Cucsat.G1823 (gene) Cucumber (B10) v3

Overview
NameCucsat.G1823
Typegene
OrganismCucumis sativus L. var. sativus cv B10 (Cucumber (B10) v3)
DescriptionMADS-box protein SVP-like
Locationctg1002: 2846977 .. 2851895 (-)
RNA-Seq ExpressionCucsat.G1823
SyntenyCucsat.G1823
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ACTATAATAATTAACTTCTACTAGGGAAGGCTCCAATATTATATTTTACCGTCTATCCTCAACCTTTTACGGCAAAGTTTAGTTGATGAGTTGGAATTTTGCTTCTCCAGAAATGGAGACTTTCACTTGCTTTCAACTGTAGCCTCATTCTCTTGCCGCTACTCATTGGTGGCTTTCCATCTTTCTCAAAAAACCAACCCTAACCGGTAAGTCTATGCTTTAAATTCTACATTCATTTTCATTTCACTTCCAAACATCTTTCACGCATTTTCATTCTGCGCGGATTTTTCTTTTTCCCTTTTCTATGATCACATCCTTCTTCTTTTGGATCTGCGATTACGACTCCTTCTACCTTCTTCTTTCGCTCTCCAACACCTGATTCTTGCACAAATATGGAAATAATAATGTCGCTCTTCCATCTCTGCAACTCCGATTCTTGATATCCTCTTTGTTCTGTGTTTCTCTTTTATTTTTTTGCTATTTCTGGCTTGAATCATTCAATTGTTTGCTGGTTAGTTGGCCTCTTTACTGTTTGTTTTTACGAAACTAGAAATTTCTCTGACTGGAACTGTTTTATCTCAACTTTTTCTTGTTTTCTCTCAATTTTCTCACTGTTTCTTTTTCAGAAAGCAAGAGTAGTCATAAGAGGTTCAAATGGCGAAAGAGAAAATCCAGATCAGGAAGATCGATAACGCGACGGCGAGGCAGGTCACTTTCTCCAAGCGTCGGAGGGGACTTTTCAAGAAAGCCAAAGAGCTTTCCGTTTTATGCGATGCCGATGTGGCCCTCATTATCTTCTCTGCCACCGGAAAGCTGTTCGAGTACTCCAGCTCAAGGTTTCTCTCTGCTTCCCTCTCTCTCTCTCTTTTTTCTTTTTTATTGTAGAAACTAAAATTTTAATTTCTGAGTTCTTCTGCTTTTTCTGATACCTTAATTCCATATATAAAGGACACCATGTTACTAAAAATGGAGAAAACCGTGATAGAAATAAAGAGTAGAGCGAAGAAAACAAATGTATTTTGGTCACCACAATCTTACGGAAAAAACAAGAACAAATGAGAAAACATTAACTAATTCTTTAATGGATAAAAGAGGAAATTCTTGTAAAGTAGTGCCTAATAAAATTTGTCATAAACAAGCGGAAAAGGCTAAATGGAAACTATAAATCATGTCTCGAGCCTCGCCCTCTCACCAACAACGAGGTTTATGGTAATAGTGATGACTCAACTTTTCAGTCACTTAATTCTAACTTATTGCGGTTATTATAATGATGCTATGGTTGACACCTAGCTGATTTTGTTGATTATCTTTAAATTATATGGATTGAAGTGACGAACATGGATATTTGTTACTTTTAATTTCTTGACGGGTAGTCATTTCCTCCACTGACTATAGTATCTGTATTTGTATTTCTGAAGCATGAAGGGAATCATAGAAAGACATAATTTGCACTCTAAGAACCTTCAGAAATTGGAACAACCATCCCTTGAATTACAGGTTTGGCGTTTATTTTCCGGACATTTCCTATAAAAATGGTCATCATTTTTTTTTCTCTAACTGTTCTAAAAAGATACAAATTAATAATATTATTGTTGAAGCCGAAACCATAGTTTATGAATTTGTCATTTTAAACAGGAAAAAAATTATTTGTTTTAGGAACACAATTTACTGTGGAAATCAGTGAAAGACAAAACAAGGAAAAAAAAGTACAGTTATACAGCAGTTGTATTTCTTCGGCACAACAAATGTGCAATTGGAGACTGAACCTCCACTACTAGAGTAAAGTCACGTCAATTTGTTAATACCACTAAACCCAGCTGACTATACTATAGCACACCTAAAAATTGATTTTTATTGTATAAAATCGAAAGCATTTTTTATGTTTTTCTTAATAAGCACGGTGCAAAATTACTTTTCTCATCCTGAAGTTTAGTTTGTATTCTATTTAACTAGTAGATTATGCACAGCAATACATTAGTTATCCAGTACGCTATTTTTTCTGAACGCTGTGTCTTCAGAATTTTAAATTTGTTAGCTTATATTGGTGTCACTTGTAACATTTTCATTTTCTATTTATTGAATTTTGAATAACTACTTCGACTCTCTCGAATCTGTATGTAGATTCCAGAAAGAACACGGTCAAGAGAAGGGTAAAAGGTTTATATTTGGGTCAAGCTTATTTTTGTAACACAATAAAATACTTCACTCGTCATTCGTCCTGAACGGACAAAAATCAATATTAAAAAAAGAGATCTTTAGTTTATTATATTTGTAACTTAAGGACTTGTTTATTTTAGTCAATATCGTGGTCACCTCTCATTGGTTTACTGAATATTGCTTACACTGTCGATGATTTCAGCTGGTAGAAAACAGCAATTACACCCGATTAAACAAGGAAATTGCTGAAAAAACTCATCAACTAAGGTATCTCTAGTTTTACACCAGAAGTTATATTTTCTTTTCCTTTTGAATCTTAAACTCATCAGCAATTACTATAATAGAAAGAGGTGAATTTTGAATCTTACACCTAAAGGGAATAAATAGTTATTTAAAATTATTTGCCTTGGGCTACACCCATTTTTTCACCCCACCCCACCCACACGCAGCAGAAAAACGTTAATAAAAAAATTGAAAAGGAAAAGGGGAAATTTGCATGTGGCAAACTATAGTTGAATGGGTGTAGCATAGCTATCAATTATGCTGTCTTTTTTAATTAAAAAAATTGGAAGGGGTTTTGCCCACTTATTTTTTAAGTTGTATGAATTATGATATAACTTAACCATCTTGTATTTCTTTGGCTTACACCTTTTTCAATAAATTTTATCTTCACAATTCTACCATCCAAACATAGGCTTCTTAACACCAACTACATAACCTAAAACTTTATATCATCATTGCATTTCACCAAAGACTTCATAACATCATTTAACGTGCATTCACCAAGATGTTTTATTTCTGTTTTCAAATATTTTATTTTAATTTATGTGTGTAATGAAAGTGAGATACATTCAAGATGGATGCCATTCCAAATGCATTAAAGTATTATACATTTAAAATGTAAAACTTAGGAGATGTACTAGAATAAAAATGAGGTTTTATTTTATCCACTTAGAAGATGTACTTCAATAGTTGAATACATGATTTAATTTGATTCCTTCACCTGAATACATAGTATAGTTAAGTACACCTTTCAATCTGTCCTCTTTATAAAAAAATAAACATAAAAAAAGGAAAATTTATTGGCTGTGTGAGACTCTTTTTATTGGTAGCGGTTGTCTAATAGCGTTGGATACATTTAATTATTTAGATTTGGATGTTTTGGTTTCTAAATTTAATCATTTTTTACGTTTTTGTTTACTTGATTTTGTAGTTAGGTTTGAGTGTTTTCATGATTAGGTATGGACATTCATTCTTCTGCCTGTTGGTTTCGTGGTTAGGTTTTAGTGTTATTGTGTCTAGGAGACGTACGGCATTTCTATTTCTACCATATTATTTTGGTCTTGTATTTCACACGATTATTAGTTTTGAGGAGGTATTCATTATAACATTCTAAAGAAACTTCAAAGGTTTGAATTGATGGAGTTGGATTATTAATTGAAAAATCAAGACATGTTCACGTAAATAAAGGCTATGGATTGGTTTGGTCTTTTCTCTTGTACTTACTAGATGGAACAAGAGAAATTGTAGATACTTTTTGTCGCATTTCAGAGATTGACAGACTACATTGGCCTCTTATTCAAACAAAATTCTCACTCACATAGTACTACACGATAGATCAGAGCATTTACACGAACACGATTAAATTTGATGACAATCTAGGCAGATGAGGGGTGAGGAACTTCAAACATTGAATATAGAGGAATTGCAGCAGTTGGAGAAGTCACTGGAGTCTGGATTGAGCCGTGTGATGGAGAAAAAGGTATTTTCCCTTTCCTTGCCGTTGGTAAAAAAATCCTATTTTCTTCTCAGATATGGTTCCGTTTTTATGTCCCAGGGTGAACGGATCATGAAAGAGATCACTGACCTTCAAAGAAAGGTTAAGTTCTACCTTCAAATAACTAAGGCTATTGCCAAAAGACCCGTTTTAGGAGAATTTAAGTACTTGATAATAATATCATGTATGTAATTTAGTTATATTCATGAATATCTTTTTTATGTTTATATTTATAAGCATGTGGTTTTTCATCAATGATACAAATTTTGTAATCTTTTTTCATATCATCGGATGTAAATAGCTTGTGCCATTACTCTCGTAAATACGAATGAATATGCTGCTTATTGTTTAATTATCAGATGAGGAATGAATATGAATATGCTATTTATTACTAAATTCAAAGTTTTATATATATGCAGTCGGCCGAGCTGATGGATGAGAATAAGCGATTGAAACAACAAGTAAGAAGCCTATTCCACAGCTTACTAATATAAAATGTGTCCTTGAAATCCATTCGTAACTTACAGACGTGGAGGTTTGCAGGCGGAGAAAATGAATGGCGTAAGGCACCTGGGCGTAGAGCCCGAGATTTTGGTCGTGGAGGATGGCCAGTCGTCGAATTCCGTCACTGAAGTTTGTGTTTCCAACTCCAATGGCCCGCCTCAAGATCTGGAAAGCTCAGACACATCTCTTAAATTAGGGTACCGTCGTTGCATAAAAATTGATTTAAAATTATGTTCTACTGATGTTCATTTAGACTGGCGAAGTTTAGTATGATCGAGAGAATCCAATTGTGTGATTGCAGGCTGCCGTATTCCGGATGATGGTGACGATCGATGATCGAACAAGAAGATGAACAGGTACTGTAGCTAGCAAAAATGGTAGTGTGTAAAAGTAATTATACTCTAAAATTCGGGTTAAGTTTGGTAATTGAAATCTAAATCTAACCCATGTCATCTTCATTATCCAATTCACATGACTCCCATTGAAATCTGAAAACAGGGTTGCATTCAAAGAATTCAATGCACCGTTTTAATGAATCAAATTAGAATGCAAGTGGGCTTTTGATAAAGCCTTGGCCACTCCTATGGTATGTGCGTGTAGTCGTAGTTTTGGGGTAATGACTTAACGATGGCGGTTTTCCTGGTGACAACGCCCTTGTTTTGTTAAACAGGGTTTAAGTCACTTTTAGTTTAAACAAACAACACGTGTTAATACTTTGGGATGTGTTAGGTTTAAGGTTTTATAGATGCAAGGATGTCTCCTTTTTTTTTTTTTTATTGAAGGGCTCTTAACTAGTTTTGTTGTGCATGGAAAATAAAACTATGTACGTGTTTAATATATAAAATTAGGTATGAAAATCTTATAAAAATTCAATAGATTAATTAACTGAAAAT

Coding sequence (CDS)

ATGGCGAAAGAGAAAATCCAGATCAGGAAGATCGATAACGCGACGGCGAGGCAGGTCACTTTCTCCAAGCGTCGGAGGGGACTTTTCAAGAAAGCCAAAGAGCTTTCCGTTTTATGCGATGCCGATGTGGCCCTCATTATCTTCTCTGCCACCGGAAAGCTGTTCGAGTACTCCAGCTCAAGCATGAAGGGAATCATAGAAAGACATAATTTGCACTCTAAGAACCTTCAGAAATTGGAACAACCATCCCTTGAATTACAGCTGGTAGAAAACAGCAATTACACCCGATTAAACAAGGAAATTGCTGAAAAAACTCATCAACTAAGGCAGATGAGGGGTGAGGAACTTCAAACATTGAATATAGAGGAATTGCAGCAGTTGGAGAAGTCACTGGAGTCTGGATTGAGCCGTGTGATGGAGAAAAAGGGTGAACGGATCATGAAAGAGATCACTGACCTTCAAAGAAAGTCGGCCGAGCTGATGGATGAGAATAAGCGATTGAAACAACAAGCGGAGAAAATGAATGGCGTAAGGCACCTGGGCGTAGAGCCCGAGATTTTGGTCGTGGAGGATGGCCAGTCGTCGAATTCCGTCACTGAAGTTTGTGTTTCCAACTCCAATGGCCCGCCTCAAGATCTGGAAAGCTCAGACACATCTCTTAAATTAGGGCTGCCGTATTCCGGATGA

Protein sequence

MAKEKIQIRKIDNATARQVTFSKRRRGLFKKAKELSVLCDADVALIIFSATGKLFEYSSSSMKGIIERHNLHSKNLQKLEQPSLELQLVENSNYTRLNKEIAEKTHQLRQMRGEELQTLNIEELQQLEKSLESGLSRVMEKKGERIMKEITDLQRKSAELMDENKRLKQQAEKMNGVRHLGVEPEILVVEDGQSSNSVTEVCVSNSNGPPQDLESSDTSLKLGLPYSG
Homology
[Close]
BLAST of Cucsat.G1823 vs. ExPASy Swiss-Prot
Match: Q9FUY6 (MADS-box protein JOINTLESS OS=Solanum lycopersicum OX=4081 GN=J PE=1 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 1.8e-20
Identity = 73/160 (45.62%), Postives = 94/160 (58.75%), Query Frame = 0 

Query: 1   MRGEELQTLNIEELQQLEKSLESGLSRVMEKKVFSLSLPLVKKSYFLLRYGSVFMSQGER 60
           MRGEELQ LNIEELQQLE+SLE+GLSRV+E+K                         G++
Sbjct: 111 MRGEELQGLNIEELQQLERSLETGLSRVIERK-------------------------GDK 170

Query: 61  IMKEITDLQRKSAELMDENKRLKQQAEKM--------NGVRHLGV---EPEILV----VE 120
           IM+EI  LQ+K   LM+EN++L+QQ  ++        NG R  GV   EPE        E
Sbjct: 171 IMREINQLQQKGMHLMEENEKLRQQVMEISNNNNNNNNGYREAGVVIFEPENGFNNNNNE 230

Query: 121 DGQSSNSVTEVCVSNSNGPPQDLESSDTSLKLGYRRCIKI 146
           DGQSS SVT  C ++ + PPQD +SSDTSLKLG    +++
Sbjct: 231 DGQSSESVTNPC-NSIDPPPQDDDSSDTSLKLGLATLLRL 244

[Close]
BLAST of Cucsat.G1823 vs. ExPASy Swiss-Prot
Match: Q9FVC1 (MADS-box protein SVP OS=Arabidopsis thaliana OX=3702 GN=SVP PE=1 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 4.5e-19
Identity = 69/152 (45.39%), Postives = 86/152 (56.58%), Query Frame = 0 

Query: 1   MRGEELQTLNIEELQQLEKSLESGLSRVMEKKVFSLSLPLVKKSYFLLRYGSVFMSQGER 60
           MRGEELQ L+IEELQQLEK+LE+GL+RV+E K                          ++
Sbjct: 111 MRGEELQGLDIEELQQLEKALETGLTRVIETK-------------------------SDK 170

Query: 61  IMKEITDLQRKSAELMDENKRLKQQAEKM-------------NGVRHLGVEPE-ILVVED 120
           IM EI++LQ+K  +LMDENKRL+QQ  ++             N   H G E E   V E+
Sbjct: 171 IMSEISELQKKGMQLMDENKRLRQQGTQLTEENERLGMQICNNVHAHGGAESENAAVYEE 230

Query: 121 GQSSNSVTEVCVSNSNGPPQDLESSDTSLKLG 139
           GQSS S+T     NS G P D ESSDTSL+LG
Sbjct: 231 GQSSESITN--AGNSTGAPVDSESSDTSLRLG 235

[Close]
BLAST of Cucsat.G1823 vs. ExPASy Swiss-Prot
Match: Q5K4R0 (MADS-box transcription factor 47 OS=Oryza sativa subsp. japonica OX=39947 GN=MADS47 PE=1 SV=3)

HSP 1 Score: 79.3 bits (194), Expect = 4.3e-14
Identity = 58/141 (41.13%), Postives = 81/141 (57.45%), Query Frame = 0 

Query: 1   MRGEELQTLNIEELQQLEKSLESGLSRVMEKKVFSLSLPLVKKSYFLLRYGSVFMSQGER 60
           MRGEEL  LN+E+LQ+LEKSLESGL                         GSV  ++ ++
Sbjct: 130 MRGEELHRLNVEQLQELEKSLESGL-------------------------GSVLKTKSKK 189

Query: 61  IMKEITDLQRKSAELMDENKRLKQQAE--KMNGVRHLGVEPEI-LVVEDGQSSNSVTEVC 120
           I+ EI  L+RK  +L++EN RLK+Q +  +M+ +  +   P+  +V E+GQSS SVT   
Sbjct: 190 ILDEIDGLERKRMQLIEENLRLKEQLQVSRMSRMEEMQPGPDSEIVYEEGQSSESVTN-- 243

Query: 121 VSNSNGPPQDLESSDTSLKLG 139
            S    PP +  SSDTSL+LG
Sbjct: 250 ASYPRPPPDNDYSSDTSLRLG 243

[Close]
BLAST of Cucsat.G1823 vs. ExPASy Swiss-Prot
Match: Q9XJ66 (MADS-box transcription factor 22 OS=Oryza sativa subsp. japonica OX=39947 GN=MADS22 PE=2 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 4.8e-13
Identity = 53/138 (38.41%), Postives = 79/138 (57.25%), Query Frame = 0 

Query: 1   MRGEELQTLNIEELQQLEKSLESGLSRVMEKKVFSLSLPLVKKSYFLLRYGSVFMSQGER 60
           MRGEEL+ L+I+ELQQLEK+LE+GL RVM                         +++ ++
Sbjct: 110 MRGEELEGLSIDELQQLEKNLEAGLHRVM-------------------------LTKDQQ 169

Query: 61  IMKEITDLQRKSAELMDENKRLKQQAEKMNGVRHLGVEPEILVVEDGQSSNSVTEVCVSN 120
            M++I++LQRKS++L +EN +L+ Q  +++      V+ E  V E GQSS SV     S 
Sbjct: 170 FMEQISELQRKSSQLAEENMQLRNQVSQISPAEKQVVDTENFVTE-GQSSESVMTALHSG 221

Query: 121 SNGPPQDLESSDTSLKLG 139
           S+    + + SD SLKLG
Sbjct: 230 SSQSQDNDDGSDVSLKLG 221

[Close]
BLAST of Cucsat.G1823 vs. ExPASy Swiss-Prot
Match: Q69TG5 (MADS-box transcription factor 55 OS=Oryza sativa subsp. japonica OX=39947 GN=MADS55 PE=2 SV=2)

HSP 1 Score: 72.4 bits (176), Expect = 5.3e-12
Identity = 51/138 (36.96%), Postives = 76/138 (55.07%), Query Frame = 0 

Query: 1   MRGEELQTLNIEELQQLEKSLESGLSRVMEKKVFSLSLPLVKKSYFLLRYGSVFMSQGER 60
           MRGEEL+ L++EELQQ+EK+LE+GL RV+                          ++ ++
Sbjct: 133 MRGEELEGLSVEELQQMEKNLEAGLQRVL-------------------------CTKDQQ 192

Query: 61  IMKEITDLQRKSAELMDENKRLKQQAEKMNGVRHLGVEPEILVVEDGQSSNSVTEVCVSN 120
            M+EI++LQRK  +L +EN RL+ Q  ++        + E ++ EDGQSS SV  +   N
Sbjct: 193 FMQEISELQRKGIQLAEENMRLRDQMPQVPTAGLAVPDTENVLTEDGQSSESV--MTALN 243

Query: 121 SNGPPQDLESSDTSLKLG 139
           S     + + SD SLKLG
Sbjct: 253 SGSSQDNDDGSDISLKLG 243

[Close]
BLAST of Cucsat.G1823 vs. NCBI nr
Match: KAA0036343.1 (MADS-box protein SVP-like [Cucumis melo var. makuwa] >TYK12737.1 MADS-box protein SVP-like [Cucumis melo var. makuwa])

HSP 1 Score: 245 bits (625), Expect = 4.07e-79
Identity = 133/138 (96.38%), Postives = 135/138 (97.83%), Query Frame = 0 

Query: 1   MRGEELQTLNIEELQQLEKSLESGLSRVMEKKVFSLSLPLVKKSYFLLRYGSVFMSQGER 60
           MRGEELQTLNIEELQQLEKSLESGLSRVMEKKVFSLS  LV+KS+FLL YGSVFMSQGER
Sbjct: 111 MRGEELQTLNIEELQQLEKSLESGLSRVMEKKVFSLSSLLVRKSHFLLIYGSVFMSQGER 170

Query: 61  IMKEITDLQRKSAELMDENKRLKQQAEKMNGVRHLGVEPEILVVEDGQSSNSVTEVCVSN 120
           IMKEITDLQRKSAELMDENKRLKQQAEKMNGVRHLGVEPEILVVEDGQSSNSVTEVCVSN
Sbjct: 171 IMKEITDLQRKSAELMDENKRLKQQAEKMNGVRHLGVEPEILVVEDGQSSNSVTEVCVSN 230

Query: 121 SNGPPQDLESSDTSLKLG 138
           SNGPPQDLESSDTSLKLG
Sbjct: 231 SNGPPQDLESSDTSLKLG 248

[Close]
BLAST of Cucsat.G1823 vs. NCBI nr
Match: XP_008440538.1 (PREDICTED: MADS-box protein SVP-like [Cucumis melo] >XP_008440540.1 PREDICTED: MADS-box protein SVP-like [Cucumis melo])

HSP 1 Score: 196 bits (499), Expect = 2.46e-60
Identity = 113/138 (81.88%), Postives = 113/138 (81.88%), Query Frame = 0 

Query: 1   MRGEELQTLNIEELQQLEKSLESGLSRVMEKKVFSLSLPLVKKSYFLLRYGSVFMSQGER 60
           MRGEELQTLNIEELQQLEKSLESGLSRVMEKK                         GER
Sbjct: 111 MRGEELQTLNIEELQQLEKSLESGLSRVMEKK-------------------------GER 170

Query: 61  IMKEITDLQRKSAELMDENKRLKQQAEKMNGVRHLGVEPEILVVEDGQSSNSVTEVCVSN 120
           IMKEITDLQRKSAELMDENKRLKQQAEKMNGVRHLGVEPEILVVEDGQSSNSVTEVCVSN
Sbjct: 171 IMKEITDLQRKSAELMDENKRLKQQAEKMNGVRHLGVEPEILVVEDGQSSNSVTEVCVSN 223

Query: 121 SNGPPQDLESSDTSLKLG 138
           SNGPPQDLESSDTSLKLG
Sbjct: 231 SNGPPQDLESSDTSLKLG 223

[Close]
BLAST of Cucsat.G1823 vs. NCBI nr
Match: XP_004143442.1 (MADS-box protein SVP isoform X1 [Cucumis sativus] >XP_011657947.1 MADS-box protein SVP isoform X1 [Cucumis sativus] >KGN49102.2 hypothetical protein Csa_003741 [Cucumis sativus])

HSP 1 Score: 196 bits (499), Expect = 2.46e-60
Identity = 113/138 (81.88%), Postives = 113/138 (81.88%), Query Frame = 0 

Query: 1   MRGEELQTLNIEELQQLEKSLESGLSRVMEKKVFSLSLPLVKKSYFLLRYGSVFMSQGER 60
           MRGEELQTLNIEELQQLEKSLESGLSRVMEKK                         GER
Sbjct: 111 MRGEELQTLNIEELQQLEKSLESGLSRVMEKK-------------------------GER 170

Query: 61  IMKEITDLQRKSAELMDENKRLKQQAEKMNGVRHLGVEPEILVVEDGQSSNSVTEVCVSN 120
           IMKEITDLQRKSAELMDENKRLKQQAEKMNGVRHLGVEPEILVVEDGQSSNSVTEVCVSN
Sbjct: 171 IMKEITDLQRKSAELMDENKRLKQQAEKMNGVRHLGVEPEILVVEDGQSSNSVTEVCVSN 223

Query: 121 SNGPPQDLESSDTSLKLG 138
           SNGPPQDLESSDTSLKLG
Sbjct: 231 SNGPPQDLESSDTSLKLG 223

[Close]
BLAST of Cucsat.G1823 vs. NCBI nr
Match: XP_038883728.1 (MADS-box protein SVP-like [Benincasa hispida] >XP_038883729.1 MADS-box protein SVP-like [Benincasa hispida] >XP_038883730.1 MADS-box protein SVP-like [Benincasa hispida] >XP_038883731.1 MADS-box protein SVP-like [Benincasa hispida] >XP_038883732.1 MADS-box protein SVP-like [Benincasa hispida])

HSP 1 Score: 192 bits (488), Expect = 1.15e-58
Identity = 110/138 (79.71%), Postives = 112/138 (81.16%), Query Frame = 0 

Query: 1   MRGEELQTLNIEELQQLEKSLESGLSRVMEKKVFSLSLPLVKKSYFLLRYGSVFMSQGER 60
           MRGEELQTLNIEELQQLEKSLESGLSRVMEKK                         GE+
Sbjct: 111 MRGEELQTLNIEELQQLEKSLESGLSRVMEKK-------------------------GEQ 170

Query: 61  IMKEITDLQRKSAELMDENKRLKQQAEKMNGVRHLGVEPEILVVEDGQSSNSVTEVCVSN 120
           IMKEITDLQRKSAELMDENKRLKQQAEKMNGVRHLGVEPEILVVEDGQSSNSVT+ CVSN
Sbjct: 171 IMKEITDLQRKSAELMDENKRLKQQAEKMNGVRHLGVEPEILVVEDGQSSNSVTDACVSN 223

Query: 121 SNGPPQDLESSDTSLKLG 138
           SNGPPQDLESSDTSLKLG
Sbjct: 231 SNGPPQDLESSDTSLKLG 223

[Close]
BLAST of Cucsat.G1823 vs. NCBI nr
Match: XP_022962900.1 (MADS-box protein JOINTLESS-like [Cucurbita moschata] >XP_022962901.1 MADS-box protein JOINTLESS-like [Cucurbita moschata])

HSP 1 Score: 175 bits (444), Expect = 5.30e-52
Identity = 101/138 (73.19%), Postives = 109/138 (78.99%), Query Frame = 0 

Query: 1   MRGEELQTLNIEELQQLEKSLESGLSRVMEKKVFSLSLPLVKKSYFLLRYGSVFMSQGER 60
           MRGEELQTLNI+ELQQLEKSLE GLSRVMEKK                         GE+
Sbjct: 111 MRGEELQTLNIDELQQLEKSLEFGLSRVMEKK-------------------------GEK 170

Query: 61  IMKEITDLQRKSAELMDENKRLKQQAEKMNGVRHLGVEPEILVVEDGQSSNSVTEVCVSN 120
           IMKEITDLQRKSAEL++ENKRLK+QAEKM+GVR+ GVEPEILVVEDGQSSNSVTE CV+N
Sbjct: 171 IMKEITDLQRKSAELVEENKRLKKQAEKMDGVRNFGVEPEILVVEDGQSSNSVTEACVTN 223

Query: 121 SNGPPQDLESSDTSLKLG 138
           SNGP QDLESSDTSLKLG
Sbjct: 231 SNGPAQDLESSDTSLKLG 223

[Close]
BLAST of Cucsat.G1823 vs. ExPASy TrEMBL
Match: A0A5D3CLB3 (MADS-box protein SVP-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G003250 PE=4 SV=1)

HSP 1 Score: 245 bits (625), Expect = 1.97e-79
Identity = 133/138 (96.38%), Postives = 135/138 (97.83%), Query Frame = 0 

Query: 1   MRGEELQTLNIEELQQLEKSLESGLSRVMEKKVFSLSLPLVKKSYFLLRYGSVFMSQGER 60
           MRGEELQTLNIEELQQLEKSLESGLSRVMEKKVFSLS  LV+KS+FLL YGSVFMSQGER
Sbjct: 111 MRGEELQTLNIEELQQLEKSLESGLSRVMEKKVFSLSSLLVRKSHFLLIYGSVFMSQGER 170

Query: 61  IMKEITDLQRKSAELMDENKRLKQQAEKMNGVRHLGVEPEILVVEDGQSSNSVTEVCVSN 120
           IMKEITDLQRKSAELMDENKRLKQQAEKMNGVRHLGVEPEILVVEDGQSSNSVTEVCVSN
Sbjct: 171 IMKEITDLQRKSAELMDENKRLKQQAEKMNGVRHLGVEPEILVVEDGQSSNSVTEVCVSN 230

Query: 121 SNGPPQDLESSDTSLKLG 138
           SNGPPQDLESSDTSLKLG
Sbjct: 231 SNGPPQDLESSDTSLKLG 248

[Close]
BLAST of Cucsat.G1823 vs. ExPASy TrEMBL
Match: A0A0A0KIR9 (K-box domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G499000 PE=4 SV=1)

HSP 1 Score: 196 bits (499), Expect = 2.96e-61
Identity = 113/138 (81.88%), Postives = 113/138 (81.88%), Query Frame = 0 

Query: 1   MRGEELQTLNIEELQQLEKSLESGLSRVMEKKVFSLSLPLVKKSYFLLRYGSVFMSQGER 60
           MRGEELQTLNIEELQQLEKSLESGLSRVMEKK                         GER
Sbjct: 67  MRGEELQTLNIEELQQLEKSLESGLSRVMEKK-------------------------GER 126

Query: 61  IMKEITDLQRKSAELMDENKRLKQQAEKMNGVRHLGVEPEILVVEDGQSSNSVTEVCVSN 120
           IMKEITDLQRKSAELMDENKRLKQQAEKMNGVRHLGVEPEILVVEDGQSSNSVTEVCVSN
Sbjct: 127 IMKEITDLQRKSAELMDENKRLKQQAEKMNGVRHLGVEPEILVVEDGQSSNSVTEVCVSN 179

Query: 121 SNGPPQDLESSDTSLKLG 138
           SNGPPQDLESSDTSLKLG
Sbjct: 187 SNGPPQDLESSDTSLKLG 179

[Close]
BLAST of Cucsat.G1823 vs. ExPASy TrEMBL
Match: A0A1S3B1C2 (MADS-box protein SVP-like OS=Cucumis melo OX=3656 GN=LOC103484931 PE=4 SV=1)

HSP 1 Score: 196 bits (499), Expect = 1.19e-60
Identity = 113/138 (81.88%), Postives = 113/138 (81.88%), Query Frame = 0 

Query: 1   MRGEELQTLNIEELQQLEKSLESGLSRVMEKKVFSLSLPLVKKSYFLLRYGSVFMSQGER 60
           MRGEELQTLNIEELQQLEKSLESGLSRVMEKK                         GER
Sbjct: 111 MRGEELQTLNIEELQQLEKSLESGLSRVMEKK-------------------------GER 170

Query: 61  IMKEITDLQRKSAELMDENKRLKQQAEKMNGVRHLGVEPEILVVEDGQSSNSVTEVCVSN 120
           IMKEITDLQRKSAELMDENKRLKQQAEKMNGVRHLGVEPEILVVEDGQSSNSVTEVCVSN
Sbjct: 171 IMKEITDLQRKSAELMDENKRLKQQAEKMNGVRHLGVEPEILVVEDGQSSNSVTEVCVSN 223

Query: 121 SNGPPQDLESSDTSLKLG 138
           SNGPPQDLESSDTSLKLG
Sbjct: 231 SNGPPQDLESSDTSLKLG 223

[Close]
BLAST of Cucsat.G1823 vs. ExPASy TrEMBL
Match: A0A6J1HEK8 (MADS-box protein JOINTLESS-like OS=Cucurbita moschata OX=3662 GN=LOC111463267 PE=4 SV=1)

HSP 1 Score: 175 bits (444), Expect = 2.56e-52
Identity = 101/138 (73.19%), Postives = 109/138 (78.99%), Query Frame = 0 

Query: 1   MRGEELQTLNIEELQQLEKSLESGLSRVMEKKVFSLSLPLVKKSYFLLRYGSVFMSQGER 60
           MRGEELQTLNI+ELQQLEKSLE GLSRVMEKK                         GE+
Sbjct: 111 MRGEELQTLNIDELQQLEKSLEFGLSRVMEKK-------------------------GEK 170

Query: 61  IMKEITDLQRKSAELMDENKRLKQQAEKMNGVRHLGVEPEILVVEDGQSSNSVTEVCVSN 120
           IMKEITDLQRKSAEL++ENKRLK+QAEKM+GVR+ GVEPEILVVEDGQSSNSVTE CV+N
Sbjct: 171 IMKEITDLQRKSAELVEENKRLKKQAEKMDGVRNFGVEPEILVVEDGQSSNSVTEACVTN 223

Query: 121 SNGPPQDLESSDTSLKLG 138
           SNGP QDLESSDTSLKLG
Sbjct: 231 SNGPAQDLESSDTSLKLG 223

[Close]
BLAST of Cucsat.G1823 vs. ExPASy TrEMBL
Match: A0A6J1KUX0 (MADS-box protein JOINTLESS-like OS=Cucurbita maxima OX=3661 GN=LOC111497438 PE=4 SV=1)

HSP 1 Score: 175 bits (443), Expect = 3.63e-52
Identity = 100/138 (72.46%), Postives = 108/138 (78.26%), Query Frame = 0 

Query: 1   MRGEELQTLNIEELQQLEKSLESGLSRVMEKKVFSLSLPLVKKSYFLLRYGSVFMSQGER 60
           MRGEELQTLN +ELQQLEKSLE GLSRVMEKK                         GE+
Sbjct: 111 MRGEELQTLNTDELQQLEKSLEFGLSRVMEKK-------------------------GEK 170

Query: 61  IMKEITDLQRKSAELMDENKRLKQQAEKMNGVRHLGVEPEILVVEDGQSSNSVTEVCVSN 120
           IMKEITDLQRKSAEL++ENKRLK+QAEKM+GVRH GVEPEI+VVEDGQSSNSVTE CV+N
Sbjct: 171 IMKEITDLQRKSAELVEENKRLKKQAEKMDGVRHFGVEPEIVVVEDGQSSNSVTEACVTN 223

Query: 121 SNGPPQDLESSDTSLKLG 138
           SNGP QDLESSDTSLKLG
Sbjct: 231 SNGPAQDLESSDTSLKLG 223

[Close]
BLAST of Cucsat.G1823 vs. TAIR 10
Match: AT2G22540.1 (K-box region and MADS-box transcription factor family protein )

HSP 1 Score: 95.9 bits (237), Expect = 3.2e-20
Identity = 69/152 (45.39%), Postives = 86/152 (56.58%), Query Frame = 0 

Query: 1   MRGEELQTLNIEELQQLEKSLESGLSRVMEKKVFSLSLPLVKKSYFLLRYGSVFMSQGER 60
           MRGEELQ L+IEELQQLEK+LE+GL+RV+E K                          ++
Sbjct: 111 MRGEELQGLDIEELQQLEKALETGLTRVIETK-------------------------SDK 170

Query: 61  IMKEITDLQRKSAELMDENKRLKQQAEKM-------------NGVRHLGVEPE-ILVVED 120
           IM EI++LQ+K  +LMDENKRL+QQ  ++             N   H G E E   V E+
Sbjct: 171 IMSEISELQKKGMQLMDENKRLRQQGTQLTEENERLGMQICNNVHAHGGAESENAAVYEE 230

Query: 121 GQSSNSVTEVCVSNSNGPPQDLESSDTSLKLG 139
           GQSS S+T     NS G P D ESSDTSL+LG
Sbjct: 231 GQSSESITN--AGNSTGAPVDSESSDTSLRLG 235

[Close]
BLAST of Cucsat.G1823 vs. TAIR 10
Match: AT2G22540.2 (K-box region and MADS-box transcription factor family protein )

HSP 1 Score: 95.9 bits (237), Expect = 3.2e-20
Identity = 69/152 (45.39%), Postives = 86/152 (56.58%), Query Frame = 0 

Query: 1   MRGEELQTLNIEELQQLEKSLESGLSRVMEKKVFSLSLPLVKKSYFLLRYGSVFMSQGER 60
           MRGEELQ L+IEELQQLEK+LE+GL+RV+E K                          ++
Sbjct: 106 MRGEELQGLDIEELQQLEKALETGLTRVIETK-------------------------SDK 165

Query: 61  IMKEITDLQRKSAELMDENKRLKQQAEKM-------------NGVRHLGVEPE-ILVVED 120
           IM EI++LQ+K  +LMDENKRL+QQ  ++             N   H G E E   V E+
Sbjct: 166 IMSEISELQKKGMQLMDENKRLRQQGTQLTEENERLGMQICNNVHAHGGAESENAAVYEE 225

Query: 121 GQSSNSVTEVCVSNSNGPPQDLESSDTSLKLG 139
           GQSS S+T     NS G P D ESSDTSL+LG
Sbjct: 226 GQSSESITN--AGNSTGAPVDSESSDTSLRLG 230

[Close]
BLAST of Cucsat.G1823 vs. TAIR 10
Match: AT4G24540.1 (AGAMOUS-like 24 )

HSP 1 Score: 72.0 bits (175), Expect = 4.9e-13
Identity = 52/138 (37.68%), Postives = 75/138 (54.35%), Query Frame = 0 

Query: 1   MRGEELQTLNIEELQQLEKSLESGLSRVMEKKVFSLSLPLVKKSYFLLRYGSVFMSQGER 60
           +RGE+L  LN+EELQ+LEK LESGLSRV EKK                         GE 
Sbjct: 111 LRGEDLDGLNLEELQRLEKLLESGLSRVSEKK-------------------------GEC 170

Query: 61  IMKEITDLQRKSAELMDENKRLKQQAEKMNGVRHLGVEPEILVVEDGQSSNSVTEVCVSN 120
           +M +I  L+++ +EL+DENKRL+ + E +          ++  +++   + SVT    S 
Sbjct: 171 VMSQIFSLEKRGSELVDENKRLRDKLETLE-------RAKLTTLKEALETESVTTNVSSY 215

Query: 121 SNGPPQDLESSDTSLKLG 139
            +G P + + SDTSLKLG
Sbjct: 231 DSGTPLE-DDSDTSLKLG 215

The following BLAST results are available for this feature:
BLAST of Cucsat.G1823 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9FUY61.8e-2045.63MADS-box protein JOINTLESS OS=Solanum lycopersicum OX=4081 GN=J PE=1 SV=1[more]
Q9FVC14.5e-1945.39MADS-box protein SVP OS=Arabidopsis thaliana OX=3702 GN=SVP PE=1 SV=1[more]
Q5K4R04.3e-1441.13MADS-box transcription factor 47 OS=Oryza sativa subsp. japonica OX=39947 GN=MAD... [more]
Q9XJ664.8e-1338.41MADS-box transcription factor 22 OS=Oryza sativa subsp. japonica OX=39947 GN=MAD... [more]
Q69TG55.3e-1236.96MADS-box transcription factor 55 OS=Oryza sativa subsp. japonica OX=39947 GN=MAD... [more]
BLAST of Cucsat.G1823 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0036343.14.07e-7996.38MADS-box protein SVP-like [Cucumis melo var. makuwa] >TYK12737.1 MADS-box protei... [more]
XP_008440538.12.46e-6081.88PREDICTED: MADS-box protein SVP-like [Cucumis melo] >XP_008440540.1 PREDICTED: M... [more]
XP_004143442.12.46e-6081.88MADS-box protein SVP isoform X1 [Cucumis sativus] >XP_011657947.1 MADS-box prote... [more]
XP_038883728.11.15e-5879.71MADS-box protein SVP-like [Benincasa hispida] >XP_038883729.1 MADS-box protein S... [more]
XP_022962900.15.30e-5273.19MADS-box protein JOINTLESS-like [Cucurbita moschata] >XP_022962901.1 MADS-box pr... [more]
BLAST of Cucsat.G1823 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3CLB31.97e-7996.38MADS-box protein SVP-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo... [more]
A0A0A0KIR92.96e-6181.88K-box domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G499000 PE=4 ... [more]
A0A1S3B1C21.19e-6081.88MADS-box protein SVP-like OS=Cucumis melo OX=3656 GN=LOC103484931 PE=4 SV=1[more]
A0A6J1HEK82.56e-5273.19MADS-box protein JOINTLESS-like OS=Cucurbita moschata OX=3662 GN=LOC111463267 PE... [more]
A0A6J1KUX03.63e-5272.46MADS-box protein JOINTLESS-like OS=Cucurbita maxima OX=3661 GN=LOC111497438 PE=4... [more]
BLAST of Cucsat.G1823 vs. TAIR 10
Match NameE-valueIdentityDescription
AT2G22540.13.2e-2045.39K-box region and MADS-box transcription factor family protein [more]
AT2G22540.23.2e-2045.39K-box region and MADS-box transcription factor family protein [more]
AT4G24540.14.9e-1337.68AGAMOUS-like 24 [more]
InterPro
Analysis Name: InterPro Annotations of Cucumber (B10) v3
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 94..114
NoneNo IPR availableCOILSCoilCoilcoord: 168..202
NoneNo IPR availableCOILSCoilCoilcoord: 121..141
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 217..244
NoneNo IPR availablePANTHERPTHR48019:SF101MADS-BOX PROTEIN SVP ISOFORM X1coord: 163..250
NoneNo IPR availablePANTHERPTHR48019SERUM RESPONSE FACTOR HOMOLOGcoord: 1..142
coord: 163..250
NoneNo IPR availablePANTHERPTHR48019:SF101MADS-BOX PROTEIN SVP ISOFORM X1coord: 1..142
IPR002100Transcription factor, MADS-boxPRINTSPR00404MADSDOMAINcoord: 38..59
score: 62.84
coord: 3..23
score: 52.46
coord: 23..38
score: 77.22
IPR002100Transcription factor, MADS-boxSMARTSM00432madsneu2coord: 1..60
e-value: 3.0E-38
score: 143.1
IPR002100Transcription factor, MADS-boxPFAMPF00319SRF-TFcoord: 10..57
e-value: 3.7E-25
score: 87.2
IPR002100Transcription factor, MADS-boxPROSITEPS50066MADS_BOX_2coord: 1..61
score: 29.828545
IPR002487Transcription factor, K-boxPFAMPF01486K-boxcoord: 92..196
e-value: 3.5E-14
score: 52.8
IPR002487Transcription factor, K-boxPROSITEPS51297K_BOXcoord: 87..202
score: 10.670011
IPR036879Transcription factor, MADS-box superfamilyGENE3D3.40.1810.10coord: 13..83
e-value: 1.2E-28
score: 100.7
IPR036879Transcription factor, MADS-box superfamilySUPERFAMILY55455SRF-likecoord: 3..85
IPR033896MADS MEF2-likeCDDcd00265MADS_MEF2_likecoord: 2..77
e-value: 4.58177E-40
score: 131.135

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cucsat.G1823.T2Cucsat.G1823.T2mRNA
Cucsat.G1823.T1Cucsat.G1823.T1mRNA
Cucsat.G1823.T4Cucsat.G1823.T4mRNA
Cucsat.G1823.T7Cucsat.G1823.T7mRNA
Cucsat.G1823.T8Cucsat.G1823.T8mRNA
Cucsat.G1823.T11Cucsat.G1823.T11mRNA
Cucsat.G1823.T20Cucsat.G1823.T20mRNA
Cucsat.G1823.T10Cucsat.G1823.T10mRNA
Cucsat.G1823.T3Cucsat.G1823.T3mRNA
Cucsat.G1823.T14Cucsat.G1823.T14mRNA
Cucsat.G1823.T6Cucsat.G1823.T6mRNA
Cucsat.G1823.T5Cucsat.G1823.T5mRNA
Cucsat.G1823.T12Cucsat.G1823.T12mRNA
Cucsat.G1823.T15Cucsat.G1823.T15mRNA
Cucsat.G1823.T13Cucsat.G1823.T13mRNA
Cucsat.G1823.T17Cucsat.G1823.T17mRNA
Cucsat.G1823.T18Cucsat.G1823.T18mRNA
Cucsat.G1823.T19Cucsat.G1823.T19mRNA
Cucsat.G1823.T16Cucsat.G1823.T16mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009910 negative regulation of flower development
biological_process GO:0045892 negative regulation of transcription, DNA-templated
biological_process GO:0017148 negative regulation of translation
biological_process GO:0045944 positive regulation of transcription by RNA polymerase II
biological_process GO:0009266 response to temperature stimulus
biological_process GO:0006355 regulation of transcription, DNA-templated
cellular_component GO:0005634 nucleus
molecular_function GO:0003700 DNA-binding transcription factor activity
molecular_function GO:0046983 protein dimerization activity
molecular_function GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding
molecular_function GO:0000900 translation repressor activity, mRNA regulatory element binding
molecular_function GO:0003677 DNA binding