Cucsat.G241.T5 (mRNA) Cucumber (B10) v3

Overview


Name	Cucsat.G241.T5
Type	mRNA
Organism	Cucumis sativus L. var. sativus cv B10 (Cucumber (B10) v3)
Description	Bile acid:sodium symporter
Location	ctg1: 5379122 .. 5382241 (-)
RNA-Seq Expression	Cucsat.G241.T5
Synteny	Cucsat.G241.T5

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAAAATGTTGTTAGAAAAATTATCAAATTCCAACCTCTTGCTTTGGACCAATATTTCTACCAATTTGTTGATAGCGATCTCTTGCTTCCTAATAATCTCCCAACACAATCTTGTCGTTTCACAAAATACAACCCGTGTTTGTATGCATCACTTCACCCAATTTCTATCATCTCCTTCAATTCTCCTTCTTTTCTTCACTAATCGGAGCCACAGAATTCTGCACAATGCCTCCGATTTCTCTGCAACTCACCCCCTTCATTTCTCCACTAATCCACCGCCCTAATCTCCGCCTTCACCGACCCCCAATTCCCCCTCTCTCGCCGCCCAGATTACTCACCGTCCGATCGGTTCAACAAAATAACGAACTCCCATCTCCCTCGCCACCGCCAAAACCCACTGGTTTGGACGATTTTCTTTCCACGGCGGCTAGTCTCTACCCTCTCTATGTGACGGCAGGCGGGATTGTTGCTTGCCTCGAACCCTCGACCTTCTCGTGGTTTGTGCAGAGAGGGCCGAGTTCCTATAGCTTATCTCTTGGTTTGATAATGTTGGCCATGGGGCTTACTCTAGAGATCAAGGATTTATTTAATTTGTTCATGCAAAGACCTCTTTCGGTGAGTTTTTGGAATCTGAATTTGTTTACATTGTGTGTATTTTGGTTATTGATTTGATTTGATGGGATGGAACCGGGGGTTTGTGGTAATGCTTGATGGTTTTGACTCTGTTGCTTTGTTTTAGATATTGTTTGGATGTGTAGCTCAGTACACGATTATGCCAGCTTCTGCAGTGCTGATCGGAAAACTTTTGGGACTTTCCCAGTCCCTTTTGTTCGGTTTGGTCTTGCTTGGATGTTGTCCTGGAGGATCTGCTTCCAATGTGGTAATAATGCCTATGATCTCTGTTTTCTTATTTGTTCTGTTTAATTTCTTATAACTTTTGTTTCTCTCCTAAAAACGGCAAAAAAAAAAAAAAAAAAGAGTAGAGAGTGAAGAGCCGCAACCTACTAGGAAATAAAATAATGTTCAAAAGATAATCCTGTATTTTAAAATTTAGAATTCAAAATCTCGATACAATACAAACATAAAAATGTTTTTTCAGAATATGTTCTTCTTGGATCACATAATTCAAGAACAGTGTTAAAAAAAATGTTGAACTTAGTAAATCTAAAAACATAAAACAAAATTCAGATGGTCAATAAAAAACTTAAAAAGAACAAAAACGGTAAGAAACTAATACCGGACATCATAGTCGCAAAGATAGAAATAGGATTGTATTGTTCTTAATTAATGAAAATTCTTCCCAGAAGATGATGCTTATAAATGTTCTAAAAGTTTATTCAAAGAAATTATACACGAATGTTGGACTAAGAATATATAGCTCAGTTTTGTTGTTGCTGTTGTTATTACAGTTGAAATTGATGATTAATCATCTTGATATTTGACTGCTAATTAATTTATTTATTGCATCTTTGTACTCGATTTGAGAGATGGATGATTCTTGACAGAGTTTTCATCCATAAGGCTGAGTAACACATTTCTGTGTTCAAAGTAGTCGTCTTAGTCAAGCATTATGGAAAACTTTATGAATGCAATCATCAACAATTGAACTACATTTCCTACTTTACAGCCTTGATCACAATAAGTTGATTGATTAAGTTTTCCGTTCACGGTTACTTCAATGAAATAGTATTTCAGGTAACCTTAATTGCTCAAGGCGACGTTCCTTTGTCTATTGTAATGACAGTATGCACAACTTTAGGAGCCGTAATTTTCACTCCCTTTCTGACAAAGTTTCTAGTAGGAGCTTATATTCCAGTCGACGCTGCACAGCTTTCTCTCAGCACCCTTCAGGTAAAGTTATGTCCACATTTGCCGTCCGGCCATAGTCATGTTCTTAAGTCATCGCCATCGTCTTCTTTTTTGGTTAGGTGGTGGTAGCTCCTATCCTCTTAGGTTCTTGCTTGCAAAAGGCATTTCCTTCCCTGGTGAAATTGGTGTTACCATTTGCACCACTTGTTGCTGTTTTAACTTCCTCGCTGCTTGCTAGCAGGTCTCGGTTCTTCAACAATTGTTTTTTTTTTTTTTTTTTGGCTTCAATAAGTTGTGCTTACCATGGAAACTTGATGAAAAGCCTTTTATTGTTTTTCGCTCTCACACACCTTTGATTATTTTTTTTTTATGATTAGTGTCTTCTCAGAGAATGTCATTCGTATCAAATCGTCAATGGTTAGTGCCACATTGGCCTCTGATGCATCTCTATGGACAGTCCTTAAAAGTATATTATCAGGAGAGCTGGGAGTAGTAATACTTTCGGTGTTTTGTTTACACTTTGCTGGTTTCTTCGTCGGGTAAGTTGCATCTCTTTCCTCACCTCAATGGACTTAGTTGCTCGAATGCAGAAGCTAAACAAATTGTTTACAATATAAATCATTTGAGATGTTACTGAAAGTAATGAACCAAAATGAATACTTAGTCACTGATGAACTGCATAAGATGGATGAAATTTTGCGTTTCCTCCCAAAACAGAATCTTCTCTATGTTGTAGATACTGATTCTTGTTTGCAAGGAGAATATGAAGTCAAATATTGTTATAAAAGATGAAATCAGTCGATTAGCTCACTACACACCCTTACGAGCTTCCTCTGATTTGCAGGTATATAGCAGCTGCTATCTGTGGGTTTCGAGAACGAGAACGAAGAACTATATCCATGCAGGTACAAAACGACATTCACTTATCGAGAAATTGAAAAACATAGATATATGAATGAGAGGGTGTGGATTTTGGCTTCAGGTTGGGATGCAGAATTCATCACTGGGAGTTGTTTTGGCAGCCTCACATTTTAGTTCAGCAATGGTGGCATTGCCTCCAGCAATTTCAGCTGTGATAATGAACATGATGGGGAGCACTCTTGGATTTTGTTGGAAATATATTCAACCTTCTGATGAAGTGAAAACCAGTGTTGTTGCCAAGTGAATTTCTTGTCCTTTTTTTCTTTGTATTTAATTTTACATCTTATTTCCAAATGTAAAAAGAATGTACTTTTAATCTTTAAATTCACTATAGAATCTCCATGCCAATTTCTTCACATCTTATTGTCGTACTTAATAGTCTTTTATGAT

