Cucsat.G19921.T6 (mRNA) Cucumber (B10) v3

Overview
NameCucsat.G19921.T6
TypemRNA
OrganismCucumis sativus L. var. sativus cv B10 (Cucumber (B10) v3)
DescriptionZinc finger matrin-type protein 2
Locationctg4: 3264261 .. 3267641 (+)
RNA-Seq ExpressionCucsat.G19921.T6
SyntenyCucsat.G19921.T6
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
TTTTTTGGGAGAACCAAATTCAAGCAAAAGAAAAGGGAAAAAAAGAACGAGAAAATCAGGGTCGAACCACTGCCGTCGCACTAGTGAAATTGCAGGGACCAAAAGGGAAACTGAAAACGCCGCCGGTAGCCGACCGGCGATTGGGGGCGTTGCGAGAATCGAACTCACGACCTCTCGCACCCGAAGCGAGAATCATACCACTAGACCAAACGCCCTGTGTGTCCTATCACCTTATTTCTCTACCTTAACATGTGATTTCACGCTTTCATCACCTTCTCTCATTTGCTGTTCTGTTTTCGAATCAATTCATGTTACTTTCTTATCTTTCTTATTGGATTCTTTCTGGGATTTGTTTTTTTCAGAAGAATCCCATCTGAGTTTCGGTAGTTAGGTCAAGGTTTTTTTGGGCAGCGATGGCTCATACCAGCAATACTGTAAGTTATAGTCTCGTCTTTCGTTTTAAACCCTAACTTACTGATATTCTATTCACGCAGATTCCTCTGAGAAAAATAATTAAGAATGATCATTAATCTTTGTTTTTTTTTTTTTTTTGGATTTTGGTGAGGTTTGTACTTGGAAGTAATTTGGTCGATTTCTTGTATGTAGGCAGCTGGAGTTGATAACACCTTTAGAAGGAAATTTGATCGGGAGGAGTATTTGGAACGAGCTCGTGACCGTGAAAAACAGGTTGGGGCTTTTGGAAATTCTCGTTTTCATCGTCATCTTAATGCTTATTCTTTATGAGTGTTCCTCAAATGTTTCAAATTTTGCTGATTGTGACGTCTTTTATCTGTATTTCAGGAGGTTGATAGGGTTAAGTCGAAATGTAAGTGTTTCTTTTCTTCAAGTTCTTGTTGAGCAATTGCTTGTGTTCACGTGTAGCTATAGAAACTAGATTATGTAGATTTGGGTTCAGAAGGATTTAATTTGCCAACTTTCTTCAGTGAAAGGTCCACCAGTGCAAAGAAAACCATTGAAACATAGAGATTACGAGGTAGATCTTGAGTCCCGATTGGGAAAGACCCAGGTTAGTCAGGCCATTTCTCTTTCCCCGTCTTGAATTTATGTGTATTTTAGCCATTTTAATGTTGAAACTGTATTTGCACTTCTCTTCTGTATTTCTCTGGTGAAGTTAAGGCTGTCTTGAGTTGCTAATTGTTCATTTTTTCATTAACTTTCAAAATCTTTAGCATGTTAACTTTTAGGTTGTCAGATTTTCACCTGTGGCCTCTGGATGGATGCTCCTGTAGATTCAAGCTCTCTGTGGCATTATTTTTTGACATATAAGACTTATTTATTATTTCCTGTACCGCACGTAGTGAACCAGCATGTTAGATTTCCCCTGCAAGGCATTTTTATGATGATGGGGAAATACTATTATGTATATTCACTTTATAGTTTGTCTTACAGCTAATAGTGATGGAAAATACATATAAAAGGTTATATCCATTAGGCCTGTCTTGATGAACTCATATATGAATTGGGGAATCACACTTGATTAAAGGCAATCGACTATCACCTCATTATGAACAATATTTTCTTTGTACGTCTTGCACGTGTCAATATAATTTTCTCAATCTTAGGTTTCAGTTGATGTGCTTAATGTCTTATGATTCTGACCTGTTTCATTCTTTTTTGATCTTTAATTCATCTTGTACAGGTTGTCACTCCAGTTGCACCTCTAAGCCAGCAGGTATCACATTTGACCATCTTTTCTCTTAGAATTACTGGAATTAAATCTTGAATAACAATTGAGTAATTCCAAATTTAACAGTGTGTAACTTATTGACTTGAGAAGAAAAACTGGAGGATAAATGAGAGGCTTTGCATGTATGGTTTTGGTTAATGTGCTCTTGAATTGAGTGTCCCCCATTTGGTGCTTTGCGATGAAATATAAATTGCACTTGATCTCATATTGCTTATTTTCTTCTTTATATCAATGAATTATTTTTCAGGCTGGATATTACTGTTCTGTTTGTGAATGTGTCGTCAAGGATTCTGCAAATTACTTGGATCACATCAATGGAAAGAAACGTATGTTATCCCTTTTTCTAGATCTTTAGCCAATTAAGTGGGTGAATATTCAGGTTTTGTATTTTCTTTACCTTCTTTTCTATTGACTCTGTGTTGTAGATCAGAGGGCCTTGGGTATGTCCATGCGGGTAGAGCGGGCATCTCTCGAACAGGTACCACCCTAAATAGTCAGAAAAATGAAACTATTTCTCATCTCTATTATTGTAAATGCTCGTGAAATCTCAGTGTTCAAGAGACTGAATAGCTTTATATGAAATAGGTGCAAGAGCGGTTTGAAGTTCTTAAAAAGAGAAAAACACCAGGAAGCTTCACAGAGCAAGGTAAAGCTTAAGAATTCAGAGTTAGTTTTAATGAGGGGAAAAAGATAGGATTTCCCTCCCAATACTAGTTTCATTGATGAATGGCACTAGGACACCATGCTTTTAACTGCAAAAATATACTAGCGTTGGCTATTATCACTATTCTGTGTTTCATGTTTTAGAATTATGTTTCTCTTTTTTAATGATGCTATCTTCCGTTTTTCCTTAGATCTTGAAGAGCGTATACTAAAGCAGCAACAAGAAGAAGAACAACGAAAGCGCGAGCGTCGAGAAAGGAAGAAAGAAAAGAAGGTTAGTACTATAATAACCTCACGATTTTGGCAACAATTTCTATCATGAAAAGTGGGGATCACATCTTACACTTGTGTTTATTCTCCTGGAATGTAGAAAGAGAAGGCTGCAGAAGAGGAACCTGAAGTAGATCCCGATGTTGCAGCAATGATGGGATTTGGAGGCTTCCGTTCATCCAAGAAGTGACAATTATACAGGTTCATCTTTTACGACCTTAATTAAACAAGATATGTTCCGTAGGTTGTACAACTGTGTGCTTGAGTTCTAAAAAGATTACAGGTTCATCTTCTTCAACTCGAAGCTTGAGCTTTGCTCTTGTGATCCATGTGGAGTTGCTATAATTTGAACTGATGTGCATGGGAAGACGAACTTGGGCTTCCCAGCTTCTTGGACTTGTAAGCTGTATCTTTTAAAGATAATCTGGCCTTTTTCTGTAACATTAAATTAATATGTTATTAGTATACAATGTTTCTTGATGTCTGGAGATGAAGTTTGTTGCTGAGGCAGATTTTAGATGAACCTAATCCAAAAAATGAGAAAGAATATATTAGGTTTTTCAAATATTGGCTGTGAACACCCCTGTGAGGTGCAAAAAGTGAGTGATGTTAAATAATGAGATTTGGGGTATTAAAAGTTAGCCTAACTCAATGGTACATGTCCCCTTCAAATTCATTTGATTTAATCATGGAATACTCAATTTTACCAAGGAAAAGGTTTTGACATGGATATTTAATAT

