Cucsat.G17949.T12 (mRNA) Cucumber (B10) v3
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATCATTAGGGAATTAAGCCCTTGTCTGGCGCCCTCACCCGCTTCCAAGGTTCATCCCAATCGTTGGCTCCTCGGTCTCTACCATAACACACAACTCTTTTCGATCTCTTTCAACTCTTAATAGCCCATTCTCTAAACCGATCGATTCTGGGTTTTTGTGTTCATTGCCTTGACGGCCTCAGGTACCTTTTTTTTTTTGCATTAATTATAGGTTTTGAACCCTAAATTCTGGTTTTGTTTGCCAGTTTTCTTTTGCCGAAATGTAGTTTTTTCTTTTTTTTTGTGTGTATTTTTCCATGGAGATTAGCTACTGAGGCCCTTCCATTGTGTGCCAAACCTCAGGAAATTTGTGGCGGAGCCTTCTAACTTGTCAACGGAGTCATTCATTGGCGTTCTAAATGGCCAAAAAAGCGACACCAACTACCACAACGTATTCTCCGTCTCCTACTGTCCACAAAACCAGGCCATCCCTCTTCAGAACCGATGACGTCAACTGGGTTCGCCCCGATGGCCGTGGCTTCCATCAATGCCGCCCTGCTTGTATGTCTATCTTGCCCATTTCTGTTTTTCTCATTTGCTCTGTCTTGCTGCTTTTCACATTATATCGTTATGTTATTGTTTCATTTAATGTCTATTTGAGGTTATTGTTTCTAATTGCTGCTAGTTCGAGGTTATTGTTCTCGATCAGTTTATCATAAGTACTAAGCACCCTCGCATTATTTCTGCTGTCTCAATCTTGTGACCACGTTATCAAATTTGCTCTGTATTTGTATGCTTATGATGTCTTTTCCATGATGATGGTCCTGTTGAGGATCCCACGTGGAGATAGATGAGCTACTTCTCCCACTCCCAATTTATTTTGAGAGATGGAGCCACGTTATCTAATAGGCTTGAGAATCGTTGTTTATCTAATAGCCATGTTATCTTAGTTTATTGATGGAAAAATTGGTTGATGCCATGATCTTAATAAATAAGCGTTAACTGAGAAGTAGGAAATGACATGGTTAAGAATGTGTTATCTTGTCTTTCGACATTGAAGTCTAACTGGAAGATTCTCCCTTTGATTCGATTCAGTTAGTAGTTGATCATAGAGTCCTTGAGGATTTTGAACATATGTTGTTTTACTTGGTGGTTTTGACATTTCTGTTGTTAAGTCTTGGACAAATATCATCTGTTTAGAAACCAAACTTGTCATTCCTTTGCAGTTTTCAGGACTGGAGCTGTAAATGCTGCTTCAGGATCTGCTTATGCAGAATTCGGTAATACCAAGGTCATTGTTTCTGTGTAAGTTCTAGCTTACCTCCGACTCCAAGTATGTGCTCTTTGTGACTTCTAGGTTTCTCTTTGATGATGAGAGTTTGAGCACCAGTGCCTAATCCAATTGGTTGCCCATTTGATGAACTTGCTATTCCTTTCCTTTAATCATTTAAATCATTTGCTACTTTTTTGCAGTATTTTGTGTCCAGTTTCCTTTCTTTATTCAAATGCTGTATTCTTTGCATCAGATTTGGCCCCCGAGAAAGTAAGAAAGCAATGATGTACAGTGATATTGGCCGGCTCAATTGTAGTGTTAGTTATACAACATTTTCCACTCCAGTTCGTGGACAGGTGTGAAGATACTCCTCTTCTTCTATTTAGTTTATATCTTTTTACTGTTGTCATTTGACTATCTCATTTTGTCTTGACTTCATTTGTTAGGGATCGGAAAACAAGGACTTCTCCTCAATGTTACATAAATCTTTGGAAGGGGCAATAATATTGGAATCATTCCCCAAAACAACAGTGGACGTATTTGCCTTGGTGTTGGAATCTGGAGGCAGTAAGTATAGGATTTTTTTTTATGTGTTTGATCTATAAGACGAATTTACCGTGAAGAAGATAGACTATTACAGTTAATGAATATGAACCAGTATTCAAAGCTTATTTGCATGTGGGAGTAAGATGACTTGTAATTTTGAAGTATAACAAACTAAGACCATTTTGAGAAGATTCAAAAGTAACATGTTTTAATCTCATTACACTATGGAAACTTTCAGTTGCTGGTTATTCTTTCTTTAAAACAATGGTCCATTAGCTAAGTGGAGAATGTTGGTTATTTTCTTGGGCTGCATAACTATTTGTTATCAATGGCTTTCATGCCAAGGTATCCATGATGTACTTTCTTTCCATACTGGCATCAAGTTGGAATCAGATCCAACCATTATTCTCCGTATGCAACCAAGGTTACCTTTTCTCTAGATTGATATTCTGTTGTTGCAGGTGATCTTCCTGTTGTAATATCATGTGCCAGTCTTGCTCTTGCTGATGCTGGAATTATGCTTTATGATCTTGTTGCCTCAGTTTCTGTGGTATGCATGTGCACATTCTCGACTGTCCTGTTTCTTCTATAACTAATTTTGTATTTCTAGCATTAAGCCTATCCTCAACATGCATTTGATTTTGCTAAGTTTATCATGCGTTCTCTTTCCATTCAACTAGCTTTTTGGTTACAAAGGGTTATGCAAGTATACAGTTATTCAGGTTGCTGATAATTGAATCCTAAAAGTAGGAGATTGTAGTTCTCTGGGTTCTGGCCTATTTTCTGCTCTCTGCAACTGAGGAAGATATTTTTCCGCACAAAATGACCTTTCGCATTGGCTGTCTTGATTGCAGAACTTCATTTTTTAAAAAAGAATTTTGGGTTCTGTTTCCAACATAAGGCACTGATGGATCTTTATTCTATTATGATTATGTAACTCTCGGTGTCTACCATACGAATTACCATTTTAACTTCTAATACATTACTCTCATATGTTAACTAGAGCTGCTTTGGCAAGAATCTTCTTATTGATACTGTTTTGGAAGAAGAAAACTACCAAGATGGAAGTCTTATGATAACTTGTATGCCATCTCGTTACGAAGTCACTCAGCTCACAATCACAGGTGAATGGACAACTTCTAAAATTAATGAGGTAAAGCATCAACTCTTAACTTCACATTCATTCTGAAGAAAGTTTTTAGTACTAAAACAGCATCTGATAATGGTTTTTCTTGTTTGTTTGTTTTTATTACCACAAAAGGGTATGCAACTTTGCCTTGATGCTTCATGCAAGCTTGTGGAGATCATGAGATCATGCTTGAAGGAATCTGCCGTCACCATTTCAGAGGAATAAGAAGAGTGATGTCTAATGTCTCTTTTTAGTTTTAGTAGGGAAATCTCAACACCCCTTCCCCTTCCATCCCCAATTTTGATGAGAAAGAAAAGTATGTAAAATCTTTGGAAAATGGTTGATTTGGATTTTGCATCAAAGTAAAAAGTAGCAGAGAAGTATTCATTGGTTGGTGGCTGACCACAGTAAAAAACAACTCCAATGGCTGAAGAAGCAAAGTTGACTTGAAACCTCTTTTTCCTTTTTTTTTTTTTTTCTCTTTTCCTTTTGGTTTTTTAGCGTTGGTAAGTCAAGTCAAAAGCCTTATCCTCCTACTTCTACGGTTCTACCACGCTCCATTTTGAAGTCTATTCTCTAGTCAAAGTCTATTTCATTCTTTGTATTTTTTTTTTCTTTTTGAAATGTTTAGTTATGATCCTTTTAACACACGGATTCCATAGAGGCAAACAAAGCCATTGACTATACTCTCGATTCTTGTTTTGCAAAATCCTAGTACAAGTTAACATGGGATTCCAAAGCTTATGTAAGCTTTGACTTATTCCTTGGAAGATTTCTCTCTGCCTTATCT ATGATGTACAGTGATATTGGCCGGCTCAATTGTAGTGTTAGTTATACAACATTTTCCACTCCAGTTCGTGGACAGGGATCGGAAAACAAGGACTTCTCCTCAATGTTACATAAATCTTTGGAAGGGGCAATAATATTGGAATCATTCCCCAAAACAACAGTGGACGTATTTGCCTTGGTGTTGGAATCTGGAGGCAGTGATCTTCCTGTTGTAATATCATGTGCCAGTCTTGCTCTTGCTGATGCTGGAATTATGCTTTATGATCTTGTTGCCTCAGTTTCTGTGAGCTGCTTTGGCAAGAATCTTCTTATTGATACTGTTTTGGAAGAAGAAAACTACCAAGATGGAAGTCTTATGATAACTTGTATGCCATCTCGTTACGAAGTCACTCAGCTCACAATCACAGGTGAATGGACAACTTCTAAAATTAATGAGGGTATGCAACTTTGCCTTGATGCTTCATGCAAGCTTGTGGAGATCATGAGATCATGCTTGAAGGAATCTGCCGTCACCATTTCAGAGGAATAA MMYSDIGRLNCSVSYTTFSTPVRGQGSENKDFSSMLHKSLEGAIILESFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVSCFGKNLLIDTVLEEENYQDGSLMITCMPSRYEVTQLTITGEWTTSKINEGMQLCLDASCKLVEIMRSCLKESAVTISEE Homology
BLAST of Cucsat.G17949.T12 vs. ExPASy Swiss-Prot
Match: A2RVK7 (Exosome complex component RRP41-like OS=Arabidopsis thaliana OX=3702 GN=RRP41L PE=2 SV=1) HSP 1 Score: 263.5 bits (672), Expect = 1.7e-69 Identity = 128/174 (73.56%), Postives = 152/174 (87.36%), Query Frame = 0
BLAST of Cucsat.G17949.T12 vs. ExPASy Swiss-Prot
Match: Q6P0I8 (Exosome complex component MTR3 OS=Danio rerio OX=7955 GN=exosc6 PE=2 SV=2) HSP 1 Score: 95.5 bits (236), Expect = 6.3e-19 Identity = 60/170 (35.29%), Postives = 90/170 (52.94%), Query Frame = 0
BLAST of Cucsat.G17949.T12 vs. ExPASy Swiss-Prot
Match: Q28F19 (Exosome complex component MTR3 OS=Xenopus tropicalis OX=8364 GN=exosc6 PE=2 SV=1) HSP 1 Score: 93.2 bits (230), Expect = 3.1e-18 Identity = 61/166 (36.75%), Postives = 90/166 (54.22%), Query Frame = 0
BLAST of Cucsat.G17949.T12 vs. ExPASy Swiss-Prot
Match: A3MUP1 (Exosome complex component Rrp41 OS=Pyrobaculum calidifontis (strain JCM 11548 / VA1) OX=410359 GN=rrp41 PE=3 SV=1) HSP 1 Score: 92.8 bits (229), Expect = 4.1e-18 Identity = 51/145 (35.17%), Postives = 84/145 (57.93%), Query Frame = 0
BLAST of Cucsat.G17949.T12 vs. ExPASy Swiss-Prot
Match: Q8ZVM9 (Exosome complex component Rrp41 OS=Pyrobaculum aerophilum (strain ATCC 51768 / IM2 / DSM 7523 / JCM 9630 / NBRC 100827) OX=178306 GN=rrp41 PE=3 SV=1) HSP 1 Score: 90.1 bits (222), Expect = 2.6e-17 Identity = 51/145 (35.17%), Postives = 83/145 (57.24%), Query Frame = 0
BLAST of Cucsat.G17949.T12 vs. NCBI nr
Match: XP_004145749.1 (exosome complex component RRP41-like [Cucumis sativus] >KGN46847.1 hypothetical protein Csa_020883 [Cucumis sativus]) HSP 1 Score: 339 bits (870), Expect = 4.35e-116 Identity = 175/175 (100.00%), Postives = 175/175 (100.00%), Query Frame = 0
BLAST of Cucsat.G17949.T12 vs. NCBI nr
Match: XP_008463959.1 (PREDICTED: exosome complex component RRP41-like [Cucumis melo]) HSP 1 Score: 332 bits (852), Expect = 2.48e-113 Identity = 170/175 (97.14%), Postives = 173/175 (98.86%), Query Frame = 0
BLAST of Cucsat.G17949.T12 vs. NCBI nr
Match: XP_038900611.1 (exosome complex component RRP41-like isoform X3 [Benincasa hispida]) HSP 1 Score: 326 bits (836), Expect = 1.53e-111 Identity = 166/175 (94.86%), Postives = 172/175 (98.29%), Query Frame = 0
BLAST of Cucsat.G17949.T12 vs. NCBI nr
Match: XP_038900610.1 (exosome complex component RRP41-like isoform X2 [Benincasa hispida]) HSP 1 Score: 326 bits (836), Expect = 4.48e-111 Identity = 166/175 (94.86%), Postives = 172/175 (98.29%), Query Frame = 0
BLAST of Cucsat.G17949.T12 vs. NCBI nr
Match: XP_038900607.1 (exosome complex component RRP41-like isoform X1 [Benincasa hispida] >XP_038900608.1 exosome complex component RRP41-like isoform X1 [Benincasa hispida] >XP_038900609.1 exosome complex component RRP41-like isoform X1 [Benincasa hispida]) HSP 1 Score: 326 bits (836), Expect = 6.55e-111 Identity = 166/175 (94.86%), Postives = 172/175 (98.29%), Query Frame = 0
BLAST of Cucsat.G17949.T12 vs. ExPASy TrEMBL
Match: A0A0A0KEK6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G146430 PE=4 SV=1) HSP 1 Score: 339 bits (870), Expect = 2.11e-116 Identity = 175/175 (100.00%), Postives = 175/175 (100.00%), Query Frame = 0
BLAST of Cucsat.G17949.T12 vs. ExPASy TrEMBL
Match: A0A1S3CKF3 (exosome complex component RRP41-like OS=Cucumis melo OX=3656 GN=LOC103501959 PE=4 SV=1) HSP 1 Score: 332 bits (852), Expect = 1.20e-113 Identity = 170/175 (97.14%), Postives = 173/175 (98.86%), Query Frame = 0
BLAST of Cucsat.G17949.T12 vs. ExPASy TrEMBL
Match: A0A6J1JDA9 (exosome complex component RRP41-like OS=Cucurbita maxima OX=3661 GN=LOC111483981 PE=4 SV=1) HSP 1 Score: 325 bits (832), Expect = 1.29e-110 Identity = 165/175 (94.29%), Postives = 171/175 (97.71%), Query Frame = 0
BLAST of Cucsat.G17949.T12 vs. ExPASy TrEMBL
Match: A0A6J1FYV1 (exosome complex component RRP41-like OS=Cucurbita moschata OX=3662 GN=LOC111449089 PE=4 SV=1) HSP 1 Score: 323 bits (828), Expect = 5.24e-110 Identity = 164/175 (93.71%), Postives = 170/175 (97.14%), Query Frame = 0
BLAST of Cucsat.G17949.T12 vs. ExPASy TrEMBL
Match: A0A6J1CHT0 (exosome complex component RRP41-like OS=Momordica charantia OX=3673 GN=LOC111011303 PE=4 SV=1) HSP 1 Score: 318 bits (814), Expect = 6.84e-108 Identity = 162/175 (92.57%), Postives = 173/175 (98.86%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucumber (B10) v3
Date Performed: 2021-10-25
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
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