Coding sequence (CDS)

ATGGTTAGTGCCACATTGGCCTCTGATGCATCTCTATGGACAGTCCTTAAAAGTATATTATCAGGAGAGCTGGGAGTAGTAATACTTTCGGTGTTTTGTTTACACTTTGCTGGTTTCTTCGTCGGGTATATAGCAGCTGCTATCTGTGGGTTTCGAGAACGAGAACGAAGAACTATATCCATGCAGGTTGGGATGCAGAATTCATCACTGGGAGTTGTTTTGGCAGCCTCACATTTTAGTTCAGCAATGGTGGCATTGCCTCCAGCAATTTCAGCTGTGATAATGAACATGATGGGGAGCACTCTTGGATTTTGTTGGAAATATATTCAACCTTCTGATGAAGTGAAAACCAGTGTTGTTGCCAAGTGA

Protein sequence

MVSATLASDASLWTVLKSILSGELGVVILSVFCLHFAGFFVGYIAAAICGFRERERRTISMQVGMQNSSLGVVLAASHFSSAMVALPPAISAVIMNMMGSTLGFCWKYIQPSDEVKTSVVAK

Homology

[Close]

BLAST of Cucsat.G241.T5 vs. ExPASy Swiss-Prot
Match: Q7XVB3 (Probable sodium/metabolite cotransporter BASS1, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=BASS1 PE=2 SV=2)

HSP 1 Score: 79.7 bits (195), Expect = 2.5e-14
Identity = 45/97 (46.39%), Postives = 64/97 (65.98%), Query Frame = 0


Query: 18  SILSGELGVVILSVFCLHFAGFFVGYIAAAICGFRERERRTISMQVGMQNSSLGVVLAAS 77
           +ILS  L VV +SV  LH +GFF GY+ +   G      RTIS++VGMQNS LGVVLA+ 
Sbjct: 309 AILSSGLQVV-MSVCWLHASGFFFGYVLSRTIGIDISSSRTISIEVGMQNSVLGVVLASK 368

