Cucsat.G19732 (gene) Cucumber (B10) v3

Overview
NameCucsat.G19732
Typegene
OrganismCucumis sativus L. var. sativus cv B10 (Cucumber (B10) v3)
Descriptionlycopene epsilon cyclase, chloroplastic
Locationctg4: 212268 .. 213950 (+)
RNA-Seq ExpressionCucsat.G19732
SyntenyCucsat.G19732
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
TATCTTTTTCAAGGGACTTAAAACCAATGAGTTGTTCACACGTGGAGTTGGGGGATGGCCGTTTGACAAATCAGTGAATAAAACACCACCATTTAATTTCCCTCCCTATCCCACAACCTACAAAATTGGAGGTTAAGCCCAAGTAAACAATTCCAGAACTAGCGAGGCATCGCCAAATCCCATTCTCATGCTCTCTTTTGCTTTTGCTTTTGCTTATTCCATCTTCTTTTCCAACTCTAAAGCTCCATTAATGGCGTAGTTGCTTGCTTCTTCTGTTACCAAAAAAACCTTCAATGGAGTGTATGGGACTCACTGCTCGGAACTTTGCGGCAATGGCCGCTTCTTATACCTCTAATCTACCTTCCACTGGAACTAGGAGACTCCGGTTATTATGTAGAACAGAAAGTCTTCAGTTCCGTTTGCGTCGTCCTTCGGTGTTTGTTATGGCAAGTGCTGGAAGTGAGAGTTGTATCGCAGTCAGAGAAGGATTCGCAGACGACGAAGATTATATCAAGGGCGGTGGCTCTGAGCTTCTGTTTGTTCAAATGCAGCAGAACAAGACGATGGAGATGCAGTCCAAGCTCGCCGACGAGGTTCGGCTATCTCTTCCCATTCTTCATACTATTTCATCGCTTACCTTTTTGCTATTTTACTCGCCATTGCTTTTTGCAGTTTGTCGATAATTATTAAATGCTCAAATTCATTTCAACTTTTTTTTTTTTTACTTGTTATTTGGATTGATGCCGCTATAATTTTAATATGATTGTGTTCGTAAAAGCTAAAACTCCCTACAATTTAATCTTGTATGCATTAATGACTCAATCCACCCTAATTTCAAAGCTTATGCATATGGGAATTTGGAGAATTTAAGATTATATATGTGGGCCTCTATTATTTGATTAAACTATGCAATTATACTTCAGATGCTTAGTTTAATGAAACTATTGTCTCTATGACTCACTCTCCATTTTTCAACTTCGGGTTATTACTCATGGCCAACGTTTCAGTTTTCTTTAACGTCCGGCATAAGAATTAGGATTGCACTGATATTGTTGGATTTGATCGAGGACGTTTCAATTTTGATACGACTAAAGATGTTACTTCTCTAGAAGTTTGAAGTATATAATCAATACTTCTTTGATAATGCAATATTGTTTTGAAAAATAAGTAATTCTCGAAAGGGTTGAACTGTATTTTCTTTTCCATTATCTTTTGTGTGATTCTGTTTCTAGTAATGAGTATTATTCTACAGGCGTTTCAATTTAAGTGTGGGATACCTCCTTTTATTATTGTTGCAGCTACCGCCAATATCAGTTGGAAATGGCGTATTGGACTTGGTTGTTATTGGTTGTGGTCCTGCTGGTCTTGCTCTGGCTGCGGAATCGGCTGCTTTGGGGTTAAAAGTTGGACTCATTGGTCCAGATCTGCCATTTACAAATAATTATGGCGTGTGGGAAGATGAATTTAAAGGTATGTTGATGCATGCTTCTCATTCTTTTAGCAACATTTCGTACCGCCCTGGACTTAGTTCAGTCTTAAACTATGCTCATAATAAGCGAATAACTAAGGAGAAATTGTTTCCAAAATCCATCTCACTATGTTATAGAATATATTTCTCCTTACCCTTCTAATATAACTCATTAAATCCATTCCAAAAGTTTTAAATGGTTATATTCTCACCTGTGTCATAAGGTGCGAATATCCATTGAATGATAAATTACATCCAGTTTAATGCCTGGAAGCTTTCGTGTGAAGCGACAAGATAAATTACTATGGATGAACTCCAGCCTCCACTTTCATCTAAACTCTATTTTTCAACTTTACAGATCTTGGGCTTGAAGGGTGTATAGAGCATGTATGGCCGGATACAGTCATATATCTTGATGACAAGGATCCTGTTCTTATTGGCCGTGCATATGGACGTGTTAGTAGGCATTTGCTTCACGAAGAGCTGCTTAAAAAGTAAGTGTGATTTTTGGTACAACTACTTATTTGTACATTTGGAATTTATATAATGTAATAATTTCTGTAGGTGTATCAAGTCGGGTGTTTCATATCTCAACTCCAGAGTGGACAGCATTACGGAAACTGCCACTGGCCATAGCCTTGTAGCCTGTGAACATGATATTTTTGTTCCGTGCAGGTAAAATGGCATTACCTTATTTTCATGCTGTTGGCCTCGTTGTGAATTTCGACGCAGCTCGCTTATATTAACTATTTGTTCCTTCCTCAAATATTAAAATTTGTATTGTAGACTGGCAACAGTTGCATCAGGAGCAGCTTCAGGTAAATTGTTGCAGTACGAGGTTGGTGGGCCAAAGGTGTCTGTCCAAACAGCTTATGGTGTGGAGGTTGAGGTAGGAAGGAGAATTCCTCTGTTTATTTTTCTTTCTTTTCCTCCTACGTACAGACGACTTGTACAATCTCTAAACAAGTTGTATTGTTCTATGATAGTCACTGCTTAGTTTGCAAATCATTCCTTGAATACCGTGTTGAAAGAAACTCTTAGACAGAGTTTCAACTTCCTTTAGCTAATATTAAAAATTAAGGTGTACTATATATTTCATGCAGTCTGCTACCTGAGGTAAAACGTGAAATGTAGAATTAGATGAGTTTTATCGAACCATTACTTGTAATTCTCGATAATGCGCTGTAGTGTTATTTTCTCAACAAAATAATCTTCGGTTCTTGAAATTTTGTTGTGTCGATAACTAATCTGTGCTTCTGTATGGCCATTTCAGGTGGAAAACAATCCTTATGATCCAAGTCTTATGGTTTTTATGGACTACAGGGACTACGCAAAGCAAGAAAATTCTTCTTTAGAAGCACAATATCCTACATTTCTTTACGCCATGCCCATGTCTCCGACAAAAGTATTCTTTGAGGTCTGCACAGTTGTTATTTATTAGTTTATCTTTGTATTTTATTTTTCTCAGAATCATGTATGAATTATACTTGGAAATTAAAATTTTGCAGGAAACTTGTTTAGCTTCAAAAGAAGCTATGCCATTTGATCTGTTAAAGAAAAAACTCATGTCTAGATTAAAGACAATGGGGATCCGAATAGTGAAAACATATGAAGAGGTACTGTTCGTGAATGATATTATTGCGTTTAAAGCATGTTACAACTTACTATTTGTTCGATACCTCCTTACATCTGACATCTGCTTCAGAACAATACTGAGATGGGCGTCCATGTCATGTGTATGTCTGTTTTTTCCCCTCCATTCTTCCTACTAGTAGCGAGTCAACTAGGAGAGTGAAGTATATAGGAAACAAATCCCTTTCAAAATAAGATAGAAGACGTAGATGAATTATCAACCTTCCTTTTCTGGAAGTTTTGAATTGCACCCTTTTCGTGTGGCTTTTATGTGTCGTATTCTTATTGGTGCATGTTGACGTACAATTAACATGAAAAGGTGTGTAAGCATATGAAGTTTTACCATCTCTCATTACACTGTGAATGATGCTTTTGCATCAGTTGAGATCTATGACTGCAAATCAGTGTAATGTTAGTTACACTCAAATATTTGCTTCCCTGCTTTTCAGCAGACCAACCAGAACTGAGTAAATTTCCACACCTATTGATGGATGGGGTAGAAGATCATTATTTGTGACGAAACTAGTTGTTTATAAATTTGTTTTCCTCAGAATAATGCATGGCATGAAGCTCTCTCCGGTTAAATTCCAATACTTTGTTTGTTTATCGCATATGCTATCAGTTTTCTTCCATTTCAAGTTATCAAATTTTGTACACCTTCTTATTCTTTACAGTTCTCGTATAAACCAGTTAAAGAATGAAAAGGATGTAATCTTTCATGTAGGAATGGTCTTATATTCCAGTTGGTGGATCCTTGCCAAACACAGAGCAGAAAAACCTCGCATTTGGTGCAGCTGCCAGCATGGTACATCCAGCCACCGGTATTAAAAAAGCGACCTGAACATACATCTTATAGAATAATCAGTCTAAAAAAATCTTATTCACTTCATTTTTATTCATCAAGCAGGTTATTCAGTTGTTAGATCTCTGTCTGAAGCTCCAAAATATGCTTCTGTTATTGCAAAAGTTTTGAAGCAAGGACAGCTAAAGGATGGTCTTGCTAGCGGAAGAAATTATGGGAATATCTCAATGCAGGGTGAGCCAGTTTTTTTGTTTAGATCTATCTCAAGGAGACCATTTTATTCTGTACATATATCTTTCAAGTAATTTTCAATGTTTATTAATTCATCTTCGATTCCAGCGTGGAACACTCTTTGGCCACGAGAAAGGAAACGCCAGAGAGCATTTTTTCTCTTTGGGCTTGCACTGATTGTTCAACTGGACATTGAAGGCATTCGAACATTTTTCCGGACTTTCTTCCAATTGCCAGATTGGTACGATCAATTTCCTCTTAAGATGATGACATCAAAATTTACTTATGTAGTCTGATAATCTTGTGCTTAGACTTGTAACATCCTGGTACTTTAGCTTGTTGGATTCCATAAGAAAGTAGTAGTTACTCAACATAAAGGCTGCCAATTCTAATTGAAAGTCAGAATGTTTAATTGGATGAAGGACCTTCATTAACCAATTATGTTTTAGACTAGTGATTGACATTAAGATGAAAAATCTTTTATAGTTACAAGTGAAATTGCTTTTATATCCAAGATCCTCCTCACTTCAAGCATGATACTAACCCAACCGACTAAAGCATTACGATGTAAGGAGTCTATCTAGAGAAGTGCACTATAAACTCTTTAACCTAAAAGGTGTATCTAATCTGTATATTCAATACTCTCTATACTCATGAATGTAGCTAACACTTCGGTAGTAAATTTGATGTAAATTTGTGTACAGAGTCTCTATTGTTTTACGTTTTCTTTTCTTCTTTTTCTTTAATTGTGGACAGAAGATTTTGCCGGATTGTTAATAAACTGAACGTTAGTTGTAGACTCAGTATCGTTCTTAACACGCAGGATGTGGCAAGGATTCCTTGGATCTACTTTATCTTCAGGAGACCTTGCACTTTTTGCATTGTATATGTTCGTCATTGCTCCAAATGACCTAAGAATGTGCCTCGTTAAACATCTCCTTTCTGATCCCACTGGAGCAACCATGATAAGAACATATCTCACAGTAGCTTGAAATTACCCCTTCCAAAGATTGTAGTTCCCTGTTATGTAAGAACTATGTTTAGATTCCACGAGCAGCCTGAGAGGTATTTCTTTTTTCTCCTTTTCTCTCTATGTTTCTTACTGGAGATTGTTATATGTAGTGTACATATTCACTAATCTCCTTCATCTCTTCTCTTAATTTCCATCTATTAAACTTTAGGTTGGATCTCTTACCCACTGCTGTACTTGAAAAAAAAAGGTATTTTCATATAGCTTATGGAAGAATATATCTATGTATACAATAAATCATAAATCTTATCCAAAGTTAAATAGTGGTGGTTATTTTCTCTTCATAAAGGTTCCCAAACCCAATGGCCGGAAATAAGTGATTCAAGGACGATAGGGAAAGGATAATTGCAATAGATAGACATTTGTTCAATATATAAATAAAAAAGGTTCTAGCTTTTAGATTTTAAAATTTTAATTTTAATTTGATTTTAAATCT

