Cucsat.G2892 (gene) Cucumber (B10) v3

Overview
NameCucsat.G2892
Typegene
OrganismCucumis sativus L. var. sativus cv B10 (Cucumber (B10) v3)
DescriptionU1 small nuclear ribonucleoprotein C
Locationctg1041: 4646697 .. 4649150 (-)
RNA-Seq ExpressionCucsat.G2892
SyntenyCucsat.G2892
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
AAGCTTCTCTCTCTTCTTCCCTTTCTCGCAGAGTCGCTGATAGGGTTTTTGTTGGGTCTGCCATTGTTGCTTCTTCTTTGAGCTCTTACACCGCTATGCCTCGGTTCGTTCTTCCATATTCTTTTTCTTCCAGCCCTTATTACTTTATCCTTCAATCAAATTTAATCATCTCTCCGTTTCTCTCTCCATAGTTAGTGATGTGATCTTGTTGTGTATATGCAGGTATTATTGTGACTATTGCGATACGTATCTGACCCATGATTCTGTAAGTTATCCTCTTCTTATTTTCAGATGATAATGTCATTTCCGTTTCGTTTGACCATTGCCTACCTTGCTCGCCATTTTTTTTTTTGTTTATTTTCGTTTTTTTTGTTCGTTGATGCTGTAGTTTCTTGATGAGTGATGTTTTTGGGTTGATAATTCTTGGTTTTGGTTCCACATCAGTTATTCGAAAAATTGTAGGAAATTTTGGATTCATATGACCGTGGTTGCTGTTGGGATTGGATCGAATGATGAATCAATACGACTGTTCGTTGTTTTTTTTTTTTCTCATATATATATTATGATGTTTACATAAATGTGTTTTAAGAGAAGCTAGAACTTATGTTAGTAATTGAAAAGTTACAATGTTAAGGATGAGAAGACTTTCCATTAAGAATTAAATCTAAAGAAACAAGTAATGGTGAAAAGGTTTGGAGAGAGCACTCCAAGAAGCTAACTTTTGAGCGATTGATATATCTTAGACTGAATAACTTGAGCCCACAAAACTACCGTTGGTTGGCCTAGTGAATTGTGGTTGAGGTCAAGGAAGAAAGTGAGTGTAGAGGCTATTGGTTCAAACTATTGACTGCATACATAAGATTTAAAATTCTACAACTTTCCTTCAACCAAATGTAGGGTAAGGTGGTTGTGGCTTCATGTTAGTTGAGGTGTGTGCAAAACCGGACTCCACACTTGATATCCAGAAGTGAAAAGAAAAAGTGAAGAAACACTAAACCATGGCTACTATGTGTAGTTCTTGATTTCAAGCAGGATGTGTCAAACCTCTGGTTTCCTTGAAACTAACATTGTTTCAGTTATACTTGATTCTTGTGTTCTACACGCAATAATATTTAGCTCCTTAGCATTTTTTTGGCTCCCCCACCCCCCTTTTTTAAAAGGTTGGTGGGTAGAGTATTGCCTTGGGGGCAGGCTTCAGATTTTTGTCATTTATATTGAATCGGTGAATGTTTAGAGTTGCTTATATTTAGTTTTTCTTTGATGTCTCAGCCATCTGTGAGGAAGCAGCATAATGCAGGCTACAAACATAAGGTATCTTAATATTTCCCACGTCTCAGTTTAGCGTATAATTCCCTATTCCGTGGAGGTTGAGCTCATCGGGCTGGTTTAGAAATTAAACTTAATATTGTTGTTTTATGTTTTTTAAAAAACAAGCCACTTTCAGATTAAAAAGAACTTGATTGTGGTTTATTGGTTATAATTTAGAAATCGAACAACAAATTCTTAGTTTTTTGTTCATGGATTCACTCCAGGCAAACGTGCGATCATATTATCAGCAGTTCGAGGAGCAACAAACCCAAAGTTTAATTGACCAGAGGATCAAAGAGCATCTTGGTCAAGCCGCAGCATTCCAGCAGGTTGGTGCAGCTTTTAATCAACATTTACTTGGCCAAAGACCTCGTCTTCCTGTACTACCTACTCCTGTAATGCCAGGAGCTGCCCCAGGGTTAATGCCTGGAATTAGGCCTCCAGTTTTGCCAAGACCAATTCCTGGTGCTCCAGGTAATATTCACAGATTTGATATTGTTGGAGATGTAACAATTTTTTTTAATGCATATCCCTTTGACTCTGTTGATGTTATTTCACAATTTGCATTTTGAACTACTATAACCACATTGTCATGTTTTATGACTCAGTAAAAAAAATGCCTTAAAAACTTGAGAACTTAAAATAGTCAAAGTAATAACATACAAGCTTGAATAGTGGAGATATTAGATATAATAATTACTGCCAAAGTAGAATCTGGCACATATCTGTCTAGTTAAAATTATTTCTATTGTTGCTAGAACGATGTATAGTCCTTTTTTCAACAAACAAAAGACCAAACTTTGTTAGAACGTAAGATGGAAGATGATTAGAGCGATGCAGATTTTCCTGCTCACATTCTGATGAAGTTTCTCTTTTCCTTGCTGGAAAAAAGTAATAATCATTTGAATAAAAGAAATCAGTTTAACCAGATGTAGCTACTACTATCTCTTGAAGCTCAACTAGAATACTTCAAACCGACTCGTGTCAGTTAGTGACGTTGTTTTTGCTGATTTCGGCTTGTGCTTCCATTCATTACTAAATGGAAGTATTTAGCATATGTCTCTAGATGACTGAATTCCTCTCCTTTGTCATTGTAGGGTACCTACCAACTCCCACAATGCCACCCATGATGGCCCCGCCTGGAGCTCCCATCCCTGGCCAAGTGAATATTCCTTCCAGGCCACCTCCTCCAGCACCACTTCCAGGGAGTGCACCTCAACCTTCTTCAACCAATGGTGCACCATTGGCTGCACCGTCGACATACCAAGCAAACCCAGCCGCACCAGGAAGTGGAGGGTATGATAGTTTCACCTCCATGGCTCAACCTTCCTCTGAGTCTAACCATTAGAGCTCCTACTTGTGCTGTTTATGTATGATATCCAAAGCTCTTCTAATGCAGATTGTGACCAACATTTTTTAAAAATCTGAAGCAAAATTTGGAGCCTTTGATATTAAATGTAGAAAAGTTTTTCTAAATGAGCAAAGGAAATAATTTTTGTGGTTGATTCCTTGCTACTTGTTTGGAGGTAGAATACGTAGTGTGATTATATGGTCAAATGGGTGATTCTGAATCCGTTAAAACACAACGGTTTCGATTTTAGTTTTCTTTTCATAATTTCTAGATTTTGGGAATGGAATGTATTTGATGTTTATTTGCTCCCCTTTAATGTCTGATTTTCTTTTAAAAATTGTTGCTGATTATGGAAACAGTAGGTTGACTTTTTTTTTTGGAGAGAGTGACCAACCCGACTTTCGTTTACTTTGACTAATGTCACGAGCCAAACTGCATACTGAAAAGAACTTGTCAAATATTTAATTTTAAGTTAATGAACATAGATTATGCTCATTTCTCTTGAAGACCTTCATTTTGTCCAGTCTTAATTGACCTTTATTAAACACTAATCTATTCGACAATGGTTCCAAATTGCTTGTTTTGTTGATAGTT

Coding sequence (CDS)

ATGTCTCAGCCATCTGTGAGGAAGCAGCATAATGCAGGCTACAAACATAAGGCAAACGTGCGATCATATTATCAGCAGTTCGAGGAGCAACAAACCCAAAGTTTAATTGACCAGAGGATCAAAGAGCATCTTGGTCAAGCCGCAGCATTCCAGCAGGTTGGTGCAGCTTTTAATCAACATTTACTTGGCCAAAGACCTCGTCTTCCTGTACTACCTACTCCTGTAATGCCAGGAGCTGCCCCAGGGTTAATGCCTGGAATTAGGCCTCCAGTTTTGCCAAGACCAATTCCTGGTGCTCCAGGGTACCTACCAACTCCCACAATGCCACCCATGATGGCCCCGCCTGGAGCTCCCATCCCTGGCCAAGTGAATATTCCTTCCAGGCCACCTCCTCCAGCACCACTTCCAGGGAGTGCACCTCAACCTTCTTCAACCAATGGTGCACCATTGGCTGCACCGTCGACATACCAAGCAAACCCAGCCGCACCAGGAAGTGGAGGGTATGATAGTTTCACCTCCATGGCTCAACCTTCCTCTGAGTCTAACCATTAG

Protein sequence

MSQPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQAAAFQQVGAAFNQHLLGQRPRLPVLPTPVMPGAAPGLMPGIRPPVLPRPIPGAPGYLPTPTMPPMMAPPGAPIPGQVNIPSRPPPPAPLPGSAPQPSSTNGAPLAAPSTYQANPAAPGSGGYDSFTSMAQPSSESNH
Homology
[Close]
BLAST of Cucsat.G2892 vs. ExPASy Swiss-Prot
Match: F6HQ26 (U1 small nuclear ribonucleoprotein C OS=Vitis vinifera OX=29760 GN=VIT_07s0104g01170 PE=3 SV=1)

HSP 1 Score: 201.1 bits (510), Expect = 1.1e-50
Identity = 104/127 (81.89%), Postives = 110/127 (86.61%), Query Frame = 0 

Query: 32  MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQ 91
           MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQ
Sbjct: 1   MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQ 60

Query: 92  AAAFQQVGAAFNQHLLG-----QRPRLPVLPTPVMP--GAAP-----GLMPGIRPPVLPR 147
            AAFQQVGAA+NQHL+       RPRLPVLPTP MP  G+AP      L+PG+RPPVLPR
Sbjct: 61  TAAFQQVGAAYNQHLVSFPGNPPRPRLPVLPTPGMPVAGSAPLPMNSPLVPGMRPPVLPR 120

[Close]
BLAST of Cucsat.G2892 vs. ExPASy Swiss-Prot
Match: C5XYW4 (U1 small nuclear ribonucleoprotein C-2 OS=Sorghum bicolor OX=4558 GN=Sb04g028260 PE=3 SV=1)

HSP 1 Score: 185.7 bits (470), Expect = 4.7e-46
Identity = 97/123 (78.86%), Postives = 103/123 (83.74%), Query Frame = 0 

Query: 32  MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQ 91
           MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVR+YYQQFEEQQTQSLIDQRIKEHLGQ
Sbjct: 1   MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRTYYQQFEEQQTQSLIDQRIKEHLGQ 60

Query: 92  AAAFQQVGAAFNQHLLG-----QRPRLPVLPTPVMPGAAP--GLMPGIRPPVLPRP-IPG 147
           AAAF Q GA FNQH+L       RPRLP+LPTP MP   P   LMPG+RPP+LP P +PG
Sbjct: 61  AAAF-QAGAPFNQHMLAFPGAVARPRLPILPTPGMPHGFPQAPLMPGVRPPILPAPGVPG 120

[Close]
BLAST of Cucsat.G2892 vs. ExPASy Swiss-Prot
Match: C5XZK6 (U1 small nuclear ribonucleoprotein C-1 OS=Sorghum bicolor OX=4558 GN=Sb04g009880 PE=3 SV=1)

HSP 1 Score: 185.3 bits (469), Expect = 6.1e-46
Identity = 100/126 (79.37%), Postives = 105/126 (83.33%), Query Frame = 0 

Query: 32  MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQ 91
           MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVR+YYQQFEEQQTQSLIDQRIKEHLGQ
Sbjct: 1   MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRTYYQQFEEQQTQSLIDQRIKEHLGQ 60

Query: 92  AAAFQQVGAAFNQHLLG-----QRPRLPVLPTPVMPGA---APG--LMPGIRPPVLPRP- 147
           AAAF Q GA FNQH+L       RPRLP+LPTP MP     APG  LMPG+RPP+LP P 
Sbjct: 61  AAAF-QAGAPFNQHMLTFPGAVARPRLPILPTPGMPHGFPQAPGAPLMPGVRPPILPAPG 120

[Close]
BLAST of Cucsat.G2892 vs. ExPASy Swiss-Prot
Match: Q56XE4 (U1 small nuclear ribonucleoprotein C OS=Arabidopsis thaliana OX=3702 GN=At4g03120 PE=2 SV=1)

HSP 1 Score: 167.9 bits (424), Expect = 1.0e-40
Identity = 86/111 (77.48%), Postives = 92/111 (82.88%), Query Frame = 0 

Query: 32  MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQ 91
           MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVR YYQQFEEQQTQSLIDQRIKEHLGQ
Sbjct: 1   MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRIYYQQFEEQQTQSLIDQRIKEHLGQ 60

