Cucsat.G18709.T32 (mRNA) Cucumber (B10) v3

Overview
NameCucsat.G18709.T32
TypemRNA
OrganismCucumis sativus L. var. sativus cv B10 (Cucumber (B10) v3)
DescriptionProtein CHROMATIN REMODELING
Locationctg3408: 327279 .. 334644 (+)
RNA-Seq ExpressionCucsat.G18709.T32
SyntenyCucsat.G18709.T32
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
GGACTTTTTTTTGAGTTCTTTCTTTATGACAGTACGCAGGTAGCAGAAAGACAGACGATAGTTGACACTTTCAATAATGACACGTCTATATTTGCATGCTTGCTTTCTACTAGAGCAGGGGGACAGGGGTTGAACTTAACTGGGGCCGACACTGTTGTCATTCACGACATGGATTTCAATCCACAGATTGACCGCCAAGCAGAAGATCGTTGTCATCGAATTGGCCAAACCAAACCTGTCACTATATACAGGTATTCCCTACACCTTTCCATCAAATTCTGGTTTACTTTTCATTGGTACAAAATTTGGATTCTCGGTGTTAAAGGAAATTATGGCTTATTGGATTTATTCTTATTTAATATTTTCCATATTTGTATTTTACCTTTATTAGTATTTTTGTCTGTATTTATTCACCAATGCAATAGATTATTATGTAACATTGATTTATTCAATATATTATATACAATTATCATGGTAACAGAGCTCTAGGATTTATTTTATTGAAATTTAGCTGCCGTTGCCGCCACTAGCCTTGTTCGACCTCTACCTCTGTCGTCTTGACTAGCAATCGACGGAGGTAATCGACAAATGTAATCGATGGAGGTAGACCCACATGTAGATTTGCCGCTCTCGAATGCCAACCCTTTTGCCCAACTCGTCGTTCCGTTTAAACCAGCACTCTGGTCCAGTGTTGTTTTCCATCTTTGGTTCATCCTTGAACCATTTGCTGTCCGTTTTTACATCTGCTCACCATTACTTAGATCCATTCATGCCGTCCAGATCTGTCTCCATGGGTTTTTCCAATTTGCTGTTCAGTTTGCTCCAGATCTGTCATGTTGAGTTTACGCCTTTGTAGGTCATGTGATTTTGTGGGTTCATTCTCTTTGTGGTCGTACAACTATGTCCAGATTTGGTTTCCGTTAAAGTCCTTATCGATGGAAAATTCATGCTTTTCTCAACCAGTTTGGTGTGGTTTAATAGCTCGATTGGTTCAATTTGGTTCAGTCTTGGTTCCCCGGTCTGGTCCAATTTTGGTTGGTTTAGCAGTTTGGTTCAGTTAGCCCAATTGTTATGTTCTATTTCCTGTTTTTGTTTCGTTTTCAAATGAGTTGTTCATGGGGTTTGTTATAGATCTCTCAATGAGAATCTTTGTTCCTGTTCAGAAGTTCTTGTTCTATATTAGGATTTATGAGTTGTAATGTGTTTATATTAAAATTATGTATAGTTGTCCTTTATTGAAATTTTACATTCTCTAGATTAAGGTTCCTTAGTTACGTATATTTATATGTATCTTCAACTTGATTAAATAATAAGACAATTATATTCTCCAAAAGTGGAGAGTACATGGTATCAAAGCCCGTTTAGGGTTTTGAATACCTGTTCATTTGTTTCACGACTACCTTCACACAAGGTTAGGGTTAGGGTTTAAGTTTGGCTCATAAAGTTTGAGTGGCTGTTTGTCTACACCACCCACTGAGCGTCGCTGCTGTTCACCTGAGTCTGAGTTCGTTGTTTGTTGGAAACAGTCATGTGTGAGGATCACATCCTGTCAGATGGAAATTGTTATGTCTCCATGCGCCGGTACGTGTAAGTGCGTGGGAGTTCCATTTTTTTTTTTCGTCGGTTGGTTTCGTGATGATTTGCGTTCTTTGGCTGGTTTGTGCATTTGGTATTGTTAGAATTAGTGGGTTTGTTGTATGTTGAAAGGTCAATGGTAGTTAGAATTATTCTTTTCTTTTTAATTAGGCTCTTGTCATCTATTGAGTTTCCCCTCTTGTATCATTTGTTGAATAAGAAAAATGATAACAACCCCCTACTGTGGGTTTTTTTTCCCTATACTAGGGTTTCCATGTAAGTTTGTGTGTTGTTCTTTGTCGTTATTTTTAATATGGTATTAGAGCGGAATAACGACGAAATCCTAGACACCAATATCGATAAAACCCAAACAGAGGAGAACCTCACTGTTGTTGTCGAGATCAACGCCACCGCCACGGACGATCTGTTCTATCGTCTTCAGATAACGGCTATCGAAGCAACCCTTCAATCGCACATGCCTTCAATTGCTTTCACAGCCCTTTACCAACCACAACCATCAGTTGTCCACGCACCATCACTTCCTATCTTCACGCCATGGAACAGTCTTGCTTAGCCGCAGCTGCACCCAACCCTACCTCAGTTGCGGTTTGTTAGTCTTGTCCAGTCAACTTTTGAGGTTGGTGAATCCTCGACTTAGTCCAAACCTCATGTGCAGGATTTCTATCAGGTTACCACCCGACAACAACTAAACAAGCTTCAACAGTAAATCACAACATTTAAGGCAATGTTAGGGGCTCTTACTAATACTTCCAGTCGTGGTCTTCATACAACCTTACTGATGTATTATGAGAATCCAGTAACTTTGTTCCCCATTTTGTTCTCTACTTATGTGTTTAATTCGGTGGTACAATTTAAGAAGTCTTTACATGGGAGAAGTTGAATGGCCAAAGGCCCAAAACTATTTCTTGTGGTCCCCATTTGTTAAAATGATCATGGAGGCTGCTACAAATTTGTCTTTTTAACGAGAGAGATATCATGTCCTCTACCAGGAGATCCCTAGGAACGCTACTGGAAATGGGAGGATTCTCTTATTCAGGCCATGTTGATCAACACTATGGAGCCACAGATTGGCAAACCCTTATTGTATGTTACAACGGCCAAGGATATATGGGGCACCTCAAAAGCTCTATTTGAAACGCCAAAATACCTCTTGCCTCTACACACGGCAAAAGCAAGTCCATGCATGCAAGCATGGGACTATGGATGTAACATTTTACTTTAATAAAGTCTCTTATTTCCTGATGGATCTTTAAAGAGATTGTTTGGAACTGTCCCAGTCATGGCATACAACACTAGGGACTTGAAGAGGTTGACAGAGTATATGACTTCCTTGCTGGTCTCAACTTGAAGTTTGATGTAGTTCATAGTTGTATACTAGGTCGGAGACCTATTTCCTCCTTAATGGAGGTTTGTTCTGAAGTCTGCCTTGAGGAGGATCGTATGAGCGCCATGAACATTCTCACCACTCTTGCCATTGATTTTGTTGCCTTCAGTGGGAGATTCTTTATTCATGACAAGGAGAAGCACAATGAGAAACTGGTTCCCGATCTATGAGCATTGCAAGAAACAGTGGGACACTAAATAACAATGTTGGAAATCATGTGGTCATCCTCTAAGAGGCAAGGAATGTCCTCCGAACGAAAAATAGAACGCCCTCCATTTCTCATCCCATCCATTTCTTTGCCCCATGTATTGCATTTGCCTCGGTTGTCCTTTAACTTAATTTCTATTAGCCAGCTTACCCGTGATCTTAATTGTTTTCTCGTTTTTTTCCTAGTTATTACTTGTTTCAGGATTGTATGACGAAGAAGATTATTGGTAGAGGACACAAACGGGGGCCTTTACATTTTTTACCAACAAATATTTGTAGCTTGCTTTGGAGTTACATTCCCGTTTGAAGCTTATTGTCGTTTGGGGCATCCATCTTTGTTCATGTTGAAGAAATTTTGTCAAGAATTCTATTCCTTGTCATATTTGACTTGTGACTTGTGTCAATTTGCTAAATTTCATCGTCTTAGTTCTAGACTTAGAGTCTCTAAACGAGTTTGTGCTCCTTTTGAGTTAATTCATTTCAATATATGGGGTTTTGTCCAGTTTGTGTCTCAAACAAGTTTTTGTTATTTTGTTACTGTGGTTGATGATTACACTCATGTAACTTGGCTATATTTAATGAAAAGTTGTTTAGAGTTGTCTCATTTTTGTGTTTTTCATGTTGAAATATGAACTCAATTTAATGTCTTGTCAAATCCTCGCACAAATGAATATTTCTCTCATGTACTTGGCTCTTACGTGATCATAGCATCATTTGGCAATCTCTTGTGTAGACAATCCATCCCAAAATGGAGTTATAGAAAGAAGGAACAGGCACTTACTTGAAACAACTTGAGCCTTCTCTGTTTAGATGCATGTTTCGAAGCTCTTTTGAGCTAATGCTGTTTTCACTGCTTACTTCCTGATTAATCGAATTTTTCCTCTATCCTCAGTGGTGAGATTCCTCATCGTGTCCTCTTTCGTACCAAATCTTTGTTTCTATAGTCCTTAAGATCTTTGGTTGTGTCTGTTTTGCTCAAGGTGTTCGTCCTCATTGTACTGAATTAGACCTAAAGTCTTTGAAATTAATATTCTTAGACTATTTGCATGTTCAAAAGAGTAATTGTTGTTTTTGTCCCACTTTAAACAGGTATCTTGTATCTCTTGATGTTCAATTTTTTGAAACTTTGCCCTTTTGTCAACCGTTGTTGATTTCGAGTAAGGGAGAGAGTGGTGATCTTTTTATTTGTTAGATACTTCTCCTACATCATCCCTCTCCTACACCTTCCTTTGATTCTCTTCTTTCTGGCCCACCTGTTTTTTGAATCTACTCCAGGCACCTTCCACAACAGCTTTCAGACCCATGTCCTACACCACTAACTTCTTTGCTATCTGATCTAGGACCAAGTGATGATCTTCCCGTTACCCTTTGTAGAGGTAAATGCACTGTGCTTACCTTATTTCTTCGTTTGTTTCATATACCCAGTTGTCTTTGTAATCTAGAATTCAGAGAGTATATTTCTTATTCATATAGAGTTAGAGAAAAGTTACATATATATATAGAGAGAGAGAACAAATAAACCCTTCCCAATATGTATAATTATGATAAAGGACATATATTATAAATATATATCATAACAATCTTCACCCACATATTCCTTTATTACATTCGTTGATTCGACCTCCATCCTTAACTCTGTTCATGACGCTTTATCTTATTTTGGGTCACATAGTGCAATGATCGAGGAGATGACTAATCTAAATGATAATGGTACTTGGGATCTGGTTTTGCATCTAGTGGGAAAGATATCTATTGGGTGTAAATGAGTGTTTGCTATAAAGGTCAACCTTGTATAAACAATGGCTTGGTTGAAAGTTGGTCTTGTTGCTAGAAGTCATCTCCAAGTCTAAGGGATTGATTATTTTGATACATTTTCCTGTTGGCAAGTTAATTTCCATTCGACTATTTCTTTCCATGGCGGCTGCTCAAAGTTGCTTTCACATCAACTCGACATTAAGAATTCTTTTCTTAATGGTGATATTCAGGGAGAAGTTTATATGGAGCAACCACCTAGGTTTGTTGCTTAAAGAGAGTGAAAAGGTGTGTTGCCTTCTGAAGTCTATGTATGGACTGAAACAAAGTCCTCGTGCATGGTTTGAAAAGTTTAATCAAGCACTCAAATGTTTTGGTATGAAGAAAAGTATGTTTGATCGTTCTGTATTCTACTGATGATTTGACAATGGTGTAACTTTGCTTGTTGTATTTGTTGATGATATCGTTATCATGGGAAATGATATGTCAAGTATATCATCTCTCAAGATTTTCTTCCATGGCCAATTTCATACCAAAGATTTGAGGCGATTGAAGTATTTCTTGAGTATTGAAGTAATGAGAAGCAAGAAAGGTATTTCTGTCCTAACGAAAATATATATTTGATTTGTTGTCTGGGCAGGTAAATTAGGAGTCAAAGCATGTAGTATTCTAATGATACCAAATTTGTAACTTGTTAAGCAAGGAGAATTGTTTAAAGTTCTTGAGAGATATAGAAAATTCGTTGGAAAGTTGAATTATTTAAAAGTGTCACGACCTGATATGTTTATTTTGTGGGTATAGTGAATCAATTTATGTCTCCATCGATTGTGGATCATTGCGTTGCATTAGAACAAATCCTATGTTATCTAAAAGCTGCACTTGGACGTGAGATTTTATATAAAGATCATGGTCATACAAGGGTTAAATGTTTTTCAGATGCTGATTGGGTTGGATCTATAGAGGATTGGAGATCGACCTCTGGATAGTGTGTTTCAGTTGGAGGAAACTTGGTGTTGTGGAAAAGTAAGAAATAAAATGTAGTTTCACGTTCGAGTGTTGAGTCTGAATATGGAGCTAAAAAACAATTGGGTGAAAGTGTGGATACAACTTTTATTTGAGATCGGCTTCAGTGTTAATGTGCCAGGTAACTATGGTGTAATAATCAAACTACTCTTCACATTGCATCCAAACCAATATTTCATGAACGAATTAAACATTTTGAAGTGGATTGTCATTTTATTCCCAACTTTCCAACAAAATAGAAGGGTTGATATCCATGGGATATGTGAAGATGGAGAACAATTGGACGATATCCTTACTAAAGCAGTAAATGGAGCAAGAATAAGCTATCACTTGACATATTTGCTTCAACTCGAGGGAGTGTGTTATAATATATGTTTATATTATAATTATGTATAGTCATCCTTTACTGTAATTTTACATTCCCTAGATTAGGGTTTCTTAGTTGCCTATATATACACTAAGATCATTATATTCTCAAAAAAATACACAGTACACTATGTTTCTATCCCAAAAGTTCTTGGTTCCGCTCTTTGTGGGTTTGTGTTTGTAGCTTAGAAGTTCTTGTTTTTGGTCTTTGTGGGTTTTTGGTTCTATCCCAGATCTGCTAAGTTGATCAGTAGTTTTTGTTCACAAACTCGAGTTCTCCATTCTAAAGGAAATTAGGGTTTATTGGATTTATTCCTCTTTAATATTTTTCATATTTGTATTTTTCCTTTATTAGTATTCTGGTATCTATTTATTCACCAACATAATAAGTTATTATGTAAATTTGATTTATTCAATATATCGTATAACACTATCACTTGGCATTTCGATAGTAGATGTTCAACTTCATATATTTGAGTCTTTTGCAGGTTGGTGACGAAGGGAACGGTGGATGAAAATGTCTATGAGATAGCAAAACGGAAGTTAGTCCTTGATGCTGCAGTTCTGGAGTCGGGTATAGAGATGGATAACGAGAGGGAGTCATCTGAGAAGACCATGGGGGAGATATTATCAGCAATTCTTCTTGGTTAGAGATTTTGTTACTGACTATAACCCAAAGTCCAGATTCATATTCTCAGTGCTCGCTTCTCATTCATTATGGTCGTAACCTTATATAGATGTAACATTTTGTTAACGCCTCATTGGTGCACAAAGCAATAGAGCTATCAAAAGTGTTAGTTTGTGCAGTATTAAATAGATGTAACATCACTAATGGCAACTAGGTTATACACATGTTATATATAGGAGATGGTACTTTTATAAAAGCAGAGGTTATTTTATTTTCATTTGATGTTTACGGACTTTTCAATTTGTAAGGATAAGGATGTAAAATACTCAAATGGATTAAATACCATTTTGGTTCAGTAGTTTTGGACTTTGTTCTATATTAGACCTTATACTCTGTAATTATGATAAATA