Coding sequence (CDS)

ATGGAGTGTATGGGACTCACTGCTCGGAACTTTGCGGCAATGGCCGCTTCTTATACCTCTAATCTACCTTCCACTGGAACTAGGAGACTCCGGTTATTATGTAGAACAGAAAGTCTTCAGTTCCGTTTGCGTCGTCCTTCGGTGTTTGTTATGGCAAGTGCTGGAAGTGAGAGTTGTATCGCAGTCAGAGAAGGATTCGCAGACGACGAAGATTATATCAAGGGCGGTGGCTCTGAGCTTCTGTTTGTTCAAATGCAGCAGAACAAGACGATGGAGATGCAGTCCAAGCTCGCCGACGAGCTACCGCCAATATCAGTTGGAAATGGCGTATTGGACTTGGTTGTTATTGGTTGTGGTCCTGCTGGTCTTGCTCTGGCTGCGGAATCGGCTGCTTTGGGGTTAAAAGTTGGACTCATTGGTCCAGATCTGCCATTTACAAATAATTATGGCGTGTGGGAAGATGAATTTAAAGATCTTGGGCTTGAAGGGTGTATAGAGCATGTATGGCCGGATACAGTCATATATCTTGATGACAAGGATCCTGTTCTTATTGGCCGTGCATATGGACGTGTTAGTAGGCATTTGCTTCACGAAGAGCTGCTTAAAAAGTGTATCAAGTCGGGTGTTTCATATCTCAACTCCAGAGTGGACAGCATTACGGAAACTGCCACTGGCCATAGCCTTGTAGCCTGTGAACATGATATTTTTGTTCCGTGCAGACTGGCAACAGTTGCATCAGGAGCAGCTTCAGGTAAATTGTTGCAGTACGAGGTTGGTGGGCCAAAGGTGTCTGTCCAAACAGCTTATGGTGTGGAGGTTGAGGTGGAAAACAATCCTTATGATCCAAGTCTTATGGTTTTTATGGACTACAGGGACTACGCAAAGCAAGAAAATTCTTCTTTAGAAGCACAATATCCTACATTTCTTTACGCCATGCCCATGTCTCCGACAAAAGTATTCTTTGAGGAAACTTGTTTAGCTTCAAAAGAAGCTATGCCATTTGATCTGTTAAAGAAAAAACTCATGTCTAGATTAAAGACAATGGGGATCCGAATAGTGAAAACATATGAAGAGGAATGGTCTTATATTCCAGTTGGTGGATCCTTGCCAAACACAGAGCAGAAAAACCTCGCATTTGGTGCAGCTGCCAGCATGGTACATCCAGCCACCGGTTATTCAGTTGTTAGATCTCTGTCTGAAGCTCCAAAATATGCTTCTGTTATTGCAAAAGTTTTGAAGCAAGGACAGCTAAAGGATGGTCTTGCTAGCGGAAGAAATTATGGGAATATCTCAATGCAGGCGTGGAACACTCTTTGGCCACGAGAAAGGAAACGCCAGAGAGCATTTTTTCTCTTTGGGCTTGCACTGATTGTTCAACTGGACATTGAAGGCATTCGAACATTTTTCCGGACTTTCTTCCAATTGCCAGATTGGATGTGGCAAGGATTCCTTGGATCTACTTTATCTTCAGGAGACCTTGCACTTTTTGCATTGTATATGTTCGTCATTGCTCCAAATGACCTAAGAATGTGCCTCGTTAAACATCTCCTTTCTGATCCCACTGGAGCAACCATGATAAGAACATATCTCACAGTAGCTTGA

Protein sequence

MECMGLTARNFAAMAASYTSNLPSTGTRRLRLLCRTESLQFRLRRPSVFVMASAGSESCIAVREGFADDEDYIKGGGSELLFVQMQQNKTMEMQSKLADELPPISVGNGVLDLVVIGCGPAGLALAAESAALGLKVGLIGPDLPFTNNYGVWEDEFKDLGLEGCIEHVWPDTVIYLDDKDPVLIGRAYGRVSRHLLHEELLKKCIKSGVSYLNSRVDSITETATGHSLVACEHDIFVPCRLATVASGAASGKLLQYEVGGPKVSVQTAYGVEVEVENNPYDPSLMVFMDYRDYAKQENSSLEAQYPTFLYAMPMSPTKVFFEETCLASKEAMPFDLLKKKLMSRLKTMGIRIVKTYEEEWSYIPVGGSLPNTEQKNLAFGAAASMVHPATGYSVVRSLSEAPKYASVIAKVLKQGQLKDGLASGRNYGNISMQAWNTLWPRERKRQRAFFLFGLALIVQLDIEGIRTFFRTFFQLPDWMWQGFLGSTLSSGDLALFALYMFVIAPNDLRMCLVKHLLSDPTGATMIRTYLTVA
Homology
[Close]
BLAST of Cucsat.G19732 vs. ExPASy Swiss-Prot
Match: Q38932 (Lycopene epsilon cyclase, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=LUT2 PE=1 SV=2)

HSP 1 Score: 276.6 bits (706), Expect = 2.1e-73
Identity = 138/174 (79.31%), Postives = 152/174 (87.36%), Query Frame = 0 

