ 60
           MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQ
Sbjct: 1   MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQ 60

Query: 61  AAAFQQVGAAFNQHLLG-----QRPRLPVLPTPVMP--GAAP-----GLMPGIRPPVLPR 120
            AAFQQVGAA+NQHL+       RPRLPVLPTP MP  G+AP      L+PG+RPPVLPR
Sbjct: 61  TAAFQQVGAAYNQHLVSFPGNPPRPRLPVLPTPGMPVAGSAPLPMNSPLVPGMRPPVLPR 120

Query: 121 PIPGAPGYLPTPTMPPMMAPPGA---PIPGQVNIPSRPP----PPAPLPGSAPQPSSTNG 180
           P+PGAPGY+P P MP MMAPPGA   P+P   ++P RPP    PPA +PGS   P+S   
Sbjct: 121 PVPGAPGYMPAPGMPSMMAPPGAPSMPMPPLNSLP-RPPTMNVPPA-VPGSTSTPTSGGA 180

Query: 181 APLAAPSTYQANPAAPGSGGYDSFTSMAQPSSESNH 198
             +     YQANPA P SGG+DSF   AQ   E+NH
Sbjct: 181 PSMMTQPMYQANPAGPTSGGFDSFNINAQ-GPEANH 213

[Close]
BLAST of Cucsat.G2892.T1 vs. ExPASy Swiss-Prot
Match: C5XYW4 (U1 small nuclear ribonucleoprotein C-2 OS=Sorghum bicolor OX=4558 GN=Sb04g028260 PE=3 SV=1)

HSP 1 Score: 199.9 bits (507), Expect = 2.7e-50
Identity = 137/230 (59.57%), Postives = 151/230 (65.65%), Query Frame = 0 

Query: 1   MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQ 60
           MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVR+YYQQFEEQQTQSLIDQRIKEHLGQ
Sbjct: 1   MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRTYYQQFEEQQTQSLIDQRIKEHLGQ 60

Query: 61  AAAFQQVGAAFNQHLLG-----QRPRLPVLPTPVMPGAAP--GLMPGIRPPVLPRP---- 120
           AAAF Q GA FNQH+L       RPRLP+LPTP MP   P   LMPG+RPP+LP P    
Sbjct: 61  AAAF-QAGAPFNQHMLAFPGAVARPRLPILPTPGMPHGFPQAPLMPGVRPPILPAPGVPG 120

Query: 121 IPGAPGYLPTPTMPP-MMAPPGAPIPGQVNIPSRPP-------PPAPLPGSAPQPSS-TN 180
            PGAP  +P P  PP  M  PGAP PG +  P  PP        P P P + P P+S   
Sbjct: 121 YPGAPPTMPQPGAPPGSMPQPGAP-PGSMPQPGAPPGSMPMQMAPLPRPPTLPPPTSGVP 180

Query: 181 GAPL----AAPSTYQANPAAPG---SGGYDSFTSMAQPS------SESNH 198
           GAP+    A P+ YQANP AP    SG   +  +  QP+      SE NH
Sbjct: 181 GAPIPNSAAPPAIYQANPPAPAGPTSGAPPAPPTAPQPAFSYALPSEGNH 228

[Close]
BLAST of Cucsat.G2892.T1 vs. ExPASy Swiss-Prot
Match: Q56XE4 (U1 small nuclear ribonucleoprotein C OS=Arabidopsis thaliana OX=3702 GN=At4g03120 PE=2 SV=1)

HSP 1 Score: 199.1 bits (505), Expect = 4.6e-50
Identity = 127/210 (60.48%), Postives = 142/210 (67.62%), Query Frame = 0 

Query: 1   MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQ 60
           MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVR YYQQFEEQQTQSLIDQRIKEHLGQ
Sbjct: 1   MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRIYYQQFEEQQTQSLIDQRIKEHLGQ 60

Query: 61  AAAFQQVGAAFNQHLLGQRPRLPVLPTPVMPGAAPGLMP-GIRPPVLPRPIPGAPGYLPT 120
              +QQVGA FNQH+L  RPR P++         PG MP G+RPPVLPRP+    GY+P 
Sbjct: 61  TGGYQQVGAVFNQHMLA-RPRPPMM-------LPPGSMPMGMRPPVLPRPMMPPQGYMPP 120

Query: 121 PTMPPMMAPPGAPI-PGQVNIPSRPPPPAPLPGS-------APQPSSTNGAP-----LAA 180
           P +P MMAPPGAP+ P   N   RPP  AP+PG        AP P    G P     L  
Sbjct: 121 PGVPQMMAPPGAPLPPPPQNGILRPPGMAPIPGQGGGPPGMAPIPGQGGGPPPNYNGLPP 180

Query: 181 PSTYQANPAAPGSGGYDS-FTSMAQPSSES 196
           P  Y  NPAAP SG +++   +   PS+ES
Sbjct: 181 PPPYHTNPAAPPSGNFNNPNLNNPNPSAES 202

[Close]
BLAST of Cucsat.G2892.T1 vs. ExPASy Swiss-Prot
Match: C5XZK6 (U1 small nuclear ribonucleoprotein C-1 OS=Sorghum bicolor OX=4558 GN=Sb04g009880 PE=3 SV=1)

HSP 1 Score: 196.1 bits (497), Expect = 3.9e-49
Identity = 140/233 (60.09%), Postives = 153/233 (65.67%), Query Frame = 0 

Query: 1   MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQ 60
           MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVR+YYQQFEEQQTQSLIDQRIKEHLGQ
Sbjct: 1   MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRTYYQQFEEQQTQSLIDQRIKEHLGQ 60

Query: 61  AAAFQQVGAAFNQHLLG-----QRPRLPVLPTPVMPGA---APG--LMPGIRPPVLPRP- 120
           AAAF Q GA FNQH+L       RPRLP+LPTP MP     APG  LMPG+RPP+LP P 
Sbjct: 61  AAAF-QAGAPFNQHMLTFPGAVARPRLPILPTPGMPHGFPQAPGAPLMPGVRPPILPAPG 120

Query: 121 IPGAPGYLPT---PTMPP-MMAPPGAPIPGQVNIPSRPP-------PPAPLPGSAPQPSS 180
           IPG PG  PT   P  PP  M  PGAP PG +  P  PP        P P P + P P+S
Sbjct: 121 IPGYPGGPPTMLQPGAPPGSMPQPGAP-PGSMPQPGAPPGSMPMQMAPLPRPPTLPPPTS 180

Query: 181 -TNGAPL----AAPSTYQANPAAPG---SGGYDSFTSMAQPS------SESNH 198
              GAP+    A P+ YQ NP AP    SG   +  +  QP+      SE NH
Sbjct: 181 GVPGAPIPNSAAPPAIYQTNPPAPAGPTSGAPPAPPTAPQPAFSYAQPSEGNH 231

[Close]
BLAST of Cucsat.G2892.T1 vs. ExPASy Swiss-Prot
Match: Q32PA0 (U1 small nuclear ribonucleoprotein C OS=Bos taurus OX=9913 GN=SNRPC PE=2 SV=2)

HSP 1 Score: 93.6 bits (231), Expect = 2.7e-18
Identity = 66/153 (43.14%), Postives = 82/153 (53.59%), Query Frame = 0 

Query: 1   MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQ 60
           MP++YCDYCDTYLTHDSPSVRK H +G KHK NV+ YYQ++ E+Q QSLID+        
Sbjct: 1   MPKFYCDYCDTYLTHDSPSVRKTHCSGRKHKENVKDYYQKWMEEQAQSLIDK-------T 60

Query: 61  AAAFQQVGAAFNQHLLGQRPRLPVLPTPVMPG-AAPGLMPGIR---PPVLPRPIPGAPGY 120
            AAFQQ                 + P P +PG   PG+MP      PP++P   P  PG 
Sbjct: 61  TAAFQQGKIPPTPFSAPPPAGAMIPPPPSLPGPPRPGMMPAPHMGGPPMMPMMGPPPPGM 120

Query: 121 LPTPTMPPMMAPPGAPIPGQVNIPSRPPPPAPL 150
           +P    P M  P G  +P     P   PP  P+
Sbjct: 121 MPVGPAPGMRPPMGGHMPMMPGPPMMRPPARPM 146

[Close]
BLAST of Cucsat.G2892.T1 vs. NCBI nr
Match: XP_004148886.1 (U1 small nuclear ribonucleoprotein C [Cucumis sativus] >KGN44835.1 hypothetical protein Csa_015811 [Cucumis sativus])

HSP 1 Score: 380 bits (977), Expect = 6.15e-133
Identity = 197/197 (100.00%), Postives = 197/197 (100.00%), Query Frame = 0 

Query: 1   MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQ 60
           MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQ
Sbjct: 1   MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQ 60

Query: 61  AAAFQQVGAAFNQHLLGQRPRLPVLPTPVMPGAAPGLMPGIRPPVLPRPIPGAPGYLPTP 120
           AAAFQQVGAAFNQHLLGQRPRLPVLPTPVMPGAAPGLMPGIRPPVLPRPIPGAPGYLPTP
Sbjct: 61  AAAFQQVGAAFNQHLLGQRPRLPVLPTPVMPGAAPGLMPGIRPPVLPRPIPGAPGYLPTP 120

Query: 121 TMPPMMAPPGAPIPGQVNIPSRPPPPAPLPGSAPQPSSTNGAPLAAPSTYQANPAAPGSG 180
           TMPPMMAPPGAPIPGQVNIPSRPPPPAPLPGSAPQPSSTNGAPLAAPSTYQANPAAPGSG
Sbjct: 121 TMPPMMAPPGAPIPGQVNIPSRPPPPAPLPGSAPQPSSTNGAPLAAPSTYQANPAAPGSG 180

Query: 181 GYDSFTSMAQPSSESNH 197
           GYDSFTSMAQPSSESNH
Sbjct: 181 GYDSFTSMAQPSSESNH 197

[Close]
BLAST of Cucsat.G2892.T1 vs. NCBI nr
Match: XP_008451425.1 (PREDICTED: U1 small nuclear ribonucleoprotein C [Cucumis melo] >KAA0057542.1 U1 small nuclear ribonucleoprotein C [Cucumis melo var. makuwa] >TYK18264.1 U1 small nuclear ribonucleoprotein C [Cucumis melo var. makuwa])

HSP 1 Score: 378 bits (971), Expect = 5.05e-132
Identity = 195/197 (98.98%), Postives = 197/197 (100.00%), Query Frame = 0 

Query: 1   MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQ 60
           MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQ
Sbjct: 1   MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQ 60

Query: 61  AAAFQQVGAAFNQHLLGQRPRLPVLPTPVMPGAAPGLMPGIRPPVLPRPIPGAPGYLPTP 120
           AAAFQQVGAAFNQHLLGQRPRLPVLPTPV+PGAAPGLMPGIRPPVLPRPIPGAPGYLPTP
Sbjct: 61  AAAFQQVGAAFNQHLLGQRPRLPVLPTPVIPGAAPGLMPGIRPPVLPRPIPGAPGYLPTP 120

Query: 121 TMPPMMAPPGAPIPGQVNIPSRPPPPAPLPGSAPQPSSTNGAPLAAPSTYQANPAAPGSG 180
           TMPPMMAPPGAPIPGQVNIPSRPPPPAP+PGSAPQPSSTNGAPLAAPSTYQANPAAPGSG
Sbjct: 121 TMPPMMAPPGAPIPGQVNIPSRPPPPAPIPGSAPQPSSTNGAPLAAPSTYQANPAAPGSG 180

Query: 181 GYDSFTSMAQPSSESNH 197
           GYDSFTSMAQPSSESNH
Sbjct: 181 GYDSFTSMAQPSSESNH 197

[Close]
BLAST of Cucsat.G2892.T1 vs. NCBI nr
Match: XP_038899936.1 (U1 small nuclear ribonucleoprotein C isoform X1 [Benincasa hispida])

HSP 1 Score: 359 bits (921), Expect = 2.05e-124
Identity = 185/197 (93.91%), Postives = 192/197 (97.46%), Query Frame = 0 

Query: 1   MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQ 60
           MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQ
Sbjct: 1   MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQ 60

Query: 61  AAAFQQVGAAFNQHLLGQRPRLPVLPTPVMPGAAPGLMPGIRPPVLPRPIPGAPGYLPTP 120
           AAAFQQVGAA+NQHLLGQRPRLPVLPTPVMPGAAPGLMPGIRPPVLPRP+PGAPGYLP P
Sbjct: 61  AAAFQQVGAAYNQHLLGQRPRLPVLPTPVMPGAAPGLMPGIRPPVLPRPVPGAPGYLPAP 120

Query: 121 TMPPMMAPPGAPIPGQVNIPSRPPPPAPLPGSAPQPSSTNGAPLAAPSTYQANPAAPGSG 180
           TMPPMMAPPGAP+PGQVNIP+RPPPPAP+PGSAPQPSSTNGAPLA PS YQANPAAPGSG
Sbjct: 121 TMPPMMAPPGAPMPGQVNIPARPPPPAPVPGSAPQPSSTNGAPLAPPSMYQANPAAPGSG 180

Query: 181 GYDSFTSMAQPSSESNH 197
           GY+SFT+MAQPS E NH
Sbjct: 181 GYESFTTMAQPS-EPNH 196

[Close]
BLAST of Cucsat.G2892.T1 vs. NCBI nr
Match: KAG6593155.1 (U1 small nuclear ribonucleoprotein C, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 352 bits (902), Expect = 1.61e-121
Identity = 181/196 (92.35%), Postives = 187/196 (95.41%), Query Frame = 0 

Query: 1   MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQ 60
           MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQ
Sbjct: 1   MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQ 60

Query: 61  AAAFQQVGAAFNQHLLGQRPRLPVLPTPVMPGAAPGLMPGIRPPVLPRPIPGAPGYLPTP 120
           AAAFQQVGAA+NQHLLGQRPRLPVLPTPVMPG  PGLMPGIRPPV PRP+PGAPGYLP P
Sbjct: 61  AAAFQQVGAAYNQHLLGQRPRLPVLPTPVMPGGVPGLMPGIRPPVFPRPVPGAPGYLPNP 120

Query: 121 TMPPMMAPPGAPIPGQVNIPSRPPPPAPLPGSAPQPSSTNGAPLAAPSTYQANPAAPGSG 180
           TMPPMMAPPGA +PGQVN+PSRPPPPAP+PGS PQPSSTNGAPL AP TYQANPAAPGSG
Sbjct: 121 TMPPMMAPPGALMPGQVNVPSRPPPPAPIPGSTPQPSSTNGAPLTAPQTYQANPAAPGSG 180

Query: 181 GYDSFTSMAQPSSESN 196
           GYDSFT+MAQPS ESN
Sbjct: 181 GYDSFTTMAQPS-ESN 195

[Close]
BLAST of Cucsat.G2892.T1 vs. NCBI nr
Match: XP_023515032.1 (U1 small nuclear ribonucleoprotein C [Cucurbita pepo subsp. pepo])

HSP 1 Score: 350 bits (898), Expect = 6.56e-121
Identity = 182/196 (92.86%), Postives = 187/196 (95.41%), Query Frame = 0 

Query: 1   MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQ 60
           MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQ
Sbjct: 1   MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQ 60

Query: 61  AAAFQQVGAAFNQHLLGQRPRLPVLPTPVMPGAAPGLMPGIRPPVLPRPIPGAPGYLPTP 120
           AAAFQQVGAA+NQHLLGQRPRLPVLPTPVMPG APGLMPGIRPPV PRP+PGAPGYLP P
Sbjct: 61  AAAFQQVGAAYNQHLLGQRPRLPVLPTPVMPGGAPGLMPGIRPPVFPRPLPGAPGYLPNP 120

Query: 121 TMPPMMAPPGAPIPGQVNIPSRPPPPAPLPGSAPQPSSTNGAPLAAPSTYQANPAAPGSG 180
           TMPPMMAPPGA +PGQVNIPSRPPPPAP+PGS  QPSSTNGAPL AP TYQANPAAPGSG
Sbjct: 121 TMPPMMAPPGALMPGQVNIPSRPPPPAPIPGSTQQPSSTNGAPLTAPQTYQANPAAPGSG 180

Query: 181 GYDSFTSMAQPSSESN 196
           GYDSFT+MAQPS ESN
Sbjct: 181 GYDSFTTMAQPS-ESN 195

[Close]
BLAST of Cucsat.G2892.T1 vs. ExPASy TrEMBL
Match: A0A0A0K515 (U1 small nuclear ribonucleoprotein C OS=Cucumis sativus OX=3659 GN=Csa_7G390140 PE=3 SV=1)

HSP 1 Score: 380 bits (977), Expect = 2.98e-133
Identity = 197/197 (100.00%), Postives = 197/197 (100.00%), Query Frame = 0 

Query: 1   MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQ 60
           MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQ
Sbjct: 1   MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQ 60

Query: 61  AAAFQQVGAAFNQHLLGQRPRLPVLPTPVMPGAAPGLMPGIRPPVLPRPIPGAPGYLPTP 120
           AAAFQQVGAAFNQHLLGQRPRLPVLPTPVMPGAAPGLMPGIRPPVLPRPIPGAPGYLPTP
Sbjct: 61  AAAFQQVGAAFNQHLLGQRPRLPVLPTPVMPGAAPGLMPGIRPPVLPRPIPGAPGYLPTP 120

Query: 121 TMPPMMAPPGAPIPGQVNIPSRPPPPAPLPGSAPQPSSTNGAPLAAPSTYQANPAAPGSG 180
           TMPPMMAPPGAPIPGQVNIPSRPPPPAPLPGSAPQPSSTNGAPLAAPSTYQANPAAPGSG
Sbjct: 121 TMPPMMAPPGAPIPGQVNIPSRPPPPAPLPGSAPQPSSTNGAPLAAPSTYQANPAAPGSG 180

Query: 181 GYDSFTSMAQPSSESNH 197
           GYDSFTSMAQPSSESNH
Sbjct: 181 GYDSFTSMAQPSSESNH 197

[Close]
BLAST of Cucsat.G2892.T1 vs. ExPASy TrEMBL
Match: A0A5A7UNW2 (U1 small nuclear ribonucleoprotein C OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold411G002060 PE=3 SV=1)

HSP 1 Score: 378 bits (971), Expect = 2.45e-132
Identity = 195/197 (98.98%), Postives = 197/197 (100.00%), Query Frame = 0 

Query: 1   MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQ 60
           MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQ
Sbjct: 1   MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQ 60

Query: 61  AAAFQQVGAAFNQHLLGQRPRLPVLPTPVMPGAAPGLMPGIRPPVLPRPIPGAPGYLPTP 120
           AAAFQQVGAAFNQHLLGQRPRLPVLPTPV+PGAAPGLMPGIRPPVLPRPIPGAPGYLPTP
Sbjct: 61  AAAFQQVGAAFNQHLLGQRPRLPVLPTPVIPGAAPGLMPGIRPPVLPRPIPGAPGYLPTP 120

Query: 121 TMPPMMAPPGAPIPGQVNIPSRPPPPAPLPGSAPQPSSTNGAPLAAPSTYQANPAAPGSG 180
           TMPPMMAPPGAPIPGQVNIPSRPPPPAP+PGSAPQPSSTNGAPLAAPSTYQANPAAPGSG
Sbjct: 121 TMPPMMAPPGAPIPGQVNIPSRPPPPAPIPGSAPQPSSTNGAPLAAPSTYQANPAAPGSG 180

Query: 181 GYDSFTSMAQPSSESNH 197
           GYDSFTSMAQPSSESNH
Sbjct: 181 GYDSFTSMAQPSSESNH 197

[Close]
BLAST of Cucsat.G2892.T1 vs. ExPASy TrEMBL
Match: A0A1S3BS92 (U1 small nuclear ribonucleoprotein C OS=Cucumis melo OX=3656 GN=LOC103492724 PE=3 SV=1)

HSP 1 Score: 378 bits (971), Expect = 2.45e-132
Identity = 195/197 (98.98%), Postives = 197/197 (100.00%), Query Frame = 0 

Query: 1   MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQ 60
           MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQ
Sbjct: 1   MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQ 60

Query: 61  AAAFQQVGAAFNQHLLGQRPRLPVLPTPVMPGAAPGLMPGIRPPVLPRPIPGAPGYLPTP 120
           AAAFQQVGAAFNQHLLGQRPRLPVLPTPV+PGAAPGLMPGIRPPVLPRPIPGAPGYLPTP
Sbjct: 61  AAAFQQVGAAFNQHLLGQRPRLPVLPTPVIPGAAPGLMPGIRPPVLPRPIPGAPGYLPTP 120

Query: 121 TMPPMMAPPGAPIPGQVNIPSRPPPPAPLPGSAPQPSSTNGAPLAAPSTYQANPAAPGSG 180
           TMPPMMAPPGAPIPGQVNIPSRPPPPAP+PGSAPQPSSTNGAPLAAPSTYQANPAAPGSG
Sbjct: 121 TMPPMMAPPGAPIPGQVNIPSRPPPPAPIPGSAPQPSSTNGAPLAAPSTYQANPAAPGSG 180

Query: 181 GYDSFTSMAQPSSESNH 197
           GYDSFTSMAQPSSESNH
Sbjct: 181 GYDSFTSMAQPSSESNH 197

[Close]
BLAST of Cucsat.G2892.T1 vs. ExPASy TrEMBL
Match: A0A6J1KWY5 (U1 small nuclear ribonucleoprotein C OS=Cucurbita maxima OX=3661 GN=LOC111497890 PE=3 SV=1)

HSP 1 Score: 350 bits (897), Expect = 4.51e-121
Identity = 181/196 (92.35%), Postives = 187/196 (95.41%), Query Frame = 0 

Query: 1   MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQ 60
           MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQ
Sbjct: 1   MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQ 60

Query: 61  AAAFQQVGAAFNQHLLGQRPRLPVLPTPVMPGAAPGLMPGIRPPVLPRPIPGAPGYLPTP 120
           AAAFQQVGAA+NQHLLGQRPRLPVLPTPVMPG APGLMPGIRPPV PRP+PGAPGYLP P
Sbjct: 61  AAAFQQVGAAYNQHLLGQRPRLPVLPTPVMPGGAPGLMPGIRPPVFPRPVPGAPGYLPNP 120

Query: 121 TMPPMMAPPGAPIPGQVNIPSRPPPPAPLPGSAPQPSSTNGAPLAAPSTYQANPAAPGSG 180
           TMPPMMAPPGA +PGQVN+PSRPPPPAP+PGS  QPSSTNGAPL AP TYQANPAAPGSG
Sbjct: 121 TMPPMMAPPGALMPGQVNVPSRPPPPAPIPGSTQQPSSTNGAPLTAPPTYQANPAAPGSG 180

Query: 181 GYDSFTSMAQPSSESN 196
           GYDSFT+MAQPS ESN
Sbjct: 181 GYDSFTTMAQPS-ESN 195

[Close]
BLAST of Cucsat.G2892.T1 vs. ExPASy TrEMBL
Match: A0A6J1H7P8 (U1 small nuclear ribonucleoprotein C OS=Cucurbita moschata OX=3662 GN=LOC111460839 PE=3 SV=1)

HSP 1 Score: 349 bits (895), Expect = 9.10e-121
Identity = 181/196 (92.35%), Postives = 187/196 (95.41%), Query Frame = 0 

Query: 1   MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQ 60
           MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQ
Sbjct: 1   MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQ 60

Query: 61  AAAFQQVGAAFNQHLLGQRPRLPVLPTPVMPGAAPGLMPGIRPPVLPRPIPGAPGYLPTP 120
           AAAFQQVGAA+NQHLLGQRPRLPVLPTPVMPG APGLMPGIRPPV PRP+PGAPGYLP P
Sbjct: 61  AAAFQQVGAAYNQHLLGQRPRLPVLPTPVMPGGAPGLMPGIRPPVFPRPLPGAPGYLPNP 120

Query: 121 TMPPMMAPPGAPIPGQVNIPSRPPPPAPLPGSAPQPSSTNGAPLAAPSTYQANPAAPGSG 180
           TMPPMMAPPGA +PGQVN+PSRPPPPAP+PGS PQ SSTNGAPL AP TYQANPAAPGSG
Sbjct: 121 TMPPMMAPPGALMPGQVNVPSRPPPPAPIPGSTPQLSSTNGAPLTAPQTYQANPAAPGSG 180

Query: 181 GYDSFTSMAQPSSESN 196
           GYDSFT+MAQPS ESN
Sbjct: 181 GYDSFTTMAQPS-ESN 195

[Close]
BLAST of Cucsat.G2892.T1 vs. TAIR 10
Match: AT4G03120.1 (C2H2 and C2HC zinc fingers superfamily protein )

HSP 1 Score: 199.1 bits (505), Expect = 3.2e-51
Identity = 127/210 (60.48%), Postives = 142/210 (67.62%), Query Frame = 0 

Query: 1   MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQ 60
           MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVR YYQQFEEQQTQSLIDQRIKEHLGQ
Sbjct: 1   MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRIYYQQFEEQQTQSLIDQRIKEHLGQ 60

Query: 61  AAAFQQVGAAFNQHLLGQRPRLPVLPTPVMPGAAPGLMP-GIRPPVLPRPIPGAPGYLPT 120
              +QQVGA FNQH+L  RPR P++         PG MP G+RPPVLPRP+    GY+P 
Sbjct: 61  TGGYQQVGAVFNQHMLA-RPRPPMM-------LPPGSMPMGMRPPVLPRPMMPPQGYMPP 120

Query: 121 PTMPPMMAPPGAPI-PGQVNIPSRPPPPAPLPGS-------APQPSSTNGAP-----LAA 180
           P +P MMAPPGAP+ P   N   RPP  AP+PG        AP P    G P     L  
Sbjct: 121 PGVPQMMAPPGAPLPPPPQNGILRPPGMAPIPGQGGGPPGMAPIPGQGGGPPPNYNGLPP 180

Query: 181 PSTYQANPAAPGSGGYDS-FTSMAQPSSES 196
           P  Y  NPAAP SG +++   +   PS+ES
Sbjct: 181 PPPYHTNPAAPPSGNFNNPNLNNPNPSAES 202

The following BLAST results are available for this feature:
BLAST of Cucsat.G2892.T1 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
F6HQ267.2e-6468.52U1 small nuclear ribonucleoprotein C OS=Vitis vinifera OX=29760 GN=VIT_07s0104g0... [more]
C5XYW42.7e-5059.57U1 small nuclear ribonucleoprotein C-2 OS=Sorghum bicolor OX=4558 GN=Sb04g028260... [more]
Q56XE44.6e-5060.48U1 small nuclear ribonucleoprotein C OS=Arabidopsis thaliana OX=3702 GN=At4g0312... [more]
C5XZK63.9e-4960.09U1 small nuclear ribonucleoprotein C-1 OS=Sorghum bicolor OX=4558 GN=Sb04g009880... [more]
Q32PA02.7e-1843.14U1 small nuclear ribonucleoprotein C OS=Bos taurus OX=9913 GN=SNRPC PE=2 SV=2[more]
BLAST of Cucsat.G2892.T1 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_004148886.16.15e-133100.00U1 small nuclear ribonucleoprotein C [Cucumis sativus] >KGN44835.1 hypothetical ... [more]
XP_008451425.15.05e-13298.98PREDICTED: U1 small nuclear ribonucleoprotein C [Cucumis melo] >KAA0057542.1 U1 ... [more]
XP_038899936.12.05e-12493.91U1 small nuclear ribonucleoprotein C isoform X1 [Benincasa hispida][more]
KAG6593155.11.61e-12192.35U1 small nuclear ribonucleoprotein C, partial [Cucurbita argyrosperma subsp. sor... [more]
XP_023515032.16.56e-12192.86U1 small nuclear ribonucleoprotein C [Cucurbita pepo subsp. pepo][more]
BLAST of Cucsat.G2892.T1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K5152.98e-133100.00U1 small nuclear ribonucleoprotein C OS=Cucumis sativus OX=3659 GN=Csa_7G390140 ... [more]
A0A5A7UNW22.45e-13298.98U1 small nuclear ribonucleoprotein C OS=Cucumis melo var. makuwa OX=1194695 GN=E... [more]
A0A1S3BS922.45e-13298.98U1 small nuclear ribonucleoprotein C OS=Cucumis melo OX=3656 GN=LOC103492724 PE=... [more]
A0A6J1KWY54.51e-12192.35U1 small nuclear ribonucleoprotein C OS=Cucurbita maxima OX=3661 GN=LOC111497890... [more]
A0A6J1H7P89.10e-12192.35U1 small nuclear ribonucleoprotein C OS=Cucurbita moschata OX=3662 GN=LOC1114608... [more]
BLAST of Cucsat.G2892.T1 vs. TAIR 10
Match NameE-valueIdentityDescription
AT4G03120.13.2e-5160.48C2H2 and C2HC zinc fingers superfamily protein [more]
InterPro
Analysis Name: InterPro Annotations of Cucumber (B10) v3
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003604Matrin/U1-C-like, C2H2-type zinc fingerSMARTSM00451ZnF_U1_5coord: 1..37
e-value: 1.4E-12
score: 57.8
NoneNo IPR availableGENE3D3.30.160.60Classic Zinc Fingercoord: 1..61
e-value: 4.4E-30
score: 105.5
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 121..153
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 183..197
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 154..175
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 121..197
NoneNo IPR availablePANTHERPTHR31148:SF2U1 SMALL NUCLEAR RIBONUCLEOPROTEIN Ccoord: 1..178
IPR013085U1-C, C2H2-type zinc fingerPFAMPF06220zf-U1coord: 1..38
e-value: 5.4E-22
score: 77.3
IPR017340U1 small nuclear ribonucleoprotein CPIRSFPIRSF037969U1-Ccoord: 1..197
e-value: 1.7E-39
score: 134.8
IPR017340U1 small nuclear ribonucleoprotein CPANTHERPTHR31148U1 SMALL NUCLEAR RIBONUCLEOPROTEIN Ccoord: 1..178
IPR017340U1 small nuclear ribonucleoprotein CHAMAPMF_03153U1_Ccoord: 1..168
score: 11.912981
IPR000690Matrin/U1-C, C2H2-type zinc fingerPROSITEPS50171ZF_MATRINcoord: 4..36
score: 12.522273
IPR036236Zinc finger C2H2 superfamilySUPERFAMILY57667beta-beta-alpha zinc fingerscoord: 1..55

Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Cucsat.G2892Cucsat.G2892gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Cucsat.G2892.T1.E1Cucsat.G2892.T1.E1exon
Cucsat.G2892.T1.E2Cucsat.G2892.T1.E2exon
Cucsat.G2892.T1.E3Cucsat.G2892.T1.E3exon
Cucsat.G2892.T1.E4Cucsat.G2892.T1.E4exon
Cucsat.G2892.T1.E5Cucsat.G2892.T1.E5exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Cucsat.G2892.T1.C5Cucsat.G2892.T1.C5CDS
Cucsat.G2892.T1.C4Cucsat.G2892.T1.C4CDS
Cucsat.G2892.T1.C3Cucsat.G2892.T1.C3CDS
Cucsat.G2892.T1.C2Cucsat.G2892.T1.C2CDS
Cucsat.G2892.T1.C1Cucsat.G2892.T1.C1CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Cucsat.G2892.T1Cucsat.G2892.T1-proteinpolypeptide


GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0000398 mRNA splicing, via spliceosome
biological_process GO:0000387 spliceosomal snRNP assembly
biological_process GO:0000395 mRNA 5'-splice site recognition
cellular_component GO:0005634 nucleus
cellular_component GO:0005685 U1 snRNP
cellular_component GO:0000243 commitment complex
cellular_component GO:0071004 U2-type prespliceosome
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0008270 zinc ion binding
molecular_function GO:0003729 mRNA binding
molecular_function GO:0030627 pre-mRNA 5'-splice site binding
molecular_function GO:0030619 U1 snRNA binding