Query: 92  AAAFQQVGAAFNQHLLGQRPRLPVLPTPVMPGAAPGLMP-GIRPPVLPRPI 142
              +QQVGA FNQH+L  RPR P++         PG MP G+RPPVLPRP+
Sbjct: 61  TGGYQQVGAVFNQHMLA-RPRPPMM-------LPPGSMPMGMRPPVLPRPM 103

[Close]
BLAST of Cucsat.G2892 vs. ExPASy Swiss-Prot
Match: A8XW44 (U1 small nuclear ribonucleoprotein C OS=Caenorhabditis briggsae OX=6238 GN=CBG19656 PE=3 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 7.5e-20
Identity = 56/114 (49.12%), Postives = 70/114 (61.40%), Query Frame = 0 

Query: 32  MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQ 91
           MP+YYCDYCDT+LTHDSPSVRK HN G KHK NVR +YQ++ E Q Q L+DQ       +
Sbjct: 1   MPKYYCDYCDTFLTHDSPSVRKTHNGGRKHKDNVRMFYQKWMEDQAQKLVDQ-----TAR 60

Query: 92  AAAFQQVGAAFNQHLLGQRPRLPVLPTPVMPGAAPGLMPGIRPPVLPRPIPGAP 146
           A A  ++  A  +  +G  P  PV   P+M G  PG+     P + PRP PG P
Sbjct: 61  AFATNRMHGAVPRTTMGMAPVPPVGHHPMM-GGPPGM-----PMMAPRPFPGPP 103

[Close]
BLAST of Cucsat.G2892 vs. NCBI nr
Match: XP_004148886.1 (U1 small nuclear ribonucleoprotein C [Cucumis sativus] >KGN44835.1 hypothetical protein Csa_015811 [Cucumis sativus])

HSP 1 Score: 235 bits (599), Expect = 1.05e-75
Identity = 115/117 (98.29%), Postives = 116/117 (99.15%), Query Frame = 0 

Query: 32  MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQ 91
           MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQ
Sbjct: 1   MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQ 60

Query: 92  AAAFQQVGAAFNQHLLGQRPRLPVLPTPVMPGAAPGLMPGIRPPVLPRPIPGAPGNI 148
           AAAFQQVGAAFNQHLLGQRPRLPVLPTPVMPGAAPGLMPGIRPPVLPRPIPGAPG +
Sbjct: 61  AAAFQQVGAAFNQHLLGQRPRLPVLPTPVMPGAAPGLMPGIRPPVLPRPIPGAPGYL 117

[Close]
BLAST of Cucsat.G2892 vs. NCBI nr
Match: XP_038899936.1 (U1 small nuclear ribonucleoprotein C isoform X1 [Benincasa hispida])

HSP 1 Score: 233 bits (595), Expect = 4.12e-75
Identity = 113/117 (96.58%), Postives = 116/117 (99.15%), Query Frame = 0 

Query: 32  MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQ 91
           MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQ
Sbjct: 1   MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQ 60

Query: 92  AAAFQQVGAAFNQHLLGQRPRLPVLPTPVMPGAAPGLMPGIRPPVLPRPIPGAPGNI 148
           AAAFQQVGAA+NQHLLGQRPRLPVLPTPVMPGAAPGLMPGIRPPVLPRP+PGAPG +
Sbjct: 61  AAAFQQVGAAYNQHLLGQRPRLPVLPTPVMPGAAPGLMPGIRPPVLPRPVPGAPGYL 117

[Close]
BLAST of Cucsat.G2892 vs. NCBI nr
Match: XP_008451425.1 (PREDICTED: U1 small nuclear ribonucleoprotein C [Cucumis melo] >KAA0057542.1 U1 small nuclear ribonucleoprotein C [Cucumis melo var. makuwa] >TYK18264.1 U1 small nuclear ribonucleoprotein C [Cucumis melo var. makuwa])

HSP 1 Score: 233 bits (595), Expect = 4.26e-75
Identity = 114/117 (97.44%), Postives = 116/117 (99.15%), Query Frame = 0 

Query: 32  MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQ 91
           MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQ
Sbjct: 1   MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQ 60