Query: 14  EWSYIPVGGSLPNTEQKNLAFGAAASMVHPATGYSVVRSLSEAPKYASVIAKVLKQGQLK 73
           EWSYIPVGGSLPNTEQKNLAFGAAASMVHPATGYSVVRSLSEAPKYASVIA++L++   K
Sbjct: 357 EWSYIPVGGSLPNTEQKNLAFGAAASMVHPATGYSVVRSLSEAPKYASVIAEILREETTK 416

Query: 74  DGLASGRNYGNISMQAWNTLWPRERKRQRAFFLFGLALIVQLDIEGIRTFFRTFFQLPDW 133
                 +   NIS QAW+TLWP ERKRQRAFFLFGLALIVQ D EGIR+FFRTFF+LP W
Sbjct: 417 ------QINSNISRQAWDTLWPPERKRQRAFFLFGLALIVQFDTEGIRSFFRTFFRLPKW 476

Query: 134 MWQGFLGSTLSSGDLALFALYMFVIAPNDLRMCLVKHLLSDPTGATMIRTYLTV 188
           MWQGFLGSTL+SGDL LFALYMFVI+PN+LR  L+ HL+SDPTGATMI+TYL V
Sbjct: 477 MWQGFLGSTLTSGDLVLFALYMFVISPNNLRKGLINHLISDPTGATMIKTYLKV 524

[Close]
BLAST of Cucsat.G19732 vs. ExPASy Swiss-Prot
Match: O65837 (Lycopene epsilon cyclase, chloroplastic OS=Solanum lycopersicum OX=4081 GN=CRTL-E-1 PE=2 SV=1)

HSP 1 Score: 274.6 bits (701), Expect = 8.1e-73
Identity = 135/173 (78.03%), Postives = 153/173 (88.44%), Query Frame = 0 

Query: 14  EWSYIPVGGSLPNTEQKNLAFGAAASMVHPATGYSVVRSLSEAPKYASVIAKVLKQGQLK 73
           EWSYIPVGGSLPNTEQK LAFGAAASMVHPATGYSVVRSLSEAPK ASV+A +L+Q   K
Sbjct: 354 EWSYIPVGGSLPNTEQKTLAFGAAASMVHPATGYSVVRSLSEAPKCASVLANILRQHYSK 413

Query: 74  DGLASGRNYGNISMQAWNTLWPRERKRQRAFFLFGLALIVQLDIEGIRTFFRTFFQLPDW 133
           + L S  +  +IS QAWNTLWP+ERKRQR+FFLFGLALI+QLDIEGIR+FFR FF++P W
Sbjct: 414 NMLTSS-SIPSISTQAWNTLWPQERKRQRSFFLFGLALILQLDIEGIRSFFRAFFRVPKW 473

Query: 134 MWQGFLGSTLSSGDLALFALYMFVIAPNDLRMCLVKHLLSDPTGATMIRTYLT 187
           MWQGFLGS+LSS DL LFA YMF+IAPND+R  L++HLLSDPTGAT+IRTYLT
Sbjct: 474 MWQGFLGSSLSSADLMLFAFYMFIIAPNDMRKGLIRHLLSDPTGATLIRTYLT 525

[Close]
BLAST of Cucsat.G19732 vs. ExPASy Swiss-Prot
Match: D9IL24 (Lycopene epsilon cyclase, chloroplastic OS=Oncidium hybrid cultivar OX=141207 GN=LCY-E PE=2 SV=1)

HSP 1 Score: 265.8 bits (678), Expect = 3.8e-70
Identity = 132/175 (75.43%), Postives = 147/175 (84.00%), Query Frame = 0 

Query: 14  EWSYIPVGGSLPNTEQKNLAFGAAASMVHPATGYSVVRSLSEAPKYASVIAKVLKQ-GQL 73
           EWSYIPVGGSLPNTEQKNLAFG AASMVHPATGYS+VRSLSEAP+YASVI  +LK+    
Sbjct: 345 EWSYIPVGGSLPNTEQKNLAFGVAASMVHPATGYSIVRSLSEAPQYASVITNILKRNSNS 404

Query: 74  KDGLASGRNYGNISMQAWNTLWPRERKRQRAFFLFGLALIVQLDIEGIRTFFRTFFQLPD 133
                 G +Y N S+ AW TLWP+E KRQRAFFLFGLALI+QLDI+GIR FF+TFF+LPD
Sbjct: 405 SQNNVIGSSY-NPSVLAWRTLWPQEGKRQRAFFLFGLALILQLDIDGIRIFFQTFFRLPD 464

Query: 134 WMWQGFLGSTLSSGDLALFALYMFVIAPNDLRMCLVKHLLSDPTGATMIRTYLTV 188
           WMWQGFLGSTLSS  L  FA YMF IAPN LR+CL+KHLLSDPTG+TMIR YLT+
Sbjct: 465 WMWQGFLGSTLSSAGLIWFAFYMFAIAPNSLRICLIKHLLSDPTGSTMIREYLTL 518

[Close]
BLAST of Cucsat.G19732 vs. ExPASy Swiss-Prot
Match: Q40424 (Lycopene beta cyclase, chloroplastic/chromoplastic OS=Narcissus pseudonarcissus OX=39639 GN=LCY1 PE=2 SV=1)

HSP 1 Score: 116.7 bits (291), Expect = 2.8e-25
Identity = 62/148 (41.89%), Postives = 86/148 (58.11%), Query Frame = 0 

Query: 18  IPVGGSLPNTEQKNLAFGAAASMVHPATGYSVVRSLSEAPKYASVIAKVLKQGQLKDGLA 77
           IP+GG LP   Q+ +  G  A MVHP+TGY V R+L+ AP    ++A  + Q  + D   
Sbjct: 341 IPMGGPLPVIPQRVVGIGGTAGMVHPSTGYMVARTLAAAP----IVANSIVQYLVSD--- 400

