Cucsat.G18709.T32 (mRNA) Cucumber (B10) v3
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.GGACTTTTTTTTGAGTTCTTTCTTTATGACAGTACGCAGGTAGCAGAAAGACAGACGATAGTTGACACTTTCAATAATGACACGTCTATATTTGCATGCTTGCTTTCTACTAGAGCAGGGGGACAGGGGTTGAACTTAACTGGGGCCGACACTGTTGTCATTCACGACATGGATTTCAATCCACAGATTGACCGCCAAGCAGAAGATCGTTGTCATCGAATTGGCCAAACCAAACCTGTCACTATATACAGGTATTCCCTACACCTTTCCATCAAATTCTGGTTTACTTTTCATTGGTACAAAATTTGGATTCTCGGTGTTAAAGGAAATTATGGCTTATTGGATTTATTCTTATTTAATATTTTCCATATTTGTATTTTACCTTTATTAGTATTTTTGTCTGTATTTATTCACCAATGCAATAGATTATTATGTAACATTGATTTATTCAATATATTATATACAATTATCATGGTAACAGAGCTCTAGGATTTATTTTATTGAAATTTAGCTGCCGTTGCCGCCACTAGCCTTGTTCGACCTCTACCTCTGTCGTCTTGACTAGCAATCGACGGAGGTAATCGACAAATGTAATCGATGGAGGTAGACCCACATGTAGATTTGCCGCTCTCGAATGCCAACCCTTTTGCCCAACTCGTCGTTCCGTTTAAACCAGCACTCTGGTCCAGTGTTGTTTTCCATCTTTGGTTCATCCTTGAACCATTTGCTGTCCGTTTTTACATCTGCTCACCATTACTTAGATCCATTCATGCCGTCCAGATCTGTCTCCATGGGTTTTTCCAATTTGCTGTTCAGTTTGCTCCAGATCTGTCATGTTGAGTTTACGCCTTTGTAGGTCATGTGATTTTGTGGGTTCATTCTCTTTGTGGTCGTACAACTATGTCCAGATTTGGTTTCCGTTAAAGTCCTTATCGATGGAAAATTCATGCTTTTCTCAACCAGTTTGGTGTGGTTTAATAGCTCGATTGGTTCAATTTGGTTCAGTCTTGGTTCCCCGGTCTGGTCCAATTTTGGTTGGTTTAGCAGTTTGGTTCAGTTAGCCCAATTGTTATGTTCTATTTCCTGTTTTTGTTTCGTTTTCAAATGAGTTGTTCATGGGGTTTGTTATAGATCTCTCAATGAGAATCTTTGTTCCTGTTCAGAAGTTCTTGTTCTATATTAGGATTTATGAGTTGTAATGTGTTTATATTAAAATTATGTATAGTTGTCCTTTATTGAAATTTTACATTCTCTAGATTAAGGTTCCTTAGTTACGTATATTTATATGTATCTTCAACTTGATTAAATAATAAGACAATTATATTCTCCAAAAGTGGAGAGTACATGGTATCAAAGCCCGTTTAGGGTTTTGAATACCTGTTCATTTGTTTCACGACTACCTTCACACAAGGTTAGGGTTAGGGTTTAAGTTTGGCTCATAAAGTTTGAGTGGCTGTTTGTCTACACCACCCACTGAGCGTCGCTGCTGTTCACCTGAGTCTGAGTTCGTTGTTTGTTGGAAACAGTCATGTGTGAGGATCACATCCTGTCAGATGGAAATTGTTATGTCTCCATGCGCCGGTACGTGTAAGTGCGTGGGAGTTCCATTTTTTTTTTTCGTCGGTTGGTTTCGTGATGATTTGCGTTCTTTGGCTGGTTTGTGCATTTGGTATTGTTAGAATTAGTGGGTTTGTTGTATGTTGAAAGGTCAATGGTAGTTAGAATTATTCTTTTCTTTTTAATTAGGCTCTTGTCATCTATTGAGTTTCCCCTCTTGTATCATTTGTTGAATAAGAAAAATGATAACAACCCCCTACTGTGGGTTTTTTTTCCCTATACTAGGGTTTCCATGTAAGTTTGTGTGTTGTTCTTTGTCGTTATTTTTAATATGGTATTAGAGCGGAATAACGACGAAATCCTAGACACCAATATCGATAAAACCCAAACAGAGGAGAACCTCACTGTTGTTGTCGAGATCAACGCCACCGCCACGGACGATCTGTTCTATCGTCTTCAGATAACGGCTATCGAAGCAACCCTTCAATCGCACATGCCTTCAATTGCTTTCACAGCCCTTTACCAACCACAACCATCAGTTGTCCACGCACCATCACTTCCTATCTTCACGCCATGGAACAGTCTTGCTTAGCCGCAGCTGCACCCAACCCTACCTCAGTTGCGGTTTGTTAGTCTTGTCCAGTCAACTTTTGAGGTTGGTGAATCCTCGACTTAGTCCAAACCTCATGTGCAGGATTTCTATCAGGTTACCACCCGACAACAACTAAACAAGCTTCAACAGTAAATCACAACATTTAAGGCAATGTTAGGGGCTCTTACTAATACTTCCAGTCGTGGTCTTCATACAACCTTACTGATGTATTATGAGAATCCAGTAACTTTGTTCCCCATTTTGTTCTCTACTTATGTGTTTAATTCGGTGGTACAATTTAAGAAGTCTTTACATGGGAGAAGTTGAATGGCCAAAGGCCCAAAACTATTTCTTGTGGTCCCCATTTGTTAAAATGATCATGGAGGCTGCTACAAATTTGTCTTTTTAACGAGAGAGATATCATGTCCTCTACCAGGAGATCCCTAGGAACGCTACTGGAAATGGGAGGATTCTCTTATTCAGGCCATGTTGATCAACACTATGGAGCCACAGATTGGCAAACCCTTATTGTATGTTACAACGGCCAAGGATATATGGGGCACCTCAAAAGCTCTATTTGAAACGCCAAAATACCTCTTGCCTCTACACACGGCAAAAGCAAGTCCATGCATGCAAGCATGGGACTATGGATGTAACATTTTACTTTAATAAAGTCTCTTATTTCCTGATGGATCTTTAAAGAGATTGTTTGGAACTGTCCCAGTCATGGCATACAACACTAGGGACTTGAAGAGGTTGACAGAGTATATGACTTCCTTGCTGGTCTCAACTTGAAGTTTGATGTAGTTCATAGTTGTATACTAGGTCGGAGACCTATTTCCTCCTTAATGGAGGTTTGTTCTGAAGTCTGCCTTGAGGAGGATCGTATGAGCGCCATGAACATTCTCACCACTCTTGCCATTGATTTTGTTGCCTTCAGTGGGAGATTCTTTATTCATGACAAGGAGAAGCACAATGAGAAACTGGTTCCCGATCTATGAGCATTGCAAGAAACAGTGGGACACTAAATAACAATGTTGGAAATCATGTGGTCATCCTCTAAGAGGCAAGGAATGTCCTCCGAACGAAAAATAGAACGCCCTCCATTTCTCATCCCATCCATTTCTTTGCCCCATGTATTGCATTTGCCTCGGTTGTCCTTTAACTTAATTTCTATTAGCCAGCTTACCCGTGATCTTAATTGTTTTCTCGTTTTTTTCCTAGTTATTACTTGTTTCAGGATTGTATGACGAAGAAGATTATTGGTAGAGGACACAAACGGGGGCCTTTACATTTTTTACCAACAAATATTTGTAGCTTGCTTTGGAGTTACATTCCCGTTTGAAGCTTATTGTCGTTTGGGGCATCCATCTTTGTTCATGTTGAAGAAATTTTGTCAAGAATTCTATTCCTTGTCATATTTGACTTGTGACTTGTGTCAATTTGCTAAATTTCATCGTCTTAGTTCTAGACTTAGAGTCTCTAAACGAGTTTGTGCTCCTTTTGAGTTAATTCATTTCAATATATGGGGTTTTGTCCAGTTTGTGTCTCAAACAAGTTTTTGTTATTTTGTTACTGTGGTTGATGATTACACTCATGTAACTTGGCTATATTTAATGAAAAGTTGTTTAGAGTTGTCTCATTTTTGTGTTTTTCATGTTGAAATATGAACTCAATTTAATGTCTTGTCAAATCCTCGCACAAATGAATATTTCTCTCATGTACTTGGCTCTTACGTGATCATAGCATCATTTGGCAATCTCTTGTGTAGACAATCCATCCCAAAATGGAGTTATAGAAAGAAGGAACAGGCACTTACTTGAAACAACTTGAGCCTTCTCTGTTTAGATGCATGTTTCGAAGCTCTTTTGAGCTAATGCTGTTTTCACTGCTTACTTCCTGATTAATCGAATTTTTCCTCTATCCTCAGTGGTGAGATTCCTCATCGTGTCCTCTTTCGTACCAAATCTTTGTTTCTATAGTCCTTAAGATCTTTGGTTGTGTCTGTTTTGCTCAAGGTGTTCGTCCTCATTGTACTGAATTAGACCTAAAGTCTTTGAAATTAATATTCTTAGACTATTTGCATGTTCAAAAGAGTAATTGTTGTTTTTGTCCCACTTTAAACAGGTATCTTGTATCTCTTGATGTTCAATTTTTTGAAACTTTGCCCTTTTGTCAACCGTTGTTGATTTCGAGTAAGGGAGAGAGTGGTGATCTTTTTATTTGTTAGATACTTCTCCTACATCATCCCTCTCCTACACCTTCCTTTGATTCTCTTCTTTCTGGCCCACCTGTTTTTTGAATCTACTCCAGGCACCTTCCACAACAGCTTTCAGACCCATGTCCTACACCACTAACTTCTTTGCTATCTGATCTAGGACCAAGTGATGATCTTCCCGTTACCCTTTGTAGAGGTAAATGCACTGTGCTTACCTTATTTCTTCGTTTGTTTCATATACCCAGTTGTCTTTGTAATCTAGAATTCAGAGAGTATATTTCTTATTCATATAGAGTTAGAGAAAAGTTACATATATATATAGAGAGAGAGAACAAATAAACCCTTCCCAATATGTATAATTATGATAAAGGACATATATTATAAATATATATCATAACAATCTTCACCCACATATTCCTTTATTACATTCGTTGATTCGACCTCCATCCTTAACTCTGTTCATGACGCTTTATCTTATTTTGGGTCACATAGTGCAATGATCGAGGAGATGACTAATCTAAATGATAATGGTACTTGGGATCTGGTTTTGCATCTAGTGGGAAAGATATCTATTGGGTGTAAATGAGTGTTTGCTATAAAGGTCAACCTTGTATAAACAATGGCTTGGTTGAAAGTTGGTCTTGTTGCTAGAAGTCATCTCCAAGTCTAAGGGATTGATTATTTTGATACATTTTCCTGTTGGCAAGTTAATTTCCATTCGACTATTTCTTTCCATGGCGGCTGCTCAAAGTTGCTTTCACATCAACTCGACATTAAGAATTCTTTTCTTAATGGTGATATTCAGGGAGAAGTTTATATGGAGCAACCACCTAGGTTTGTTGCTTAAAGAGAGTGAAAAGGTGTGTTGCCTTCTGAAGTCTATGTATGGACTGAAACAAAGTCCTCGTGCATGGTTTGAAAAGTTTAATCAAGCACTCAAATGTTTTGGTATGAAGAAAAGTATGTTTGATCGTTCTGTATTCTACTGATGATTTGACAATGGTGTAACTTTGCTTGTTGTATTTGTTGATGATATCGTTATCATGGGAAATGATATGTCAAGTATATCATCTCTCAAGATTTTCTTCCATGGCCAATTTCATACCAAAGATTTGAGGCGATTGAAGTATTTCTTGAGTATTGAAGTAATGAGAAGCAAGAAAGGTATTTCTGTCCTAACGAAAATATATATTTGATTTGTTGTCTGGGCAGGTAAATTAGGAGTCAAAGCATGTAGTATTCTAATGATACCAAATTTGTAACTTGTTAAGCAAGGAGAATTGTTTAAAGTTCTTGAGAGATATAGAAAATTCGTTGGAAAGTTGAATTATTTAAAAGTGTCACGACCTGATATGTTTATTTTGTGGGTATAGTGAATCAATTTATGTCTCCATCGATTGTGGATCATTGCGTTGCATTAGAACAAATCCTATGTTATCTAAAAGCTGCACTTGGACGTGAGATTTTATATAAAGATCATGGTCATACAAGGGTTAAATGTTTTTCAGATGCTGATTGGGTTGGATCTATAGAGGATTGGAGATCGACCTCTGGATAGTGTGTTTCAGTTGGAGGAAACTTGGTGTTGTGGAAAAGTAAGAAATAAAATGTAGTTTCACGTTCGAGTGTTGAGTCTGAATATGGAGCTAAAAAACAATTGGGTGAAAGTGTGGATACAACTTTTATTTGAGATCGGCTTCAGTGTTAATGTGCCAGGTAACTATGGTGTAATAATCAAACTACTCTTCACATTGCATCCAAACCAATATTTCATGAACGAATTAAACATTTTGAAGTGGATTGTCATTTTATTCCCAACTTTCCAACAAAATAGAAGGGTTGATATCCATGGGATATGTGAAGATGGAGAACAATTGGACGATATCCTTACTAAAGCAGTAAATGGAGCAAGAATAAGCTATCACTTGACATATTTGCTTCAACTCGAGGGAGTGTGTTATAATATATGTTTATATTATAATTATGTATAGTCATCCTTTACTGTAATTTTACATTCCCTAGATTAGGGTTTCTTAGTTGCCTATATATACACTAAGATCATTATATTCTCAAAAAAATACACAGTACACTATGTTTCTATCCCAAAAGTTCTTGGTTCCGCTCTTTGTGGGTTTGTGTTTGTAGCTTAGAAGTTCTTGTTTTTGGTCTTTGTGGGTTTTTGGTTCTATCCCAGATCTGCTAAGTTGATCAGTAGTTTTTGTTCACAAACTCGAGTTCTCCATTCTAAAGGAAATTAGGGTTTATTGGATTTATTCCTCTTTAATATTTTTCATATTTGTATTTTTCCTTTATTAGTATTCTGGTATCTATTTATTCACCAACATAATAAGTTATTATGTAAATTTGATTTATTCAATATATCGTATAACACTATCACTTGGCATTTCGATAGTAGATGTTCAACTTCATATATTTGAGTCTTTTGCAGGTTGGTGACGAAGGGAACGGTGGATGAAAATGTCTATGAGATAGCAAAACGGAAGTTAGTCCTTGATGCTGCAGTTCTGGAGTCGGGTATAGAGATGGATAACGAGAGGGAGTCATCTGAGAAGACCATGGGGGAGATATTATCAGCAATTCTTCTTGGTTAGAGATTTTGTTACTGACTATAACCCAAAGTCCAGATTCATATTCTCAGTGCTCGCTTCTCATTCATTATGGTCGTAACCTTATATAGATGTAACATTTTGTTAACGCCTCATTGGTGCACAAAGCAATAGAGCTATCAAAAGTGTTAGTTTGTGCAGTATTAAATAGATGTAACATCACTAATGGCAACTAGGTTATACACATGTTATATATAGGAGATGGTACTTTTATAAAAGCAGAGGTTATTTTATTTTCATTTGATGTTTACGGACTTTTCAATTTGTAAGGATAAGGATGTAAAATACTCAAATGGATTAAATACCATTTTGGTTCAGTAGTTTTGGACTTTGTTCTATATTAGACCTTATACTCTGTAATTATGATAAATA GGACTTTTTTTTGAGTTCTTTCTTTATGACAGTACGCAGGTAGCAGAAAGACAGACGATAGTTGACACTTTCAATAATGACACGTCTATATTTGCATGCTTGCTTTCTACTAGAGCAGGGGGACAGGGGTTGAACTTAACTGGGGCCGACACTGTTGTCATTCACGACATGGATTTCAATCCACAGATTGACCGCCAAGCAGAAGATCGTTGTCATCGAATTGGCCAAACCAAACCTGTCACTATATACAGGTTGGTGACGAAGGGAACGGTGGATGAAAATGTCTATGAGATAGCAAAACGGAAGTTAGTCCTTGATGCTGCAGTTCTGGAGTCGGGTATAGAGATGGATAACGAGAGGGAGTCATCTGAGAAGACCATGGGGGAGATATTATCAGCAATTCTTCTTGGTTAG GLFFEFFLYDSTQVAERQTIVDTFNNDTSIFACLLSTRAGGQGLNLTGADTVVIHDMDFNPQIDRQAEDRCHRIGQTKPVTIYRLVTKGTVDENVYEIAKRKLVLDAAVLESGIEMDNERESSEKTMGEILSAILLG Homology
BLAST of Cucsat.G18709.T32 vs. ExPASy Swiss-Prot
Match: Q9ZUL5 (Protein CHROMATIN REMODELING 19 OS=Arabidopsis thaliana OX=3702 GN=ETL1 PE=1 SV=1) HSP 1 Score: 223.0 bits (567), Expect = 2.0e-57 Identity = 107/127 (84.25%), Postives = 120/127 (94.49%), Query Frame = 0
BLAST of Cucsat.G18709.T32 vs. ExPASy Swiss-Prot
Match: Q7X9V2 (Protein PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1 OS=Arabidopsis thaliana OX=3702 GN=PIE1 PE=1 SV=1) HSP 1 Score: 122.9 bits (307), Expect = 2.9e-27 Identity = 55/103 (53.40%), Postives = 79/103 (76.70%), Query Frame = 0
BLAST of Cucsat.G18709.T32 vs. ExPASy Swiss-Prot
Match: Q4IAK7 (Helicase SWR1 OS=Gibberella zeae (strain ATCC MYA-4620 / CBS 123657 / FGSC 9075 / NRRL 31084 / PH-1) OX=229533 GN=SWR1 PE=3 SV=1) HSP 1 Score: 122.1 bits (305), Expect = 4.9e-27 Identity = 54/103 (52.43%), Postives = 77/103 (74.76%), Query Frame = 0
BLAST of Cucsat.G18709.T32 vs. ExPASy Swiss-Prot
Match: Q9VL72 (SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A containing DEAD/H box 1 homolog OS=Drosophila melanogaster OX=7227 GN=Etl1 PE=1 SV=1) HSP 1 Score: 121.7 bits (304), Expect = 6.4e-27 Identity = 56/96 (58.33%), Postives = 73/96 (76.04%), Query Frame = 0
BLAST of Cucsat.G18709.T32 vs. ExPASy Swiss-Prot
Match: Q5ARK3 (Helicase swr1 OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) OX=227321 GN=swr1 PE=3 SV=2) HSP 1 Score: 121.7 bits (304), Expect = 6.4e-27 Identity = 53/103 (51.46%), Postives = 78/103 (75.73%), Query Frame = 0
BLAST of Cucsat.G18709.T32 vs. NCBI nr
Match: KAG7031433.1 (Protein CHROMATIN REMODELING 19 [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 250 bits (639), Expect = 9.36e-78 Identity = 127/127 (100.00%), Postives = 127/127 (100.00%), Query Frame = 0
BLAST of Cucsat.G18709.T32 vs. NCBI nr
Match: PQM41564.1 (hypothetical protein Pyn_37170 [Prunus yedoensis var. nudiflora]) HSP 1 Score: 238 bits (606), Expect = 4.63e-77 Identity = 119/127 (93.70%), Postives = 123/127 (96.85%), Query Frame = 0
BLAST of Cucsat.G18709.T32 vs. NCBI nr
Match: KDO53552.1 (hypothetical protein CISIN_1g032027mg [Citrus sinensis]) HSP 1 Score: 233 bits (595), Expect = 1.70e-76 Identity = 114/127 (89.76%), Postives = 123/127 (96.85%), Query Frame = 0
BLAST of Cucsat.G18709.T32 vs. NCBI nr
Match: KAG6600793.1 (Protein CHROMATIN REMODELING 19, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 250 bits (639), Expect = 2.49e-76 Identity = 127/127 (100.00%), Postives = 127/127 (100.00%), Query Frame = 0
BLAST of Cucsat.G18709.T32 vs. NCBI nr
Match: XP_004140399.1 (protein CHROMATIN REMODELING 19 [Cucumis sativus] >XP_031741288.1 protein CHROMATIN REMODELING 19-like [Cucumis sativus] >KAE8648070.1 hypothetical protein Csa_018841 [Cucumis sativus]) HSP 1 Score: 250 bits (639), Expect = 2.72e-76 Identity = 127/127 (100.00%), Postives = 127/127 (100.00%), Query Frame = 0
BLAST of Cucsat.G18709.T32 vs. ExPASy TrEMBL
Match: A0A0A0KSU2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G272400 PE=4 SV=1) HSP 1 Score: 250 bits (639), Expect = 3.59e-78 Identity = 127/127 (100.00%), Postives = 127/127 (100.00%), Query Frame = 0
BLAST of Cucsat.G18709.T32 vs. ExPASy TrEMBL
Match: A0A314UYG6 (Helicase C-terminal domain-containing protein OS=Prunus yedoensis var. nudiflora OX=2094558 GN=Pyn_37170 PE=4 SV=1) HSP 1 Score: 238 bits (606), Expect = 2.24e-77 Identity = 119/127 (93.70%), Postives = 123/127 (96.85%), Query Frame = 0
BLAST of Cucsat.G18709.T32 vs. ExPASy TrEMBL
Match: A0A067EQR6 (Helicase C-terminal domain-containing protein OS=Citrus sinensis OX=2711 GN=CISIN_1g032027mg PE=4 SV=1) HSP 1 Score: 233 bits (595), Expect = 8.22e-77 Identity = 114/127 (89.76%), Postives = 123/127 (96.85%), Query Frame = 0
BLAST of Cucsat.G18709.T32 vs. ExPASy TrEMBL
Match: A0A6J1FXC0 (protein CHROMATIN REMODELING 19 OS=Cucurbita moschata OX=3662 GN=LOC111447914 PE=4 SV=1) HSP 1 Score: 250 bits (639), Expect = 1.39e-76 Identity = 127/127 (100.00%), Postives = 127/127 (100.00%), Query Frame = 0
BLAST of Cucsat.G18709.T32 vs. ExPASy TrEMBL
Match: A0A6J1JU99 (protein CHROMATIN REMODELING 19 OS=Cucurbita maxima OX=3661 GN=LOC111487952 PE=4 SV=1) HSP 1 Score: 250 bits (639), Expect = 1.41e-76 Identity = 127/127 (100.00%), Postives = 127/127 (100.00%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucumber (B10) v3
Date Performed: 2021-10-25
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
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