Coding sequence (CDS)

GGACTTTTTTTTGAGTTCTTTCTTTATGACAGTACGCAGGTAGCAGAAAGACAGACGATAGTTGACACTTTCAATAATGACACGTCTATATTTGCATGCTTGCTTTCTACTAGAGCAGGGGGACAGGGGTTGAACTTAACTGGGGCCGACACTGTTGTCATTCACGACATGGATTTCAATCCACAGATTGACCGCCAAGCAGAAGATCGTTGTCATCGAATTGGCCAAACCAAACCTGTCACTATATACAGGTTGGTGACGAAGGGAACGGTGGATGAAAATGTCTATGAGATAGCAAAACGGAAGTTAGTCCTTGATGCTGCAGTTCTGGAGTCGGGTATAGAGATGGATAACGAGAGGGAGTCATCTGAGAAGACCATGGGGGAGATATTATCAGCAATTCTTCTTGGTTAG

Protein sequence

GLFFEFFLYDSTQVAERQTIVDTFNNDTSIFACLLSTRAGGQGLNLTGADTVVIHDMDFNPQIDRQAEDRCHRIGQTKPVTIYRLVTKGTVDENVYEIAKRKLVLDAAVLESGIEMDNERESSEKTMGEILSAILLG
Homology
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BLAST of Cucsat.G18709.T32 vs. ExPASy Swiss-Prot
Match: Q9ZUL5 (Protein CHROMATIN REMODELING 19 OS=Arabidopsis thaliana OX=3702 GN=ETL1 PE=1 SV=1)

HSP 1 Score: 223.0 bits (567), Expect = 2.0e-57
Identity = 107/127 (84.25%), Postives = 120/127 (94.49%), Query Frame = 0 

Query: 11  STQVAERQTIVDTFNNDTSIFACLLSTRAGGQGLNLTGADTVVIHDMDFNPQIDRQAEDR 70
           STQV +RQTIVDTFNND SIFACLLSTRAGGQGLNLTGADTV+IHDMDFNPQIDRQAEDR
Sbjct: 637 STQVTDRQTIVDTFNNDKSIFACLLSTRAGGQGLNLTGADTVIIHDMDFNPQIDRQAEDR 696

Query: 71  CHRIGQTKPVTIYRLVTKGTVDENVYEIAKRKLVLDAAVLESGIEMDNERESSEKTMGEI 130
           CHRIGQTKPVTI+RLVTK TVDEN+YEIAKRKLVLDAAVLESG+ +D+  ++ EKTMGEI
Sbjct: 697 CHRIGQTKPVTIFRLVTKSTVDENIYEIAKRKLVLDAAVLESGVHVDDNGDTPEKTMGEI 756

Query: 131 LSAILLG 138
           L+++L+G
Sbjct: 757 LASLLMG 763

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BLAST of Cucsat.G18709.T32 vs. ExPASy Swiss-Prot
Match: Q7X9V2 (Protein PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1 OS=Arabidopsis thaliana OX=3702 GN=PIE1 PE=1 SV=1)

HSP 1 Score: 122.9 bits (307), Expect = 2.9e-27
Identity = 55/103 (53.40%), Postives = 79/103 (76.70%), Query Frame = 0 

Query: 11   STQVAERQTIVDTFNNDTSIFACLLSTRAGGQGLNLTGADTVVIHDMDFNPQIDRQAEDR 70
            ST   ERQT++  FN +  IF  +LSTR+GG G+NL GADTV+ +D D+NP +D+QA+DR
Sbjct: 1124 STPPEERQTLMQRFNTNPKIFLFILSTRSGGVGINLVGADTVIFYDSDWNPAMDQQAQDR 1183

Query: 71   CHRIGQTKPVTIYRLVTKGTVDENVYEIAKRKLVLDAAVLESG 114
            CHRIGQT+ V IYRL+++ T++EN+ + A +K VLD  V+++G
Sbjct: 1184 CHRIGQTREVHIYRLISESTIEENILKKANQKRVLDNLVIQNG 1226

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BLAST of Cucsat.G18709.T32 vs. ExPASy Swiss-Prot
Match: Q4IAK7 (Helicase SWR1 OS=Gibberella zeae (strain ATCC MYA-4620 / CBS 123657 / FGSC 9075 / NRRL 31084 / PH-1) OX=229533 GN=SWR1 PE=3 SV=1)

HSP 1 Score: 122.1 bits (305), Expect = 4.9e-27
Identity = 54/103 (52.43%), Postives = 77/103 (74.76%), Query Frame = 0 

Query: 11   STQVAERQTIVDTFNNDTSIFACLLSTRAGGQGLNLTGADTVVIHDMDFNPQIDRQAEDR 70
            +T+V +RQ + D FNND  I   +LSTR+GG G+NLTGADTV+ +D D+NP +D+Q +DR
Sbjct: 1420 ATKVEQRQILTDRFNNDPRILCFILSTRSGGLGINLTGADTVIFYDQDWNPAMDKQCQDR 1479

