Cucsat.G19732.T5 (mRNA) Cucumber (B10) v3

Overview


Name	Cucsat.G19732.T5
Type	mRNA
Organism	Cucumis sativus L. var. sativus cv B10 (Cucumber (B10) v3)
Description	lycopene epsilon cyclase, chloroplastic
Location	ctg4: 212608 .. 213950 (+)
RNA-Seq Expression	Cucsat.G19732.T5
Synteny	Cucsat.G19732.T5

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATTCACTTCATTTTTATTCATCAAGCAGGTTATTCAGTTGTTAGATCTCTGTCTGAAGCTCCAAAATATGCTTCTGTTATTGCAAAAGTTTTGAAGCAAGGACAGCTAAAGGATGGTCTTGCTAGCGGAAGAAATTATGGGAATATCTCAATGCAGGGTGAGCCAGTTTTTTTGTTTAGATCTATCTCAAGGAGACCATTTTATTCTGTACATATATCTTTCAAGTAATTTTCAATGTTTATTAATTCATCTTCGATTCCAGCGTGGAACACTCTTTGGCCACGAGAAAGGAAACGCCAGAGAGCATTTTTTCTCTTTGGGCTTGCACTGATTGTTCAACTGGACATTGAAGGCATTCGAACATTTTTCCGGACTTTCTTCCAATTGCCAGATTGGTACGATCAATTTCCTCTTAAGATGATGACATCAAAATTTACTTATGTAGTCTGATAATCTTGTGCTTAGACTTGTAACATCCTGGTACTTTAGCTTGTTGGATTCCATAAGAAAGTAGTAGTTACTCAACATAAAGGCTGCCAATTCTAATTGAAAGTCAGAATGTTTAATTGGATGAAGGACCTTCATTAACCAATTATGTTTTAGACTAGTGATTGACATTAAGATGAAAAATCTTTTATAGTTACAAGTGAAATTGCTTTTATATCCAAGATCCTCCTCACTTCAAGCATGATACTAACCCAACCGACTAAAGCATTACGATGTAAGGAGTCTATCTAGAGAAGTGCACTATAAACTCTTTAACCTAAAAGGTGTATCTAATCTGTATATTCAATACTCTCTATACTCATGAATGTAGCTAACACTTCGGTAGTAAATTTGATGTAAATTTGTGTACAGAGTCTCTATTGTTTTACGTTTTCTTTTCTTCTTTTTCTTTAATTGTGGACAGAAGATTTTGCCGGATTGTTAATAAACTGAACGTTAGTTGTAGACTCAGTATCGTTCTTAACACGCAGGATGTGGCAAGGATTCCTTGGATCTACTTTATCTTCAGGAGACCTTGCACTTTTTGCATTGTATATGTTCGTCATTGCTCCAAATGACCTAAGAATGTGCCTCGTTAAACATCTCCTTTCTGATCCCACTGGAGCAACCATGATAAGAACATATCTCACAGTAGCTTGAAATTACCCCTTCCAAAGATTGTAGTTCCCTGTTATGTAAGAACTATGTTTAGATTCCACGAGCAGCCTGAGAGGTATTTCTTTTTTCTCCTTTTCTCTCTATGTTTCTTACTGGAGATTGTTATATGTAGTGTACATATTCACTAATCTCCTTCATCTCTTCTCTTAATTTCCATCTATTAAACTTTAGGTTGGATC

Coding sequence (CDS)

ATTCACTTCATTTTTATTCATCAAGCAGGTTATTCAGTTGTTAGATCTCTGTCTGAAGCTCCAAAATATGCTTCTGTTATTGCAAAAGTTTTGAAGCAAGGACAGCTAAAGGATGGTCTTGCTAGCGGAAGAAATTATGGGAATATCTCAATGCAGGCGTGGAACACTCTTTGGCCACGAGAAAGGAAACGCCAGAGAGCATTTTTTCTCTTTGGGCTTGCACTGATTGTTCAACTGGACATTGAAGGCATTCGAACATTTTTCCGGACTTTCTTCCAATTGCCAGATTGGATGTGGCAAGGATTCCTTGGATCTACTTTATCTTCAGGAGACCTTGCACTTTTTGCATTGTATATGTTCGTCATTGCTCCAAATGACCTAAGAATGTGCCTCGTTAAACATCTCCTTTCTGATCCCACTGGAGCAACCATGATAAGAACATATCTCACAGTAGCTTGA