Query: 78  HFSSAMVALPPAISAVIMNMMGSTLGFCWKYIQPSDE 115
           HF + + A+P A+S+V  ++ GS L   W+ + P+D+
Sbjct: 369 HFGNPLTAVPCAVSSVCHSVYGSLLAGIWRSLPPNDK 404

[Close]

BLAST of Cucsat.G241.T5 vs. ExPASy Swiss-Prot
Match: Q93YR2 (Probable sodium/metabolite cotransporter BASS1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=BASS1 PE=2 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 3.0e-12
Identity = 38/85 (44.71%), Postives = 54/85 (63.53%), Query Frame = 0


Query: 27  VILSVFCLHFAGFFVGYIAAAICGFRERERRTISMQVGMQNSSLGVVLAASHFSSAMVAL 86
           V+L+   LH +GF  GY+ + I G      RTIS++VGMQNS LGVVLA  HF + + A+
Sbjct: 312 VVLASCLLHISGFLFGYLFSRILGIDVASSRTISIEVGMQNSVLGVVLATQHFGNPLTAV 371

Query: 87  PPAISAVIMNMMGSTLGFCWKYIQP 112
           P A+S+V  +++GS L   W+   P
Sbjct: 372 PCAVSSVCHSILGSVLAGIWRRSAP 396

[Close]

BLAST of Cucsat.G241.T5 vs. ExPASy Swiss-Prot
Match: Q5VRB2 (Probable sodium/metabolite cotransporter BASS2, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=BASS2 PE=2 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 1.5e-11
Identity = 37/92 (40.22%), Postives = 57/92 (61.96%), Query Frame = 0


Query: 16  LKSILSGELGVVILSVFCLHFAGFFVGYIAAAICGFRERERRTISMQVGMQNSSLGVVLA 75
           +  +L  + G +I+ V  LH A F +GY  + +  F E   RTIS++ GMQ+S+LG +LA
Sbjct: 314 VSEVLKAQGGQLIIPVALLHVAAFALGYWLSKVSSFGESTSRTISIECGMQSSALGFLLA 373

Query: 76  ASHFSSAMVALPPAISAVIMNMMGSTLGFCWK 108
             HF++ +VA+P A+S V M + GS L   W+
Sbjct: 374 QKHFTNPLVAVPSAVSVVCMALGGSALAVFWR 405

[Close]

BLAST of Cucsat.G241.T5 vs. ExPASy Swiss-Prot
Match: Q1EBV7 (Sodium/pyruvate cotransporter BASS2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=BASS2 PE=1 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 1.4e-09
Identity = 39/97 (40.21%), Postives = 59/97 (60.82%), Query Frame = 0


Query: 19  ILSGELGVVILSVFCLHFAGFFVGYIAAAICGFRERERRTISMQVGMQNSSLGVVLAASH 78
           +L  +   +IL V  LH A F +GY  +    F E   RTIS++ GMQ+S+LG +LA  H
Sbjct: 308 VLKTQGAQLILPVALLHAAAFAIGYWISKF-SFGESTSRTISIECGMQSSALGFLLAQKH 367

Query: 79  FSSAMVALPPAISAVIMNMMGSTLGFCWKYIQ-PSDE 115
           F++ +VA+P A+S V M + GS L   W+ +  P+D+
Sbjct: 368 FTNPLVAVPSAVSVVCMALGGSGLAVFWRNLPIPADD 403

[Close]

BLAST of Cucsat.G241.T5 vs. ExPASy Swiss-Prot
Match: Q8VYY4 (Probable sodium/metabolite cotransporter BASS6, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=BASS6 PE=2 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 3.9e-07
Identity = 34/96 (35.42%), Postives = 51/96 (53.12%), Query Frame = 0


Query: 16  LKSILSGELGVVILSVFCLHFAGFFVGYIAAAICGFR-----ERERRTISMQVGMQNSSL 75
           + S++S     ++L V   H + F  GY       FR     +  +RT+S + GMQ+S L
Sbjct: 307 INSVMSPFGATILLLVTMFHLSAFLAGYFLTGSV-FRNAPDAKAMQRTLSYETGMQSSLL 366

Query: 76  GVVLAASHFSSAMVALPPAISAVIMNMMGSTLGFCW 107
            + LA   F   +V +PPAIS V+M++MG TL   W
Sbjct: 367 ALALATKFFQDPLVGIPPAISTVVMSLMGFTLVLIW 401

[Close]