Query: 78  SGRNYGNISMQAWNTLWPRERKRQRAFFLFGLALIVQLDIEGIRTFFRTFFQLPDWMWQG 137
           SG +  ++S   W  LWP ER+RQR FF FG+ ++++LD+EG R FF  FF L    W G
Sbjct: 401 SGLSGNDLSADVWKDLWPIERRRQREFFCFGMDILLKLDLEGTRRFFDAFFDLEPRYWHG 460

Query: 138 FLGSTLSSGDLALFALYMFVIAPNDLRM 166
           FL S L   +L  F L +F  A N  ++
Sbjct: 461 FLSSRLFLPELVPFGLSLFSHASNTCKL 481

[Close]
BLAST of Cucsat.G19732 vs. ExPASy Swiss-Prot
Match: Q38933 (Lycopene beta cyclase, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=LCY1 PE=1 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 1.8e-24
Identity = 61/148 (41.22%), Postives = 83/148 (56.08%), Query Frame = 0 

Query: 18  IPVGGSLPNTEQKNLAFGAAASMVHPATGYSVVRSLSEAPKYASVIAKVLKQGQLKDGLA 77
           IP+GG LP   Q+ +  G  A MVHP+TGY V R+L+ AP  A+ I + L  G       
Sbjct: 337 IPMGGPLPVLPQRVVGIGGTAGMVHPSTGYMVARTLAAAPIVANAIVRYL--GSPSSNSL 396

Query: 78  SGRNYGNISMQAWNTLWPRERKRQRAFFLFGLALIVQLDIEGIRTFFRTFFQLPDWMWQG 137
            G     +S + W  LWP ER+RQR FF FG+ ++++LD++  R FF  FF L    W G
Sbjct: 397 RG---DQLSAEVWRDLWPIERRRQREFFCFGMDILLKLDLDATRRFFDAFFDLQPHYWHG 456

Query: 138 FLGSTLSSGDLALFALYMFVIAPNDLRM 166
           FL S L   +L +F L +F  A N  R+
Sbjct: 457 FLSSRLFLPELLVFGLSLFSHASNTSRL 479

[Close]
BLAST of Cucsat.G19732 vs. NCBI nr
Match: XP_004141172.1 (lycopene epsilon cyclase, chloroplastic [Cucumis sativus] >KGN60527.1 hypothetical protein Csa_019286 [Cucumis sativus])

HSP 1 Score: 355 bits (910), Expect = 4.71e-118
Identity = 175/175 (100.00%), Postives = 175/175 (100.00%), Query Frame = 0 

Query: 14  EWSYIPVGGSLPNTEQKNLAFGAAASMVHPATGYSVVRSLSEAPKYASVIAKVLKQGQLK 73
           EWSYIPVGGSLPNTEQKNLAFGAAASMVHPATGYSVVRSLSEAPKYASVIAKVLKQGQLK
Sbjct: 359 EWSYIPVGGSLPNTEQKNLAFGAAASMVHPATGYSVVRSLSEAPKYASVIAKVLKQGQLK 418

Query: 74  DGLASGRNYGNISMQAWNTLWPRERKRQRAFFLFGLALIVQLDIEGIRTFFRTFFQLPDW 133
           DGLASGRNYGNISMQAWNTLWPRERKRQRAFFLFGLALIVQLDIEGIRTFFRTFFQLPDW
Sbjct: 419 DGLASGRNYGNISMQAWNTLWPRERKRQRAFFLFGLALIVQLDIEGIRTFFRTFFQLPDW 478

Query: 134 MWQGFLGSTLSSGDLALFALYMFVIAPNDLRMCLVKHLLSDPTGATMIRTYLTVA 188
           MWQGFLGSTLSSGDLALFALYMFVIAPNDLRMCLVKHLLSDPTGATMIRTYLTVA
Sbjct: 479 MWQGFLGSTLSSGDLALFALYMFVIAPNDLRMCLVKHLLSDPTGATMIRTYLTVA 533

[Close]
BLAST of Cucsat.G19732 vs. NCBI nr
Match: AGN48015.1 (lycopene cyclase [Cucumis melo])

HSP 1 Score: 349 bits (896), Expect = 1.45e-117
Identity = 174/188 (92.55%), Postives = 181/188 (96.28%), Query Frame = 0 

Query: 1   VFLRIMHGMKLSPEWSYIPVGGSLPNTEQKNLAFGAAASMVHPATGYSVVRSLSEAPKYA 60
           V ++  +G+++  EWSYIPVGGSLPNTEQKNLAFGAAASMVHPATGYSVVRSLSEAPKYA
Sbjct: 226 VSVQTAYGVEVE-EWSYIPVGGSLPNTEQKNLAFGAAASMVHPATGYSVVRSLSEAPKYA 285

Query: 61  SVIAKVLKQGQLKDGLASGRNYGNISMQAWNTLWPRERKRQRAFFLFGLALIVQLDIEGI 120
           SVIAKVLKQGQLKDGLASGRNYGNISM AWNTLWPRERKRQRAFFLFGLALIVQLDIEGI
Sbjct: 286 SVIAKVLKQGQLKDGLASGRNYGNISMLAWNTLWPRERKRQRAFFLFGLALIVQLDIEGI 345

Query: 121 RTFFRTFFQLPDWMWQGFLGSTLSSGDLALFALYMFVIAPNDLRMCLVKHLLSDPTGATM 180
           RTFFRTFFQLPDWMWQGFLGSTLSS DLALFALYMFVIAPNDLRMCLVKHLLSDPTGATM
Sbjct: 346 RTFFRTFFQLPDWMWQGFLGSTLSSADLALFALYMFVIAPNDLRMCLVKHLLSDPTGATM 405

Query: 181 IRTYLTVA 188
           IRTYLT+A
Sbjct: 406 IRTYLTLA 412

[Close]
BLAST of Cucsat.G19732 vs. NCBI nr
Match: AEN94903.1 (lycopene epsilon cyclase, partial [Cucurbita moschata])