Query: 71   CHRIGQTKPVTIYRLVTKGTVDENVYEIAKRKLVLDAAVLESG 114
            CHRIGQT+ V IYRLV++ T++ N+   A +K +LD  V++ G
Sbjct: 1480 CHRIGQTRDVHIYRLVSEHTIEANILRKASQKQMLDDVVIQEG 1522

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BLAST of Cucsat.G18709.T32 vs. ExPASy Swiss-Prot
Match: Q9VL72 (SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A containing DEAD/H box 1 homolog OS=Drosophila melanogaster OX=7227 GN=Etl1 PE=1 SV=1)

HSP 1 Score: 121.7 bits (304), Expect = 6.4e-27
Identity = 56/96 (58.33%), Postives = 73/96 (76.04%), Query Frame = 0 

Query: 11  STQVAERQTIVDTFNNDTSIFACLLSTRAGGQGLNLTGADTVVIHDMDFNPQIDRQAEDR 70
           +T V  RQ ++  FN D SIF  LLST+AGG G+NLT ADT VIHD+DFNP  D+QAEDR
Sbjct: 701 ATAVNVRQDLITDFNGDDSIFVFLLSTKAGGVGINLTAADTCVIHDIDFNPYNDKQAEDR 760

Query: 71  CHRIGQTKPVTIYRLVTKGTVDENVYEIAKRKLVLD 107
           CHR+GQ +PVTIYRL+++ T++E +   A+ KL L+
Sbjct: 761 CHRMGQQRPVTIYRLISESTIEEGILMAAEEKLKLE 796

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BLAST of Cucsat.G18709.T32 vs. ExPASy Swiss-Prot
Match: Q5ARK3 (Helicase swr1 OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) OX=227321 GN=swr1 PE=3 SV=2)

HSP 1 Score: 121.7 bits (304), Expect = 6.4e-27
Identity = 53/103 (51.46%), Postives = 78/103 (75.73%), Query Frame = 0 

Query: 11   STQVAERQTIVDTFNNDTSIFACLLSTRAGGQGLNLTGADTVVIHDMDFNPQIDRQAEDR 70
            +T+V +RQ + D FNND  I A +LS+R+GG G+NLTGADTV+ +D+D+NP +D+Q +DR
Sbjct: 1422 TTKVEQRQILTDRFNNDNRILAFILSSRSGGLGINLTGADTVIFYDLDWNPAMDKQCQDR 1481

Query: 71   CHRIGQTKPVTIYRLVTKGTVDENVYEIAKRKLVLDAAVLESG 114
            CHRIGQT+ V IYR V++ T++ N+   A +K +LD  V++ G
Sbjct: 1482 CHRIGQTRDVHIYRFVSEYTIESNILRKANQKRMLDDVVIQEG 1524

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BLAST of Cucsat.G18709.T32 vs. NCBI nr
Match: KAG7031433.1 (Protein CHROMATIN REMODELING 19 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 250 bits (639), Expect = 9.36e-78
Identity = 127/127 (100.00%), Postives = 127/127 (100.00%), Query Frame = 0 

Query: 11  STQVAERQTIVDTFNNDTSIFACLLSTRAGGQGLNLTGADTVVIHDMDFNPQIDRQAEDR 70
           STQVAERQTIVDTFNNDTSIFACLLSTRAGGQGLNLTGADTVVIHDMDFNPQIDRQAEDR
Sbjct: 449 STQVAERQTIVDTFNNDTSIFACLLSTRAGGQGLNLTGADTVVIHDMDFNPQIDRQAEDR 508

Query: 71  CHRIGQTKPVTIYRLVTKGTVDENVYEIAKRKLVLDAAVLESGIEMDNERESSEKTMGEI 130
           CHRIGQTKPVTIYRLVTKGTVDENVYEIAKRKLVLDAAVLESGIEMDNERESSEKTMGEI
Sbjct: 509 CHRIGQTKPVTIYRLVTKGTVDENVYEIAKRKLVLDAAVLESGIEMDNERESSEKTMGEI 568

Query: 131 LSAILLG 137
           LSAILLG
Sbjct: 569 LSAILLG 575

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BLAST of Cucsat.G18709.T32 vs. NCBI nr
Match: PQM41564.1 (hypothetical protein Pyn_37170 [Prunus yedoensis var. nudiflora])

HSP 1 Score: 238 bits (606), Expect = 4.63e-77
Identity = 119/127 (93.70%), Postives = 123/127 (96.85%), Query Frame = 0 

Query: 11  STQVAERQTIVDTFNNDTSIFACLLSTRAGGQGLNLTGADTVVIHDMDFNPQIDRQAEDR 70
           STQV ERQTIVDTFN+DTSIFACLLSTRAGGQGLNLTGADTVVIHDMDFNPQIDRQAEDR
Sbjct: 99  STQVTERQTIVDTFNSDTSIFACLLSTRAGGQGLNLTGADTVVIHDMDFNPQIDRQAEDR 158

Query: 71  CHRIGQTKPVTIYRLVTKGTVDENVYEIAKRKLVLDAAVLESGIEMDNERESSEKTMGEI 130
           CHRIGQ KPVTIYRLVTKGTVDENVYEIAKRKLVLDAAVLESG+EMDNE E+SEKTMGEI
Sbjct: 159 CHRIGQVKPVTIYRLVTKGTVDENVYEIAKRKLVLDAAVLESGLEMDNEGETSEKTMGEI 218

Query: 131 LSAILLG 137
           LS +LLG
Sbjct: 219 LSKLLLG 225

[Close]
BLAST of Cucsat.G18709.T32 vs. NCBI nr
Match: KDO53552.1 (hypothetical protein CISIN_1g032027mg [Citrus sinensis])

HSP 1 Score: 233 bits (595), Expect = 1.70e-76
Identity = 114/127 (89.76%), Postives = 123/127 (96.85%), Query Frame = 0 

Query: 11  STQVAERQTIVDTFNNDTSIFACLLSTRAGGQGLNLTGADTVVIHDMDFNPQIDRQAEDR 70
           STQV ERQ IVD FNNDTSIFACLLSTRAGGQGLNLTGADTVVIHDMDFNPQIDRQAEDR
Sbjct: 22  STQVTERQAIVDAFNNDTSIFACLLSTRAGGQGLNLTGADTVVIHDMDFNPQIDRQAEDR 81

Query: 71  CHRIGQTKPVTIYRLVTKGTVDENVYEIAKRKLVLDAAVLESGIEMDNERESSEKTMGEI 130
           CHRIGQT+PVTIYRLVTKGTVDENVYEIAKRKL+LDAAVLESG+E+DNE ++S+KTMGEI
Sbjct: 82  CHRIGQTRPVTIYRLVTKGTVDENVYEIAKRKLILDAAVLESGVEVDNEGDTSDKTMGEI 141

Query: 131 LSAILLG 137
           LS+IL+G
Sbjct: 142 LSSILMG 148

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BLAST of Cucsat.G18709.T32 vs. NCBI nr
Match: KAG6600793.1 (Protein CHROMATIN REMODELING 19, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 250 bits (639), Expect = 2.49e-76
Identity = 127/127 (100.00%), Postives = 127/127 (100.00%), Query Frame = 0 

Query: 11  STQVAERQTIVDTFNNDTSIFACLLSTRAGGQGLNLTGADTVVIHDMDFNPQIDRQAEDR 70
           STQVAERQTIVDTFNNDTSIFACLLSTRAGGQGLNLTGADTVVIHDMDFNPQIDRQAEDR
Sbjct: 610 STQVAERQTIVDTFNNDTSIFACLLSTRAGGQGLNLTGADTVVIHDMDFNPQIDRQAEDR 669

Query: 71  CHRIGQTKPVTIYRLVTKGTVDENVYEIAKRKLVLDAAVLESGIEMDNERESSEKTMGEI 130
           CHRIGQTKPVTIYRLVTKGTVDENVYEIAKRKLVLDAAVLESGIEMDNERESSEKTMGEI
Sbjct: 670 CHRIGQTKPVTIYRLVTKGTVDENVYEIAKRKLVLDAAVLESGIEMDNERESSEKTMGEI 729

Query: 131 LSAILLG 137
           LSAILLG
Sbjct: 730 LSAILLG 736

[Close]
BLAST of Cucsat.G18709.T32 vs. NCBI nr
Match: XP_004140399.1 (protein CHROMATIN REMODELING 19 [Cucumis sativus] >XP_031741288.1 protein CHROMATIN REMODELING 19-like [Cucumis sativus] >KAE8648070.1 hypothetical protein Csa_018841 [Cucumis sativus])

HSP 1 Score: 250 bits (639), Expect = 2.72e-76
Identity = 127/127 (100.00%), Postives = 127/127 (100.00%), Query Frame = 0 

Query: 11  STQVAERQTIVDTFNNDTSIFACLLSTRAGGQGLNLTGADTVVIHDMDFNPQIDRQAEDR 70
           STQVAERQTIVDTFNNDTSIFACLLSTRAGGQGLNLTGADTVVIHDMDFNPQIDRQAEDR
Sbjct: 615 STQVAERQTIVDTFNNDTSIFACLLSTRAGGQGLNLTGADTVVIHDMDFNPQIDRQAEDR 674

Query: 71  CHRIGQTKPVTIYRLVTKGTVDENVYEIAKRKLVLDAAVLESGIEMDNERESSEKTMGEI 130
           CHRIGQTKPVTIYRLVTKGTVDENVYEIAKRKLVLDAAVLESGIEMDNERESSEKTMGEI
Sbjct: 675 CHRIGQTKPVTIYRLVTKGTVDENVYEIAKRKLVLDAAVLESGIEMDNERESSEKTMGEI 734

Query: 131 LSAILLG 137
           LSAILLG
Sbjct: 735 LSAILLG 741

[Close]
BLAST of Cucsat.G18709.T32 vs. ExPASy TrEMBL
Match: A0A0A0KSU2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G272400 PE=4 SV=1)

HSP 1 Score: 250 bits (639), Expect = 3.59e-78
Identity = 127/127 (100.00%), Postives = 127/127 (100.00%), Query Frame = 0 

Query: 11  STQVAERQTIVDTFNNDTSIFACLLSTRAGGQGLNLTGADTVVIHDMDFNPQIDRQAEDR 70
           STQVAERQTIVDTFNNDTSIFACLLSTRAGGQGLNLTGADTVVIHDMDFNPQIDRQAEDR
Sbjct: 439 STQVAERQTIVDTFNNDTSIFACLLSTRAGGQGLNLTGADTVVIHDMDFNPQIDRQAEDR 498