BLAST of Cucsat.G241.T5 vs. NCBI nr
Match: XP_004133714.1 (probable sodium/metabolite cotransporter BASS1, chloroplastic [Cucumis sativus] >KGN56248.1 hypothetical protein Csa_010831 [Cucumis sativus])

HSP 1 Score: 232 bits (592), Expect = 7.50e-73
Identity = 122/122 (100.00%), Postives = 122/122 (100.00%), Query Frame = 0


Query: 1   MVSATLASDASLWTVLKSILSGELGVVILSVFCLHFAGFFVGYIAAAICGFRERERRTIS 60
           MVSATLASDASLWTVLKSILSGELGVVILSVFCLHFAGFFVGYIAAAICGFRERERRTIS
Sbjct: 283 MVSATLASDASLWTVLKSILSGELGVVILSVFCLHFAGFFVGYIAAAICGFRERERRTIS 342

Query: 61  MQVGMQNSSLGVVLAASHFSSAMVALPPAISAVIMNMMGSTLGFCWKYIQPSDEVKTSVV 120
           MQVGMQNSSLGVVLAASHFSSAMVALPPAISAVIMNMMGSTLGFCWKYIQPSDEVKTSVV
Sbjct: 343 MQVGMQNSSLGVVLAASHFSSAMVALPPAISAVIMNMMGSTLGFCWKYIQPSDEVKTSVV 402

Query: 121 AK 122
           AK
Sbjct: 403 AK 404

[Close]

BLAST of Cucsat.G241.T5 vs. NCBI nr
Match: XP_008452255.1 (PREDICTED: probable sodium/metabolite cotransporter BASS1, chloroplastic [Cucumis melo] >KAA0060620.1 putative sodium/metabolite cotransporter BASS1 [Cucumis melo var. makuwa] >TYK02252.1 putative sodium/metabolite cotransporter BASS1 [Cucumis melo var. makuwa])

HSP 1 Score: 224 bits (571), Expect = 1.06e-69
Identity = 117/121 (96.69%), Postives = 120/121 (99.17%), Query Frame = 0


Query: 1   MVSATLASDASLWTVLKSILSGELGVVILSVFCLHFAGFFVGYIAAAICGFRERERRTIS 60
           MVSATLASDASLWTVL+SILSGELGVVILSVFCLHFAGFFVGYIAAAICGF+ERERRTIS
Sbjct: 283 MVSATLASDASLWTVLQSILSGELGVVILSVFCLHFAGFFVGYIAAAICGFQERERRTIS 342

Query: 61  MQVGMQNSSLGVVLAASHFSSAMVALPPAISAVIMNMMGSTLGFCWKYIQPSDEVKTSVV 120
           MQVGMQNSSLGVVLA SHFSSAMVALPPAISAVIMN+MGSTLGFCWKYIQPSDEVKTSVV
Sbjct: 343 MQVGMQNSSLGVVLATSHFSSAMVALPPAISAVIMNIMGSTLGFCWKYIQPSDEVKTSVV 402

[Close]

BLAST of Cucsat.G241.T5 vs. NCBI nr
Match: XP_038903139.1 (probable sodium/metabolite cotransporter BASS1, chloroplastic [Benincasa hispida])

HSP 1 Score: 206 bits (525), Expect = 9.88e-63
Identity = 107/122 (87.70%), Postives = 115/122 (94.26%), Query Frame = 0


Query: 1   MVSATLASDASLWTVLKSILSGELGVVILSVFCLHFAGFFVGYIAAAICGFRERERRTIS 60
           MV ATLASDASLWTVL+SILSGELGVVILSVFCLHFAGFFVGYI AAI GFRERERR IS
Sbjct: 287 MVIATLASDASLWTVLQSILSGELGVVILSVFCLHFAGFFVGYITAAIGGFRERERRAIS 346

Query: 61  MQVGMQNSSLGVVLAASHFSSAMVALPPAISAVIMNMMGSTLGFCWKYIQPSDEVKTSVV 120
           ++VGMQNSSLGV+LA SHFSSAMVALPPA+SAVIMN+MGSTLGFCW+YI+PSDEVKTS  
Sbjct: 347 IEVGMQNSSLGVILATSHFSSAMVALPPAMSAVIMNIMGSTLGFCWRYIEPSDEVKTSAN 406

Query: 121 AK 122
           AK
Sbjct: 407 AK 408

[Close]

BLAST of Cucsat.G241.T5 vs. NCBI nr
Match: XP_022985149.1 (probable sodium/metabolite cotransporter BASS2, chloroplastic [Cucurbita maxima])

HSP 1 Score: 184 bits (466), Expect = 6.86e-54
Identity = 94/119 (78.99%), Postives = 111/119 (93.28%), Query Frame = 0


