Cucsat.G17949.T12 (mRNA) Cucumber (B10) v3

Overview


Name	Cucsat.G17949.T12
Type	mRNA
Organism	Cucumis sativus L. var. sativus cv B10 (Cucumber (B10) v3)
Description	exosome complex component RRP41-like
Location	ctg3345: 1774782 .. 1778497 (+)
RNA-Seq Expression	Cucsat.G17949.T12
Synteny	Cucsat.G17949.T12

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATCATTAGGGAATTAAGCCCTTGTCTGGCGCCCTCACCCGCTTCCAAGGTTCATCCCAATCGTTGGCTCCTCGGTCTCTACCATAACACACAACTCTTTTCGATCTCTTTCAACTCTTAATAGCCCATTCTCTAAACCGATCGATTCTGGGTTTTTGTGTTCATTGCCTTGACGGCCTCAGGTACCTTTTTTTTTTTGCATTAATTATAGGTTTTGAACCCTAAATTCTGGTTTTGTTTGCCAGTTTTCTTTTGCCGAAATGTAGTTTTTTCTTTTTTTTTGTGTGTATTTTTCCATGGAGATTAGCTACTGAGGCCCTTCCATTGTGTGCCAAACCTCAGGAAATTTGTGGCGGAGCCTTCTAACTTGTCAACGGAGTCATTCATTGGCGTTCTAAATGGCCAAAAAAGCGACACCAACTACCACAACGTATTCTCCGTCTCCTACTGTCCACAAAACCAGGCCATCCCTCTTCAGAACCGATGACGTCAACTGGGTTCGCCCCGATGGCCGTGGCTTCCATCAATGCCGCCCTGCTTGTATGTCTATCTTGCCCATTTCTGTTTTTCTCATTTGCTCTGTCTTGCTGCTTTTCACATTATATCGTTATGTTATTGTTTCATTTAATGTCTATTTGAGGTTATTGTTTCTAATTGCTGCTAGTTCGAGGTTATTGTTCTCGATCAGTTTATCATAAGTACTAAGCACCCTCGCATTATTTCTGCTGTCTCAATCTTGTGACCACGTTATCAAATTTGCTCTGTATTTGTATGCTTATGATGTCTTTTCCATGATGATGGTCCTGTTGAGGATCCCACGTGGAGATAGATGAGCTACTTCTCCCACTCCCAATTTATTTTGAGAGATGGAGCCACGTTATCTAATAGGCTTGAGAATCGTTGTTTATCTAATAGCCATGTTATCTTAGTTTATTGATGGAAAAATTGGTTGATGCCATGATCTTAATAAATAAGCGTTAACTGAGAAGTAGGAAATGACATGGTTAAGAATGTGTTATCTTGTCTTTCGACATTGAAGTCTAACTGGAAGATTCTCCCTTTGATTCGATTCAGTTAGTAGTTGATCATAGAGTCCTTGAGGATTTTGAACATATGTTGTTTTACTTGGTGGTTTTGACATTTCTGTTGTTAAGTCTTGGACAAATATCATCTGTTTAGAAACCAAACTTGTCATTCCTTTGCAGTTTTCAGGACTGGAGCTGTAAATGCTGCTTCAGGATCTGCTTATGCAGAATTCGGTAATACCAAGGTCATTGTTTCTGTGTAAGTTCTAGCTTACCTCCGACTCCAAGTATGTGCTCTTTGTGACTTCTAGGTTTCTCTTTGATGATGAGAGTTTGAGCACCAGTGCCTAATCCAATTGGTTGCCCATTTGATGAACTTGCTATTCCTTTCCTTTAATCATTTAAATCATTTGCTACTTTTTTGCAGTATTTTGTGTCCAGTTTCCTTTCTTTATTCAAATGCTGTATTCTTTGCATCAGATTTGGCCCCCGAGAAAGTAAGAAAGCAATGATGTACAGTGATATTGGCCGGCTCAATTGTAGTGTTAGTTATACAACATTTTCCACTCCAGTTCGTGGACAGGTGTGAAGATACTCCTCTTCTTCTATTTAGTTTATATCTTTTTACTGTTGTCATTTGACTATCTCATTTTGTCTTGACTTCATTTGTTAGGGATCGGAAAACAAGGACTTCTCCTCAATGTTACATAAATCTTTGGAAGGGGCAATAATATTGGAATCATTCCCCAAAACAACAGTGGACGTATTTGCCTTGGTGTTGGAATCTGGAGGCAGTAAGTATAGGATTTTTTTTTATGTGTTTGATCTATAAGACGAATTTACCGTGAAGAAGATAGACTATTACAGTTAATGAATATGAACCAGTATTCAAAGCTTATTTGCATGTGGGAGTAAGATGACTTGTAATTTTGAAGTATAACAAACTAAGACCATTTTGAGAAGATTCAAAAGTAACATGTTTTAATCTCATTACACTATGGAAACTTTCAGTTGCTGGTTATTCTTTCTTTAAAACAATGGTCCATTAGCTAAGTGGAGAATGTTGGTTATTTTCTTGGGCTGCATAACTATTTGTTATCAATGGCTTTCATGCCAAGGTATCCATGATGTACTTTCTTTCCATACTGGCATCAAGTTGGAATCAGATCCAACCATTATTCTCCGTATGCAACCAAGGTTACCTTTTCTCTAGATTGATATTCTGTTGTTGCAGGTGATCTTCCTGTTGTAATATCATGTGCCAGTCTTGCTCTTGCTGATGCTGGAATTATGCTTTATGATCTTGTTGCCTCAGTTTCTGTGGTATGCATGTGCACATTCTCGACTGTCCTGTTTCTTCTATAACTAATTTTGTATTTCTAGCATTAAGCCTATCCTCAACATGCATTTGATTTTGCTAAGTTTATCATGCGTTCTCTTTCCATTCAACTAGCTTTTTGGTTACAAAGGGTTATGCAAGTATACAGTTATTCAGGTTGCTGATAATTGAATCCTAAAAGTAGGAGATTGTAGTTCTCTGGGTTCTGGCCTATTTTCTGCTCTCTGCAACTGAGGAAGATATTTTTCCGCACAAAATGACCTTTCGCATTGGCTGTCTTGATTGCAGAACTTCATTTTTTAAAAAAGAATTTTGGGTTCTGTTTCCAACATAAGGCACTGATGGATCTTTATTCTATTATGATTATGTAACTCTCGGTGTCTACCATACGAATTACCATTTTAACTTCTAATACATTACTCTCATATGTTAACTAGAGCTGCTTTGGCAAGAATCTTCTTATTGATACTGTTTTGGAAGAAGAAAACTACCAAGATGGAAGTCTTATGATAACTTGTATGCCATCTCGTTACGAAGTCACTCAGCTCACAATCACAGGTGAATGGACAACTTCTAAAATTAATGAGGTAAAGCATCAACTCTTAACTTCACATTCATTCTGAAGAAAGTTTTTAGTACTAAAACAGCATCTGATAATGGTTTTTCTTGTTTGTTTGTTTTTATTACCACAAAAGGGTATGCAACTTTGCCTTGATGCTTCATGCAAGCTTGTGGAGATCATGAGATCATGCTTGAAGGAATCTGCCGTCACCATTTCAGAGGAATAAGAAGAGTGATGTCTAATGTCTCTTTTTAGTTTTAGTAGGGAAATCTCAACACCCCTTCCCCTTCCATCCCCAATTTTGATGAGAAAGAAAAGTATGTAAAATCTTTGGAAAATGGTTGATTTGGATTTTGCATCAAAGTAAAAAGTAGCAGAGAAGTATTCATTGGTTGGTGGCTGACCACAGTAAAAAACAACTCCAATGGCTGAAGAAGCAAAGTTGACTTGAAACCTCTTTTTCCTTTTTTTTTTTTTTTCTCTTTTCCTTTTGGTTTTTTAGCGTTGGTAAGTCAAGTCAAAAGCCTTATCCTCCTACTTCTACGGTTCTACCACGCTCCATTTTGAAGTCTATTCTCTAGTCAAAGTCTATTTCATTCTTTGTATTTTTTTTTTCTTTTTGAAATGTTTAGTTATGATCCTTTTAACACACGGATTCCATAGAGGCAAACAAAGCCATTGACTATACTCTCGATTCTTGTTTTGCAAAATCCTAGTACAAGTTAACATGGGATTCCAAAGCTTATGTAAGCTTTGACTTATTCCTTGGAAGATTTCTCTCTGCCTTATCT

Coding sequence (CDS)

ATGATGTACAGTGATATTGGCCGGCTCAATTGTAGTGTTAGTTATACAACATTTTCCACTCCAGTTCGTGGACAGGGATCGGAAAACAAGGACTTCTCCTCAATGTTACATAAATCTTTGGAAGGGGCAATAATATTGGAATCATTCCCCAAAACAACAGTGGACGTATTTGCCTTGGTGTTGGAATCTGGAGGCAGTGATCTTCCTGTTGTAATATCATGTGCCAGTCTTGCTCTTGCTGATGCTGGAATTATGCTTTATGATCTTGTTGCCTCAGTTTCTGTGAGCTGCTTTGGCAAGAATCTTCTTATTGATACTGTTTTGGAAGAAGAAAACTACCAAGATGGAAGTCTTATGATAACTTGTATGCCATCTCGTTACGAAGTCACTCAGCTCACAATCACAGGTGAATGGACAACTTCTAAAATTAATGAGGGTATGCAACTTTGCCTTGATGCTTCATGCAAGCTTGTGGAGATCATGAGATCATGCTTGAAGGAATCTGCCGTCACCATTTCAGAGGAATAA

Protein sequence

MMYSDIGRLNCSVSYTTFSTPVRGQGSENKDFSSMLHKSLEGAIILESFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVSCFGKNLLIDTVLEEENYQDGSLMITCMPSRYEVTQLTITGEWTTSKINEGMQLCLDASCKLVEIMRSCLKESAVTISEE

Homology

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BLAST of Cucsat.G17949.T12 vs. ExPASy Swiss-Prot
Match: A2RVK7 (Exosome complex component RRP41-like OS=Arabidopsis thaliana OX=3702 GN=RRP41L PE=2 SV=1)

HSP 1 Score: 263.5 bits (672), Expect = 1.7e-69
Identity = 128/174 (73.56%), Postives = 152/174 (87.36%), Query Frame = 0


Query: 1   MMYSDIGRLNCSVSYTTFSTPVRGQGSENKDFSSMLHKSLEGAIILESFPKTTVDVFALV 60
           M+YSD+GRLNC+VSYT F++P  GQG+++K++SSMLHK+LEG I++E+FPKTTVDVFALV
Sbjct: 83  MVYSDVGRLNCNVSYTNFASPTLGQGTDHKEYSSMLHKALEGVIMMETFPKTTVDVFALV 142

Query: 61  LESGGSDLPVVISCASLALADAGIMLYDLVASVSVSCFGKNLLIDTVLEEENYQDGSLMI 120
           LESGGSDL V+ISCASLALADAGIM+YDL+ +VSVSC GK+L+ID V EEE  +DGS M+
Sbjct: 143 LESGGSDLSVLISCASLALADAGIMMYDLITAVSVSCIGKSLMIDPVTEEEGCEDGSFMM 202

Query: 121 TCMPSRYEVTQLTITGEWTTSKINEGMQLCLDASCKLVEIMRSCLKESAVTISE 175
           TCMPSRYE+TQLTITGEWTT  INE MQLCLDAS KL EIMR CLK+SA    E
Sbjct: 203 TCMPSRYEITQLTITGEWTTPNINEAMQLCLDASSKLGEIMRDCLKQSASASDE 256

[Close]

BLAST of Cucsat.G17949.T12 vs. ExPASy Swiss-Prot
Match: Q6P0I8 (Exosome complex component MTR3 OS=Danio rerio OX=7955 GN=exosc6 PE=2 SV=2)

HSP 1 Score: 95.5 bits (236), Expect = 6.3e-19
Identity = 60/170 (35.29%), Postives = 90/170 (52.94%), Query Frame = 0


Query: 7   GRLNCSVSYTTFSTPVRG---QGSENKDFSSMLHKSLEGAIILESFPKTTVDVFALVLES 66
           GRL C      FS   RG   QGSE +D S+ L +SL   + L  +P++ +DV  +VLE+
Sbjct: 89  GRLVCDFRLAPFSCVKRGAWIQGSEERDLSATLMESLRPGVCLHRYPRSQIDVNVMVLEN 148

Query: 67  GGSDLPVVISCASLALADAGIMLYDLVASVSVSCFGKNLLIDTVLEE------ENYQD-- 126
            GS L   ++CAS+ALADAGI +YD+V   ++   G   L+D    E      E Y D  
Sbjct: 149 DGSVLAHAVTCASMALADAGIEMYDIVLGCTLRQSGNACLVDPSYAEECGSWQEGYGDNQ 208

Query: 127 GSLMITCMPSRYEVTQLTITGEWTTSKINEGMQLCLDASCKLVEIMRSCL 166
           G + +  +P+  +V+ L   GE     + E M+ C+D   KL  +++  L
Sbjct: 209 GCVTLALLPNLNQVSGLNADGEMREDTLTEAMRTCMDGCHKLYPVVQQAL 258

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BLAST of Cucsat.G17949.T12 vs. ExPASy Swiss-Prot
Match: Q28F19 (Exosome complex component MTR3 OS=Xenopus tropicalis OX=8364 GN=exosc6 PE=2 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 3.1e-18
Identity = 61/166 (36.75%), Postives = 90/166 (54.22%), Query Frame = 0


Query: 7   GRLNCSVSYTTFST--PVRGQ---GSENKDFSSMLHKSLEGAIILESFPKTTVDVFALVL 66
           GRL C + +  FS   P  G    G   +     L +SLE A+ L+ +P+  V V+ LVL
Sbjct: 89  GRLLCDLRWAPFSRRGPWSGSCPAGPSPRQAGLQLQESLEPAVRLDRYPRAEVIVWVLVL 148

Query: 67  ESGGSDLPVVISCASLALADAGIMLYDLVASVSVSCF-GKNLLIDTVLEEENYQDGSLM- 126
           E  GS LP  +SCASLALADAGI ++DL     +S   G  LL+D   +EE    G  M 
Sbjct: 149 EDRGSALPAAVSCASLALADAGIEMFDLALGCGLSRGPGGELLLDPDDDEEEAGSGGTMS 208

Query: 127 ITCMPSRYEVTQLTITGEWTTSKINEGMQLCLDASCKLVEIMRSCL 166
           ++ +P+  +V+ L  +GEW      E ++LC++   +L  ++  CL
Sbjct: 209 LSLLPTLNQVSGLISSGEWEGESSEEAVRLCMEGCQRLYPVLHQCL 254

[Close]

BLAST of Cucsat.G17949.T12 vs. ExPASy Swiss-Prot
Match: A3MUP1 (Exosome complex component Rrp41 OS=Pyrobaculum calidifontis (strain JCM 11548 / VA1) OX=410359 GN=rrp41 PE=3 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 4.1e-18
Identity = 51/145 (35.17%), Postives = 84/145 (57.93%), Query Frame = 0


Query: 31  DFSSMLHKSLEGAIILESFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLV 90
           + S +L ++LE A++LE +P++ +DVF  +L++ GS     ++ ASLALADAGI + DLV
Sbjct: 98  EISKVLREALEPAVMLEQYPRSRIDVFIEILQADGSTRVASLTAASLALADAGIYMRDLV 157

Query: 91  ASVSVSCFGKNLLIDTVLEEENYQDGSLMITCMPSRYEVTQLTITGEWTTSKINEGMQLC 150
             VSV      +++D    E+NY +G + +  MP+    T L + G WT  K  E + L 
Sbjct: 158 VGVSVGLVDGTVVLDLNGLEDNYGEGDMPVGYMPNLRRFTLLQLDGAWTREKFLEALGLA 217

Query: 151 LDASCKLVEIMRSCLKESAVTISEE 176
           +  +  + ++ R  LK   + I+EE
Sbjct: 218 VKGAEYVYQVAREALKNKYMAIAEE 242

[Close]

BLAST of Cucsat.G17949.T12 vs. ExPASy Swiss-Prot
Match: Q8ZVM9 (Exosome complex component Rrp41 OS=Pyrobaculum aerophilum (strain ATCC 51768 / IM2 / DSM 7523 / JCM 9630 / NBRC 100827) OX=178306 GN=rrp41 PE=3 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 2.6e-17
Identity = 51/145 (35.17%), Postives = 83/145 (57.24%), Query Frame = 0


Query: 31  DFSSMLHKSLEGAIILESFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLV 90
           + S +L ++LE AI+LE +P++ +DVF  +L++ GS     ++ ASLALADAGI + DLV
Sbjct: 98  EISKILREALEPAIVLEQYPRSRIDVFVEILQADGSTRVASLTAASLALADAGIYMRDLV 157

Query: 91  ASVSVSCFGKNLLIDTVLEEENYQDGSLMITCMPSRYEVTQLTITGEWTTSKINEGMQLC 150
             VSV      +++D    E+ Y +G L +  MP+    T L + G WT     + + L 
Sbjct: 158 VGVSVGLVDGTVVLDLNGLEDQYGEGDLPLGYMPNLKRFTLLQLDGAWTRDMFLQALNLA 217

Query: 151 LDASCKLVEIMRSCLKESAVTISEE 176
           +  +  + +I R  LK   ++I+EE
Sbjct: 218 VRGAEYVYQIARDALKNKYMSIAEE 242

[Close]

BLAST of Cucsat.G17949.T12 vs. NCBI nr
Match: XP_004145749.1 (exosome complex component RRP41-like [Cucumis sativus] >KGN46847.1 hypothetical protein Csa_020883 [Cucumis sativus])

HSP 1 Score: 339 bits (870), Expect = 4.35e-116
Identity = 175/175 (100.00%), Postives = 175/175 (100.00%), Query Frame = 0


Query: 1   MMYSDIGRLNCSVSYTTFSTPVRGQGSENKDFSSMLHKSLEGAIILESFPKTTVDVFALV 60
           MMYSDIGRLNCSVSYTTFSTPVRGQGSENKDFSSMLHKSLEGAIILESFPKTTVDVFALV
Sbjct: 84  MMYSDIGRLNCSVSYTTFSTPVRGQGSENKDFSSMLHKSLEGAIILESFPKTTVDVFALV 143

Query: 61  LESGGSDLPVVISCASLALADAGIMLYDLVASVSVSCFGKNLLIDTVLEEENYQDGSLMI 120
           LESGGSDLPVVISCASLALADAGIMLYDLVASVSVSCFGKNLLIDTVLEEENYQDGSLMI
Sbjct: 144 LESGGSDLPVVISCASLALADAGIMLYDLVASVSVSCFGKNLLIDTVLEEENYQDGSLMI 203

Query: 121 TCMPSRYEVTQLTITGEWTTSKINEGMQLCLDASCKLVEIMRSCLKESAVTISEE 175
           TCMPSRYEVTQLTITGEWTTSKINEGMQLCLDASCKLVEIMRSCLKESAVTISEE
Sbjct: 204 TCMPSRYEVTQLTITGEWTTSKINEGMQLCLDASCKLVEIMRSCLKESAVTISEE 258

[Close]

BLAST of Cucsat.G17949.T12 vs. NCBI nr
Match: XP_008463959.1 (PREDICTED: exosome complex component RRP41-like [Cucumis melo])

HSP 1 Score: 332 bits (852), Expect = 2.48e-113
Identity = 170/175 (97.14%), Postives = 173/175 (98.86%), Query Frame = 0


Query: 1   MMYSDIGRLNCSVSYTTFSTPVRGQGSENKDFSSMLHKSLEGAIILESFPKTTVDVFALV 60
           MMYSDIGRLNCSVSYTTFSTPVRGQGSENK+FSSMLHKSLEGAIILE+FPKTTVDVFALV
Sbjct: 85  MMYSDIGRLNCSVSYTTFSTPVRGQGSENKEFSSMLHKSLEGAIILETFPKTTVDVFALV 144

Query: 61  LESGGSDLPVVISCASLALADAGIMLYDLVASVSVSCFGKNLLIDTVLEEENYQDGSLMI 120
           LESGGSDLPVVISCASLALADAGIMLYDLVASVSVSCFGKNLLID +LEEENYQDGSLMI
Sbjct: 145 LESGGSDLPVVISCASLALADAGIMLYDLVASVSVSCFGKNLLIDPILEEENYQDGSLMI 204

Query: 121 TCMPSRYEVTQLTITGEWTTSKINEGMQLCLDASCKLVEIMRSCLKESAVTISEE 175
           TCMPSRYEVTQLTITGEWTTSKINEGMQLCLDASCKLVEIMRSCLKESA TISEE
Sbjct: 205 TCMPSRYEVTQLTITGEWTTSKINEGMQLCLDASCKLVEIMRSCLKESAATISEE 259

[Close]

BLAST of Cucsat.G17949.T12 vs. NCBI nr
Match: XP_038900611.1 (exosome complex component RRP41-like isoform X3 [Benincasa hispida])

HSP 1 Score: 326 bits (836), Expect = 1.53e-111
Identity = 166/175 (94.86%), Postives = 172/175 (98.29%), Query Frame = 0


Query: 1   MMYSDIGRLNCSVSYTTFSTPVRGQGSENKDFSSMLHKSLEGAIILESFPKTTVDVFALV 60
           MMYSDIGRLNCSVSYTTFSTPVRGQGSENK+FSSMLHK+LEGAI+LE+FPKTTVDVFALV
Sbjct: 42  MMYSDIGRLNCSVSYTTFSTPVRGQGSENKEFSSMLHKALEGAIMLETFPKTTVDVFALV 101

Query: 61  LESGGSDLPVVISCASLALADAGIMLYDLVASVSVSCFGKNLLIDTVLEEENYQDGSLMI 120
           LESGGSDLPVVISCASLALADAGIMLYDLVASVSVSCFGKNLLID  LEEENYQDGSLMI
Sbjct: 102 LESGGSDLPVVISCASLALADAGIMLYDLVASVSVSCFGKNLLIDPTLEEENYQDGSLMI 161

Query: 121 TCMPSRYEVTQLTITGEWTTSKINEGMQLCLDASCKLVEIMRSCLKESAVTISEE 175
           TCMPSRYEVTQLTITGEW+T+KINEGMQLCLDASCKLVEIMRSCLKESA TISEE
Sbjct: 162 TCMPSRYEVTQLTITGEWSTAKINEGMQLCLDASCKLVEIMRSCLKESAATISEE 216

[Close]

BLAST of Cucsat.G17949.T12 vs. NCBI nr
Match: XP_038900610.1 (exosome complex component RRP41-like isoform X2 [Benincasa hispida])

HSP 1 Score: 326 bits (836), Expect = 4.48e-111
Identity = 166/175 (94.86%), Postives = 172/175 (98.29%), Query Frame = 0


Query: 1   MMYSDIGRLNCSVSYTTFSTPVRGQGSENKDFSSMLHKSLEGAIILESFPKTTVDVFALV 60
           MMYSDIGRLNCSVSYTTFSTPVRGQGSENK+FSSMLHK+LEGAI+LE+FPKTTVDVFALV
Sbjct: 73  MMYSDIGRLNCSVSYTTFSTPVRGQGSENKEFSSMLHKALEGAIMLETFPKTTVDVFALV 132

Query: 61  LESGGSDLPVVISCASLALADAGIMLYDLVASVSVSCFGKNLLIDTVLEEENYQDGSLMI 120
           LESGGSDLPVVISCASLALADAGIMLYDLVASVSVSCFGKNLLID  LEEENYQDGSLMI
Sbjct: 133 LESGGSDLPVVISCASLALADAGIMLYDLVASVSVSCFGKNLLIDPTLEEENYQDGSLMI 192

Query: 121 TCMPSRYEVTQLTITGEWTTSKINEGMQLCLDASCKLVEIMRSCLKESAVTISEE 175
           TCMPSRYEVTQLTITGEW+T+KINEGMQLCLDASCKLVEIMRSCLKESA TISEE
Sbjct: 193 TCMPSRYEVTQLTITGEWSTAKINEGMQLCLDASCKLVEIMRSCLKESAATISEE 247

[Close]

BLAST of Cucsat.G17949.T12 vs. NCBI nr
Match: XP_038900607.1 (exosome complex component RRP41-like isoform X1 [Benincasa hispida] >XP_038900608.1 exosome complex component RRP41-like isoform X1 [Benincasa hispida] >XP_038900609.1 exosome complex component RRP41-like isoform X1 [Benincasa hispida])

HSP 1 Score: 326 bits (836), Expect = 6.55e-111
Identity = 166/175 (94.86%), Postives = 172/175 (98.29%), Query Frame = 0


Query: 1   MMYSDIGRLNCSVSYTTFSTPVRGQGSENKDFSSMLHKSLEGAIILESFPKTTVDVFALV 60
           MMYSDIGRLNCSVSYTTFSTPVRGQGSENK+FSSMLHK+LEGAI+LE+FPKTTVDVFALV
Sbjct: 84  MMYSDIGRLNCSVSYTTFSTPVRGQGSENKEFSSMLHKALEGAIMLETFPKTTVDVFALV 143

Query: 61  LESGGSDLPVVISCASLALADAGIMLYDLVASVSVSCFGKNLLIDTVLEEENYQDGSLMI 120
           LESGGSDLPVVISCASLALADAGIMLYDLVASVSVSCFGKNLLID  LEEENYQDGSLMI
Sbjct: 144 LESGGSDLPVVISCASLALADAGIMLYDLVASVSVSCFGKNLLIDPTLEEENYQDGSLMI 203

Query: 121 TCMPSRYEVTQLTITGEWTTSKINEGMQLCLDASCKLVEIMRSCLKESAVTISEE 175
           TCMPSRYEVTQLTITGEW+T+KINEGMQLCLDASCKLVEIMRSCLKESA TISEE
Sbjct: 204 TCMPSRYEVTQLTITGEWSTAKINEGMQLCLDASCKLVEIMRSCLKESAATISEE 258

[Close]

BLAST of Cucsat.G17949.T12 vs. ExPASy TrEMBL
Match: A0A0A0KEK6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G146430 PE=4 SV=1)

HSP 1 Score: 339 bits (870), Expect = 2.11e-116
Identity = 175/175 (100.00%), Postives = 175/175 (100.00%), Query Frame = 0


Query: 1   MMYSDIGRLNCSVSYTTFSTPVRGQGSENKDFSSMLHKSLEGAIILESFPKTTVDVFALV 60
           MMYSDIGRLNCSVSYTTFSTPVRGQGSENKDFSSMLHKSLEGAIILESFPKTTVDVFALV
Sbjct: 84  MMYSDIGRLNCSVSYTTFSTPVRGQGSENKDFSSMLHKSLEGAIILESFPKTTVDVFALV 143

Query: 61  LESGGSDLPVVISCASLALADAGIMLYDLVASVSVSCFGKNLLIDTVLEEENYQDGSLMI 120
           LESGGSDLPVVISCASLALADAGIMLYDLVASVSVSCFGKNLLIDTVLEEENYQDGSLMI
Sbjct: 144 LESGGSDLPVVISCASLALADAGIMLYDLVASVSVSCFGKNLLIDTVLEEENYQDGSLMI 203

Query: 121 TCMPSRYEVTQLTITGEWTTSKINEGMQLCLDASCKLVEIMRSCLKESAVTISEE 175
           TCMPSRYEVTQLTITGEWTTSKINEGMQLCLDASCKLVEIMRSCLKESAVTISEE
Sbjct: 204 TCMPSRYEVTQLTITGEWTTSKINEGMQLCLDASCKLVEIMRSCLKESAVTISEE 258

[Close]

BLAST of Cucsat.G17949.T12 vs. ExPASy TrEMBL
Match: A0A1S3CKF3 (exosome complex component RRP41-like OS=Cucumis melo OX=3656 GN=LOC103501959 PE=4 SV=1)

HSP 1 Score: 332 bits (852), Expect = 1.20e-113
Identity = 170/175 (97.14%), Postives = 173/175 (98.86%), Query Frame = 0


Query: 1   MMYSDIGRLNCSVSYTTFSTPVRGQGSENKDFSSMLHKSLEGAIILESFPKTTVDVFALV 60
           MMYSDIGRLNCSVSYTTFSTPVRGQGSENK+FSSMLHKSLEGAIILE+FPKTTVDVFALV
Sbjct: 85  MMYSDIGRLNCSVSYTTFSTPVRGQGSENKEFSSMLHKSLEGAIILETFPKTTVDVFALV 144

Query: 61  LESGGSDLPVVISCASLALADAGIMLYDLVASVSVSCFGKNLLIDTVLEEENYQDGSLMI 120
           LESGGSDLPVVISCASLALADAGIMLYDLVASVSVSCFGKNLLID +LEEENYQDGSLMI
Sbjct: 145 LESGGSDLPVVISCASLALADAGIMLYDLVASVSVSCFGKNLLIDPILEEENYQDGSLMI 204

Query: 121 TCMPSRYEVTQLTITGEWTTSKINEGMQLCLDASCKLVEIMRSCLKESAVTISEE 175
           TCMPSRYEVTQLTITGEWTTSKINEGMQLCLDASCKLVEIMRSCLKESA TISEE
Sbjct: 205 TCMPSRYEVTQLTITGEWTTSKINEGMQLCLDASCKLVEIMRSCLKESAATISEE 259

[Close]

BLAST of Cucsat.G17949.T12 vs. ExPASy TrEMBL
Match: A0A6J1JDA9 (exosome complex component RRP41-like OS=Cucurbita maxima OX=3661 GN=LOC111483981 PE=4 SV=1)

HSP 1 Score: 325 bits (832), Expect = 1.29e-110
Identity = 165/175 (94.29%), Postives = 171/175 (97.71%), Query Frame = 0


Query: 1   MMYSDIGRLNCSVSYTTFSTPVRGQGSENKDFSSMLHKSLEGAIILESFPKTTVDVFALV 60
           MMYSDIGRLNCSVSYTTFSTPVRGQGSENK+FSSMLHK+LEGAIILE+FPKTTVDVFALV
Sbjct: 84  MMYSDIGRLNCSVSYTTFSTPVRGQGSENKEFSSMLHKALEGAIILETFPKTTVDVFALV 143

Query: 61  LESGGSDLPVVISCASLALADAGIMLYDLVASVSVSCFGKNLLIDTVLEEENYQDGSLMI 120
           LESGGSDLPVVISCASLALADAGIMLYDLVASVSVSCFGKNLLID  LEEENYQDGSLMI
Sbjct: 144 LESGGSDLPVVISCASLALADAGIMLYDLVASVSVSCFGKNLLIDPALEEENYQDGSLMI 203

Query: 121 TCMPSRYEVTQLTITGEWTTSKINEGMQLCLDASCKLVEIMRSCLKESAVTISEE 175
           TCMPSRYEVTQLTITGEW+T+KINEGMQLCLDASCKLV IMRSCLKESA T+SEE
Sbjct: 204 TCMPSRYEVTQLTITGEWSTAKINEGMQLCLDASCKLVTIMRSCLKESAATVSEE 258

[Close]

BLAST of Cucsat.G17949.T12 vs. ExPASy TrEMBL
Match: A0A6J1FYV1 (exosome complex component RRP41-like OS=Cucurbita moschata OX=3662 GN=LOC111449089 PE=4 SV=1)

HSP 1 Score: 323 bits (828), Expect = 5.24e-110
Identity = 164/175 (93.71%), Postives = 170/175 (97.14%), Query Frame = 0


Query: 1   MMYSDIGRLNCSVSYTTFSTPVRGQGSENKDFSSMLHKSLEGAIILESFPKTTVDVFALV 60
           MMYSDIGRLNCSVSYTTFSTPVRGQGSENK+FSSMLHK+LEGAII E+FPKTTVDVFALV
Sbjct: 84  MMYSDIGRLNCSVSYTTFSTPVRGQGSENKEFSSMLHKALEGAIIFETFPKTTVDVFALV 143

Query: 61  LESGGSDLPVVISCASLALADAGIMLYDLVASVSVSCFGKNLLIDTVLEEENYQDGSLMI 120
           LESGGSDLPVVISCASLALADAGIMLYDLVASVSVSCFGKNLLID  LEEENYQDGSLMI
Sbjct: 144 LESGGSDLPVVISCASLALADAGIMLYDLVASVSVSCFGKNLLIDPALEEENYQDGSLMI 203

Query: 121 TCMPSRYEVTQLTITGEWTTSKINEGMQLCLDASCKLVEIMRSCLKESAVTISEE 175
           TCMPSRYEVTQLTITGEW+T+KINEGMQLCLDASCKLV IMRSCLKESA T+SEE
Sbjct: 204 TCMPSRYEVTQLTITGEWSTAKINEGMQLCLDASCKLVTIMRSCLKESAATVSEE 258

[Close]

BLAST of Cucsat.G17949.T12 vs. ExPASy TrEMBL
Match: A0A6J1CHT0 (exosome complex component RRP41-like OS=Momordica charantia OX=3673 GN=LOC111011303 PE=4 SV=1)

HSP 1 Score: 318 bits (814), Expect = 6.84e-108
Identity = 162/175 (92.57%), Postives = 173/175 (98.86%), Query Frame = 0


Query: 1   MMYSDIGRLNCSVSYTTFSTPVRGQGSENKDFSSMLHKSLEGAIILESFPKTTVDVFALV 60
           MMYSDIGRLNCSVSYTTF+TPVRGQGSENK+FSSMLHK+LEGAIILE+FPKTTVD+FALV
Sbjct: 84  MMYSDIGRLNCSVSYTTFATPVRGQGSENKEFSSMLHKALEGAIILETFPKTTVDIFALV 143

Query: 61  LESGGSDLPVVISCASLALADAGIMLYDLVASVSVSCFGKNLLIDTVLEEENYQDGSLMI 120
           LESGGSDLPVVISCASLALADAGIMLYDLVASVSVSCFGKNLLID +LEEENYQDGSLMI
Sbjct: 144 LESGGSDLPVVISCASLALADAGIMLYDLVASVSVSCFGKNLLIDPMLEEENYQDGSLMI 203

Query: 121 TCMPSRYEVTQLTITGEWTTSKINEGMQLCLDASCKLVEIMRSCLKESAVTISEE 175
           TCMPSRYEVTQLTITGEW+T+KINEGMQLCLDASCKLV+IMRSCLKESA TIS++
Sbjct: 204 TCMPSRYEVTQLTITGEWSTAKINEGMQLCLDASCKLVKIMRSCLKESA-TISQD 257

The following BLAST results are available for this feature:

BLAST of Cucsat.G17949.T12 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
A2RVK7	1.7e-69	73.56	Exosome complex component RRP41-like OS=Arabidopsis thaliana OX=3702 GN=RRP41L P...	[more]
Q6P0I8	6.3e-19	35.29	Exosome complex component MTR3 OS=Danio rerio OX=7955 GN=exosc6 PE=2 SV=2	[more]
Q28F19	3.1e-18	36.75	Exosome complex component MTR3 OS=Xenopus tropicalis OX=8364 GN=exosc6 PE=2 SV=1	[more]
A3MUP1	4.1e-18	35.17	Exosome complex component Rrp41 OS=Pyrobaculum calidifontis (strain JCM 11548 / ...	[more]
Q8ZVM9	2.6e-17	35.17	Exosome complex component Rrp41 OS=Pyrobaculum aerophilum (strain ATCC 51768 / I...	[more]

BLAST of Cucsat.G17949.T12 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004145749.1	4.35e-116	100.00	exosome complex component RRP41-like [Cucumis sativus] >KGN46847.1 hypothetical ...	[more]
XP_008463959.1	2.48e-113	97.14	PREDICTED: exosome complex component RRP41-like [Cucumis melo]	[more]
XP_038900611.1	1.53e-111	94.86	exosome complex component RRP41-like isoform X3 [Benincasa hispida]	[more]
XP_038900610.1	4.48e-111	94.86	exosome complex component RRP41-like isoform X2 [Benincasa hispida]	[more]
XP_038900607.1	6.55e-111	94.86	exosome complex component RRP41-like isoform X1 [Benincasa hispida] >XP_03890060...	[more]

BLAST of Cucsat.G17949.T12 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KEK6	2.11e-116	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G146430 PE=4 SV=1	[more]
A0A1S3CKF3	1.20e-113	97.14	exosome complex component RRP41-like OS=Cucumis melo OX=3656 GN=LOC103501959 PE=...	[more]
A0A6J1JDA9	1.29e-110	94.29	exosome complex component RRP41-like OS=Cucurbita maxima OX=3661 GN=LOC111483981...	[more]
A0A6J1FYV1	5.24e-110	93.71	exosome complex component RRP41-like OS=Cucurbita moschata OX=3662 GN=LOC1114490...	[more]
A0A6J1CHT0	6.84e-108	92.57	exosome complex component RRP41-like OS=Momordica charantia OX=3673 GN=LOC111011...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (B10) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR027408	PNPase/RNase PH domain superfamily	GENE3D	3.30.230.70		coord: 1..172 e-value: 1.0E-40 score: 141.6
IPR015847	Exoribonuclease, phosphorolytic domain 2	PFAM	PF03725	RNase_PH_C	coord: 88..149 e-value: 4.5E-6 score: 26.6
IPR001247	Exoribonuclease, phosphorolytic domain 1	PFAM	PF01138	RNase_PH	coord: 7..84 e-value: 2.9E-14 score: 53.7
None	No IPR available	PANTHER	PTHR11953	EXOSOME COMPLEX COMPONENT	coord: 3..169
None	No IPR available	PANTHER	PTHR11953:SF2	EXOSOME COMPLEX COMPONENT MTR3	coord: 3..169
None	No IPR available	CDD	cd11371	RNase_PH_MTR3	coord: 3..167 e-value: 6.30142E-73 score: 216.663
IPR020568	Ribosomal protein S5 domain 2-type fold	SUPERFAMILY	54211	Ribosomal protein S5 domain 2-like	coord: 3..115
IPR036345	Exoribonuclease, PH domain 2 superfamily	SUPERFAMILY	55666	Ribonuclease PH domain 2-like	coord: 86..173

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cucsat.G17949	Cucsat.G17949	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cucsat.G17949.T12.E1	Cucsat.G17949.T12.E1	exon
Cucsat.G17949.T12.E2	Cucsat.G17949.T12.E2	exon
Cucsat.G17949.T12.E3	Cucsat.G17949.T12.E3	exon
Cucsat.G17949.T12.E4	Cucsat.G17949.T12.E4	exon
Cucsat.G17949.T12.E5	Cucsat.G17949.T12.E5	exon
Cucsat.G17949.T12.E6	Cucsat.G17949.T12.E6	exon
Cucsat.G17949.T12.E7	Cucsat.G17949.T12.E7	exon
Cucsat.G17949.T12.E8	Cucsat.G17949.T12.E8	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cucsat.G17949.T12.C1	Cucsat.G17949.T12.C1	CDS
Cucsat.G17949.T12.C2	Cucsat.G17949.T12.C2	CDS
Cucsat.G17949.T12.C3	Cucsat.G17949.T12.C3	CDS
Cucsat.G17949.T12.C4	Cucsat.G17949.T12.C4	CDS
Cucsat.G17949.T12.C5	Cucsat.G17949.T12.C5	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cucsat.G17949.T12	Cucsat.G17949.T12-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0071028	nuclear mRNA surveillance
biological_process	GO:0034427	nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5'
biological_process	GO:0090305	nucleic acid phosphodiester bond hydrolysis
biological_process	GO:0071051	polyadenylation-dependent snoRNA 3'-end processing
biological_process	GO:0016075	rRNA catabolic process
biological_process	GO:0009845	seed germination
biological_process	GO:0034475	U4 snRNA 3'-end processing
cellular_component	GO:0000177	cytoplasmic exosome (RNase complex)
cellular_component	GO:0000176	nuclear exosome (RNase complex)
cellular_component	GO:0005730	nucleolus
molecular_function	GO:0008408	3'-5' exonuclease activity
molecular_function	GO:0016740	transferase activity