Query: 71  CHRIGQTKPVTIYRLVTKGTVDENVYEIAKRKLVLDAAVLESGIEMDNERESSEKTMGEI 130
           CHRIGQTKPVTIYRLVTKGTVDENVYEIAKRKLVLDAAVLESGIEMDNERESSEKTMGEI
Sbjct: 499 CHRIGQTKPVTIYRLVTKGTVDENVYEIAKRKLVLDAAVLESGIEMDNERESSEKTMGEI 558

Query: 131 LSAILLG 137
           LSAILLG
Sbjct: 559 LSAILLG 565

[Close]
BLAST of Cucsat.G18709.T32 vs. ExPASy TrEMBL
Match: A0A314UYG6 (Helicase C-terminal domain-containing protein OS=Prunus yedoensis var. nudiflora OX=2094558 GN=Pyn_37170 PE=4 SV=1)

HSP 1 Score: 238 bits (606), Expect = 2.24e-77
Identity = 119/127 (93.70%), Postives = 123/127 (96.85%), Query Frame = 0 

Query: 11  STQVAERQTIVDTFNNDTSIFACLLSTRAGGQGLNLTGADTVVIHDMDFNPQIDRQAEDR 70
           STQV ERQTIVDTFN+DTSIFACLLSTRAGGQGLNLTGADTVVIHDMDFNPQIDRQAEDR
Sbjct: 99  STQVTERQTIVDTFNSDTSIFACLLSTRAGGQGLNLTGADTVVIHDMDFNPQIDRQAEDR 158

Query: 71  CHRIGQTKPVTIYRLVTKGTVDENVYEIAKRKLVLDAAVLESGIEMDNERESSEKTMGEI 130
           CHRIGQ KPVTIYRLVTKGTVDENVYEIAKRKLVLDAAVLESG+EMDNE E+SEKTMGEI
Sbjct: 159 CHRIGQVKPVTIYRLVTKGTVDENVYEIAKRKLVLDAAVLESGLEMDNEGETSEKTMGEI 218

Query: 131 LSAILLG 137
           LS +LLG
Sbjct: 219 LSKLLLG 225

[Close]
BLAST of Cucsat.G18709.T32 vs. ExPASy TrEMBL
Match: A0A067EQR6 (Helicase C-terminal domain-containing protein OS=Citrus sinensis OX=2711 GN=CISIN_1g032027mg PE=4 SV=1)

HSP 1 Score: 233 bits (595), Expect = 8.22e-77
Identity = 114/127 (89.76%), Postives = 123/127 (96.85%), Query Frame = 0 

Query: 11  STQVAERQTIVDTFNNDTSIFACLLSTRAGGQGLNLTGADTVVIHDMDFNPQIDRQAEDR 70
           STQV ERQ IVD FNNDTSIFACLLSTRAGGQGLNLTGADTVVIHDMDFNPQIDRQAEDR
Sbjct: 22  STQVTERQAIVDAFNNDTSIFACLLSTRAGGQGLNLTGADTVVIHDMDFNPQIDRQAEDR 81

Query: 71  CHRIGQTKPVTIYRLVTKGTVDENVYEIAKRKLVLDAAVLESGIEMDNERESSEKTMGEI 130
           CHRIGQT+PVTIYRLVTKGTVDENVYEIAKRKL+LDAAVLESG+E+DNE ++S+KTMGEI
Sbjct: 82  CHRIGQTRPVTIYRLVTKGTVDENVYEIAKRKLILDAAVLESGVEVDNEGDTSDKTMGEI 141

Query: 131 LSAILLG 137
           LS+IL+G
Sbjct: 142 LSSILMG 148

[Close]
BLAST of Cucsat.G18709.T32 vs. ExPASy TrEMBL
Match: A0A6J1FXC0 (protein CHROMATIN REMODELING 19 OS=Cucurbita moschata OX=3662 GN=LOC111447914 PE=4 SV=1)

HSP 1 Score: 250 bits (639), Expect = 1.39e-76
Identity = 127/127 (100.00%), Postives = 127/127 (100.00%), Query Frame = 0 

Query: 11  STQVAERQTIVDTFNNDTSIFACLLSTRAGGQGLNLTGADTVVIHDMDFNPQIDRQAEDR 70
           STQVAERQTIVDTFNNDTSIFACLLSTRAGGQGLNLTGADTVVIHDMDFNPQIDRQAEDR
Sbjct: 618 STQVAERQTIVDTFNNDTSIFACLLSTRAGGQGLNLTGADTVVIHDMDFNPQIDRQAEDR 677

Query: 71  CHRIGQTKPVTIYRLVTKGTVDENVYEIAKRKLVLDAAVLESGIEMDNERESSEKTMGEI 130
           CHRIGQTKPVTIYRLVTKGTVDENVYEIAKRKLVLDAAVLESGIEMDNERESSEKTMGEI
Sbjct: 678 CHRIGQTKPVTIYRLVTKGTVDENVYEIAKRKLVLDAAVLESGIEMDNERESSEKTMGEI 737

Query: 131 LSAILLG 137
           LSAILLG
Sbjct: 738 LSAILLG 744

[Close]
BLAST of Cucsat.G18709.T32 vs. ExPASy TrEMBL
Match: A0A6J1JU99 (protein CHROMATIN REMODELING 19 OS=Cucurbita maxima OX=3661 GN=LOC111487952 PE=4 SV=1)