Query: 1   MVSATLASDASLWTVLKSILSGELGVVILSVFCLHFAGFFVGYIAAAICGFRERERRTIS 60
           MV+A+LASDAS W +++SILSGELG+V+LSVFCLHFAGFFVGY+AA+I GFRERERR IS
Sbjct: 286 MVNASLASDASPWMIIRSILSGELGMVVLSVFCLHFAGFFVGYVAASIGGFRERERRAIS 345

Query: 61  MQVGMQNSSLGVVLAASHFSSAMVALPPAISAVIMNMMGSTLGFCWKYIQPS-DEVKTS 118
           ++VGMQNSSLGVVLA+SHFSSAMVALP A+SAVIMN+MGSTLG CW+YI+PS DEV+ S
Sbjct: 346 IEVGMQNSSLGVVLASSHFSSAMVALPAAMSAVIMNIMGSTLGLCWRYIEPSADEVEAS 404

[Close]

BLAST of Cucsat.G241.T5 vs. NCBI nr
Match: XP_022136954.1 (probable sodium/metabolite cotransporter BASS1, chloroplastic isoform X2 [Momordica charantia])

HSP 1 Score: 183 bits (465), Expect = 8.21e-54
Identity = 97/121 (80.17%), Postives = 108/121 (89.26%), Query Frame = 0


Query: 1   MVSATLASDASLWTVLKSILSGELGVVILSVFCLHFAGFFVGYIAAAICGFRERERRTIS 60
           MVSATLASDAS W VLK+I+SGELGVVILSVF LHFAGFFVGYIAA I G+RERERR IS
Sbjct: 278 MVSATLASDASPWIVLKNIISGELGVVILSVFLLHFAGFFVGYIAATIGGYRERERRAIS 337

Query: 61  MQVGMQNSSLGVVLAASHFSSAMVALPPAISAVIMNMMGSTLGFCWKYIQPSDEVKTSVV 120
           ++VGMQNSSLGVVLA SHFSS MVALPPA+SAVIMN+MGS+LGF W+ IQPSD+ +TS  
Sbjct: 338 IEVGMQNSSLGVVLATSHFSSTMVALPPAMSAVIMNIMGSSLGFFWRLIQPSDKEETSAA 397

[Close]

BLAST of Cucsat.G241.T5 vs. ExPASy TrEMBL
Match: A0A0A0L3A1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G106000 PE=3 SV=1)

HSP 1 Score: 232 bits (592), Expect = 3.63e-73
Identity = 122/122 (100.00%), Postives = 122/122 (100.00%), Query Frame = 0


Query: 1   MVSATLASDASLWTVLKSILSGELGVVILSVFCLHFAGFFVGYIAAAICGFRERERRTIS 60
           MVSATLASDASLWTVLKSILSGELGVVILSVFCLHFAGFFVGYIAAAICGFRERERRTIS
Sbjct: 283 MVSATLASDASLWTVLKSILSGELGVVILSVFCLHFAGFFVGYIAAAICGFRERERRTIS 342

Query: 61  MQVGMQNSSLGVVLAASHFSSAMVALPPAISAVIMNMMGSTLGFCWKYIQPSDEVKTSVV 120
           MQVGMQNSSLGVVLAASHFSSAMVALPPAISAVIMNMMGSTLGFCWKYIQPSDEVKTSVV
Sbjct: 343 MQVGMQNSSLGVVLAASHFSSAMVALPPAISAVIMNMMGSTLGFCWKYIQPSDEVKTSVV 402

Query: 121 AK 122
           AK
Sbjct: 403 AK 404

[Close]

BLAST of Cucsat.G241.T5 vs. ExPASy TrEMBL
Match: A0A5D3BTX1 (Putative sodium/metabolite cotransporter BASS1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold18G00520 PE=3 SV=1)

HSP 1 Score: 224 bits (571), Expect = 5.13e-70
Identity = 117/121 (96.69%), Postives = 120/121 (99.17%), Query Frame = 0


Query: 1   MVSATLASDASLWTVLKSILSGELGVVILSVFCLHFAGFFVGYIAAAICGFRERERRTIS 60
           MVSATLASDASLWTVL+SILSGELGVVILSVFCLHFAGFFVGYIAAAICGF+ERERRTIS
Sbjct: 283 MVSATLASDASLWTVLQSILSGELGVVILSVFCLHFAGFFVGYIAAAICGFQERERRTIS 342

