Cucsat.G19921.T20 (mRNA) Cucumber (B10) v3

Overview
NameCucsat.G19921.T20
TypemRNA
OrganismCucumis sativus L. var. sativus cv B10 (Cucumber (B10) v3)
DescriptionZinc finger matrin-type protein 2
Locationctg4: 3264258 .. 3267661 (+)
RNA-Seq ExpressionCucsat.G19921.T20
SyntenyCucsat.G19921.T20
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
CCCTTTTTTGGGAGAACCAAATTCAAGCAAAAGAAAAGGGAAAAAAAGAACGAGAAAATCAGGGTCGAACCACTGCCGTCGCACTAGTGAAATTGCAGGGACCAAAAGGGAAACTGAAAACGCCGCCGGTAGCCGACCGGCGATTGGGGGCGTTGCGAGAATCGAACTCACGACCTCTCGCACCCGAAGCGAGAATCATACCACTAGACCAAACGCCCTGTGTGTCCTATCACCTTATTTCTCTACCTTAACATGTGATTTCACGCTTTCATCACCTTCTCTCATTTGCTGTTCTGTTTTCGAATCAATTCATGTTACTTTCTTATCTTTCTTATTGGATTCTTTCTGGGATTTGTTTTTTTCAGAAGAATCCCATCTGAGTTTCGGTAGTTAGGTCAAGGTTTTTTTGGGCAGCGATGGCTCATACCAGCAATACTGTAAGTTATAGTCTCGTCTTTCGTTTTAAACCCTAACTTACTGATATTCTATTCACGCAGATTCCTCTGAGAAAAATAATTAAGAATGATCATTAATCTTTGTTTTTTTTTTTTTTTTGGATTTTGGTGAGGTTTGTACTTGGAAGTAATTTGGTCGATTTCTTGTATGTAGGCAGCTGGAGTTGATAACACCTTTAGAAGGAAATTTGATCGGGAGGAGTATTTGGAACGAGCTCGTGACCGTGAAAAACAGGTTGGGGCTTTTGGAAATTCTCGTTTTCATCGTCATCTTAATGCTTATTCTTTATGAGTGTTCCTCAAATGTTTCAAATTTTGCTGATTGTGACGTCTTTTATCTGTATTTCAGGAGGTTGATAGGGTTAAGTCGAAATGTAAGTGTTTCTTTTCTTCAAGTTCTTGTTGAGCAATTGCTTGTGTTCACGTGTAGCTATAGAAACTAGATTATGTAGATTTGGGTTCAGAAGGATTTAATTTGCCAACTTTCTTCAGTGAAAGGTCCACCAGTGCAAAGAAAACCATTGAAACATAGAGATTACGAGGTAGATCTTGAGTCCCGATTGGGAAAGACCCAGGTTAGTCAGGCCATTTCTCTTTCCCCGTCTTGAATTTATGTGTATTTTAGCCATTTTAATGTTGAAACTGTATTTGCACTTCTCTTCTGTATTTCTCTGGTGAAGTTAAGGCTGTCTTGAGTTGCTAATTGTTCATTTTTTCATTAACTTTCAAAATCTTTAGCATGTTAACTTTTAGGTTGTCAGATTTTCACCTGTGGCCTCTGGATGGATGCTCCTGTAGATTCAAGCTCTCTGTGGCATTATTTTTTGACATATAAGACTTATTTATTATTTCCTGTACCGCACGTAGTGAACCAGCATGTTAGATTTCCCCTGCAAGGCATTTTTATGATGATGGGGAAATACTATTATGTATATTCACTTTATAGTTTGTCTTACAGCTAATAGTGATGGAAAATACATATAAAAGGTTATATCCATTAGGCCTGTCTTGATGAACTCATATATGAATTGGGGAATCACACTTGATTAAAGGCAATCGACTATCACCTCATTATGAACAATATTTTCTTTGTACGTCTTGCACGTGTCAATATAATTTTCTCAATCTTAGGTTTCAGTTGATGTGCTTAATGTCTTATGATTCTGACCTGTTTCATTCTTTTTTGATCTTTAATTCATCTTGTACAGGTTGTCACTCCAGTTGCACCTCTAAGCCAGCAGGTATCACATTTGACCATCTTTTCTCTTAGAATTACTGGAATTAAATCTTGAATAACAATTGAGTAATTCCAAATTTAACAGTGTGTAACTTATTGACTTGAGAAGAAAAACTGGAGGATAAATGAGAGGCTTTGCATGTATGGTTTTGGTTAATGTGCTCTTGAATTGAGTGTCCCCCATTTGGTGCTTTGCGATGAAATATAAATTGCACTTGATCTCATATTGCTTATTTTCTTCTTTATATCAATGAATTATTTTTCAGGCTGGATATTACTGTTCTGTTTGTGAATGTGTCGTCAAGGATTCTGCAAATTACTTGGATCACATCAATGGAAAGAAACGTATGTTATCCCTTTTTCTAGATCTTTAGCCAATTAAGTGGGTGAATATTCAGGTTTTGTATTTTCTTTACCTTCTTTTCTATTGACTCTGTGTTGTAGATCAGAGGGCCTTGGGTATGTCCATGCGGGTAGAGCGGGCATCTCTCGAACAGGTACCACCCTAAATAGTCAGAAAAATGAAACTATTTCTCATCTCTATTATTGTAAATGCTCGTGAAATCTCAGTGTTCAAGAGACTGAATAGCTTTATATGAAATAGGTGCAAGAGCGGTTTGAAGTTCTTAAAAAGAGAAAAACACCAGGAAGCTTCACAGAGCAAGGTAAAGCTTAAGAATTCAGAGTTAGTTTTAATGAGGGGAAAAAGATAGGATTTCCCTCCCAATACTAGTTTCATTGATGAATGGCACTAGGACACCATGCTTTTAACTGCAAAAATATACTAGCGTTGGCTATTATCACTATTCTGTGTTTCATGTTTTAGAATTATGTTTCTCTTTTTTAATGATGCTATCTTCCGTTTTTCCTTAGATCTTGAAGAGCGTATACTAAAGCAGCAACAAGAAGAAGAACAACGAAAGCGCGAGCGTCGAGAAAGGAAGAAAGAAAAGAAGGTTAGTACTATAATAACCTCACGATTTTGGCAACAATTTCTATCATGAAAAGTGGGGATCACATCTTACACTTGTGTTTATTCTCCTGGAATGTAGAAAGAGAAGGCTGCAGAAGAGGAACCTGAAGTAGATCCCGATGTTGCAGCAATGATGGGATTTGGAGGCTTCCGTTCATCCAAGAAGTGACAATTATACAGGTTCATCTTTTACGACCTTAATTAAACAAGATATGTTCCGTAGGTTGTACAACTGTGTGCTTGAGTTCTAAAAAGATTACAGGTTCATCTTCTTCAACTCGAAGCTTGAGCTTTGCTCTTGTGATCCATGTGGAGTTGCTATAATTTGAACTGATGTGCATGGGAAGACGAACTTGGGCTTCCCAGCTTCTTGGACTTGTAAGCTGTATCTTTTAAAGATAATCTGGCCTTTTTCTGTAACATTAAATTAATATGTTATTAGTATACAATGTTTCTTGATGTCTGGAGATGAAGTTTGTTGCTGAGGCAGATTTTAGATGAACCTAATCCAAAAAATGAGAAAGAATATATTAGGTTTTTCAAATATTGGCTGTGAACACCCCTGTGAGGTGCAAAAAGTGAGTGATGTTAAATAATGAGATTTGGGGTATTAAAAGTTAGCCTAACTCAATGGTACATGTCCCCTTCAAATTCATTTGATTTAATCATGGAATACTCAATTTTACCAAGGAAAAGGTTTTGACATGGATATTTAATATTATGGATATCTCAAACTTTA