HSP 1 Score: 342 bits (876), Expect = 1.09e-115
Identity = 166/175 (94.86%), Postives = 173/175 (98.86%), Query Frame = 0 

Query: 14  EWSYIPVGGSLPNTEQKNLAFGAAASMVHPATGYSVVRSLSEAPKYASVIAKVLKQGQLK 73
           EWSYIPVGGSLPNTEQKNLAFGAAASMVHPATGYSVVRSLSEAPKYASVIA+VLK+GQLK
Sbjct: 157 EWSYIPVGGSLPNTEQKNLAFGAAASMVHPATGYSVVRSLSEAPKYASVIARVLKRGQLK 216

Query: 74  DGLASGRNYGNISMQAWNTLWPRERKRQRAFFLFGLALIVQLDIEGIRTFFRTFFQLPDW 133
           DGLA+GR YGNISMQAWNTLWP+ERKRQRAFFLFGLALIVQLDIEGIRTFFRTFFQLPDW
Sbjct: 217 DGLANGRTYGNISMQAWNTLWPQERKRQRAFFLFGLALIVQLDIEGIRTFFRTFFQLPDW 276

Query: 134 MWQGFLGSTLSSGDLALFALYMFVIAPNDLRMCLVKHLLSDPTGATMIRTYLTVA 188
           MWQGFLGSTLSS DLALFALYMFV+APNDLRMCLVKHL+SDPTGATMIRTYLTV+
Sbjct: 277 MWQGFLGSTLSSADLALFALYMFVLAPNDLRMCLVKHLVSDPTGATMIRTYLTVS 331

[Close]
BLAST of Cucsat.G19732 vs. NCBI nr
Match: KAA0061483.1 (lycopene epsilon cyclase [Cucumis melo var. makuwa])

HSP 1 Score: 348 bits (894), Expect = 1.23e-115
Identity = 172/175 (98.29%), Postives = 173/175 (98.86%), Query Frame = 0 

Query: 14  EWSYIPVGGSLPNTEQKNLAFGAAASMVHPATGYSVVRSLSEAPKYASVIAKVLKQGQLK 73
           EWSYIPVGGSLPNTEQKNLAFGAAASMVHPATGYSVVRSLSEAPKYASVIAKVLKQGQLK
Sbjct: 359 EWSYIPVGGSLPNTEQKNLAFGAAASMVHPATGYSVVRSLSEAPKYASVIAKVLKQGQLK 418

Query: 74  DGLASGRNYGNISMQAWNTLWPRERKRQRAFFLFGLALIVQLDIEGIRTFFRTFFQLPDW 133
           DGLASGRNYGNISM AWNTLWPRERKRQRAFFLFGLALIVQLDIEGIRTFFRTFFQLPDW
Sbjct: 419 DGLASGRNYGNISMLAWNTLWPRERKRQRAFFLFGLALIVQLDIEGIRTFFRTFFQLPDW 478

Query: 134 MWQGFLGSTLSSGDLALFALYMFVIAPNDLRMCLVKHLLSDPTGATMIRTYLTVA 188
           MWQGFLGSTLSS DLALFALYMFVIAPNDLRMCLVKHLLSDPTGATMIRTYLT+A
Sbjct: 479 MWQGFLGSTLSSADLALFALYMFVIAPNDLRMCLVKHLLSDPTGATMIRTYLTLA 533

[Close]
BLAST of Cucsat.G19732 vs. NCBI nr
Match: NP_001315403.1 (lycopene epsilon cyclase, chloroplastic [Cucumis melo] >AID51466.1 lycopene epsilon cyclase [Cucumis melo var. makuwa] >TYK10791.1 lycopene epsilon cyclase [Cucumis melo var. makuwa])

HSP 1 Score: 348 bits (894), Expect = 1.23e-115
Identity = 172/175 (98.29%), Postives = 173/175 (98.86%), Query Frame = 0 

Query: 14  EWSYIPVGGSLPNTEQKNLAFGAAASMVHPATGYSVVRSLSEAPKYASVIAKVLKQGQLK 73
           EWSYIPVGGSLPNTEQKNLAFGAAASMVHPATGYSVVRSLSEAPKYASVIAKVLKQGQLK
Sbjct: 359 EWSYIPVGGSLPNTEQKNLAFGAAASMVHPATGYSVVRSLSEAPKYASVIAKVLKQGQLK 418

Query: 74  DGLASGRNYGNISMQAWNTLWPRERKRQRAFFLFGLALIVQLDIEGIRTFFRTFFQLPDW 133
           DGLASGRNYGNISM AWNTLWPRERKRQRAFFLFGLALIVQLDIEGIRTFFRTFFQLPDW
Sbjct: 419 DGLASGRNYGNISMLAWNTLWPRERKRQRAFFLFGLALIVQLDIEGIRTFFRTFFQLPDW 478

Query: 134 MWQGFLGSTLSSGDLALFALYMFVIAPNDLRMCLVKHLLSDPTGATMIRTYLTVA 188
           MWQGFLGSTLSS DLALFALYMFVIAPNDLRMCLVKHLLSDPTGATMIRTYLT+A
Sbjct: 479 MWQGFLGSTLSSADLALFALYMFVIAPNDLRMCLVKHLLSDPTGATMIRTYLTLA 533

[Close]
BLAST of Cucsat.G19732 vs. ExPASy TrEMBL
Match: A0A0A0LIM3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G000360 PE=3 SV=1)

HSP 1 Score: 355 bits (910), Expect = 2.28e-118
Identity = 175/175 (100.00%), Postives = 175/175 (100.00%), Query Frame = 0 