Query: 61  MQVGMQNSSLGVVLAASHFSSAMVALPPAISAVIMNMMGSTLGFCWKYIQPSDEVKTSVV 120
           MQVGMQNSSLGVVLA SHFSSAMVALPPAISAVIMN+MGSTLGFCWKYIQPSDEVKTSVV
Sbjct: 343 MQVGMQNSSLGVVLATSHFSSAMVALPPAISAVIMNIMGSTLGFCWKYIQPSDEVKTSVV 402

[Close]

BLAST of Cucsat.G241.T5 vs. ExPASy TrEMBL
Match: A0A1S3BSU0 (probable sodium/metabolite cotransporter BASS1, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103493327 PE=3 SV=1)

HSP 1 Score: 224 bits (571), Expect = 5.13e-70
Identity = 117/121 (96.69%), Postives = 120/121 (99.17%), Query Frame = 0


Query: 1   MVSATLASDASLWTVLKSILSGELGVVILSVFCLHFAGFFVGYIAAAICGFRERERRTIS 60
           MVSATLASDASLWTVL+SILSGELGVVILSVFCLHFAGFFVGYIAAAICGF+ERERRTIS
Sbjct: 283 MVSATLASDASLWTVLQSILSGELGVVILSVFCLHFAGFFVGYIAAAICGFQERERRTIS 342

Query: 61  MQVGMQNSSLGVVLAASHFSSAMVALPPAISAVIMNMMGSTLGFCWKYIQPSDEVKTSVV 120
           MQVGMQNSSLGVVLA SHFSSAMVALPPAISAVIMN+MGSTLGFCWKYIQPSDEVKTSVV
Sbjct: 343 MQVGMQNSSLGVVLATSHFSSAMVALPPAISAVIMNIMGSTLGFCWKYIQPSDEVKTSVV 402

[Close]

BLAST of Cucsat.G241.T5 vs. ExPASy TrEMBL
Match: A0A6J1JCH6 (probable sodium/metabolite cotransporter BASS2, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111483238 PE=3 SV=1)

HSP 1 Score: 184 bits (466), Expect = 3.32e-54
Identity = 94/119 (78.99%), Postives = 111/119 (93.28%), Query Frame = 0


Query: 1   MVSATLASDASLWTVLKSILSGELGVVILSVFCLHFAGFFVGYIAAAICGFRERERRTIS 60
           MV+A+LASDAS W +++SILSGELG+V+LSVFCLHFAGFFVGY+AA+I GFRERERR IS
Sbjct: 286 MVNASLASDASPWMIIRSILSGELGMVVLSVFCLHFAGFFVGYVAASIGGFRERERRAIS 345

Query: 61  MQVGMQNSSLGVVLAASHFSSAMVALPPAISAVIMNMMGSTLGFCWKYIQPS-DEVKTS 118
           ++VGMQNSSLGVVLA+SHFSSAMVALP A+SAVIMN+MGSTLG CW+YI+PS DEV+ S
Sbjct: 346 IEVGMQNSSLGVVLASSHFSSAMVALPAAMSAVIMNIMGSTLGLCWRYIEPSADEVEAS 404

[Close]

BLAST of Cucsat.G241.T5 vs. ExPASy TrEMBL
Match: A0A6J1C5S7 (probable sodium/metabolite cotransporter BASS1, chloroplastic isoform X2 OS=Momordica charantia OX=3673 GN=LOC111008522 PE=3 SV=1)

HSP 1 Score: 183 bits (465), Expect = 3.97e-54
Identity = 97/121 (80.17%), Postives = 108/121 (89.26%), Query Frame = 0


Query: 1   MVSATLASDASLWTVLKSILSGELGVVILSVFCLHFAGFFVGYIAAAICGFRERERRTIS 60
           MVSATLASDAS W VLK+I+SGELGVVILSVF LHFAGFFVGYIAA I G+RERERR IS
Sbjct: 278 MVSATLASDASPWIVLKNIISGELGVVILSVFLLHFAGFFVGYIAATIGGYRERERRAIS 337

Query: 61  MQVGMQNSSLGVVLAASHFSSAMVALPPAISAVIMNMMGSTLGFCWKYIQPSDEVKTSVV 120
           ++VGMQNSSLGVVLA SHFSS MVALPPA+SAVIMN+MGS+LGF W+ IQPSD+ +TS  
Sbjct: 338 IEVGMQNSSLGVVLATSHFSSTMVALPPAMSAVIMNIMGSSLGFFWRLIQPSDKEETSAA 397

[Close]

BLAST of Cucsat.G241.T5 vs. TAIR 10
Match: AT1G78560.1 (Sodium Bile acid symporter family )