Protein sequence

IHFIFIHQAGYSVVRSLSEAPKYASVIAKVLKQGQLKDGLASGRNYGNISMQAWNTLWPRERKRQRAFFLFGLALIVQLDIEGIRTFFRTFFQLPDWMWQGFLGSTLSSGDLALFALYMFVIAPNDLRMCLVKHLLSDPTGATMIRTYLTVA

Homology

[Close]

BLAST of Cucsat.G19732.T5 vs. ExPASy Swiss-Prot
Match: O65837 (Lycopene epsilon cyclase, chloroplastic OS=Solanum lycopersicum OX=4081 GN=CRTL-E-1 PE=2 SV=1)

HSP 1 Score: 212.6 bits (540), Expect = 3.1e-54
Identity = 106/146 (72.60%), Postives = 125/146 (85.62%), Query Frame = 0


Query: 6   IHQA-GYSVVRSLSEAPKYASVIAKVLKQGQLKDGLASGRNYGNISMQAWNTLWPRERKR 65
           +H A GYSVVRSLSEAPK ASV+A +L+Q   K+ L S  +  +IS QAWNTLWP+ERKR
Sbjct: 381 VHPATGYSVVRSLSEAPKCASVLANILRQHYSKNMLTSS-SIPSISTQAWNTLWPQERKR 440

Query: 66  QRAFFLFGLALIVQLDIEGIRTFFRTFFQLPDWMWQGFLGSTLSSGDLALFALYMFVIAP 125
           QR+FFLFGLALI+QLDIEGIR+FFR FF++P WMWQGFLGS+LSS DL LFA YMF+IAP
Sbjct: 441 QRSFFLFGLALILQLDIEGIRSFFRAFFRVPKWMWQGFLGSSLSSADLMLFAFYMFIIAP 500

Query: 126 NDLRMCLVKHLLSDPTGATMIRTYLT 151
           ND+R  L++HLLSDPTGAT+IRTYLT
Sbjct: 501 NDMRKGLIRHLLSDPTGATLIRTYLT 525

[Close]

BLAST of Cucsat.G19732.T5 vs. ExPASy Swiss-Prot
Match: Q38932 (Lycopene epsilon cyclase, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=LUT2 PE=1 SV=2)

HSP 1 Score: 212.2 bits (539), Expect = 4.0e-54
Identity = 108/147 (73.47%), Postives = 123/147 (83.67%), Query Frame = 0


Query: 6   IHQA-GYSVVRSLSEAPKYASVIAKVLKQGQLKDGLASGRNYGNISMQAWNTLWPRERKR 65
           +H A GYSVVRSLSEAPKYASVIA++L++   K      +   NIS QAW+TLWP ERKR
Sbjct: 384 VHPATGYSVVRSLSEAPKYASVIAEILREETTK------QINSNISRQAWDTLWPPERKR 443

Query: 66  QRAFFLFGLALIVQLDIEGIRTFFRTFFQLPDWMWQGFLGSTLSSGDLALFALYMFVIAP 125
           QRAFFLFGLALIVQ D EGIR+FFRTFF+LP WMWQGFLGSTL+SGDL LFALYMFVI+P
Sbjct: 444 QRAFFLFGLALIVQFDTEGIRSFFRTFFRLPKWMWQGFLGSTLTSGDLVLFALYMFVISP 503

Query: 126 NDLRMCLVKHLLSDPTGATMIRTYLTV 152
           N+LR  L+ HL+SDPTGATMI+TYL V
Sbjct: 504 NNLRKGLINHLISDPTGATMIKTYLKV 524