Query: 14  EWSYIPVGGSLPNTEQKNLAFGAAASMVHPATGYSVVRSLSEAPKYASVIAKVLKQGQLK 73
           EWSYIPVGGSLPNTEQKNLAFGAAASMVHPATGYSVVRSLSEAPKYASVIAKVLKQGQLK
Sbjct: 359 EWSYIPVGGSLPNTEQKNLAFGAAASMVHPATGYSVVRSLSEAPKYASVIAKVLKQGQLK 418

Query: 74  DGLASGRNYGNISMQAWNTLWPRERKRQRAFFLFGLALIVQLDIEGIRTFFRTFFQLPDW 133
           DGLASGRNYGNISMQAWNTLWPRERKRQRAFFLFGLALIVQLDIEGIRTFFRTFFQLPDW
Sbjct: 419 DGLASGRNYGNISMQAWNTLWPRERKRQRAFFLFGLALIVQLDIEGIRTFFRTFFQLPDW 478

Query: 134 MWQGFLGSTLSSGDLALFALYMFVIAPNDLRMCLVKHLLSDPTGATMIRTYLTVA 188
           MWQGFLGSTLSSGDLALFALYMFVIAPNDLRMCLVKHLLSDPTGATMIRTYLTVA
Sbjct: 479 MWQGFLGSTLSSGDLALFALYMFVIAPNDLRMCLVKHLLSDPTGATMIRTYLTVA 533

[Close]
BLAST of Cucsat.G19732 vs. ExPASy TrEMBL
Match: T1RR84 (Lycopene cyclase OS=Cucumis melo OX=3656 GN=LECY PE=4 SV=1)

HSP 1 Score: 349 bits (896), Expect = 7.01e-118
Identity = 174/188 (92.55%), Postives = 181/188 (96.28%), Query Frame = 0 

Query: 1   VFLRIMHGMKLSPEWSYIPVGGSLPNTEQKNLAFGAAASMVHPATGYSVVRSLSEAPKYA 60
           V ++  +G+++  EWSYIPVGGSLPNTEQKNLAFGAAASMVHPATGYSVVRSLSEAPKYA
Sbjct: 226 VSVQTAYGVEVE-EWSYIPVGGSLPNTEQKNLAFGAAASMVHPATGYSVVRSLSEAPKYA 285

Query: 61  SVIAKVLKQGQLKDGLASGRNYGNISMQAWNTLWPRERKRQRAFFLFGLALIVQLDIEGI 120
           SVIAKVLKQGQLKDGLASGRNYGNISM AWNTLWPRERKRQRAFFLFGLALIVQLDIEGI
Sbjct: 286 SVIAKVLKQGQLKDGLASGRNYGNISMLAWNTLWPRERKRQRAFFLFGLALIVQLDIEGI 345

Query: 121 RTFFRTFFQLPDWMWQGFLGSTLSSGDLALFALYMFVIAPNDLRMCLVKHLLSDPTGATM 180
           RTFFRTFFQLPDWMWQGFLGSTLSS DLALFALYMFVIAPNDLRMCLVKHLLSDPTGATM
Sbjct: 346 RTFFRTFFQLPDWMWQGFLGSTLSSADLALFALYMFVIAPNDLRMCLVKHLLSDPTGATM 405

Query: 181 IRTYLTVA 188
           IRTYLT+A
Sbjct: 406 IRTYLTLA 412

[Close]
BLAST of Cucsat.G19732 vs. ExPASy TrEMBL
Match: G3LUM7 (Lycopene epsilon cyclase (Fragment) OS=Cucurbita moschata OX=3662 GN=LCYE PE=2 SV=1)

HSP 1 Score: 342 bits (876), Expect = 5.30e-116
Identity = 166/175 (94.86%), Postives = 173/175 (98.86%), Query Frame = 0 

Query: 14  EWSYIPVGGSLPNTEQKNLAFGAAASMVHPATGYSVVRSLSEAPKYASVIAKVLKQGQLK 73
           EWSYIPVGGSLPNTEQKNLAFGAAASMVHPATGYSVVRSLSEAPKYASVIA+VLK+GQLK
Sbjct: 157 EWSYIPVGGSLPNTEQKNLAFGAAASMVHPATGYSVVRSLSEAPKYASVIARVLKRGQLK 216

Query: 74  DGLASGRNYGNISMQAWNTLWPRERKRQRAFFLFGLALIVQLDIEGIRTFFRTFFQLPDW 133
           DGLA+GR YGNISMQAWNTLWP+ERKRQRAFFLFGLALIVQLDIEGIRTFFRTFFQLPDW
Sbjct: 217 DGLANGRTYGNISMQAWNTLWPQERKRQRAFFLFGLALIVQLDIEGIRTFFRTFFQLPDW 276

Query: 134 MWQGFLGSTLSSGDLALFALYMFVIAPNDLRMCLVKHLLSDPTGATMIRTYLTVA 188
           MWQGFLGSTLSS DLALFALYMFV+APNDLRMCLVKHL+SDPTGATMIRTYLTV+
Sbjct: 277 MWQGFLGSTLSSADLALFALYMFVLAPNDLRMCLVKHLVSDPTGATMIRTYLTVS 331

[Close]
BLAST of Cucsat.G19732 vs. ExPASy TrEMBL
Match: A0A088CHT9 (Lycopene epsilon cyclase OS=Cucumis melo var. makuwa OX=1194695 GN=LCYE PE=2 SV=1)

HSP 1 Score: 348 bits (894), Expect = 5.96e-116
Identity = 172/175 (98.29%), Postives = 173/175 (98.86%), Query Frame = 0 

Query: 14  EWSYIPVGGSLPNTEQKNLAFGAAASMVHPATGYSVVRSLSEAPKYASVIAKVLKQGQLK 73
           EWSYIPVGGSLPNTEQKNLAFGAAASMVHPATGYSVVRSLSEAPKYASVIAKVLKQGQLK
Sbjct: 359 EWSYIPVGGSLPNTEQKNLAFGAAASMVHPATGYSVVRSLSEAPKYASVIAKVLKQGQLK 418