Coding sequence (CDS)

ATGGCTCATACCAGCAATACTGCAGCTGGAGTTGATAACACCTTTAGAAGGAAATTTGATCGGGAGGAGTATTTGGAACGAGCTCGTGACCGTGAAAAACAGGAGGTTGATAGGGTTAAGTCGAAATTGAAAGGTCCACCAGTGCAAAGAAAACCATTGAAACATAGAGATTACGAGGTAGATCTTGAGTCCCGATTGGGAAAGACCCAGGTTGTCACTCCAGTTGCACCTCTAAGCCAGCAGGCTGGATATTACTGTTCTGTTTGTGAATGTGTCGTCAAGGATTCTGCAAATTACTTGGATCACATCAATGGAAAGAAACATCAGAGGGCCTTGGGTATGTCCATGCGGGTAGAGCGGGCATCTCTCGAACAGGTGCAAGAGCGGTTTGAAGTTCTTAAAAAGAGAAAAACACCAGGAAGCTTCACAGAGCAAGATCTTGAAGAGCGTATACTAAAGCAGCAACAAGAAGAAGAACAACGAAAGCGCGAGCGTCGAGAAAGGAAGAAAGAAAAGAAGGTTAGTACTATAATAACCTCACGATTTTGGCAACAATTTCTATCATGA

Protein sequence

MAHTSNTAAGVDNTFRRKFDREEYLERARDREKQEVDRVKSKLKGPPVQRKPLKHRDYEVDLESRLGKTQVVTPVAPLSQQAGYYCSVCECVVKDSANYLDHINGKKHQRALGMSMRVERASLEQVQERFEVLKKRKTPGSFTEQDLEERILKQQQEEEQRKRERRERKKEKKVSTIITSRFWQQFLS
Homology
[Close]
BLAST of Cucsat.G19921.T20 vs. ExPASy Swiss-Prot
Match: Q96NC0 (Zinc finger matrin-type protein 2 OS=Homo sapiens OX=9606 GN=ZMAT2 PE=1 SV=1)