Coding sequence (CDS)

TTTTTGGGAGAACCAAATTCAAGCAAAAGAAAAGGGAAAAAAAGAACGAGAAAATCAGGGTCGAACCACTGCCGTCGCACTAGTGAAATTGCAGGGACCAAAAGGGAAACTGAAAACGCCGCCGGTAGCCGACCGGCGATTGGGGGCGTTGCGAGAATCGAACTCACGACCTCTCGCACCCGAAGCGAGAATCATACCACTAGACCAAACGCCCTGTGTGTCCTATCACCTTATTTCTCTACCTTAACATGTGATTTCACGCTTTCATCACCTTCTCTCATTTGCTGTTCTGTTTTCGAATCAATTCATGTTACTTTCTTATCTTTCTTATTGGATTCTTTCTGGGATTTGTTTTTTTCAGAAGAATCCCATCTGAGTTTCGGTAGTTAG

Protein sequence

FLGEPNSSKRKGKKRTRKSGSNHCRRTSEIAGTKRETENAAGSRPAIGGVARIELTTSRTRSENHTTRPNALCVLSPYFSTLTCDFTLSSPSLICCSVFESIHVTFLSFLLDSFWDLFFSEESHLSFGS
Homology
The following BLAST results are available for this feature:
BLAST of Cucsat.G19921.T6 vs.
Match NameE-valueIdentityDescription
BLAST of Cucsat.G19921.T6 vs.
Match NameE-valueIdentityDescription
BLAST of Cucsat.G19921.T6 vs.
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucumber (B10) v3
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..43

Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Cucsat.G19921Cucsat.G19921gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Cucsat.G19921.T6.E1Cucsat.G19921.T6.E1exon
Cucsat.G19921.T6.E2Cucsat.G19921.T6.E2exon
Cucsat.G19921.T6.E3Cucsat.G19921.T6.E3exon
Cucsat.G19921.T6.E4Cucsat.G19921.T6.E4exon
Cucsat.G19921.T6.E5Cucsat.G19921.T6.E5exon
Cucsat.G19921.T6.E6Cucsat.G19921.T6.E6exon
Cucsat.G19921.T6.E7Cucsat.G19921.T6.E7exon
Cucsat.G19921.T6.E8Cucsat.G19921.T6.E8exon
Cucsat.G19921.T6.E9Cucsat.G19921.T6.E9exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Cucsat.G19921.T6.C1Cucsat.G19921.T6.C1CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Cucsat.G19921.T6Cucsat.G19921.T6-proteinpolypeptide


GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0000398 mRNA splicing, via spliceosome
cellular_component GO:0005681 spliceosomal complex
cellular_component GO:0046540 U4/U6 x U5 tri-snRNP complex
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0008270 zinc ion binding