Query: 92  AAAFQQVGAAFNQHLLGQRPRLPVLPTPVMPGAAPGLMPGIRPPVLPRPIPGAPGNI 148
           AAAFQQVGAAFNQHLLGQRPRLPVLPTPV+PGAAPGLMPGIRPPVLPRPIPGAPG +
Sbjct: 61  AAAFQQVGAAFNQHLLGQRPRLPVLPTPVIPGAAPGLMPGIRPPVLPRPIPGAPGYL 117

[Close]
BLAST of Cucsat.G2892 vs. NCBI nr
Match: XP_023004664.1 (U1 small nuclear ribonucleoprotein C [Cucurbita maxima])

HSP 1 Score: 230 bits (587), Expect = 6.79e-74
Identity = 111/117 (94.87%), Postives = 114/117 (97.44%), Query Frame = 0 

Query: 32  MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQ 91
           MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQ
Sbjct: 1   MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQ 60

Query: 92  AAAFQQVGAAFNQHLLGQRPRLPVLPTPVMPGAAPGLMPGIRPPVLPRPIPGAPGNI 148
           AAAFQQVGAA+NQHLLGQRPRLPVLPTPVMPG APGLMPGIRPPV PRP+PGAPG +
Sbjct: 61  AAAFQQVGAAYNQHLLGQRPRLPVLPTPVMPGGAPGLMPGIRPPVFPRPVPGAPGYL 117

[Close]
BLAST of Cucsat.G2892 vs. NCBI nr
Match: XP_023515032.1 (U1 small nuclear ribonucleoprotein C [Cucurbita pepo subsp. pepo])

HSP 1 Score: 230 bits (586), Expect = 9.63e-74
Identity = 111/117 (94.87%), Postives = 114/117 (97.44%), Query Frame = 0 

Query: 32  MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQ 91
           MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQ
Sbjct: 1   MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQ 60

Query: 92  AAAFQQVGAAFNQHLLGQRPRLPVLPTPVMPGAAPGLMPGIRPPVLPRPIPGAPGNI 148
           AAAFQQVGAA+NQHLLGQRPRLPVLPTPVMPG APGLMPGIRPPV PRP+PGAPG +
Sbjct: 61  AAAFQQVGAAYNQHLLGQRPRLPVLPTPVMPGGAPGLMPGIRPPVFPRPLPGAPGYL 117

[Close]
BLAST of Cucsat.G2892 vs. ExPASy TrEMBL
Match: A0A0A0K515 (U1 small nuclear ribonucleoprotein C OS=Cucumis sativus OX=3659 GN=Csa_7G390140 PE=3 SV=1)

HSP 1 Score: 235 bits (599), Expect = 5.08e-76
Identity = 115/117 (98.29%), Postives = 116/117 (99.15%), Query Frame = 0 

Query: 32  MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQ 91
           MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQ
Sbjct: 1   MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQ 60

Query: 92  AAAFQQVGAAFNQHLLGQRPRLPVLPTPVMPGAAPGLMPGIRPPVLPRPIPGAPGNI 148
           AAAFQQVGAAFNQHLLGQRPRLPVLPTPVMPGAAPGLMPGIRPPVLPRPIPGAPG +
Sbjct: 61  AAAFQQVGAAFNQHLLGQRPRLPVLPTPVMPGAAPGLMPGIRPPVLPRPIPGAPGYL 117

[Close]
BLAST of Cucsat.G2892 vs. ExPASy TrEMBL
Match: A0A5A7UNW2 (U1 small nuclear ribonucleoprotein C OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold411G002060 PE=3 SV=1)

HSP 1 Score: 233 bits (595), Expect = 2.06e-75
Identity = 114/117 (97.44%), Postives = 116/117 (99.15%), Query Frame = 0 

Query: 32  MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQ 91
           MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQ
Sbjct: 1   MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQ 60

Query: 92  AAAFQQVGAAFNQHLLGQRPRLPVLPTPVMPGAAPGLMPGIRPPVLPRPIPGAPGNI 148
           AAAFQQVGAAFNQHLLGQRPRLPVLPTPV+PGAAPGLMPGIRPPVLPRPIPGAPG +
Sbjct: 61  AAAFQQVGAAFNQHLLGQRPRLPVLPTPVIPGAAPGLMPGIRPPVLPRPIPGAPGYL 117

[Close]
BLAST of Cucsat.G2892 vs. ExPASy TrEMBL
Match: A0A1S3BS92 (U1 small nuclear ribonucleoprotein C OS=Cucumis melo OX=3656 GN=LOC103492724 PE=3 SV=1)