HSP 1 Score: 72.8 bits (177), Expect = 2.2e-13
Identity = 38/85 (44.71%), Postives = 54/85 (63.53%), Query Frame = 0


Query: 27  VILSVFCLHFAGFFVGYIAAAICGFRERERRTISMQVGMQNSSLGVVLAASHFSSAMVAL 86
           V+L+   LH +GF  GY+ + I G      RTIS++VGMQNS LGVVLA  HF + + A+
Sbjct: 312 VVLASCLLHISGFLFGYLFSRILGIDVASSRTISIEVGMQNSVLGVVLATQHFGNPLTAV 371

Query: 87  PPAISAVIMNMMGSTLGFCWKYIQP 112
           P A+S+V  +++GS L   W+   P
Sbjct: 372 PCAVSSVCHSILGSVLAGIWRRSAP 396

[Close]

BLAST of Cucsat.G241.T5 vs. TAIR 10
Match: AT2G26900.1 (Sodium Bile acid symporter family )

HSP 1 Score: 63.9 bits (154), Expect = 1.0e-10
Identity = 39/97 (40.21%), Postives = 59/97 (60.82%), Query Frame = 0


Query: 19  ILSGELGVVILSVFCLHFAGFFVGYIAAAICGFRERERRTISMQVGMQNSSLGVVLAASH 78
           +L  +   +IL V  LH A F +GY  +    F E   RTIS++ GMQ+S+LG +LA  H
Sbjct: 308 VLKTQGAQLILPVALLHAAAFAIGYWISKF-SFGESTSRTISIECGMQSSALGFLLAQKH 367

Query: 79  FSSAMVALPPAISAVIMNMMGSTLGFCWKYIQ-PSDE 115
           F++ +VA+P A+S V M + GS L   W+ +  P+D+
Sbjct: 368 FTNPLVAVPSAVSVVCMALGGSGLAVFWRNLPIPADD 403

[Close]

BLAST of Cucsat.G241.T5 vs. TAIR 10
Match: AT4G22840.1 (Sodium Bile acid symporter family )

HSP 1 Score: 55.8 bits (133), Expect = 2.7e-08
Identity = 34/96 (35.42%), Postives = 51/96 (53.12%), Query Frame = 0


Query: 16  LKSILSGELGVVILSVFCLHFAGFFVGYIAAAICGFR-----ERERRTISMQVGMQNSSL 75
           + S++S     ++L V   H + F  GY       FR     +  +RT+S + GMQ+S L
Sbjct: 307 INSVMSPFGATILLLVTMFHLSAFLAGYFLTGSV-FRNAPDAKAMQRTLSYETGMQSSLL 366

Query: 76  GVVLAASHFSSAMVALPPAISAVIMNMMGSTLGFCW 107
            + LA   F   +V +PPAIS V+M++MG TL   W
Sbjct: 367 ALALATKFFQDPLVGIPPAISTVVMSLMGFTLVLIW 401

[Close]

BLAST of Cucsat.G241.T5 vs. TAIR 10
Match: AT4G12030.2 (bile acid transporter 5 )

HSP 1 Score: 54.7 bits (130), Expect = 6.1e-08
Identity = 34/96 (35.42%), Postives = 49/96 (51.04%), Query Frame = 0


Query: 16  LKSILSGELGVVILSVFCLHFAGFFVGYIAAAICGFRERE----RRTISMQVGMQNSSLG 75
           + SILS     ++  V   H   F  GY        +  +    +RTIS + GMQ+S L 
Sbjct: 308 IDSILSPFGATILFLVITFHLLAFVAGYFFTGFFFSKAPDVKALQRTISYETGMQSSLLA 367

Query: 76  VVLAASHFSSAMVALPPAISAVIMNMMGSTLGFCWK 108
           + LA   F   +V +PPAIS V+M++MG +L   WK
Sbjct: 368 LALATKFFQDPLVGVPPAISTVVMSLMGVSLVTIWK 403

[Close]

BLAST of Cucsat.G241.T5 vs. TAIR 10
Match: AT4G12030.1 (bile acid transporter 5 )

HSP 1 Score: 54.7 bits (130), Expect = 6.1e-08
Identity = 34/96 (35.42%), Postives = 49/96 (51.04%), Query Frame = 0


Query: 16  LKSILSGELGVVILSVFCLHFAGFFVGYIAAAICGFRERE----RRTISMQVGMQNSSLG 75
           + SILS     ++  V   H   F  GY        +  +    +RTIS + GMQ+S L 
Sbjct: 174 IDSILSPFGATILFLVITFHLLAFVAGYFFTGFFFSKAPDVKALQRTISYETGMQSSLLA 233

Query: 76  VVLAASHFSSAMVALPPAISAVIMNMMGSTLGFCWK 108
           + LA   F   +V +PPAIS V+M++MG +L   WK
Sbjct: 234 LALATKFFQDPLVGVPPAISTVVMSLMGVSLVTIWK 269

The following BLAST results are available for this feature:

BLAST of Cucsat.G241.T5 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q7XVB3	2.5e-14	46.39	Probable sodium/metabolite cotransporter BASS1, chloroplastic OS=Oryza sativa su...	[more]
Q93YR2	3.0e-12	44.71	Probable sodium/metabolite cotransporter BASS1, chloroplastic OS=Arabidopsis tha...	[more]
Q5VRB2	1.5e-11	40.22	Probable sodium/metabolite cotransporter BASS2, chloroplastic OS=Oryza sativa su...	[more]
Q1EBV7	1.4e-09	40.21	Sodium/pyruvate cotransporter BASS2, chloroplastic OS=Arabidopsis thaliana OX=37...	[more]
Q8VYY4	3.9e-07	35.42	Probable sodium/metabolite cotransporter BASS6, chloroplastic OS=Arabidopsis tha...	[more]

BLAST of Cucsat.G241.T5 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004133714.1	7.50e-73	100.00	probable sodium/metabolite cotransporter BASS1, chloroplastic [Cucumis sativus] ...	[more]
XP_008452255.1	1.06e-69	96.69	PREDICTED: probable sodium/metabolite cotransporter BASS1, chloroplastic [Cucumi...	[more]
XP_038903139.1	9.88e-63	87.70	probable sodium/metabolite cotransporter BASS1, chloroplastic [Benincasa hispida...	[more]
XP_022985149.1	6.86e-54	78.99	probable sodium/metabolite cotransporter BASS2, chloroplastic [Cucurbita maxima]	[more]
XP_022136954.1	8.21e-54	80.17	probable sodium/metabolite cotransporter BASS1, chloroplastic isoform X2 [Momord...	[more]

BLAST of Cucsat.G241.T5 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L3A1	3.63e-73	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G106000 PE=3 SV=1	[more]
A0A5D3BTX1	5.13e-70	96.69	Putative sodium/metabolite cotransporter BASS1 OS=Cucumis melo var. makuwa OX=11...	[more]
A0A1S3BSU0	5.13e-70	96.69	probable sodium/metabolite cotransporter BASS1, chloroplastic OS=Cucumis melo OX...	[more]
A0A6J1JCH6	3.32e-54	78.99	probable sodium/metabolite cotransporter BASS2, chloroplastic OS=Cucurbita maxim...	[more]
A0A6J1C5S7	3.97e-54	80.17	probable sodium/metabolite cotransporter BASS1, chloroplastic isoform X2 OS=Momo...	[more]

BLAST of Cucsat.G241.T5 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G78560.1	2.2e-13	44.71	Sodium Bile acid symporter family	[more]
AT2G26900.1	1.0e-10	40.21	Sodium Bile acid symporter family	[more]
AT4G22840.1	2.7e-08	35.42	Sodium Bile acid symporter family	[more]
AT4G12030.2	6.1e-08	35.42	bile acid transporter 5	[more]
AT4G12030.1	6.1e-08	35.42	bile acid transporter 5	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (B10) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR038770	Sodium/solute symporter superfamily	GENE3D	1.20.1530.20		coord: 1..108 e-value: 1.7E-24 score: 88.4
IPR004710	Bile acid:sodium symporter	PANTHER	PTHR10361	SODIUM-BILE ACID COTRANSPORTER	coord: 11..113
None	No IPR available	PANTHER	PTHR10361:SF58	SODIUM/METABOLITE COTRANSPORTER BASS2, CHLOROPLASTIC-RELATED	coord: 11..113

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cucsat.G241	Cucsat.G241	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cucsat.G241.T5.E1	Cucsat.G241.T5.E1	exon
Cucsat.G241.T5.E2	Cucsat.G241.T5.E2	exon
Cucsat.G241.T5.E3	Cucsat.G241.T5.E3	exon
Cucsat.G241.T5.E4	Cucsat.G241.T5.E4	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cucsat.G241.T5.C3	Cucsat.G241.T5.C3	CDS
Cucsat.G241.T5.C2	Cucsat.G241.T5.C2	CDS
Cucsat.G241.T5.C1	Cucsat.G241.T5.C1	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cucsat.G241.T5	Cucsat.G241.T5-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0009941	chloroplast envelope
cellular_component	GO:0016021	integral component of membrane