HSP 1 Score: 250 bits (639), Expect = 1.41e-76
Identity = 127/127 (100.00%), Postives = 127/127 (100.00%), Query Frame = 0 

Query: 11  STQVAERQTIVDTFNNDTSIFACLLSTRAGGQGLNLTGADTVVIHDMDFNPQIDRQAEDR 70
           STQVAERQTIVDTFNNDTSIFACLLSTRAGGQGLNLTGADTVVIHDMDFNPQIDRQAEDR
Sbjct: 619 STQVAERQTIVDTFNNDTSIFACLLSTRAGGQGLNLTGADTVVIHDMDFNPQIDRQAEDR 678

Query: 71  CHRIGQTKPVTIYRLVTKGTVDENVYEIAKRKLVLDAAVLESGIEMDNERESSEKTMGEI 130
           CHRIGQTKPVTIYRLVTKGTVDENVYEIAKRKLVLDAAVLESGIEMDNERESSEKTMGEI
Sbjct: 679 CHRIGQTKPVTIYRLVTKGTVDENVYEIAKRKLVLDAAVLESGIEMDNERESSEKTMGEI 738

Query: 131 LSAILLG 137
           LSAILLG
Sbjct: 739 LSAILLG 745

The following BLAST results are available for this feature:
BLAST of Cucsat.G18709.T32 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9ZUL52.0e-5784.25Protein CHROMATIN REMODELING 19 OS=Arabidopsis thaliana OX=3702 GN=ETL1 PE=1 SV=... [more]
Q7X9V22.9e-2753.40Protein PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1 OS=Arabidopsis thaliana OX=370... [more]
Q4IAK74.9e-2752.43Helicase SWR1 OS=Gibberella zeae (strain ATCC MYA-4620 / CBS 123657 / FGSC 9075 ... [more]
Q9VL726.4e-2758.33SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfami... [more]
Q5ARK36.4e-2751.46Helicase swr1 OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 /... [more]
BLAST of Cucsat.G18709.T32 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7031433.19.36e-78100.00Protein CHROMATIN REMODELING 19 [Cucurbita argyrosperma subsp. argyrosperma][more]
PQM41564.14.63e-7793.70hypothetical protein Pyn_37170 [Prunus yedoensis var. nudiflora][more]
KDO53552.11.70e-7689.76hypothetical protein CISIN_1g032027mg [Citrus sinensis][more]
KAG6600793.12.49e-76100.00Protein CHROMATIN REMODELING 19, partial [Cucurbita argyrosperma subsp. sororia][more]
XP_004140399.12.72e-76100.00protein CHROMATIN REMODELING 19 [Cucumis sativus] >XP_031741288.1 protein CHROMA... [more]
BLAST of Cucsat.G18709.T32 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KSU23.59e-78100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G272400 PE=4 SV=1[more]
A0A314UYG62.24e-7793.70Helicase C-terminal domain-containing protein OS=Prunus yedoensis var. nudiflora... [more]
A0A067EQR68.22e-7789.76Helicase C-terminal domain-containing protein OS=Citrus sinensis OX=2711 GN=CISI... [more]
A0A6J1FXC01.39e-76100.00protein CHROMATIN REMODELING 19 OS=Cucurbita moschata OX=3662 GN=LOC111447914 PE... [more]
A0A6J1JU991.41e-76100.00protein CHROMATIN REMODELING 19 OS=Cucurbita maxima OX=3661 GN=LOC111487952 PE=4... [more]
InterPro
Analysis Name: InterPro Annotations of Cucumber (B10) v3
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001650Helicase, C-terminalSMARTSM00490helicmild6coord: 1..75
e-value: 4.0E-10
score: 49.7
IPR001650Helicase, C-terminalPFAMPF00271Helicase_Ccoord: 8..75
e-value: 4.1E-12
score: 46.4
IPR001650Helicase, C-terminalPROSITEPS51194HELICASE_CTERcoord: 1..128
score: 12.49571
IPR027417P-loop containing nucleoside triphosphate hydrolaseGENE3D3.40.50.300coord: 5..135
e-value: 3.0E-49
score: 169.7
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 7..119
NoneNo IPR availablePANTHERPTHR10799:SF964SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY A CONTAINING DEAD/H BOX 1coord: 11..135
NoneNo IPR availablePANTHERPTHR10799SNF2/RAD54 HELICASE FAMILYcoord: 11..135
NoneNo IPR availableCDDcd18793SF2_C_SNFcoord: 3..86
e-value: 6.19887E-43
score: 136.067

Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Cucsat.G18709Cucsat.G18709gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Cucsat.G18709.T32.E1Cucsat.G18709.T32.E1exon
Cucsat.G18709.T32.E2Cucsat.G18709.T32.E2exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Cucsat.G18709.T32.C1Cucsat.G18709.T32.C1CDS
Cucsat.G18709.T32.C2Cucsat.G18709.T32.C2CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Cucsat.G18709.T32Cucsat.G18709.T32-proteinpolypeptide


GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006974 cellular response to DNA damage stimulus
biological_process GO:0071494 cellular response to UV-C
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0005634 nucleus
molecular_function GO:0005524 ATP binding
molecular_function GO:0008094 ATP-dependent activity, acting on DNA
molecular_function GO:0140658 ATP-dependent chromatin remodeler activity
molecular_function GO:0003682 chromatin binding
molecular_function GO:0003677 DNA binding
molecular_function GO:0004386 helicase activity