Query: 74  DGLASGRNYGNISMQAWNTLWPRERKRQRAFFLFGLALIVQLDIEGIRTFFRTFFQLPDW 133
           DGLASGRNYGNISM AWNTLWPRERKRQRAFFLFGLALIVQLDIEGIRTFFRTFFQLPDW
Sbjct: 419 DGLASGRNYGNISMLAWNTLWPRERKRQRAFFLFGLALIVQLDIEGIRTFFRTFFQLPDW 478

Query: 134 MWQGFLGSTLSSGDLALFALYMFVIAPNDLRMCLVKHLLSDPTGATMIRTYLTVA 188
           MWQGFLGSTLSS DLALFALYMFVIAPNDLRMCLVKHLLSDPTGATMIRTYLT+A
Sbjct: 479 MWQGFLGSTLSSADLALFALYMFVIAPNDLRMCLVKHLLSDPTGATMIRTYLTLA 533

[Close]
BLAST of Cucsat.G19732 vs. ExPASy TrEMBL
Match: A0A5A7UZW2 (Lycopene epsilon cyclase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold41G00430 PE=3 SV=1)

HSP 1 Score: 348 bits (894), Expect = 5.96e-116
Identity = 172/175 (98.29%), Postives = 173/175 (98.86%), Query Frame = 0 

Query: 14  EWSYIPVGGSLPNTEQKNLAFGAAASMVHPATGYSVVRSLSEAPKYASVIAKVLKQGQLK 73
           EWSYIPVGGSLPNTEQKNLAFGAAASMVHPATGYSVVRSLSEAPKYASVIAKVLKQGQLK
Sbjct: 359 EWSYIPVGGSLPNTEQKNLAFGAAASMVHPATGYSVVRSLSEAPKYASVIAKVLKQGQLK 418

Query: 74  DGLASGRNYGNISMQAWNTLWPRERKRQRAFFLFGLALIVQLDIEGIRTFFRTFFQLPDW 133
           DGLASGRNYGNISM AWNTLWPRERKRQRAFFLFGLALIVQLDIEGIRTFFRTFFQLPDW
Sbjct: 419 DGLASGRNYGNISMLAWNTLWPRERKRQRAFFLFGLALIVQLDIEGIRTFFRTFFQLPDW 478

Query: 134 MWQGFLGSTLSSGDLALFALYMFVIAPNDLRMCLVKHLLSDPTGATMIRTYLTVA 188
           MWQGFLGSTLSS DLALFALYMFVIAPNDLRMCLVKHLLSDPTGATMIRTYLT+A
Sbjct: 479 MWQGFLGSTLSSADLALFALYMFVIAPNDLRMCLVKHLLSDPTGATMIRTYLTLA 533

The following BLAST results are available for this feature:
BLAST of Cucsat.G19732 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q389322.1e-7379.31Lycopene epsilon cyclase, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=LUT2 ... [more]
O658378.1e-7378.03Lycopene epsilon cyclase, chloroplastic OS=Solanum lycopersicum OX=4081 GN=CRTL-... [more]
D9IL243.8e-7075.43Lycopene epsilon cyclase, chloroplastic OS=Oncidium hybrid cultivar OX=141207 GN... [more]
Q404242.8e-2541.89Lycopene beta cyclase, chloroplastic/chromoplastic OS=Narcissus pseudonarcissus ... [more]
Q389331.8e-2441.22Lycopene beta cyclase, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=LCY1 PE=... [more]
BLAST of Cucsat.G19732 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_004141172.14.71e-118100.00lycopene epsilon cyclase, chloroplastic [Cucumis sativus] >KGN60527.1 hypothetic... [more]
AGN48015.11.45e-11792.55lycopene cyclase [Cucumis melo][more]
AEN94903.11.09e-11594.86lycopene epsilon cyclase, partial [Cucurbita moschata][more]
KAA0061483.11.23e-11598.29lycopene epsilon cyclase [Cucumis melo var. makuwa][more]
NP_001315403.11.23e-11598.29lycopene epsilon cyclase, chloroplastic [Cucumis melo] >AID51466.1 lycopene epsi... [more]
BLAST of Cucsat.G19732 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LIM32.28e-118100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G000360 PE=3 SV=1[more]
T1RR847.01e-11892.55Lycopene cyclase OS=Cucumis melo OX=3656 GN=LECY PE=4 SV=1[more]
G3LUM75.30e-11694.86Lycopene epsilon cyclase (Fragment) OS=Cucurbita moschata OX=3662 GN=LCYE PE=2 S... [more]
A0A088CHT95.96e-11698.29Lycopene epsilon cyclase OS=Cucumis melo var. makuwa OX=1194695 GN=LCYE PE=2 SV=... [more]
A0A5A7UZW25.96e-11698.29Lycopene epsilon cyclase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffol... [more]
InterPro
Analysis Name: InterPro Annotations of Cucumber (B10) v3
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR010108Lycopene cyclase, beta/epsilonTIGRFAMTIGR01790TIGR01790coord: 1..227
e-value: 5.1E-84
score: 280.6
NoneNo IPR availablePFAMPF05834Lycopene_cyclcoord: 1..225
e-value: 1.8E-86
score: 290.6
NoneNo IPR availablePANTHERPTHR39757FAMILY NOT NAMEDcoord: 1..247

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cucsat.G19732.T1Cucsat.G19732.T1mRNA
Cucsat.G19732.T2Cucsat.G19732.T2mRNA
Cucsat.G19732.T3Cucsat.G19732.T3mRNA
Cucsat.G19732.T4Cucsat.G19732.T4mRNA
Cucsat.G19732.T5Cucsat.G19732.T5mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0016120 carotene biosynthetic process
biological_process GO:0016117 carotenoid biosynthetic process
biological_process GO:0006744 ubiquinone biosynthetic process
biological_process GO:0016123 xanthophyll biosynthetic process
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen