Cucsat.G1823.T19 (mRNA) Cucumber (B10) v3

Overview


Name	Cucsat.G1823.T19
Type	mRNA
Organism	Cucumis sativus L. var. sativus cv B10 (Cucumber (B10) v3)
Description	MADS-box protein SVP-like
Location	ctg1002: 2846980 .. 2851895 (-)
RNA-Seq Expression	Cucsat.G1823.T19
Synteny	Cucsat.G1823.T19

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TTGCCGCTACTCATTGGTGGCTTTCCATCTTTCTCAAAAAACCAACCCTAACCGGTAAGTCTATGCTTTAAATTCTACATTCATTTTCATTTCACTTCCAAACATCTTTCACGCATTTTCATTCTGCGCGGATTTTTCTTTTTCCCTTTTCTATGATCACATCCTTCTTCTTTTGGATCTGCGATTACGACTCCTTCTACCTTCTTCTTTCGCTCTCCAACACCTGATTCTTGCACAAATATGGAAATAATAATGTCGCTCTTCCATCTCTGCAACTCCGATTCTTGATATCCTCTTTGTTCTGTGTTTCTCTTTTATTTTTTTGCTATTTCTGGCTTGAATCATTCAATTGTTTGCTGGTTAGTTGGCCTCTTTACTGTTTGTTTTTACGAAACTAGAAATTTCTCTGACTGGAACTGTTTTATCTCAACTTTTTCTTGTTTTCTCTCAATTTTCTCACTGTTTCTTTTTCAGAAAGCAAGAGTAGTCATAAGAGGTTCAAATGGCGAAAGAGAAAATCCAGATCAGGAAGATCGATAACGCGACGGCGAGGCAGGTCACTTTCTCCAAGCGTCGGAGGGGACTTTTCAAGAAAGCCAAAGAGCTTTCCGTTTTATGCGATGCCGATGTGGCCCTCATTATCTTCTCTGCCACCGGAAAGCTGTTCGAGTACTCCAGCTCAAGGTTTCTCTCTGCTTCCCTCTCTCTCTCTCTTTTTTCTTTTTTATTGTAGAAACTAAAATTTTAATTTCTGAGTTCTTCTGCTTTTTCTGATACCTTAATTCCATATATAAAGGACACCATGTTACTAAAAATGGAGAAAACCGTGATAGAAATAAAGAGTAGAGCGAAGAAAACAAATGTATTTTGGTCACCACAATCTTACGGAAAAAACAAGAACAAATGAGAAAACATTAACTAATTCTTTAATGGATAAAAGAGGAAATTCTTGTAAAGTAGTGCCTAATAAAATTTGTCATAAACAAGCGGAAAAGGCTAAATGGAAACTATAAATCATGTCTCGAGCCTCGCCCTCTCACCAACAACGAGGTTTATGGTAATAGTGATGACTCAACTTTTCAGTCACTTAATTCTAACTTATTGCGGTTATTATAATGATGCTATGGTTGACACCTAGCTGATTTTGTTGATTATCTTTAAATTATATGGATTGAAGTGACGAACATGGATATTTGTTACTTTTAATTTCTTGACGGGTAGTCATTTCCTCCACTGACTATAGTATCTGTATTTGTATTTCTGAAGCATGAAGGGAATCATAGAAAGACATAATTTGCACTCTAAGAACCTTCAGAAATTGGAACAACCATCCCTTGAATTACAGGTTTGGCGTTTATTTTCCGGACATTTCCTATAAAAATGGTCATCATTTTTTTTTCTCTAACTGTTCTAAAAAGATACAAATTAATAATATTATTGTTGAAGCCGAAACCATAGTTTATGAATTTGTCATTTTAAACAGGAAAAAAATTATTTGTTTTAGGAACACAATTTACTGTGGAAATCAGTGAAAGACAAAACAAGGAAAAAAAAGTACAGTTATACAGCAGTTGTATTTCTTCGGCACAACAAATGTGCAATTGGAGACTGAACCTCCACTACTAGAGTAAAGTCACGTCAATTTGTTAATACCACTAAACCCAGCTGACTATACTATAGCACACCTAAAAATTGATTTTTATTGTATAAAATCGAAAGCATTTTTTATGTTTTTCTTAATAAGCACGGTGCAAAATTACTTTTCTCATCCTGAAGTTTAGTTTGTATTCTATTTAACTAGTAGATTATGCACAGCAATACATTAGTTATCCAGTACGCTATTTTTTCTGAACGCTGTGTCTTCAGAATTTTAAATTTGTTAGCTTATATTGGTGTCACTTGTAACATTTTCATTTTCTATTTATTGAATTTTGAATAACTACTTCGACTCTCTCGAATCTGTATGTAGATTCCAGAAAGAACACGGTCAAGAGAAGGGTAAAAGGTTTATATTTGGGTCAAGCTTATTTTTGTAACACAATAAAATACTTCACTCGTCATTCGTCCTGAACGGACAAAAATCAATATTAAAAAAAGAGATCTTTAGTTTATTATATTTGTAACTTAAGGACTTGTTTATTTTAGTCAATATCGTGGTCACCTCTCATTGGTTTACTGAATATTGCTTACACTGTCGATGATTTCAGCTGGTAGAAAACAGCAATTACACCCGATTAAACAAGGAAATTGCTGAAAAAACTCATCAACTAAGGTATCTCTAGTTTTACACCAGAAGTTATATTTTCTTTTCCTTTTGAATCTTAAACTCATCAGCAATTACTATAATAGAAAGAGGTGAATTTTGAATCTTACACCTAAAGGGAATAAATAGTTATTTAAAATTATTTGCCTTGGGCTACACCCATTTTTTCACCCCACCCCACCCACACGCAGCAGAAAAACGTTAATAAAAAAATTGAAAAGGAAAAGGGGAAATTTGCATGTGGCAAACTATAGTTGAATGGGTGTAGCATAGCTATCAATTATGCTGTCTTTTTTAATTAAAAAAATTGGAAGGGGTTTTGCCCACTTATTTTTTAAGTTGTATGAATTATGATATAACTTAACCATCTTGTATTTCTTTGGCTTACACCTTTTTCAATAAATTTTATCTTCACAATTCTACCATCCAAACATAGGCTTCTTAACACCAACTACATAACCTAAAACTTTATATCATCATTGCATTTCACCAAAGACTTCATAACATCATTTAACGTGCATTCACCAAGATGTTTTATTTCTGTTTTCAAATATTTTATTTTAATTTATGTGTGTAATGAAAGTGAGATACATTCAAGATGGATGCCATTCCAAATGCATTAAAGTATTATACATTTAAAATGTAAAACTTAGGAGATGTACTAGAATAAAAATGAGGTTTTATTTTATCCACTTAGAAGATGTACTTCAATAGTTGAATACATGATTTAATTTGATTCCTTCACCTGAATACATAGTATAGTTAAGTACACCTTTCAATCTGTCCTCTTTATAAAAAAATAAACATAAAAAAAGGAAAATTTATTGGCTGTGTGAGACTCTTTTTATTGGTAGCGGTTGTCTAATAGCGTTGGATACATTTAATTATTTAGATTTGGATGTTTTGGTTTCTAAATTTAATCATTTTTTACGTTTTTGTTTACTTGATTTTGTAGTTAGGTTTGAGTGTTTTCATGATTAGGTATGGACATTCATTCTTCTGCCTGTTGGTTTCGTGGTTAGGTTTTAGTGTTATTGTGTCTAGGAGACGTACGGCATTTCTATTTCTACCATATTATTTTGGTCTTGTATTTCACACGATTATTAGTTTTGAGGAGGTATTCATTATAACATTCTAAAGAAACTTCAAAGGTTTGAATTGATGGAGTTGGATTATTAATTGAAAAATCAAGACATGTTCACGTAAATAAAGGCTATGGATTGGTTTGGTCTTTTCTCTTGTACTTACTAGATGGAACAAGAGAAATTGTAGATACTTTTTGTCGCATTTCAGAGATTGACAGACTACATTGGCCTCTTATTCAAACAAAATTCTCACTCACATAGTACTACACGATAGATCAGAGCATTTACACGAACACGATTAAATTTGATGACAATCTAGGCAGATGAGGGGTGAGGAACTTCAAACATTGAATATAGAGGAATTGCAGCAGTTGGAGAAGTCACTGGAGTCTGGATTGAGCCGTGTGATGGAGAAAAAGGTATTTTCCCTTTCCTTGCCGTTGGTAAAAAAATCCTATTTTCTTCTCAGATATGGTTCCGTTTTTATGTCCCAGGGTGAACGGATCATGAAAGAGATCACTGACCTTCAAAGAAAGGTTAAGTTCTACCTTCAAATAACTAAGGCTATTGCCAAAAGACCCGTTTTAGGAGAATTTAAGTACTTGATAATAATATCATGTATGTAATTTAGTTATATTCATGAATATCTTTTTTATGTTTATATTTATAAGCATGTGGTTTTTCATCAATGATACAAATTTTGTAATCTTTTTTCATATCATCGGATGTAAATAGCTTGTGCCATTACTCTCGTAAATACGAATGAATATGCTGCTTATTGTTTAATTATCAGATGAGGAATGAATATGAATATGCTATTTATTACTAAATTCAAAGTTTTATATATATGCAGTCGGCCGAGCTGATGGATGAGAATAAGCGATTGAAACAACAAGTAAGAAGCCTATTCCACAGCTTACTAATATAAAATGTGTCCTTGAAATCCATTCGTAACTTACAGACGTGGAGGTTTGCAGGCGGAGAAAATGAATGGCGTAAGGCACCTGGGCGTAGAGCCCGAGATTTTGGTCGTGGAGGATGGCCAGTCGTCGAATTCCGTCACTGAAGTTTGTGTTTCCAACTCCAATGGCCCGCCTCAAGATCTGGAAAGCTCAGACACATCTCTTAAATTAGGGTACCGTCGTTGCATAAAAATTGATTTAAAATTATGTTCTACTGATGTTCATTTAGACTGGCGAAGTTTAGTATGATCGAGAGAATCCAATTGTGTGATTGCAGGCTGCCGTATTCCGGATGATGGTGACGATCGATGATCGAACAAGAAGATGAACAGGTACTGTAGCTAGCAAAAATGGTAGTGTGTAAAAGTAATTATACTCTAAAATTCGGGTTAAGTTTGGTAATTGAAATCTAAATCTAACCCATGTCATCTTCATTATCCAATTCACATGACTCCCATTGAAATCTGAAAACAGGGTTGCATTCAAAGAATTCAATGCACCGTTTTAATGAATCAAATTAGAATGCAAGTGGGCTTTTGATAAAGCCTTGGCCACTCCTATGGTATGTGCGTGTAGTCGTAGTTTTGGGGTAATGACTTAACGATG

Coding sequence (CDS)

ATGAGGGGTGAGGAACTTCAAACATTGAATATAGAGGAATTGCAGCAGTTGGAGAAGTCACTGGAGTCTGGATTGAGCCGTGTGATGGAGAAAAAGGGTGAACGGATCATGAAAGAGATCACTGACCTTCAAAGAAAGTCGGCCGAGCTGATGGATGAGAATAAGCGATTGAAACAACAAGCGGAGAAAATGAATGGCGTAAGGCACCTGGGCGTAGAGCCCGAGATTTTGGTCGTGGAGGATGGCCAGTCGTCGAATTCCGTCACTGAAGTTTGTGTTTCCAACTCCAATGGCCCGCCTCAAGATCTGGAAAGCTCAGACACATCTCTTAAATTAGGGTACCGTCGTTGCATAAAAATTGATTTAAAATTATGTTCTACTGATGTTCATTTAGACTGGCGAAGTTTAGTATGA

Protein sequence

MRGEELQTLNIEELQQLEKSLESGLSRVMEKKGERIMKEITDLQRKSAELMDENKRLKQQAEKMNGVRHLGVEPEILVVEDGQSSNSVTEVCVSNSNGPPQDLESSDTSLKLGYRRCIKIDLKLCSTDVHLDWRSLV

Homology

[Close]

BLAST of Cucsat.G1823.T19 vs. ExPASy Swiss-Prot
Match: Q9FUY6 (MADS-box protein JOINTLESS OS=Solanum lycopersicum OX=4081 GN=J PE=1 SV=1)

HSP 1 Score: 112.8 bits (281), Expect = 3.0e-24
Identity = 73/135 (54.07%), Postives = 94/135 (69.63%), Query Frame = 0


Query: 1   MRGEELQTLNIEELQQLEKSLESGLSRVMEKKGERIMKEITDLQRKSAELMDENKRLKQQ 60
           MRGEELQ LNIEELQQLE+SLE+GLSRV+E+KG++IM+EI  LQ+K   LM+EN++L+QQ
Sbjct: 111 MRGEELQGLNIEELQQLERSLETGLSRVIERKGDKIMREINQLQQKGMHLMEENEKLRQQ 170

Query: 61  AEKM--------NGVRHLGV---EPEILV----VEDGQSSNSVTEVCVSNSNGPPQDLES 120
             ++        NG R  GV   EPE        EDGQSS SVT  C ++ + PPQD +S
Sbjct: 171 VMEISNNNNNNNNGYREAGVVIFEPENGFNNNNNEDGQSSESVTNPC-NSIDPPPQDDDS 230

[Close]

BLAST of Cucsat.G1823.T19 vs. ExPASy Swiss-Prot
Match: Q9FVC1 (MADS-box protein SVP OS=Arabidopsis thaliana OX=3702 GN=SVP PE=1 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 7.4e-23
Identity = 69/127 (54.33%), Postives = 86/127 (67.72%), Query Frame = 0


Query: 1   MRGEELQTLNIEELQQLEKSLESGLSRVMEKKGERIMKEITDLQRKSAELMDENKRLKQQ 60
           MRGEELQ L+IEELQQLEK+LE+GL+RV+E K ++IM EI++LQ+K  +LMDENKRL+QQ
Sbjct: 111 MRGEELQGLDIEELQQLEKALETGLTRVIETKSDKIMSEISELQKKGMQLMDENKRLRQQ 170

Query: 61  AEKM-------------NGVRHLGVEPE-ILVVEDGQSSNSVTEVCVSNSNGPPQDLESS 114
             ++             N   H G E E   V E+GQSS S+T     NS G P D ESS
Sbjct: 171 GTQLTEENERLGMQICNNVHAHGGAESENAAVYEEGQSSESITN--AGNSTGAPVDSESS 230

[Close]

BLAST of Cucsat.G1823.T19 vs. ExPASy Swiss-Prot
Match: Q5K4R0 (MADS-box transcription factor 47 OS=Oryza sativa subsp. japonica OX=39947 GN=MADS47 PE=1 SV=3)

HSP 1 Score: 89.0 bits (219), Expect = 4.6e-17
Identity = 57/116 (49.14%), Postives = 80/116 (68.97%), Query Frame = 0


Query: 1   MRGEELQTLNIEELQQLEKSLESGLSRVMEKKGERIMKEITDLQRKSAELMDENKRLKQQ 60
           MRGEEL  LN+E+LQ+LEKSLESGL  V++ K ++I+ EI  L+RK  +L++EN RLK+Q
Sbjct: 130 MRGEELHRLNVEQLQELEKSLESGLGSVLKTKSKKILDEIDGLERKRMQLIEENLRLKEQ 189

Query: 61  AE--KMNGVRHLGVEPEI-LVVEDGQSSNSVTEVCVSNSNGPPQDLESSDTSLKLG 114
            +  +M+ +  +   P+  +V E+GQSS SVT    S    PP +  SSDTSL+LG
Sbjct: 190 LQVSRMSRMEEMQPGPDSEIVYEEGQSSESVTN--ASYPRPPPDNDYSSDTSLRLG 243

[Close]

BLAST of Cucsat.G1823.T19 vs. ExPASy Swiss-Prot
Match: Q9XJ66 (MADS-box transcription factor 22 OS=Oryza sativa subsp. japonica OX=39947 GN=MADS22 PE=2 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 2.3e-16
Identity = 54/113 (47.79%), Postives = 77/113 (68.14%), Query Frame = 0


Query: 1   MRGEELQTLNIEELQQLEKSLESGLSRVMEKKGERIMKEITDLQRKSAELMDENKRLKQQ 60
           MRGEEL+ L+I+ELQQLEK+LE+GL RVM  K ++ M++I++LQRKS++L +EN +L+ Q
Sbjct: 110 MRGEELEGLSIDELQQLEKNLEAGLHRVMLTKDQQFMEQISELQRKSSQLAEENMQLRNQ 169

Query: 61  AEKMNGVRHLGVEPEILVVEDGQSSNSVTEVCVSNSNGPPQDLESSDTSLKLG 114
             +++      V+ E  V E GQSS SV     S S+    + + SD SLKLG
Sbjct: 170 VSQISPAEKQVVDTENFVTE-GQSSESVMTALHSGSSQSQDNDDGSDVSLKLG 221

[Close]

BLAST of Cucsat.G1823.T19 vs. ExPASy Swiss-Prot
Match: O82794 (MADS-box protein AGL24 OS=Arabidopsis thaliana OX=3702 GN=AGL24 PE=1 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 1.5e-15
Identity = 52/113 (46.02%), Postives = 75/113 (66.37%), Query Frame = 0


Query: 1   MRGEELQTLNIEELQQLEKSLESGLSRVMEKKGERIMKEITDLQRKSAELMDENKRLKQQ 60
           +RGE+L  LN+EELQ+LEK LESGLSRV EKKGE +M +I  L+++ +EL+DENKRL+ +
Sbjct: 111 LRGEDLDGLNLEELQRLEKLLESGLSRVSEKKGECVMSQIFSLEKRGSELVDENKRLRDK 170

Query: 61  AEKMNGVRHLGVEPEILVVEDGQSSNSVTEVCVSNSNGPPQDLESSDTSLKLG 114
            E +          ++  +++   + SVT    S  +G P + + SDTSLKLG
Sbjct: 171 LETLE-------RAKLTTLKEALETESVTTNVSSYDSGTPLE-DDSDTSLKLG 215

[Close]

BLAST of Cucsat.G1823.T19 vs. NCBI nr
Match: XP_008440538.1 (PREDICTED: MADS-box protein SVP-like [Cucumis melo] >XP_008440540.1 PREDICTED: MADS-box protein SVP-like [Cucumis melo])

HSP 1 Score: 208 bits (529), Expect = 2.58e-65
Identity = 113/113 (100.00%), Postives = 113/113 (100.00%), Query Frame = 0


Query: 1   MRGEELQTLNIEELQQLEKSLESGLSRVMEKKGERIMKEITDLQRKSAELMDENKRLKQQ 60
           MRGEELQTLNIEELQQLEKSLESGLSRVMEKKGERIMKEITDLQRKSAELMDENKRLKQQ
Sbjct: 111 MRGEELQTLNIEELQQLEKSLESGLSRVMEKKGERIMKEITDLQRKSAELMDENKRLKQQ 170

Query: 61  AEKMNGVRHLGVEPEILVVEDGQSSNSVTEVCVSNSNGPPQDLESSDTSLKLG 113
           AEKMNGVRHLGVEPEILVVEDGQSSNSVTEVCVSNSNGPPQDLESSDTSLKLG
Sbjct: 171 AEKMNGVRHLGVEPEILVVEDGQSSNSVTEVCVSNSNGPPQDLESSDTSLKLG 223

[Close]

BLAST of Cucsat.G1823.T19 vs. NCBI nr
Match: XP_004143442.1 (MADS-box protein SVP isoform X1 [Cucumis sativus] >XP_011657947.1 MADS-box protein SVP isoform X1 [Cucumis sativus] >KGN49102.2 hypothetical protein Csa_003741 [Cucumis sativus])

HSP 1 Score: 208 bits (529), Expect = 2.58e-65
Identity = 113/113 (100.00%), Postives = 113/113 (100.00%), Query Frame = 0


Query: 1   MRGEELQTLNIEELQQLEKSLESGLSRVMEKKGERIMKEITDLQRKSAELMDENKRLKQQ 60
           MRGEELQTLNIEELQQLEKSLESGLSRVMEKKGERIMKEITDLQRKSAELMDENKRLKQQ
Sbjct: 111 MRGEELQTLNIEELQQLEKSLESGLSRVMEKKGERIMKEITDLQRKSAELMDENKRLKQQ 170

Query: 61  AEKMNGVRHLGVEPEILVVEDGQSSNSVTEVCVSNSNGPPQDLESSDTSLKLG 113
           AEKMNGVRHLGVEPEILVVEDGQSSNSVTEVCVSNSNGPPQDLESSDTSLKLG
Sbjct: 171 AEKMNGVRHLGVEPEILVVEDGQSSNSVTEVCVSNSNGPPQDLESSDTSLKLG 223

[Close]

BLAST of Cucsat.G1823.T19 vs. NCBI nr
Match: XP_038883728.1 (MADS-box protein SVP-like [Benincasa hispida] >XP_038883729.1 MADS-box protein SVP-like [Benincasa hispida] >XP_038883730.1 MADS-box protein SVP-like [Benincasa hispida] >XP_038883731.1 MADS-box protein SVP-like [Benincasa hispida] >XP_038883732.1 MADS-box protein SVP-like [Benincasa hispida])

HSP 1 Score: 204 bits (518), Expect = 1.21e-63
Identity = 110/113 (97.35%), Postives = 112/113 (99.12%), Query Frame = 0


Query: 1   MRGEELQTLNIEELQQLEKSLESGLSRVMEKKGERIMKEITDLQRKSAELMDENKRLKQQ 60
           MRGEELQTLNIEELQQLEKSLESGLSRVMEKKGE+IMKEITDLQRKSAELMDENKRLKQQ
Sbjct: 111 MRGEELQTLNIEELQQLEKSLESGLSRVMEKKGEQIMKEITDLQRKSAELMDENKRLKQQ 170

Query: 61  AEKMNGVRHLGVEPEILVVEDGQSSNSVTEVCVSNSNGPPQDLESSDTSLKLG 113
           AEKMNGVRHLGVEPEILVVEDGQSSNSVT+ CVSNSNGPPQDLESSDTSLKLG
Sbjct: 171 AEKMNGVRHLGVEPEILVVEDGQSSNSVTDACVSNSNGPPQDLESSDTSLKLG 223

[Close]

BLAST of Cucsat.G1823.T19 vs. NCBI nr
Match: KAA0036343.1 (MADS-box protein SVP-like [Cucumis melo var. makuwa] >TYK12737.1 MADS-box protein SVP-like [Cucumis melo var. makuwa])

HSP 1 Score: 194 bits (493), Expect = 1.62e-59
Identity = 113/138 (81.88%), Postives = 113/138 (81.88%), Query Frame = 0


Query: 1   MRGEELQTLNIEELQQLEKSLESGLSRVMEKK-------------------------GER 60
           MRGEELQTLNIEELQQLEKSLESGLSRVMEKK                         GER
Sbjct: 111 MRGEELQTLNIEELQQLEKSLESGLSRVMEKKVFSLSSLLVRKSHFLLIYGSVFMSQGER 170

Query: 61  IMKEITDLQRKSAELMDENKRLKQQAEKMNGVRHLGVEPEILVVEDGQSSNSVTEVCVSN 113
           IMKEITDLQRKSAELMDENKRLKQQAEKMNGVRHLGVEPEILVVEDGQSSNSVTEVCVSN
Sbjct: 171 IMKEITDLQRKSAELMDENKRLKQQAEKMNGVRHLGVEPEILVVEDGQSSNSVTEVCVSN 230

[Close]

BLAST of Cucsat.G1823.T19 vs. NCBI nr
Match: XP_022962900.1 (MADS-box protein JOINTLESS-like [Cucurbita moschata] >XP_022962901.1 MADS-box protein JOINTLESS-like [Cucurbita moschata])

HSP 1 Score: 187 bits (474), Expect = 5.74e-57
Identity = 101/113 (89.38%), Postives = 109/113 (96.46%), Query Frame = 0


Query: 1   MRGEELQTLNIEELQQLEKSLESGLSRVMEKKGERIMKEITDLQRKSAELMDENKRLKQQ 60
           MRGEELQTLNI+ELQQLEKSLE GLSRVMEKKGE+IMKEITDLQRKSAEL++ENKRLK+Q
Sbjct: 111 MRGEELQTLNIDELQQLEKSLEFGLSRVMEKKGEKIMKEITDLQRKSAELVEENKRLKKQ 170

Query: 61  AEKMNGVRHLGVEPEILVVEDGQSSNSVTEVCVSNSNGPPQDLESSDTSLKLG 113
           AEKM+GVR+ GVEPEILVVEDGQSSNSVTE CV+NSNGP QDLESSDTSLKLG
Sbjct: 171 AEKMDGVRNFGVEPEILVVEDGQSSNSVTEACVTNSNGPAQDLESSDTSLKLG 223

[Close]

BLAST of Cucsat.G1823.T19 vs. ExPASy TrEMBL
Match: A0A0A0KIR9 (K-box domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G499000 PE=4 SV=1)

HSP 1 Score: 208 bits (529), Expect = 3.04e-66
Identity = 113/113 (100.00%), Postives = 113/113 (100.00%), Query Frame = 0


Query: 1   MRGEELQTLNIEELQQLEKSLESGLSRVMEKKGERIMKEITDLQRKSAELMDENKRLKQQ 60
           MRGEELQTLNIEELQQLEKSLESGLSRVMEKKGERIMKEITDLQRKSAELMDENKRLKQQ
Sbjct: 67  MRGEELQTLNIEELQQLEKSLESGLSRVMEKKGERIMKEITDLQRKSAELMDENKRLKQQ 126

Query: 61  AEKMNGVRHLGVEPEILVVEDGQSSNSVTEVCVSNSNGPPQDLESSDTSLKLG 113
           AEKMNGVRHLGVEPEILVVEDGQSSNSVTEVCVSNSNGPPQDLESSDTSLKLG
Sbjct: 127 AEKMNGVRHLGVEPEILVVEDGQSSNSVTEVCVSNSNGPPQDLESSDTSLKLG 179

[Close]

BLAST of Cucsat.G1823.T19 vs. ExPASy TrEMBL
Match: A0A1S3B1C2 (MADS-box protein SVP-like OS=Cucumis melo OX=3656 GN=LOC103484931 PE=4 SV=1)

HSP 1 Score: 208 bits (529), Expect = 1.25e-65
Identity = 113/113 (100.00%), Postives = 113/113 (100.00%), Query Frame = 0


Query: 1   MRGEELQTLNIEELQQLEKSLESGLSRVMEKKGERIMKEITDLQRKSAELMDENKRLKQQ 60
           MRGEELQTLNIEELQQLEKSLESGLSRVMEKKGERIMKEITDLQRKSAELMDENKRLKQQ
Sbjct: 111 MRGEELQTLNIEELQQLEKSLESGLSRVMEKKGERIMKEITDLQRKSAELMDENKRLKQQ 170

Query: 61  AEKMNGVRHLGVEPEILVVEDGQSSNSVTEVCVSNSNGPPQDLESSDTSLKLG 113
           AEKMNGVRHLGVEPEILVVEDGQSSNSVTEVCVSNSNGPPQDLESSDTSLKLG
Sbjct: 171 AEKMNGVRHLGVEPEILVVEDGQSSNSVTEVCVSNSNGPPQDLESSDTSLKLG 223

[Close]

BLAST of Cucsat.G1823.T19 vs. ExPASy TrEMBL
Match: A0A5D3CLB3 (MADS-box protein SVP-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G003250 PE=4 SV=1)

HSP 1 Score: 194 bits (493), Expect = 7.82e-60
Identity = 113/138 (81.88%), Postives = 113/138 (81.88%), Query Frame = 0


Query: 1   MRGEELQTLNIEELQQLEKSLESGLSRVMEKK-------------------------GER 60
           MRGEELQTLNIEELQQLEKSLESGLSRVMEKK                         GER
Sbjct: 111 MRGEELQTLNIEELQQLEKSLESGLSRVMEKKVFSLSSLLVRKSHFLLIYGSVFMSQGER 170

Query: 61  IMKEITDLQRKSAELMDENKRLKQQAEKMNGVRHLGVEPEILVVEDGQSSNSVTEVCVSN 113
           IMKEITDLQRKSAELMDENKRLKQQAEKMNGVRHLGVEPEILVVEDGQSSNSVTEVCVSN
Sbjct: 171 IMKEITDLQRKSAELMDENKRLKQQAEKMNGVRHLGVEPEILVVEDGQSSNSVTEVCVSN 230

[Close]

BLAST of Cucsat.G1823.T19 vs. ExPASy TrEMBL
Match: A0A6J1HEK8 (MADS-box protein JOINTLESS-like OS=Cucurbita moschata OX=3662 GN=LOC111463267 PE=4 SV=1)

HSP 1 Score: 187 bits (474), Expect = 2.78e-57
Identity = 101/113 (89.38%), Postives = 109/113 (96.46%), Query Frame = 0


Query: 1   MRGEELQTLNIEELQQLEKSLESGLSRVMEKKGERIMKEITDLQRKSAELMDENKRLKQQ 60
           MRGEELQTLNI+ELQQLEKSLE GLSRVMEKKGE+IMKEITDLQRKSAEL++ENKRLK+Q
Sbjct: 111 MRGEELQTLNIDELQQLEKSLEFGLSRVMEKKGEKIMKEITDLQRKSAELVEENKRLKKQ 170

Query: 61  AEKMNGVRHLGVEPEILVVEDGQSSNSVTEVCVSNSNGPPQDLESSDTSLKLG 113
           AEKM+GVR+ GVEPEILVVEDGQSSNSVTE CV+NSNGP QDLESSDTSLKLG
Sbjct: 171 AEKMDGVRNFGVEPEILVVEDGQSSNSVTEACVTNSNGPAQDLESSDTSLKLG 223

[Close]

BLAST of Cucsat.G1823.T19 vs. ExPASy TrEMBL
Match: A0A6J1KUX0 (MADS-box protein JOINTLESS-like OS=Cucurbita maxima OX=3661 GN=LOC111497438 PE=4 SV=1)

HSP 1 Score: 186 bits (473), Expect = 3.94e-57
Identity = 100/113 (88.50%), Postives = 108/113 (95.58%), Query Frame = 0


Query: 1   MRGEELQTLNIEELQQLEKSLESGLSRVMEKKGERIMKEITDLQRKSAELMDENKRLKQQ 60
           MRGEELQTLN +ELQQLEKSLE GLSRVMEKKGE+IMKEITDLQRKSAEL++ENKRLK+Q
Sbjct: 111 MRGEELQTLNTDELQQLEKSLEFGLSRVMEKKGEKIMKEITDLQRKSAELVEENKRLKKQ 170

Query: 61  AEKMNGVRHLGVEPEILVVEDGQSSNSVTEVCVSNSNGPPQDLESSDTSLKLG 113
           AEKM+GVRH GVEPEI+VVEDGQSSNSVTE CV+NSNGP QDLESSDTSLKLG
Sbjct: 171 AEKMDGVRHFGVEPEIVVVEDGQSSNSVTEACVTNSNGPAQDLESSDTSLKLG 223

[Close]

BLAST of Cucsat.G1823.T19 vs. TAIR 10
Match: AT2G22540.1 (K-box region and MADS-box transcription factor family protein )

HSP 1 Score: 108.2 bits (269), Expect = 5.2e-24
Identity = 69/127 (54.33%), Postives = 86/127 (67.72%), Query Frame = 0


Query: 1   MRGEELQTLNIEELQQLEKSLESGLSRVMEKKGERIMKEITDLQRKSAELMDENKRLKQQ 60
           MRGEELQ L+IEELQQLEK+LE+GL+RV+E K ++IM EI++LQ+K  +LMDENKRL+QQ
Sbjct: 111 MRGEELQGLDIEELQQLEKALETGLTRVIETKSDKIMSEISELQKKGMQLMDENKRLRQQ 170

Query: 61  AEKM-------------NGVRHLGVEPE-ILVVEDGQSSNSVTEVCVSNSNGPPQDLESS 114
             ++             N   H G E E   V E+GQSS S+T     NS G P D ESS
Sbjct: 171 GTQLTEENERLGMQICNNVHAHGGAESENAAVYEEGQSSESITN--AGNSTGAPVDSESS 230

[Close]

BLAST of Cucsat.G1823.T19 vs. TAIR 10
Match: AT2G22540.2 (K-box region and MADS-box transcription factor family protein )

HSP 1 Score: 108.2 bits (269), Expect = 5.2e-24
Identity = 69/127 (54.33%), Postives = 86/127 (67.72%), Query Frame = 0


Query: 1   MRGEELQTLNIEELQQLEKSLESGLSRVMEKKGERIMKEITDLQRKSAELMDENKRLKQQ 60
           MRGEELQ L+IEELQQLEK+LE+GL+RV+E K ++IM EI++LQ+K  +LMDENKRL+QQ
Sbjct: 106 MRGEELQGLDIEELQQLEKALETGLTRVIETKSDKIMSEISELQKKGMQLMDENKRLRQQ 165

Query: 61  AEKM-------------NGVRHLGVEPE-ILVVEDGQSSNSVTEVCVSNSNGPPQDLESS 114
             ++             N   H G E E   V E+GQSS S+T     NS G P D ESS
Sbjct: 166 GTQLTEENERLGMQICNNVHAHGGAESENAAVYEEGQSSESITN--AGNSTGAPVDSESS 225

[Close]

BLAST of Cucsat.G1823.T19 vs. TAIR 10
Match: AT4G24540.1 (AGAMOUS-like 24 )

HSP 1 Score: 84.0 bits (206), Expect = 1.1e-16
Identity = 52/113 (46.02%), Postives = 75/113 (66.37%), Query Frame = 0


Query: 1   MRGEELQTLNIEELQQLEKSLESGLSRVMEKKGERIMKEITDLQRKSAELMDENKRLKQQ 60
           +RGE+L  LN+EELQ+LEK LESGLSRV EKKGE +M +I  L+++ +EL+DENKRL+ +
Sbjct: 111 LRGEDLDGLNLEELQRLEKLLESGLSRVSEKKGECVMSQIFSLEKRGSELVDENKRLRDK 170

Query: 61  AEKMNGVRHLGVEPEILVVEDGQSSNSVTEVCVSNSNGPPQDLESSDTSLKLG 114
            E +          ++  +++   + SVT    S  +G P + + SDTSLKLG
Sbjct: 171 LETLE-------RAKLTTLKEALETESVTTNVSSYDSGTPLE-DDSDTSLKLG 215

[Close]

BLAST of Cucsat.G1823.T19 vs. TAIR 10
Match: AT3G02310.1 (K-box region and MADS-box transcription factor family protein )

HSP 1 Score: 50.1 bits (118), Expect = 1.7e-06
Identity = 40/112 (35.71%), Postives = 61/112 (54.46%), Query Frame = 0


Query: 3   GEELQTLNIEELQQLEKSLESGLSRVMEKKGERIMKEITDLQRKSAELMDENKRLKQQAE 62
           GE+L  LN +EL+QLE+ L+  L +V   K + ++ +++DLQ K   L+D N+ L  + E
Sbjct: 114 GEDLGPLNSKELEQLERQLDGSLKQVRCIKTQYMLDQLSDLQGKEHILLDANRALSMKLE 173

Query: 63  KMNGVRHLGVEPEILVVEDGQSSNSVTEVCVSNSNGPPQDLESSDTSLKLGY 115
            M GVRH  +       E G   N       ++S G  Q LE  D +L++GY
Sbjct: 174 DMIGVRHHHIGGG---WEGGDQQNIAYGHPQAHSQGLYQSLE-CDPTLQIGY 221

[Close]

BLAST of Cucsat.G1823.T19 vs. TAIR 10
Match: AT2G42830.1 (K-box region and MADS-box transcription factor family protein )

HSP 1 Score: 47.0 bits (110), Expect = 1.4e-05
Identity = 36/112 (32.14%), Postives = 54/112 (48.21%), Query Frame = 0


Query: 3   GEELQTLNIEELQQLEKSLESGLSRVMEKKGERIMKEITDLQRKSAELMDENKRLKQQAE 62
           GE L +LN +EL+ LE  LE G+SRV  KK E ++ EI  +Q++  EL ++N  L+ +  
Sbjct: 128 GESLGSLNFKELKNLESRLEKGISRVRSKKHEMLVAEIEYMQKREIELQNDNMYLRSKIT 187

Query: 63  KMNGVR-------HLGVEPEILVVEDGQSSNSVTEVCVSNSNGPPQDLESSD 108
           +  G++       H G   E  V    QS          N   P Q+  + D
Sbjct: 188 ERTGLQQQESSVIHQGTVYESGVTSSHQSGQYNRNYIAVNLLEPNQNSSNQD 239

The following BLAST results are available for this feature:

BLAST of Cucsat.G1823.T19 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FUY6	3.0e-24	54.07	MADS-box protein JOINTLESS OS=Solanum lycopersicum OX=4081 GN=J PE=1 SV=1	[more]
Q9FVC1	7.4e-23	54.33	MADS-box protein SVP OS=Arabidopsis thaliana OX=3702 GN=SVP PE=1 SV=1	[more]
Q5K4R0	4.6e-17	49.14	MADS-box transcription factor 47 OS=Oryza sativa subsp. japonica OX=39947 GN=MAD...	[more]
Q9XJ66	2.3e-16	47.79	MADS-box transcription factor 22 OS=Oryza sativa subsp. japonica OX=39947 GN=MAD...	[more]
O82794	1.5e-15	46.02	MADS-box protein AGL24 OS=Arabidopsis thaliana OX=3702 GN=AGL24 PE=1 SV=1	[more]

BLAST of Cucsat.G1823.T19 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008440538.1	2.58e-65	100.00	PREDICTED: MADS-box protein SVP-like [Cucumis melo] >XP_008440540.1 PREDICTED: M...	[more]
XP_004143442.1	2.58e-65	100.00	MADS-box protein SVP isoform X1 [Cucumis sativus] >XP_011657947.1 MADS-box prote...	[more]
XP_038883728.1	1.21e-63	97.35	MADS-box protein SVP-like [Benincasa hispida] >XP_038883729.1 MADS-box protein S...	[more]
KAA0036343.1	1.62e-59	81.88	MADS-box protein SVP-like [Cucumis melo var. makuwa] >TYK12737.1 MADS-box protei...	[more]
XP_022962900.1	5.74e-57	89.38	MADS-box protein JOINTLESS-like [Cucurbita moschata] >XP_022962901.1 MADS-box pr...	[more]

BLAST of Cucsat.G1823.T19 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KIR9	3.04e-66	100.00	K-box domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G499000 PE=4 ...	[more]
A0A1S3B1C2	1.25e-65	100.00	MADS-box protein SVP-like OS=Cucumis melo OX=3656 GN=LOC103484931 PE=4 SV=1	[more]
A0A5D3CLB3	7.82e-60	81.88	MADS-box protein SVP-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo...	[more]
A0A6J1HEK8	2.78e-57	89.38	MADS-box protein JOINTLESS-like OS=Cucurbita moschata OX=3662 GN=LOC111463267 PE...	[more]
A0A6J1KUX0	3.94e-57	88.50	MADS-box protein JOINTLESS-like OS=Cucurbita maxima OX=3661 GN=LOC111497438 PE=4...	[more]

BLAST of Cucsat.G1823.T19 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G22540.1	5.2e-24	54.33	K-box region and MADS-box transcription factor family protein	[more]
AT2G22540.2	5.2e-24	54.33	K-box region and MADS-box transcription factor family protein	[more]
AT4G24540.1	1.1e-16	46.02	AGAMOUS-like 24	[more]
AT3G02310.1	1.7e-06	35.71	K-box region and MADS-box transcription factor family protein	[more]
AT2G42830.1	1.4e-05	32.14	K-box region and MADS-box transcription factor family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (B10) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 33..67
None	No IPR available	COILS	Coil	Coil	coord: 11..31
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 88..107
None	No IPR available	PANTHER	PTHR48019:SF101	MADS-BOX PROTEIN SVP ISOFORM X1	coord: 1..115
None	No IPR available	PANTHER	PTHR48019	SERUM RESPONSE FACTOR HOMOLOG	coord: 1..115
IPR002487	Transcription factor, K-box	PFAM	PF01486	K-box	coord: 1..61 e-value: 4.5E-13 score: 49.2
IPR002487	Transcription factor, K-box	PROSITE	PS51297	K_BOX	coord: 1..67 score: 11.703597

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cucsat.G1823	Cucsat.G1823	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cucsat.G1823.T19.E1	Cucsat.G1823.T19.E1	exon
Cucsat.G1823.T19.E2	Cucsat.G1823.T19.E2	exon
Cucsat.G1823.T19.E3	Cucsat.G1823.T19.E3	exon
Cucsat.G1823.T19.E4	Cucsat.G1823.T19.E4	exon
Cucsat.G1823.T19.E5	Cucsat.G1823.T19.E5	exon
Cucsat.G1823.T19.E6	Cucsat.G1823.T19.E6	exon
Cucsat.G1823.T19.E7	Cucsat.G1823.T19.E7	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cucsat.G1823.T19.C4	Cucsat.G1823.T19.C4	CDS
Cucsat.G1823.T19.C3	Cucsat.G1823.T19.C3	CDS
Cucsat.G1823.T19.C2	Cucsat.G1823.T19.C2	CDS
Cucsat.G1823.T19.C1	Cucsat.G1823.T19.C1	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cucsat.G1823.T19	Cucsat.G1823.T19-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
biological_process	GO:0009910	negative regulation of flower development
biological_process	GO:0045892	negative regulation of transcription, DNA-templated
biological_process	GO:0017148	negative regulation of translation
biological_process	GO:0045944	positive regulation of transcription by RNA polymerase II
biological_process	GO:0009266	response to temperature stimulus
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003700	DNA-binding transcription factor activity
molecular_function	GO:0046983	protein dimerization activity
molecular_function	GO:0000977	RNA polymerase II transcription regulatory region sequence-specific DNA binding
molecular_function	GO:0000900	translation repressor activity, mRNA regulatory element binding