HSP 1 Score: 233 bits (595), Expect = 2.06e-75
Identity = 114/117 (97.44%), Postives = 116/117 (99.15%), Query Frame = 0 

Query: 32  MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQ 91
           MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQ
Sbjct: 1   MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQ 60

Query: 92  AAAFQQVGAAFNQHLLGQRPRLPVLPTPVMPGAAPGLMPGIRPPVLPRPIPGAPGNI 148
           AAAFQQVGAAFNQHLLGQRPRLPVLPTPV+PGAAPGLMPGIRPPVLPRPIPGAPG +
Sbjct: 61  AAAFQQVGAAFNQHLLGQRPRLPVLPTPVIPGAAPGLMPGIRPPVLPRPIPGAPGYL 117

[Close]
BLAST of Cucsat.G2892 vs. ExPASy TrEMBL
Match: A0A6J1KWY5 (U1 small nuclear ribonucleoprotein C OS=Cucurbita maxima OX=3661 GN=LOC111497890 PE=3 SV=1)

HSP 1 Score: 230 bits (587), Expect = 3.29e-74
Identity = 111/117 (94.87%), Postives = 114/117 (97.44%), Query Frame = 0 

Query: 32  MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQ 91
           MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQ
Sbjct: 1   MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQ 60

Query: 92  AAAFQQVGAAFNQHLLGQRPRLPVLPTPVMPGAAPGLMPGIRPPVLPRPIPGAPGNI 148
           AAAFQQVGAA+NQHLLGQRPRLPVLPTPVMPG APGLMPGIRPPV PRP+PGAPG +
Sbjct: 61  AAAFQQVGAAYNQHLLGQRPRLPVLPTPVMPGGAPGLMPGIRPPVFPRPVPGAPGYL 117

[Close]
BLAST of Cucsat.G2892 vs. ExPASy TrEMBL
Match: A0A6J1H7P8 (U1 small nuclear ribonucleoprotein C OS=Cucurbita moschata OX=3662 GN=LOC111460839 PE=3 SV=1)

HSP 1 Score: 230 bits (586), Expect = 4.66e-74
Identity = 111/117 (94.87%), Postives = 114/117 (97.44%), Query Frame = 0 

Query: 32  MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQ 91
           MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQ
Sbjct: 1   MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQ 60

Query: 92  AAAFQQVGAAFNQHLLGQRPRLPVLPTPVMPGAAPGLMPGIRPPVLPRPIPGAPGNI 148
           AAAFQQVGAA+NQHLLGQRPRLPVLPTPVMPG APGLMPGIRPPV PRP+PGAPG +
Sbjct: 61  AAAFQQVGAAYNQHLLGQRPRLPVLPTPVMPGGAPGLMPGIRPPVFPRPLPGAPGYL 117

[Close]
BLAST of Cucsat.G2892 vs. TAIR 10
Match: AT4G03120.1 (C2H2 and C2HC zinc fingers superfamily protein )

HSP 1 Score: 167.9 bits (424), Expect = 7.2e-42
Identity = 86/111 (77.48%), Postives = 92/111 (82.88%), Query Frame = 0 

Query: 32  MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQ 91
           MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVR YYQQFEEQQTQSLIDQRIKEHLGQ
Sbjct: 1   MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRIYYQQFEEQQTQSLIDQRIKEHLGQ 60

Query: 92  AAAFQQVGAAFNQHLLGQRPRLPVLPTPVMPGAAPGLMP-GIRPPVLPRPI 142
              +QQVGA FNQH+L  RPR P++         PG MP G+RPPVLPRP+
Sbjct: 61  TGGYQQVGAVFNQHMLA-RPRPPMM-------LPPGSMPMGMRPPVLPRPM 103

The following BLAST results are available for this feature:
BLAST of Cucsat.G2892 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
F6HQ261.1e-5081.89U1 small nuclear ribonucleoprotein C OS=Vitis vinifera OX=29760 GN=VIT_07s0104g0... [more]
C5XYW44.7e-4678.86U1 small nuclear ribonucleoprotein C-2 OS=Sorghum bicolor OX=4558 GN=Sb04g028260... [more]
C5XZK66.1e-4679.37U1 small nuclear ribonucleoprotein C-1 OS=Sorghum bicolor OX=4558 GN=Sb04g009880... [more]
Q56XE41.0e-4077.48U1 small nuclear ribonucleoprotein C OS=Arabidopsis thaliana OX=3702 GN=At4g0312... [more]
A8XW447.5e-2049.12U1 small nuclear ribonucleoprotein C OS=Caenorhabditis briggsae OX=6238 GN=CBG19... [more]
BLAST of Cucsat.G2892 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_004148886.11.05e-7598.29U1 small nuclear ribonucleoprotein C [Cucumis sativus] >KGN44835.1 hypothetical ... [more]
XP_038899936.14.12e-7596.58U1 small nuclear ribonucleoprotein C isoform X1 [Benincasa hispida][more]
XP_008451425.14.26e-7597.44PREDICTED: U1 small nuclear ribonucleoprotein C [Cucumis melo] >KAA0057542.1 U1 ... [more]
XP_023004664.16.79e-7494.87U1 small nuclear ribonucleoprotein C [Cucurbita maxima][more]
XP_023515032.19.63e-7494.87U1 small nuclear ribonucleoprotein C [Cucurbita pepo subsp. pepo][more]
BLAST of Cucsat.G2892 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K5155.08e-7698.29U1 small nuclear ribonucleoprotein C OS=Cucumis sativus OX=3659 GN=Csa_7G390140 ... [more]
A0A5A7UNW22.06e-7597.44U1 small nuclear ribonucleoprotein C OS=Cucumis melo var. makuwa OX=1194695 GN=E... [more]
A0A1S3BS922.06e-7597.44U1 small nuclear ribonucleoprotein C OS=Cucumis melo OX=3656 GN=LOC103492724 PE=... [more]
A0A6J1KWY53.29e-7494.87U1 small nuclear ribonucleoprotein C OS=Cucurbita maxima OX=3661 GN=LOC111497890... [more]
A0A6J1H7P84.66e-7494.87U1 small nuclear ribonucleoprotein C OS=Cucurbita moschata OX=3662 GN=LOC1114608... [more]
BLAST of Cucsat.G2892 vs. TAIR 10
Match NameE-valueIdentityDescription
AT4G03120.17.2e-4277.48C2H2 and C2HC zinc fingers superfamily protein [more]
InterPro
Analysis Name: InterPro Annotations of Cucumber (B10) v3
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR017340U1 small nuclear ribonucleoprotein CPIRSFPIRSF037969U1-Ccoord: 2..183
e-value: 7.4E-20
score: 70.7
IPR017340U1 small nuclear ribonucleoprotein CPANTHERPTHR31148U1 SMALL NUCLEAR RIBONUCLEOPROTEIN Ccoord: 3..164
IPR013085U1-C, C2H2-type zinc fingerPFAMPF06220zf-U1coord: 3..24
e-value: 2.1E-7
score: 30.6
NoneNo IPR availableGENE3D3.30.160.60Classic Zinc Fingercoord: 1..47
e-value: 2.3E-16
score: 61.6
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 107..139
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 140..161
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 169..183
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 107..183
NoneNo IPR availablePANTHERPTHR31148:SF2U1 SMALL NUCLEAR RIBONUCLEOPROTEIN Ccoord: 3..164
IPR036236Zinc finger C2H2 superfamilySUPERFAMILY57667beta-beta-alpha zinc fingerscoord: 3..41

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cucsat.G2892.T2Cucsat.G2892.T2mRNA
Cucsat.G2892.T3Cucsat.G2892.T3mRNA
Cucsat.G2892.T1Cucsat.G2892.T1mRNA
Cucsat.G2892.T4Cucsat.G2892.T4mRNA
Cucsat.G2892.T5Cucsat.G2892.T5mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0000395 mRNA 5'-splice site recognition
biological_process GO:0000387 spliceosomal snRNP assembly
biological_process GO:0000398 mRNA splicing, via spliceosome
cellular_component GO:0000243 commitment complex
cellular_component GO:0005685 U1 snRNP
cellular_component GO:0071004 U2-type prespliceosome
cellular_component GO:0005634 nucleus
molecular_function GO:0003729 mRNA binding
molecular_function GO:0030627 pre-mRNA 5'-splice site binding
molecular_function GO:0030619 U1 snRNA binding
molecular_function GO:0008270 zinc ion binding
molecular_function GO:0003676 nucleic acid binding