[Close]

BLAST of Cucsat.G19732.T5 vs. ExPASy Swiss-Prot
Match: D9IL24 (Lycopene epsilon cyclase, chloroplastic OS=Oncidium hybrid cultivar OX=141207 GN=LCY-E PE=2 SV=1)

HSP 1 Score: 203.0 bits (515), Expect = 2.4e-51
Identity = 103/148 (69.59%), Postives = 119/148 (80.41%), Query Frame = 0


Query: 6   IHQA-GYSVVRSLSEAPKYASVIAKVLKQ-GQLKDGLASGRNYGNISMQAWNTLWPRERK 65
           +H A GYS+VRSLSEAP+YASVI  +LK+          G +Y N S+ AW TLWP+E K
Sbjct: 372 VHPATGYSIVRSLSEAPQYASVITNILKRNSNSSQNNVIGSSY-NPSVLAWRTLWPQEGK 431

Query: 66  RQRAFFLFGLALIVQLDIEGIRTFFRTFFQLPDWMWQGFLGSTLSSGDLALFALYMFVIA 125
           RQRAFFLFGLALI+QLDI+GIR FF+TFF+LPDWMWQGFLGSTLSS  L  FA YMF IA
Sbjct: 432 RQRAFFLFGLALILQLDIDGIRIFFQTFFRLPDWMWQGFLGSTLSSAGLIWFAFYMFAIA 491

Query: 126 PNDLRMCLVKHLLSDPTGATMIRTYLTV 152
           PN LR+CL+KHLLSDPTG+TMIR YLT+
Sbjct: 492 PNSLRICLIKHLLSDPTGSTMIREYLTL 518

[Close]

BLAST of Cucsat.G19732.T5 vs. ExPASy Swiss-Prot
Match: Q40424 (Lycopene beta cyclase, chloroplastic/chromoplastic OS=Narcissus pseudonarcissus OX=39639 GN=LCY1 PE=2 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 6.7e-17
Identity = 48/120 (40.00%), Postives = 68/120 (56.67%), Query Frame = 0


Query: 10  GYSVVRSLSEAPKYASVIAKVLKQGQLKDGLASGRNYGNISMQAWNTLWPRERKRQRAFF 69
           GY V R+L+ AP    ++A  + Q  + D   SG +  ++S   W  LWP ER+RQR FF
Sbjct: 369 GYMVARTLAAAP----IVANSIVQYLVSD---SGLSGNDLSADVWKDLWPIERRRQREFF 428

Query: 70  LFGLALIVQLDIEGIRTFFRTFFQLPDWMWQGFLGSTLSSGDLALFALYMFVIAPNDLRM 129
            FG+ ++++LD+EG R FF  FF L    W GFL S L   +L  F L +F  A N  ++
Sbjct: 429 CFGMDILLKLDLEGTRRFFDAFFDLEPRYWHGFLSSRLFLPELVPFGLSLFSHASNTCKL 481

[Close]

BLAST of Cucsat.G19732.T5 vs. ExPASy Swiss-Prot
Match: Q38933 (Lycopene beta cyclase, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=LCY1 PE=1 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 4.3e-16
Identity = 47/120 (39.17%), Postives = 65/120 (54.17%), Query Frame = 0


Query: 10  GYSVVRSLSEAPKYASVIAKVLKQGQLKDGLASGRNYGNISMQAWNTLWPRERKRQRAFF 69
           GY V R+L+ AP  A+ I + L  G        G     +S + W  LWP ER+RQR FF
Sbjct: 365 GYMVARTLAAAPIVANAIVRYL--GSPSSNSLRG---DQLSAEVWRDLWPIERRRQREFF 424

Query: 70  LFGLALIVQLDIEGIRTFFRTFFQLPDWMWQGFLGSTLSSGDLALFALYMFVIAPNDLRM 129
            FG+ ++++LD++  R FF  FF L    W GFL S L   +L +F L +F  A N  R+
Sbjct: 425 CFGMDILLKLDLDATRRFFDAFFDLQPHYWHGFLSSRLFLPELLVFGLSLFSHASNTSRL 479

[Close]

BLAST of Cucsat.G19732.T5 vs. NCBI nr
Match: XP_004141172.1 (lycopene epsilon cyclase, chloroplastic [Cucumis sativus] >KGN60527.1 hypothetical protein Csa_019286 [Cucumis sativus])

HSP 1 Score: 291 bits (744), Expect = 1.15e-93
Identity = 145/148 (97.97%), Postives = 146/148 (98.65%), Query Frame = 0


Query: 6   IHQA-GYSVVRSLSEAPKYASVIAKVLKQGQLKDGLASGRNYGNISMQAWNTLWPRERKR 65
           +H A GYSVVRSLSEAPKYASVIAKVLKQGQLKDGLASGRNYGNISMQAWNTLWPRERKR
Sbjct: 386 VHPATGYSVVRSLSEAPKYASVIAKVLKQGQLKDGLASGRNYGNISMQAWNTLWPRERKR 445

Query: 66  QRAFFLFGLALIVQLDIEGIRTFFRTFFQLPDWMWQGFLGSTLSSGDLALFALYMFVIAP 125
           QRAFFLFGLALIVQLDIEGIRTFFRTFFQLPDWMWQGFLGSTLSSGDLALFALYMFVIAP
Sbjct: 446 QRAFFLFGLALIVQLDIEGIRTFFRTFFQLPDWMWQGFLGSTLSSGDLALFALYMFVIAP 505

Query: 126 NDLRMCLVKHLLSDPTGATMIRTYLTVA 152
           NDLRMCLVKHLLSDPTGATMIRTYLTVA
Sbjct: 506 NDLRMCLVKHLLSDPTGATMIRTYLTVA 533

[Close]

BLAST of Cucsat.G19732.T5 vs. NCBI nr
Match: AGN48015.1 (lycopene cyclase [Cucumis melo])

HSP 1 Score: 285 bits (728), Expect = 9.46e-93
Identity = 142/148 (95.95%), Postives = 144/148 (97.30%), Query Frame = 0


Query: 6   IHQA-GYSVVRSLSEAPKYASVIAKVLKQGQLKDGLASGRNYGNISMQAWNTLWPRERKR 65
           +H A GYSVVRSLSEAPKYASVIAKVLKQGQLKDGLASGRNYGNISM AWNTLWPRERKR
Sbjct: 265 VHPATGYSVVRSLSEAPKYASVIAKVLKQGQLKDGLASGRNYGNISMLAWNTLWPRERKR 324

Query: 66  QRAFFLFGLALIVQLDIEGIRTFFRTFFQLPDWMWQGFLGSTLSSGDLALFALYMFVIAP 125
           QRAFFLFGLALIVQLDIEGIRTFFRTFFQLPDWMWQGFLGSTLSS DLALFALYMFVIAP
Sbjct: 325 QRAFFLFGLALIVQLDIEGIRTFFRTFFQLPDWMWQGFLGSTLSSADLALFALYMFVIAP 384

Query: 126 NDLRMCLVKHLLSDPTGATMIRTYLTVA 152
           NDLRMCLVKHLLSDPTGATMIRTYLT+A
Sbjct: 385 NDLRMCLVKHLLSDPTGATMIRTYLTLA 412

[Close]

BLAST of Cucsat.G19732.T5 vs. NCBI nr
Match: KAA0061483.1 (lycopene epsilon cyclase [Cucumis melo var. makuwa])

HSP 1 Score: 285 bits (728), Expect = 2.91e-91
Identity = 142/148 (95.95%), Postives = 144/148 (97.30%), Query Frame = 0


Query: 6   IHQA-GYSVVRSLSEAPKYASVIAKVLKQGQLKDGLASGRNYGNISMQAWNTLWPRERKR 65
           +H A GYSVVRSLSEAPKYASVIAKVLKQGQLKDGLASGRNYGNISM AWNTLWPRERKR
Sbjct: 386 VHPATGYSVVRSLSEAPKYASVIAKVLKQGQLKDGLASGRNYGNISMLAWNTLWPRERKR 445

Query: 66  QRAFFLFGLALIVQLDIEGIRTFFRTFFQLPDWMWQGFLGSTLSSGDLALFALYMFVIAP 125
           QRAFFLFGLALIVQLDIEGIRTFFRTFFQLPDWMWQGFLGSTLSS DLALFALYMFVIAP
Sbjct: 446 QRAFFLFGLALIVQLDIEGIRTFFRTFFQLPDWMWQGFLGSTLSSADLALFALYMFVIAP 505

Query: 126 NDLRMCLVKHLLSDPTGATMIRTYLTVA 152
           NDLRMCLVKHLLSDPTGATMIRTYLT+A
Sbjct: 506 NDLRMCLVKHLLSDPTGATMIRTYLTLA 533

[Close]

BLAST of Cucsat.G19732.T5 vs. NCBI nr
Match: NP_001315403.1 (lycopene epsilon cyclase, chloroplastic [Cucumis melo] >AID51466.1 lycopene epsilon cyclase [Cucumis melo var. makuwa] >TYK10791.1 lycopene epsilon cyclase [Cucumis melo var. makuwa])

HSP 1 Score: 285 bits (728), Expect = 2.91e-91
Identity = 142/148 (95.95%), Postives = 144/148 (97.30%), Query Frame = 0


Query: 6   IHQA-GYSVVRSLSEAPKYASVIAKVLKQGQLKDGLASGRNYGNISMQAWNTLWPRERKR 65
           +H A GYSVVRSLSEAPKYASVIAKVLKQGQLKDGLASGRNYGNISM AWNTLWPRERKR
Sbjct: 386 VHPATGYSVVRSLSEAPKYASVIAKVLKQGQLKDGLASGRNYGNISMLAWNTLWPRERKR 445

Query: 66  QRAFFLFGLALIVQLDIEGIRTFFRTFFQLPDWMWQGFLGSTLSSGDLALFALYMFVIAP 125
           QRAFFLFGLALIVQLDIEGIRTFFRTFFQLPDWMWQGFLGSTLSS DLALFALYMFVIAP
Sbjct: 446 QRAFFLFGLALIVQLDIEGIRTFFRTFFQLPDWMWQGFLGSTLSSADLALFALYMFVIAP 505

Query: 126 NDLRMCLVKHLLSDPTGATMIRTYLTVA 152
           NDLRMCLVKHLLSDPTGATMIRTYLT+A
Sbjct: 506 NDLRMCLVKHLLSDPTGATMIRTYLTLA 533

[Close]

BLAST of Cucsat.G19732.T5 vs. NCBI nr
Match: AEN94903.1 (lycopene epsilon cyclase, partial [Cucurbita moschata])

HSP 1 Score: 278 bits (710), Expect = 4.14e-91
Identity = 136/148 (91.89%), Postives = 144/148 (97.30%), Query Frame = 0


Query: 6   IHQA-GYSVVRSLSEAPKYASVIAKVLKQGQLKDGLASGRNYGNISMQAWNTLWPRERKR 65
           +H A GYSVVRSLSEAPKYASVIA+VLK+GQLKDGLA+GR YGNISMQAWNTLWP+ERKR
Sbjct: 184 VHPATGYSVVRSLSEAPKYASVIARVLKRGQLKDGLANGRTYGNISMQAWNTLWPQERKR 243

Query: 66  QRAFFLFGLALIVQLDIEGIRTFFRTFFQLPDWMWQGFLGSTLSSGDLALFALYMFVIAP 125
           QRAFFLFGLALIVQLDIEGIRTFFRTFFQLPDWMWQGFLGSTLSS DLALFALYMFV+AP
Sbjct: 244 QRAFFLFGLALIVQLDIEGIRTFFRTFFQLPDWMWQGFLGSTLSSADLALFALYMFVLAP 303

Query: 126 NDLRMCLVKHLLSDPTGATMIRTYLTVA 152
           NDLRMCLVKHL+SDPTGATMIRTYLTV+
Sbjct: 304 NDLRMCLVKHLVSDPTGATMIRTYLTVS 331

[Close]

BLAST of Cucsat.G19732.T5 vs. ExPASy TrEMBL
Match: A0A0A0LIM3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G000360 PE=3 SV=1)

HSP 1 Score: 291 bits (744), Expect = 5.55e-94
Identity = 145/148 (97.97%), Postives = 146/148 (98.65%), Query Frame = 0


Query: 6   IHQA-GYSVVRSLSEAPKYASVIAKVLKQGQLKDGLASGRNYGNISMQAWNTLWPRERKR 65
           +H A GYSVVRSLSEAPKYASVIAKVLKQGQLKDGLASGRNYGNISMQAWNTLWPRERKR
Sbjct: 386 VHPATGYSVVRSLSEAPKYASVIAKVLKQGQLKDGLASGRNYGNISMQAWNTLWPRERKR 445

Query: 66  QRAFFLFGLALIVQLDIEGIRTFFRTFFQLPDWMWQGFLGSTLSSGDLALFALYMFVIAP 125
           QRAFFLFGLALIVQLDIEGIRTFFRTFFQLPDWMWQGFLGSTLSSGDLALFALYMFVIAP
Sbjct: 446 QRAFFLFGLALIVQLDIEGIRTFFRTFFQLPDWMWQGFLGSTLSSGDLALFALYMFVIAP 505

Query: 126 NDLRMCLVKHLLSDPTGATMIRTYLTVA 152
           NDLRMCLVKHLLSDPTGATMIRTYLTVA
Sbjct: 506 NDLRMCLVKHLLSDPTGATMIRTYLTVA 533

[Close]

BLAST of Cucsat.G19732.T5 vs. ExPASy TrEMBL
Match: T1RR84 (Lycopene cyclase OS=Cucumis melo OX=3656 GN=LECY PE=4 SV=1)

HSP 1 Score: 285 bits (728), Expect = 4.58e-93
Identity = 142/148 (95.95%), Postives = 144/148 (97.30%), Query Frame = 0


Query: 6   IHQA-GYSVVRSLSEAPKYASVIAKVLKQGQLKDGLASGRNYGNISMQAWNTLWPRERKR 65
           +H A GYSVVRSLSEAPKYASVIAKVLKQGQLKDGLASGRNYGNISM AWNTLWPRERKR
Sbjct: 265 VHPATGYSVVRSLSEAPKYASVIAKVLKQGQLKDGLASGRNYGNISMLAWNTLWPRERKR 324

Query: 66  QRAFFLFGLALIVQLDIEGIRTFFRTFFQLPDWMWQGFLGSTLSSGDLALFALYMFVIAP 125
           QRAFFLFGLALIVQLDIEGIRTFFRTFFQLPDWMWQGFLGSTLSS DLALFALYMFVIAP
Sbjct: 325 QRAFFLFGLALIVQLDIEGIRTFFRTFFQLPDWMWQGFLGSTLSSADLALFALYMFVIAP 384

Query: 126 NDLRMCLVKHLLSDPTGATMIRTYLTVA 152
           NDLRMCLVKHLLSDPTGATMIRTYLT+A
Sbjct: 385 NDLRMCLVKHLLSDPTGATMIRTYLTLA 412

[Close]

BLAST of Cucsat.G19732.T5 vs. ExPASy TrEMBL
Match: A0A088CHT9 (Lycopene epsilon cyclase OS=Cucumis melo var. makuwa OX=1194695 GN=LCYE PE=2 SV=1)

HSP 1 Score: 285 bits (728), Expect = 1.41e-91
Identity = 142/148 (95.95%), Postives = 144/148 (97.30%), Query Frame = 0


Query: 6   IHQA-GYSVVRSLSEAPKYASVIAKVLKQGQLKDGLASGRNYGNISMQAWNTLWPRERKR 65
           +H A GYSVVRSLSEAPKYASVIAKVLKQGQLKDGLASGRNYGNISM AWNTLWPRERKR
Sbjct: 386 VHPATGYSVVRSLSEAPKYASVIAKVLKQGQLKDGLASGRNYGNISMLAWNTLWPRERKR 445

Query: 66  QRAFFLFGLALIVQLDIEGIRTFFRTFFQLPDWMWQGFLGSTLSSGDLALFALYMFVIAP 125
           QRAFFLFGLALIVQLDIEGIRTFFRTFFQLPDWMWQGFLGSTLSS DLALFALYMFVIAP
Sbjct: 446 QRAFFLFGLALIVQLDIEGIRTFFRTFFQLPDWMWQGFLGSTLSSADLALFALYMFVIAP 505

Query: 126 NDLRMCLVKHLLSDPTGATMIRTYLTVA 152
           NDLRMCLVKHLLSDPTGATMIRTYLT+A
Sbjct: 506 NDLRMCLVKHLLSDPTGATMIRTYLTLA 533

[Close]

BLAST of Cucsat.G19732.T5 vs. ExPASy TrEMBL
Match: A0A5A7UZW2 (Lycopene epsilon cyclase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold41G00430 PE=3 SV=1)

HSP 1 Score: 285 bits (728), Expect = 1.41e-91
Identity = 142/148 (95.95%), Postives = 144/148 (97.30%), Query Frame = 0


Query: 6   IHQA-GYSVVRSLSEAPKYASVIAKVLKQGQLKDGLASGRNYGNISMQAWNTLWPRERKR 65
           +H A GYSVVRSLSEAPKYASVIAKVLKQGQLKDGLASGRNYGNISM AWNTLWPRERKR
Sbjct: 386 VHPATGYSVVRSLSEAPKYASVIAKVLKQGQLKDGLASGRNYGNISMLAWNTLWPRERKR 445

Query: 66  QRAFFLFGLALIVQLDIEGIRTFFRTFFQLPDWMWQGFLGSTLSSGDLALFALYMFVIAP 125
           QRAFFLFGLALIVQLDIEGIRTFFRTFFQLPDWMWQGFLGSTLSS DLALFALYMFVIAP
Sbjct: 446 QRAFFLFGLALIVQLDIEGIRTFFRTFFQLPDWMWQGFLGSTLSSADLALFALYMFVIAP 505

Query: 126 NDLRMCLVKHLLSDPTGATMIRTYLTVA 152
           NDLRMCLVKHLLSDPTGATMIRTYLT+A
Sbjct: 506 NDLRMCLVKHLLSDPTGATMIRTYLTLA 533

[Close]

BLAST of Cucsat.G19732.T5 vs. ExPASy TrEMBL
Match: A0A1S3C9T0 (lycopene epsilon cyclase, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103498607 PE=3 SV=1)

HSP 1 Score: 285 bits (728), Expect = 1.41e-91
Identity = 142/148 (95.95%), Postives = 144/148 (97.30%), Query Frame = 0


Query: 6   IHQA-GYSVVRSLSEAPKYASVIAKVLKQGQLKDGLASGRNYGNISMQAWNTLWPRERKR 65
           +H A GYSVVRSLSEAPKYASVIAKVLKQGQLKDGLASGRNYGNISM AWNTLWPRERKR
Sbjct: 386 VHPATGYSVVRSLSEAPKYASVIAKVLKQGQLKDGLASGRNYGNISMLAWNTLWPRERKR 445

Query: 66  QRAFFLFGLALIVQLDIEGIRTFFRTFFQLPDWMWQGFLGSTLSSGDLALFALYMFVIAP 125
           QRAFFLFGLALIVQLDIEGIRTFFRTFFQLPDWMWQGFLGSTLSS DLALFALYMFVIAP
Sbjct: 446 QRAFFLFGLALIVQLDIEGIRTFFRTFFQLPDWMWQGFLGSTLSSADLALFALYMFVIAP 505

Query: 126 NDLRMCLVKHLLSDPTGATMIRTYLTVA 152
           NDLRMCLVKHLLSDPTGATMIRTYLT+A
Sbjct: 506 NDLRMCLVKHLLSDPTGATMIRTYLTLA 533

The following BLAST results are available for this feature:

BLAST of Cucsat.G19732.T5 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O65837	3.1e-54	72.60	Lycopene epsilon cyclase, chloroplastic OS=Solanum lycopersicum OX=4081 GN=CRTL-...	[more]
Q38932	4.0e-54	73.47	Lycopene epsilon cyclase, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=LUT2 ...	[more]
D9IL24	2.4e-51	69.59	Lycopene epsilon cyclase, chloroplastic OS=Oncidium hybrid cultivar OX=141207 GN...	[more]
Q40424	6.7e-17	40.00	Lycopene beta cyclase, chloroplastic/chromoplastic OS=Narcissus pseudonarcissus ...	[more]
Q38933	4.3e-16	39.17	Lycopene beta cyclase, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=LCY1 PE=...	[more]

BLAST of Cucsat.G19732.T5 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004141172.1	1.15e-93	97.97	lycopene epsilon cyclase, chloroplastic [Cucumis sativus] >KGN60527.1 hypothetic...	[more]
AGN48015.1	9.46e-93	95.95	lycopene cyclase [Cucumis melo]	[more]
KAA0061483.1	2.91e-91	95.95	lycopene epsilon cyclase [Cucumis melo var. makuwa]	[more]
NP_001315403.1	2.91e-91	95.95	lycopene epsilon cyclase, chloroplastic [Cucumis melo] >AID51466.1 lycopene epsi...	[more]
AEN94903.1	4.14e-91	91.89	lycopene epsilon cyclase, partial [Cucurbita moschata]	[more]

BLAST of Cucsat.G19732.T5 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LIM3	5.55e-94	97.97	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G000360 PE=3 SV=1	[more]
T1RR84	4.58e-93	95.95	Lycopene cyclase OS=Cucumis melo OX=3656 GN=LECY PE=4 SV=1	[more]
A0A088CHT9	1.41e-91	95.95	Lycopene epsilon cyclase OS=Cucumis melo var. makuwa OX=1194695 GN=LCYE PE=2 SV=...	[more]
A0A5A7UZW2	1.41e-91	95.95	Lycopene epsilon cyclase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffol...	[more]
A0A1S3C9T0	1.41e-91	95.95	lycopene epsilon cyclase, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103498607 ...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (B10) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PFAM	PF05834	Lycopene_cycl	coord: 9..128 e-value: 1.9E-37 score: 129.3
None	No IPR available	PANTHER	PTHR39757	FAMILY NOT NAMED	coord: 9..150

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cucsat.G19732	Cucsat.G19732	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cucsat.G19732.T5.E1	Cucsat.G19732.T5.E1	exon
Cucsat.G19732.T5.E2	Cucsat.G19732.T5.E2	exon
Cucsat.G19732.T5.E3	Cucsat.G19732.T5.E3	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cucsat.G19732.T5.C1	Cucsat.G19732.T5.C1	CDS
Cucsat.G19732.T5.C2	Cucsat.G19732.T5.C2	CDS
Cucsat.G19732.T5.C3	Cucsat.G19732.T5.C3	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cucsat.G19732.T5	Cucsat.G19732.T5-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016120	carotene biosynthetic process
biological_process	GO:0016117	carotenoid biosynthetic process
biological_process	GO:0006744	ubiquinone biosynthetic process
biological_process	GO:0016123	xanthophyll biosynthetic process
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0016705	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen