Cucsat.G18215.T2 (mRNA) Cucumber (B10) v3
Overview
Sequences
The following sequences are available for this feature:
Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.AATAAAGTCCATTGTTTCATTGATGGATTAATTAATTCTTGCAATATTCACCACCCATTGACTACCAATTTGCAGATGTACTAATCTTTATTGTTTTCGTTTATTTTCTGATGCAGAAGGACTTAGATTCTTTGATGACATAGCTTTAAGAAAATGGAAATGAAGATGGGAGACAAGGGAAAACTCTAACATGTGAGTGATTCAGAAGAAGTTTATTTAAATCCAGTGTAGAAGTAAGATGATCTTTGTCTGTTTACTAAAAGAAAATTGTGGGGGTTTGAAAGATTTTAACGAGAAAATGGCAAAAAAAAAAAAAACGTAGTTAAGAAAAAGATGAATATTTTAATCTCTGCTGGTTTTTGTTGAAAATTTGAAAATAACCCATTTACGTGTGTTGAACAAGACTGTTGCTTTTTGGGGTCGTGAGAGAAAAGATGGAAAGAAAATAAGAGGGTCTGTAGATCTAATTAAACCATCAAAAGATACCAACATTCTACCATACTCTCTCAACCTCTTTTTTCTTCTTTTGCTTAATCTCTCATTAATTTTTGGGCGACCAGTTTTGGTGTGATTTCTTCAATCTTATAAATTCATCAAAACCAATGATTGATTGCAATTAGCTTCAACTCCGAGTATTATTAGTATTCAATCCTTCACGAACAATCGTTGGCGTACATTTGTGGTAGAAATAGGGATCTGGGTATACCATAACATCGTCTGATTTTGCCGACATTCTTGTTCTTTGTGGTTTATTGTTGTAAAATCGCATCTGGGTACGAGTGGTTCTTTGATTTTCTGTGATAGATTGCTATAAACATTGAGTTTTTTTTTTTTTTACAATCATTTCGATTTGCGTTTTGGGTTTTCAATCTCCCTGTTTGTAGTGATGGCGGGGAATGGGTTGTTTTACCCGATTCTTGGATTCGCATCCTGTTTGGCTTTCATTTACTTGTCGTTTGGAGATTTGAGGATTGGGGACACTAAAGTAATCCCCATAGTAGATTTTGTAGAGAGGAACGGAACGCAGTTCATGTTGAACGGGAAGGCGTTTTATATTAATGGATGGAATTCTTATTGGTTTATGGACCATTCCGTTGAGGAATATAGAAAGCCTAGAATCAGAGCCATGCTGCAGGCGGCGAGAAAGATGGGGCTTACTGTTTGCCGGACTTGGGCTTTCAATGATGGTGGTTACAATGCCCTTCAGGTTTCTCCCGGAAGGTTTAACGAGCGAGTCTTTAAGGTATTGATTGAGCTGCATTTTCTGAGATTTCTGCTGTTTCTGTGATTGGATTCTTCATTTATTTGATTCTACTCTTAATGCTTTGGTTTTGTGTTCGTAATTTGTTTCTTTTTCTGAAATTTTATGGCAATGTCTGTTTTAGAGAGAGATGAGTGATTCTGCAGGGTTTGAAAGGTTCCATTGGCCAAAGAATGCAAAGCTTGGATGCTTCCACCGACAGAAAAACTGTGTCGGTAGTCATAAAACAATATGGAATTATTTTGTGAATCGCATGATTTTCTTGGAAAAGAAACGGTAGTTCTTGCCATTATGGTTAAGATGAATGAATTAGACTGAAGACAATAAATTATCTGTCAGTTCCTTTTGGCATTTAAAGGTGGATTAATTGAGTATGATTTAAATTCTCATGTTCTGTAACCCCAATAAGAAGCATTATAACTTGTATTTCTGTGGAAGATCAATCTGGTTTTGTTTGTTATCTTGTCAATATAGTTTCAAGTTCAAAAAATGAAGACTGGAATTCATGGAAGAACCAGAAAACTTTCTATTTCCATCTATCTCGCTTTCTCTTTTTGAGAAATATAAGGATAAATGACACATTATCCAAAAAATACACAAGAAAGCATATGTTTGTATATATTTTTTCCATAGCAATTGTTTAGTTTGATGGCGTTTTTTATTTGCGCAAATGCATATGTGAAGTTGTGCTGTTATCAGCTTACGTTTCAATTGGTCCTTCCTGGTGGCAGGCTTTGGATCATGTCATTGCAGAATCAAGGCAGCATGGGATAAGACTTCTTCTTAGCTTAGTTAACAACTTGCAAGCATACGGTGGGAAGACTCAGTATGTGAAGTGGGCATGGCAAGATGGTGTTGGTTTAAGCTCTTCCAATGATTCCTTCTTTTATGATCCATCAATACGCATTTATTTTAAAAATTATCTCAAGGTACATTCCTTATTTATCAATGAGTTTGTCCAATATGTTTCATAACATTGATGATTTGGTATGCATCCTGAGCTATGCCATGGATTCAAATATATTGATCCAATTGCTATTTACCATTGCATAAGCCATTAGTTCTCGGGTTCAAACAAAAATTCTTACCCTTGTCTTTGCAGATCTTACATTGCTAAATTCTACCTTATGGTGTTTTAGTGGTTCTAATGTGCACTATATTTTTCACTTTGTCAGACCGTCCTGACAAGAAAGAATTCTATCACTGGAATTGAATATAGAAATGATCCCACCATCTTTGGATGGGAATTGATTAATGAGCCACGTTGCATGACCGATGCTTCAGGCGATACACTTCAAGTAAGTTTTAAGATTTTGGTTCTTCTGATTTCTGAATGCTGAACCAAATGAGAATTGAAATAAATGGATTCTGGTGTACTCCCCAATTAAGTTGTAAGATTTTGATTCTTCTTGCTTCTAAATGTTAAACCAAAGGAAAACTAACCCTCATTGAACTTACTGTACTCCCGTTTGAGTCTTTTGATAGCTCACTTTTGTAATTTGGGATTGTTACGCAACTTTCTTTCTTCCAAACTTTTTCTTGTGAAAGTTATGAGCTCTCTACTTGGTATTTCTCAACCTCAACTTTGCTTCAAGTTGATTTCTCTAAAGCAAAGTTGCGTTTATTTTTCACCATGTTTTAAGTGTATTTTACCAGAATTAACTCAACGTCTAAAACGAACCTACCAGTCCCAATGTGGAATATATCTTTATCAGTTAATGGCAGAAGCAATATTCACAAATGGACTCATTTTGACCTTGTGTTTGATCCTAATATATGTTTCTCAAGATTTTTGTAAGTATGACCCAATCCTATAGACACTAATGTAGAATGACCCAATCCTAAATAATCAATGAAAACTAACCTTCAGTTGACGTCACATAGCACACTATCGCATTAGAGACATCCCTCCATTCGCAAAATAGTCGGTGCCCTAATGCAATTCATTTCAATAGCAATGTTTCTTTTTAATCAACAGTTGTCCAATCAGCAATGATCTAAAGAAACATCATATTGAAATGAATATCGGTGACTATTTTGCAATGGGTAAGACGTCTTGTTGCAAAAAGAAGTTTCGAGCAGTAGAGTGCTTTGTGATGTTAGTTGAAGGTTCGTTTTCATTGGTTTTTAGGATAGAGTCATTTCACATCAATGCTGCCACCAGGATTGGGTCATCAAATCTCTTGTTTCTCTTCCCACCCCCCACCCCCAAGGGAAGAAAAGAAAAAAGCATCGTTTCTATATCTATGCATAAGCTTATTTTGAGGAATAAAATTTGTAGGAATGGATTGAAGAAATGACAGCTTACATTAAATCGATTGACAAGAAACATCTGCTGACTGTTGGGTTGGAAGGATTTTATGGTCCAAATAGCCCGAAGAAATCTACTGTGAACCCGGAAGAGTGGGCATCAAGACTTGGATCGGATTTCATCCGCAATTCTGAGATCCAACACGTGGATTTTGCCTCTGTTCATATCTACCCCGACCATTGGTAAGCATTGATGAATCTCAGTTTAAAACTTGGATGGCAATCGTCAATGATTCTACTCATGTCCATGCTCTTAAACCTGTTATTTACATAACCACATTAACATTCTGTGTCGATTAGGTTCCACGATCAAGATTTCGAAGATGAACTGAAATTTGTCTCCAAGTGGATGCTCTCCCATATTGAAGATGGTGACAAAGAGTTGAAGAAGCCAGTCATGTTTACTGAATTTGGACTGTCAGATCTGAACAAGGGCTTCACCCCAGCTCAACGGGATAGTTTTTACAAAACCGTTTACGACGTCATTTACAAATCTGCCAAGAGGAATAGATCAGGAGCTGGCTCCTTAGCATGGCAGTTCCTTGTGGAAGGAATGGAAGAGAGTAATGATGATTTCGGGATCGTCCCGTGGGAAAGATCGTCGATATATCAGCTTATTATAGAGCAATCATGCAGGTTGGCAAGAATTGGTGGAGATACCCAACAGCTAAAAGCATTGAAGTATGTGTGTGCTCAGAGATGGTGATCTGACTATATCTTATTTGAGAGAATTCAATTTGTTCACTTGCTGCTATATTTTGCCTCTGTGCCCTTCGTTTCTTCTGTTGATACATATTCAGAATAGATTAGGTAGTTTTAACATATAGTATTGAGTTTCACATGAACTGCTACAAGCTGTAATGTTTTTTGAGCAAATATATAAGTCATAAATCTATTTTATTTTACTTTTCAA ATGACAGCTTACATTAAATCGATTGACAAGAAACATCTGCTGACTGTTGGGTTGGAAGGATTTTATGGTCCAAATAGCCCGAAGAAATCTACTGTGAACCCGGAAGAGTGGGCATCAAGACTTGGATCGGATTTCATCCGCAATTCTGAGATCCAACACGTGGATTTTGCCTCTGTTCATATCTACCCCGACCATTGGTTCCACGATCAAGATTTCGAAGATGAACTGAAATTTGTCTCCAAGTGGATGCTCTCCCATATTGAAGATGGTGACAAAGAGTTGAAGAAGCCAGTCATGTTTACTGAATTTGGACTGTCAGATCTGAACAAGGGCTTCACCCCAGCTCAACGGGATAGTTTTTACAAAACCGTTTACGACGTCATTTACAAATCTGCCAAGAGGAATAGATCAGGAGCTGGCTCCTTAGCATGGCAGTTCCTTGTGGAAGGAATGGAAGAGAGTAATGATGATTTCGGGATCGTCCCGTGGGAAAGATCGTCGATATATCAGCTTATTATAGAGCAATCATGCAGGTTGGCAAGAATTGGTGGAGATACCCAACAGCTAAAAGCATTGAAGTATGTGTGTGCTCAGAGATGGTGA MTAYIKSIDKKHLLTVGLEGFYGPNSPKKSTVNPEEWASRLGSDFIRNSEIQHVDFASVHIYPDHWFHDQDFEDELKFVSKWMLSHIEDGDKELKKPVMFTEFGLSDLNKGFTPAQRDSFYKTVYDVIYKSAKRNRSGAGSLAWQFLVEGMEESNDDFGIVPWERSSIYQLIIEQSCRLARIGGDTQQLKALKYVCAQRW Homology
BLAST of Cucsat.G18215.T2 vs. ExPASy Swiss-Prot
Match: Q7Y223 (Mannan endo-1,4-beta-mannosidase 2 OS=Arabidopsis thaliana OX=3702 GN=MAN2 PE=2 SV=1) HSP 1 Score: 319.7 bits (818), Expect = 2.3e-86 Identity = 148/199 (74.37%), Postives = 171/199 (85.93%), Query Frame = 0
BLAST of Cucsat.G18215.T2 vs. ExPASy Swiss-Prot
Match: Q9M0H6 (Mannan endo-1,4-beta-mannosidase 5 OS=Arabidopsis thaliana OX=3702 GN=MAN5 PE=2 SV=1) HSP 1 Score: 298.1 bits (762), Expect = 7.3e-80 Identity = 136/199 (68.34%), Postives = 167/199 (83.92%), Query Frame = 0
BLAST of Cucsat.G18215.T2 vs. ExPASy Swiss-Prot
Match: Q0JJD4 (Mannan endo-1,4-beta-mannosidase 2 OS=Oryza sativa subsp. japonica OX=39947 GN=MAN2 PE=2 SV=2) HSP 1 Score: 231.9 bits (590), Expect = 6.4e-60 Identity = 111/200 (55.50%), Postives = 146/200 (73.00%), Query Frame = 0
BLAST of Cucsat.G18215.T2 vs. ExPASy Swiss-Prot
Match: Q0DCM5 (Mannan endo-1,4-beta-mannosidase 6 OS=Oryza sativa subsp. japonica OX=39947 GN=MAN6 PE=2 SV=2) HSP 1 Score: 195.3 bits (495), Expect = 6.7e-49 Identity = 92/188 (48.94%), Postives = 126/188 (67.02%), Query Frame = 0
BLAST of Cucsat.G18215.T2 vs. ExPASy Swiss-Prot
Match: Q9FJZ3 (Mannan endo-1,4-beta-mannosidase 7 OS=Arabidopsis thaliana OX=3702 GN=MAN7 PE=2 SV=1) HSP 1 Score: 177.6 bits (449), Expect = 1.4e-43 Identity = 83/182 (45.60%), Postives = 116/182 (63.74%), Query Frame = 0
BLAST of Cucsat.G18215.T2 vs. NCBI nr
Match: XP_004139946.1 (mannan endo-1,4-beta-mannosidase 2 [Cucumis sativus] >KGN46738.1 hypothetical protein Csa_021081 [Cucumis sativus]) HSP 1 Score: 418 bits (1074), Expect = 4.17e-144 Identity = 200/200 (100.00%), Postives = 200/200 (100.00%), Query Frame = 0
BLAST of Cucsat.G18215.T2 vs. NCBI nr
Match: XP_008448293.1 (PREDICTED: mannan endo-1,4-beta-mannosidase 2 [Cucumis melo] >TYK04966.1 mannan endo-1,4-beta-mannosidase 2 [Cucumis melo var. makuwa]) HSP 1 Score: 410 bits (1053), Expect = 6.46e-141 Identity = 197/200 (98.50%), Postives = 197/200 (98.50%), Query Frame = 0
BLAST of Cucsat.G18215.T2 vs. NCBI nr
Match: KAA0062055.1 (mannan endo-1,4-beta-mannosidase 2 [Cucumis melo var. makuwa]) HSP 1 Score: 409 bits (1050), Expect = 1.85e-140 Identity = 196/200 (98.00%), Postives = 197/200 (98.50%), Query Frame = 0
BLAST of Cucsat.G18215.T2 vs. NCBI nr
Match: XP_038902035.1 (mannan endo-1,4-beta-mannosidase 2-like [Benincasa hispida]) HSP 1 Score: 398 bits (1022), Expect = 3.30e-136 Identity = 191/200 (95.50%), Postives = 193/200 (96.50%), Query Frame = 0
BLAST of Cucsat.G18215.T2 vs. NCBI nr
Match: XP_023512795.1 (mannan endo-1,4-beta-mannosidase 2-like isoform X2 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 392 bits (1008), Expect = 7.73e-135 Identity = 188/196 (95.92%), Postives = 191/196 (97.45%), Query Frame = 0
BLAST of Cucsat.G18215.T2 vs. ExPASy TrEMBL
Match: A0A0A0KB35 (Mannan endo-1,4-beta-mannosidase OS=Cucumis sativus OX=3659 GN=Csa_6G127990 PE=3 SV=1) HSP 1 Score: 418 bits (1074), Expect = 2.02e-144 Identity = 200/200 (100.00%), Postives = 200/200 (100.00%), Query Frame = 0
BLAST of Cucsat.G18215.T2 vs. ExPASy TrEMBL
Match: A0A5D3C3G0 (Mannan endo-1,4-beta-mannosidase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold143G001850 PE=3 SV=1) HSP 1 Score: 410 bits (1053), Expect = 3.13e-141 Identity = 197/200 (98.50%), Postives = 197/200 (98.50%), Query Frame = 0
BLAST of Cucsat.G18215.T2 vs. ExPASy TrEMBL
Match: A0A1S3BJC2 (Mannan endo-1,4-beta-mannosidase OS=Cucumis melo OX=3656 GN=LOC103490531 PE=3 SV=1) HSP 1 Score: 410 bits (1053), Expect = 3.13e-141 Identity = 197/200 (98.50%), Postives = 197/200 (98.50%), Query Frame = 0
BLAST of Cucsat.G18215.T2 vs. ExPASy TrEMBL
Match: A0A5A7V836 (Mannan endo-1,4-beta-mannosidase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold89G003960 PE=3 SV=1) HSP 1 Score: 409 bits (1050), Expect = 8.94e-141 Identity = 196/200 (98.00%), Postives = 197/200 (98.50%), Query Frame = 0
BLAST of Cucsat.G18215.T2 vs. ExPASy TrEMBL
Match: A0A6J1FWH9 (Mannan endo-1,4-beta-mannosidase OS=Cucurbita moschata OX=3662 GN=LOC111448802 PE=3 SV=1) HSP 1 Score: 391 bits (1004), Expect = 1.52e-134 Identity = 187/196 (95.41%), Postives = 191/196 (97.45%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucumber (B10) v3
Date Performed: 2021-10-25
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
|