HSP 1 Score: 153.3 bits (386), Expect = 2.7e-36
Identity = 87/159 (54.72%), Postives = 120/159 (75.47%), Query Frame = 0 

Query: 15  FRRKFDREEYLERARDREKQEVDRVKSKLKGPPVQRKPLKHRDYEVDLESRLGKTQVVTP 74
           FRRK+D++EY + A  R  +E ++   K    PV+R+ L+HRDY+VDLES+LGKT V+T 
Sbjct: 12  FRRKWDKDEYEKLAEKRLTEEREKKDGK-PVQPVKRELLRHRDYKVDLESKLGKTIVITK 71

Query: 75  VAPLSQQAGYYCSVCECVVKDSANYLDHINGKKHQRALGMSMRVERASLEQVQERFEVLK 134
             P S+  GYYC+VC+CVVKDS N+LDHINGKKHQR LGMSMRVER++L+QV++RFEV  
Sbjct: 72  TTPQSEMGGYYCNVCDCVVKDSINFLDHINGKKHQRNLGMSMRVERSTLDQVKKRFEV-N 131

Query: 135 KRKTPGSFTEQDLEERILKQQQEEEQRKRERRERKKEKK 174
           K+K      + D EER+ + ++EEE+ K  ++E++KEKK
Sbjct: 132 KKKMEEKQKDYDFEERMKELREEEEKAKAYKKEKQKEKK 168

[Close]
BLAST of Cucsat.G19921.T20 vs. ExPASy Swiss-Prot
Match: Q9CPW7 (Zinc finger matrin-type protein 2 OS=Mus musculus OX=10090 GN=Zmat2 PE=2 SV=1)

HSP 1 Score: 153.3 bits (386), Expect = 2.7e-36
Identity = 87/159 (54.72%), Postives = 120/159 (75.47%), Query Frame = 0 

Query: 15  FRRKFDREEYLERARDREKQEVDRVKSKLKGPPVQRKPLKHRDYEVDLESRLGKTQVVTP 74
           FRRK+D++EY + A  R  +E ++   K    PV+R+ L+HRDY+VDLES+LGKT V+T 
Sbjct: 12  FRRKWDKDEYEKLAEKRLTEEREKKDGK-PVQPVKRELLRHRDYKVDLESKLGKTIVITK 71

Query: 75  VAPLSQQAGYYCSVCECVVKDSANYLDHINGKKHQRALGMSMRVERASLEQVQERFEVLK 134
             P S+  GYYC+VC+CVVKDS N+LDHINGKKHQR LGMSMRVER++L+QV++RFEV  
Sbjct: 72  TTPQSEMGGYYCNVCDCVVKDSINFLDHINGKKHQRNLGMSMRVERSTLDQVKKRFEV-N 131

Query: 135 KRKTPGSFTEQDLEERILKQQQEEEQRKRERRERKKEKK 174
           K+K      + D EER+ + ++EEE+ K  ++E++KEKK
Sbjct: 132 KKKMEEKQKDYDFEERMKELREEEEKAKAYKKEKQKEKK 168

[Close]
BLAST of Cucsat.G19921.T20 vs. ExPASy Swiss-Prot
Match: P34670 (Putative zinc finger matrin-type protein snu-23 OS=Caenorhabditis elegans OX=6239 GN=snu-23 PE=3 SV=2)

HSP 1 Score: 114.0 bits (284), Expect = 1.8e-24
Identity = 69/172 (40.12%), Postives = 113/172 (65.70%), Query Frame = 0 

Query: 4   TSNTAAGVDNTFRRKFDREEYLERARDR-----EKQEVDRVKSKLKGPPVQRKPLKHRDY 63
           + + A+G ++  RR +D +EY   A+ R     E +++   K K   P V+R+ L+ R+Y
Sbjct: 7   SGSQASGTNH--RRTWDEKEYSLAAQQRLLDEKEAEDIRLGKKKKDEPKVKREMLQAREY 66

Query: 64  EVDLESRLGKTQVVTPVAPLSQQAGYYCSVCECVVKDSANYLDHINGKKHQRALGMSMRV 123
           +VDL+S++GK+ V+T   P ++  G+YC VC+CVVKDS N+LDHINGK HQR +GMSM+ 
Sbjct: 67  KVDLDSKVGKSVVITKATPSAETGGFYCDVCDCVVKDSINFLDHINGKNHQRNIGMSMKT 126

Query: 124 ERASLEQVQERFEVLKKRKTPGSFTEQDLEERILKQQQEEEQRKRERRERKK 171
           +++++  V+ERF+++K +K       Q   E++L+  QEEE R  + ++ KK
Sbjct: 127 KKSTVADVRERFKLMKDKKEREKKEAQ--VEQLLEDVQEEEARMADFKKDKK 174

[Close]
BLAST of Cucsat.G19921.T20 vs. ExPASy Swiss-Prot
Match: Q09776 (U4/U6.U5 small nuclear ribonucleoprotein component snu23 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=snu23 PE=3 SV=4)

HSP 1 Score: 56.2 bits (134), Expect = 4.6e-07
Identity = 39/123 (31.71%), Postives = 68/123 (55.28%), Query Frame = 0 

Query: 56  RDYEVDLESRLGKTQVVTPVAPLSQQ---AGYYCSVCECVVKDSANYLDHINGKKHQRAL 115
           R   +D E  + KT ++   A + ++   AG+YC  C    KDS ++LDH+N  +H R  
Sbjct: 24  RTQRIDFEKDVNKTTILPAGASVGRRGRGAGWYCEACNETYKDSLSWLDHLNSTQHLRKT 83

Query: 116 GMSMRVERASLEQVQERFEVLKKR--KTPGSFTEQDLEERILKQQQEEEQRKRERRERKK 174
              +  +RA+LE+V+ER E  +++  +      E  L+ER+ +  QE E +K  R+++K 
Sbjct: 84  RTVIIEKRATLEEVKERMEYWRRQLLEPEKGSEEYSLKERVERYHQELEAKKLRRKQKKV 143

[Close]
BLAST of Cucsat.G19921.T20 vs. NCBI nr
Match: XP_011648855.1 (zinc finger matrin-type protein 2 [Cucumis sativus] >XP_011648858.1 zinc finger matrin-type protein 2 [Cucumis sativus] >XP_031737170.1 zinc finger matrin-type protein 2 [Cucumis sativus] >KGN60986.1 hypothetical protein Csa_021129 [Cucumis sativus])

HSP 1 Score: 326 bits (835), Expect = 2.25e-111
Identity = 173/173 (100.00%), Postives = 173/173 (100.00%), Query Frame = 0 

Query: 1   MAHTSNTAAGVDNTFRRKFDREEYLERARDREKQEVDRVKSKLKGPPVQRKPLKHRDYEV 60
           MAHTSNTAAGVDNTFRRKFDREEYLERARDREKQEVDRVKSKLKGPPVQRKPLKHRDYEV
Sbjct: 1   MAHTSNTAAGVDNTFRRKFDREEYLERARDREKQEVDRVKSKLKGPPVQRKPLKHRDYEV 60

Query: 61  DLESRLGKTQVVTPVAPLSQQAGYYCSVCECVVKDSANYLDHINGKKHQRALGMSMRVER 120
           DLESRLGKTQVVTPVAPLSQQAGYYCSVCECVVKDSANYLDHINGKKHQRALGMSMRVER
Sbjct: 61  DLESRLGKTQVVTPVAPLSQQAGYYCSVCECVVKDSANYLDHINGKKHQRALGMSMRVER 120

Query: 121 ASLEQVQERFEVLKKRKTPGSFTEQDLEERILKQQQEEEQRKRERRERKKEKK 173
           ASLEQVQERFEVLKKRKTPGSFTEQDLEERILKQQQEEEQRKRERRERKKEKK
Sbjct: 121 ASLEQVQERFEVLKKRKTPGSFTEQDLEERILKQQQEEEQRKRERRERKKEKK 173

[Close]
BLAST of Cucsat.G19921.T20 vs. NCBI nr
Match: XP_008453709.1 (PREDICTED: zinc finger matrin-type protein 2 [Cucumis melo] >XP_008453717.1 PREDICTED: zinc finger matrin-type protein 2 [Cucumis melo] >XP_008453724.1 PREDICTED: zinc finger matrin-type protein 2 [Cucumis melo] >XP_038889474.1 zinc finger matrin-type protein 2 [Benincasa hispida] >XP_038889475.1 zinc finger matrin-type protein 2 [Benincasa hispida] >XP_038889476.1 zinc finger matrin-type protein 2 [Benincasa hispida])

HSP 1 Score: 323 bits (827), Expect = 3.73e-110
Identity = 171/173 (98.84%), Postives = 173/173 (100.00%), Query Frame = 0 

Query: 1   MAHTSNTAAGVDNTFRRKFDREEYLERARDREKQEVDRVKSKLKGPPVQRKPLKHRDYEV 60
           MAHTSNTAAGVDNTFRRKFDREEYLERAR+REKQEV+RVKSKLKGPPVQRKPLKHRDYEV
Sbjct: 1   MAHTSNTAAGVDNTFRRKFDREEYLERAREREKQEVERVKSKLKGPPVQRKPLKHRDYEV 60

Query: 61  DLESRLGKTQVVTPVAPLSQQAGYYCSVCECVVKDSANYLDHINGKKHQRALGMSMRVER 120
           DLESRLGKTQVVTPVAPLSQQAGYYCSVCECVVKDSANYLDHINGKKHQRALGMSMRVER
Sbjct: 61  DLESRLGKTQVVTPVAPLSQQAGYYCSVCECVVKDSANYLDHINGKKHQRALGMSMRVER 120

Query: 121 ASLEQVQERFEVLKKRKTPGSFTEQDLEERILKQQQEEEQRKRERRERKKEKK 173
           ASLEQVQERFEVLKKRKTPGSFTEQDLEERILKQQQEEEQRKRERRERKKEKK
Sbjct: 121 ASLEQVQERFEVLKKRKTPGSFTEQDLEERILKQQQEEEQRKRERRERKKEKK 173

[Close]
BLAST of Cucsat.G19921.T20 vs. NCBI nr
Match: XP_022938279.1 (zinc finger matrin-type protein 2 [Cucurbita moschata])

HSP 1 Score: 319 bits (817), Expect = 1.24e-108
Identity = 168/173 (97.11%), Postives = 171/173 (98.84%), Query Frame = 0 

Query: 1   MAHTSNTAAGVDNTFRRKFDREEYLERARDREKQEVDRVKSKLKGPPVQRKPLKHRDYEV 60
           MAHTSNTAAGVDNTFRRKFDREEYLERARDREKQE +RVKSKLKGPPVQRKPLKHRDYEV
Sbjct: 1   MAHTSNTAAGVDNTFRRKFDREEYLERARDREKQEAERVKSKLKGPPVQRKPLKHRDYEV 60

Query: 61  DLESRLGKTQVVTPVAPLSQQAGYYCSVCECVVKDSANYLDHINGKKHQRALGMSMRVER 120
           DL SRLGKTQVVTPVAPLSQQAGYYCSVCECVVKDSANYLDHINGKKHQRALGMSMRVER
Sbjct: 61  DLNSRLGKTQVVTPVAPLSQQAGYYCSVCECVVKDSANYLDHINGKKHQRALGMSMRVER 120

Query: 121 ASLEQVQERFEVLKKRKTPGSFTEQDLEERILKQQQEEEQRKRERRERKKEKK 173
           ASLEQVQERFEVLKKRKTPGSFTEQDLEERI+KQQ+EEEQRKRERRERKKEKK
Sbjct: 121 ASLEQVQERFEVLKKRKTPGSFTEQDLEERIIKQQEEEEQRKRERRERKKEKK 173

[Close]
BLAST of Cucsat.G19921.T20 vs. NCBI nr
Match: XP_023536719.1 (zinc finger matrin-type protein 2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 319 bits (817), Expect = 1.24e-108
Identity = 168/173 (97.11%), Postives = 171/173 (98.84%), Query Frame = 0 

Query: 1   MAHTSNTAAGVDNTFRRKFDREEYLERARDREKQEVDRVKSKLKGPPVQRKPLKHRDYEV 60
           MAHTSNTAAGVDNTFRRKFDREEYLERARDREKQE +RVKSKLKGPPVQRKPLKHRDYEV
Sbjct: 1   MAHTSNTAAGVDNTFRRKFDREEYLERARDREKQEAERVKSKLKGPPVQRKPLKHRDYEV 60

Query: 61  DLESRLGKTQVVTPVAPLSQQAGYYCSVCECVVKDSANYLDHINGKKHQRALGMSMRVER 120
           DL SRLGKTQVVTPVAPLSQQAGYYCSVCECVVKDSANYLDHINGKKHQRALGMSMRVER
Sbjct: 61  DLNSRLGKTQVVTPVAPLSQQAGYYCSVCECVVKDSANYLDHINGKKHQRALGMSMRVER 120

Query: 121 ASLEQVQERFEVLKKRKTPGSFTEQDLEERILKQQQEEEQRKRERRERKKEKK 173
           ASLEQVQERFEVLKKRKTPGSFTEQDLEERI+KQQ+EEEQRKRERRERKKEKK
Sbjct: 121 ASLEQVQERFEVLKKRKTPGSFTEQDLEERIIKQQEEEEQRKRERRERKKEKK 173

[Close]
BLAST of Cucsat.G19921.T20 vs. NCBI nr
Match: XP_022965943.1 (zinc finger matrin-type protein 2 [Cucurbita maxima])

HSP 1 Score: 318 bits (814), Expect = 3.56e-108
Identity = 167/173 (96.53%), Postives = 171/173 (98.84%), Query Frame = 0 

Query: 1   MAHTSNTAAGVDNTFRRKFDREEYLERARDREKQEVDRVKSKLKGPPVQRKPLKHRDYEV 60
           MAHTSNTAAGVDNTFRRKFDREEYLERARDREKQE +RVKSKLKGPPVQRKPLKHRDYEV
Sbjct: 1   MAHTSNTAAGVDNTFRRKFDREEYLERARDREKQEAERVKSKLKGPPVQRKPLKHRDYEV 60

Query: 61  DLESRLGKTQVVTPVAPLSQQAGYYCSVCECVVKDSANYLDHINGKKHQRALGMSMRVER 120
           DL SRLGKTQVVTPVAPLSQQAGYYCSVCECVVKDSANYLDHINGKKHQRALGMSMRVER
Sbjct: 61  DLNSRLGKTQVVTPVAPLSQQAGYYCSVCECVVKDSANYLDHINGKKHQRALGMSMRVER 120

Query: 121 ASLEQVQERFEVLKKRKTPGSFTEQDLEERILKQQQEEEQRKRERRERKKEKK 173
           ASLEQVQERFEVLKKRKTPGSFTEQDLEERI+KQQ+EEEQRKRERRERKKE+K
Sbjct: 121 ASLEQVQERFEVLKKRKTPGSFTEQDLEERIIKQQEEEEQRKRERRERKKERK 173

[Close]
BLAST of Cucsat.G19921.T20 vs. ExPASy TrEMBL
Match: A0A0A0LM02 (U1-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G033890 PE=4 SV=1)

HSP 1 Score: 326 bits (835), Expect = 1.09e-111
Identity = 173/173 (100.00%), Postives = 173/173 (100.00%), Query Frame = 0 

Query: 1   MAHTSNTAAGVDNTFRRKFDREEYLERARDREKQEVDRVKSKLKGPPVQRKPLKHRDYEV 60
           MAHTSNTAAGVDNTFRRKFDREEYLERARDREKQEVDRVKSKLKGPPVQRKPLKHRDYEV
Sbjct: 1   MAHTSNTAAGVDNTFRRKFDREEYLERARDREKQEVDRVKSKLKGPPVQRKPLKHRDYEV 60

Query: 61  DLESRLGKTQVVTPVAPLSQQAGYYCSVCECVVKDSANYLDHINGKKHQRALGMSMRVER 120
           DLESRLGKTQVVTPVAPLSQQAGYYCSVCECVVKDSANYLDHINGKKHQRALGMSMRVER
Sbjct: 61  DLESRLGKTQVVTPVAPLSQQAGYYCSVCECVVKDSANYLDHINGKKHQRALGMSMRVER 120

Query: 121 ASLEQVQERFEVLKKRKTPGSFTEQDLEERILKQQQEEEQRKRERRERKKEKK 173
           ASLEQVQERFEVLKKRKTPGSFTEQDLEERILKQQQEEEQRKRERRERKKEKK
Sbjct: 121 ASLEQVQERFEVLKKRKTPGSFTEQDLEERILKQQQEEEQRKRERRERKKEKK 173

[Close]
BLAST of Cucsat.G19921.T20 vs. ExPASy TrEMBL
Match: A0A1S3BWZ9 (zinc finger matrin-type protein 2 OS=Cucumis melo OX=3656 GN=LOC103494358 PE=4 SV=1)

HSP 1 Score: 323 bits (827), Expect = 1.80e-110
Identity = 171/173 (98.84%), Postives = 173/173 (100.00%), Query Frame = 0 

Query: 1   MAHTSNTAAGVDNTFRRKFDREEYLERARDREKQEVDRVKSKLKGPPVQRKPLKHRDYEV 60
           MAHTSNTAAGVDNTFRRKFDREEYLERAR+REKQEV+RVKSKLKGPPVQRKPLKHRDYEV
Sbjct: 1   MAHTSNTAAGVDNTFRRKFDREEYLERAREREKQEVERVKSKLKGPPVQRKPLKHRDYEV 60

Query: 61  DLESRLGKTQVVTPVAPLSQQAGYYCSVCECVVKDSANYLDHINGKKHQRALGMSMRVER 120
           DLESRLGKTQVVTPVAPLSQQAGYYCSVCECVVKDSANYLDHINGKKHQRALGMSMRVER
Sbjct: 61  DLESRLGKTQVVTPVAPLSQQAGYYCSVCECVVKDSANYLDHINGKKHQRALGMSMRVER 120

Query: 121 ASLEQVQERFEVLKKRKTPGSFTEQDLEERILKQQQEEEQRKRERRERKKEKK 173
           ASLEQVQERFEVLKKRKTPGSFTEQDLEERILKQQQEEEQRKRERRERKKEKK
Sbjct: 121 ASLEQVQERFEVLKKRKTPGSFTEQDLEERILKQQQEEEQRKRERRERKKEKK 173

[Close]
BLAST of Cucsat.G19921.T20 vs. ExPASy TrEMBL
Match: A0A6J1FDL7 (zinc finger matrin-type protein 2 OS=Cucurbita moschata OX=3662 GN=LOC111444413 PE=4 SV=1)

HSP 1 Score: 319 bits (817), Expect = 6.02e-109
Identity = 168/173 (97.11%), Postives = 171/173 (98.84%), Query Frame = 0 

Query: 1   MAHTSNTAAGVDNTFRRKFDREEYLERARDREKQEVDRVKSKLKGPPVQRKPLKHRDYEV 60
           MAHTSNTAAGVDNTFRRKFDREEYLERARDREKQE +RVKSKLKGPPVQRKPLKHRDYEV
Sbjct: 1   MAHTSNTAAGVDNTFRRKFDREEYLERARDREKQEAERVKSKLKGPPVQRKPLKHRDYEV 60

Query: 61  DLESRLGKTQVVTPVAPLSQQAGYYCSVCECVVKDSANYLDHINGKKHQRALGMSMRVER 120
           DL SRLGKTQVVTPVAPLSQQAGYYCSVCECVVKDSANYLDHINGKKHQRALGMSMRVER
Sbjct: 61  DLNSRLGKTQVVTPVAPLSQQAGYYCSVCECVVKDSANYLDHINGKKHQRALGMSMRVER 120

Query: 121 ASLEQVQERFEVLKKRKTPGSFTEQDLEERILKQQQEEEQRKRERRERKKEKK 173
           ASLEQVQERFEVLKKRKTPGSFTEQDLEERI+KQQ+EEEQRKRERRERKKEKK
Sbjct: 121 ASLEQVQERFEVLKKRKTPGSFTEQDLEERIIKQQEEEEQRKRERRERKKEKK 173

[Close]
BLAST of Cucsat.G19921.T20 vs. ExPASy TrEMBL
Match: A0A6J1HQF6 (zinc finger matrin-type protein 2 OS=Cucurbita maxima OX=3661 GN=LOC111465669 PE=4 SV=1)

HSP 1 Score: 318 bits (814), Expect = 1.73e-108
Identity = 167/173 (96.53%), Postives = 171/173 (98.84%), Query Frame = 0 

Query: 1   MAHTSNTAAGVDNTFRRKFDREEYLERARDREKQEVDRVKSKLKGPPVQRKPLKHRDYEV 60
           MAHTSNTAAGVDNTFRRKFDREEYLERARDREKQE +RVKSKLKGPPVQRKPLKHRDYEV
Sbjct: 1   MAHTSNTAAGVDNTFRRKFDREEYLERARDREKQEAERVKSKLKGPPVQRKPLKHRDYEV 60

Query: 61  DLESRLGKTQVVTPVAPLSQQAGYYCSVCECVVKDSANYLDHINGKKHQRALGMSMRVER 120
           DL SRLGKTQVVTPVAPLSQQAGYYCSVCECVVKDSANYLDHINGKKHQRALGMSMRVER
Sbjct: 61  DLNSRLGKTQVVTPVAPLSQQAGYYCSVCECVVKDSANYLDHINGKKHQRALGMSMRVER 120

Query: 121 ASLEQVQERFEVLKKRKTPGSFTEQDLEERILKQQQEEEQRKRERRERKKEKK 173
           ASLEQVQERFEVLKKRKTPGSFTEQDLEERI+KQQ+EEEQRKRERRERKKE+K
Sbjct: 121 ASLEQVQERFEVLKKRKTPGSFTEQDLEERIIKQQEEEEQRKRERRERKKERK 173

[Close]
BLAST of Cucsat.G19921.T20 vs. ExPASy TrEMBL
Match: A0A6J1DQA3 (zinc finger matrin-type protein 2 OS=Momordica charantia OX=3673 GN=LOC111023331 PE=4 SV=1)

HSP 1 Score: 316 bits (809), Expect = 9.97e-108
Identity = 166/173 (95.95%), Postives = 171/173 (98.84%), Query Frame = 0 

Query: 1   MAHTSNTAAGVDNTFRRKFDREEYLERARDREKQEVDRVKSKLKGPPVQRKPLKHRDYEV 60
           MAHTSN AAGVDNTFRRKFDREEYLERARDREKQE +RVKSKLKGPPVQRKPLKHRDYEV
Sbjct: 1   MAHTSNPAAGVDNTFRRKFDREEYLERARDREKQEAERVKSKLKGPPVQRKPLKHRDYEV 60

Query: 61  DLESRLGKTQVVTPVAPLSQQAGYYCSVCECVVKDSANYLDHINGKKHQRALGMSMRVER 120
           DLESRLGKTQVVTPVAPLSQQAGYYCSVCECVVKDSANYLDHINGKKHQRALGMSMRVER
Sbjct: 61  DLESRLGKTQVVTPVAPLSQQAGYYCSVCECVVKDSANYLDHINGKKHQRALGMSMRVER 120

Query: 121 ASLEQVQERFEVLKKRKTPGSFTEQDLEERILKQQQEEEQRKRERRERKKEKK 173
           ASLEQVQERFEVLKKRKTPGSFTEQDLEERI+KQQQEEE+R+R+RRERKKEKK
Sbjct: 121 ASLEQVQERFEVLKKRKTPGSFTEQDLEERIVKQQQEEEERRRQRRERKKEKK 173

The following BLAST results are available for this feature:
BLAST of Cucsat.G19921.T20 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q96NC02.7e-3654.72Zinc finger matrin-type protein 2 OS=Homo sapiens OX=9606 GN=ZMAT2 PE=1 SV=1[more]
Q9CPW72.7e-3654.72Zinc finger matrin-type protein 2 OS=Mus musculus OX=10090 GN=Zmat2 PE=2 SV=1[more]
P346701.8e-2440.12Putative zinc finger matrin-type protein snu-23 OS=Caenorhabditis elegans OX=623... [more]
Q097764.6e-0731.71U4/U6.U5 small nuclear ribonucleoprotein component snu23 OS=Schizosaccharomyces ... [more]
BLAST of Cucsat.G19921.T20 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_011648855.12.25e-111100.00zinc finger matrin-type protein 2 [Cucumis sativus] >XP_011648858.1 zinc finger ... [more]
XP_008453709.13.73e-11098.84PREDICTED: zinc finger matrin-type protein 2 [Cucumis melo] >XP_008453717.1 PRED... [more]
XP_022938279.11.24e-10897.11zinc finger matrin-type protein 2 [Cucurbita moschata][more]
XP_023536719.11.24e-10897.11zinc finger matrin-type protein 2 [Cucurbita pepo subsp. pepo][more]
XP_022965943.13.56e-10896.53zinc finger matrin-type protein 2 [Cucurbita maxima][more]
BLAST of Cucsat.G19921.T20 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LM021.09e-111100.00U1-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G033890 PE=... [more]
A0A1S3BWZ91.80e-11098.84zinc finger matrin-type protein 2 OS=Cucumis melo OX=3656 GN=LOC103494358 PE=4 S... [more]
A0A6J1FDL76.02e-10997.11zinc finger matrin-type protein 2 OS=Cucurbita moschata OX=3662 GN=LOC111444413 ... [more]
A0A6J1HQF61.73e-10896.53zinc finger matrin-type protein 2 OS=Cucurbita maxima OX=3661 GN=LOC111465669 PE... [more]
A0A6J1DQA39.97e-10895.95zinc finger matrin-type protein 2 OS=Momordica charantia OX=3673 GN=LOC111023331... [more]
InterPro
Analysis Name: InterPro Annotations of Cucumber (B10) v3
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 116..136
NoneNo IPR availableCOILSCoilCoilcoord: 144..174
NoneNo IPR availableGENE3D3.30.160.60Classic Zinc Fingercoord: 78..116
e-value: 5.9E-7
score: 31.0
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 22..55
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 148..174
IPR003604Matrin/U1-C-like, C2H2-type zinc fingerSMARTSM00451ZnF_U1_5coord: 81..115
e-value: 2.0E-9
score: 47.3
IPR022755Zinc finger, double-stranded RNA bindingPFAMPF12171zf-C2H2_jazcoord: 84..109
e-value: 1.6E-6
score: 28.2
IPR040107U4/U6.U5 small nuclear ribonucleoprotein component Snu23PANTHERPTHR45986ZINC FINGER MATRIN-TYPE PROTEIN 2coord: 7..173
IPR036236Zinc finger C2H2 superfamilySUPERFAMILY57667beta-beta-alpha zinc fingerscoord: 79..125

Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Cucsat.G19921Cucsat.G19921gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Cucsat.G19921.T20.E1Cucsat.G19921.T20.E1exon
Cucsat.G19921.T20.E2Cucsat.G19921.T20.E2exon
Cucsat.G19921.T20.E3Cucsat.G19921.T20.E3exon
Cucsat.G19921.T20.E4Cucsat.G19921.T20.E4exon
Cucsat.G19921.T20.E5Cucsat.G19921.T20.E5exon
Cucsat.G19921.T20.E6Cucsat.G19921.T20.E6exon
Cucsat.G19921.T20.E7Cucsat.G19921.T20.E7exon
Cucsat.G19921.T20.E8Cucsat.G19921.T20.E8exon
Cucsat.G19921.T20.E9Cucsat.G19921.T20.E9exon
Cucsat.G19921.T20.E10Cucsat.G19921.T20.E10exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Cucsat.G19921.T20.C1Cucsat.G19921.T20.C1CDS
Cucsat.G19921.T20.C2Cucsat.G19921.T20.C2CDS
Cucsat.G19921.T20.C3Cucsat.G19921.T20.C3CDS
Cucsat.G19921.T20.C4Cucsat.G19921.T20.C4CDS
Cucsat.G19921.T20.C5Cucsat.G19921.T20.C5CDS
Cucsat.G19921.T20.C6Cucsat.G19921.T20.C6CDS
Cucsat.G19921.T20.C7Cucsat.G19921.T20.C7CDS
Cucsat.G19921.T20.C8Cucsat.G19921.T20.C8CDS
Cucsat.G19921.T20.C9Cucsat.G19921.T20.C9CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Cucsat.G19921.T20Cucsat.G19921.T20-proteinpolypeptide


GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0000398 mRNA splicing, via spliceosome
cellular_component GO:0005681 spliceosomal complex
cellular_component GO:0046540 U4/U6 x U5 tri-snRNP complex
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0008270 zinc ion binding