Cucsat.G17724.T7 (mRNA) Cucumber (B10) v3

Overview
NameCucsat.G17724.T7
TypemRNA
OrganismCucumis sativus L. var. sativus cv B10 (Cucumber (B10) v3)
DescriptionActin-related protein 2/3 complex subunit 4
Locationctg31: 573615 .. 579859 (+)
RNA-Seq ExpressionCucsat.G17724.T7
SyntenyCucsat.G17724.T7
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
GGTCGCTGGTTCGAATCCGGCAGGTCGGACTTTTTATTTTTTTCTTTTAATTTTGTTGATCCCTTCCTCTTTTAACTCTTCGAGTCTTTCTTTCCTTTGCTTTCTCCGGCGTCGGAGTTTTGGAGTTTCGGCGTCATTGTACCAACAGTTTCCTACACTCACCAGTTCGGTCCACAATCCAGCCTGTTTTCTCCCTCCAAGTTCTCACCTCAGGGCGCCAATCTTGATCTCCCAAAACTACTCTCTCCAATTCAGAAATGGTCGGTAACGAACAGTTCTTATCATCCTTGATCTTTGATTCGTTTGAAGTTGTCTACCGCTTGAATAATAACAATATCGTTGCGAATGAAGTTTATCCGTTTACTTACCAATGTCAGATTTAACTCACTTTCTTGGTGAAATTGTTGATGCTGATATACTCGGACGCTTTTGGATTCGTTTTTTTTTTTTTTTTTTTTTGCCGATTTTCTTCTTCATTTTGATATGGCTTGTGGAGGAAGCAAGCTTCACCTTGATGAACTCCTGATTTTGAGATGTTATTTGTTTAAATACTTGATTTCGGAATGAGATTGATCTTTTGTTTTTTTTTTTTTTTGTTTCTTTCTTCTTTTTCTACCTAATTTTCTGCCTGTATGTGTAAACTCAGGCAACTACTTTACGCTTGTATTTGACGTGCATACGGAACACTCTTGAGGCCGCCATGTGCCTTCAGGTATTTGTATCGTTGTTTTGTTGCTGTTTTTTTCAATTCATTTTCGTTTGAGTTGTGATTTTTTGCAGTTTGATTTATTATTTCTGCAACCAGAGTTATTAGGTTCGGTTAAAATTTTCATCCTACAAATTATTTGCCTTACGAACTTCAGGAATGCGATGTTGAATTGAACGCATTGCTTGTAATTGTTTCTCGAACACATAAGTTAATGTAATTTCATTGTAAGTGTGAGTAAAAATACTTCTGTACGCATGTAGTTTCCGTTCTGTTCAAAATGCTCTTTGTGAGAAAATATTCACCAAGTAACTTTTTGGTATATGATAATACATATAGAGAGTGAGGGCTTTTGGTAATGTCACATCTCTAAATTTTCTACTTATTATTGAAGGATAAATTGGACTATGATGTTGTTTTCTTTTACCCGCTTACCTCTTTCCTCTAGGAGGAACTTCATAGACATCCGGAATATCCTCCAAGTCACCAGTCTGAATGTTAAGAGAGAGTAGTGAATTCTAAGTATCTTTTAGTATTTACATTGACTTGGGAGTGAATGAACTATTCAGCTGTACATGACCAGTTACGTTTGTGTACGGTGTTCCTCCCTGCTACTTCTTGAAATTTTTTGTTTCACTTTGGATATTTGCTTTCTTTCTAATACAAACATCTCCTTGTTTTCACATGTATATGATGTTTGATCTATAAAACTTTTTTTTTTTCTCCGCATGATTACAGAATTTTCCTTGTCAAGAAGTTGAAAGACACAACAAGCCGGAAGTTGAACTAAAGTATGGATCTTCTAGTAATCTTAAAACCTCTTGCTGTATTTATTTATTGTAGATATATCCTTGCTTGCGAGTCAGTGGAGATCAGAATCGTCTAGTTAATAAGCTTATACATGAGCTCCCTTGTGAGCATTCTAGGGATCACTTATGGAGGATTTTAGTCTTGAGGATATCGAATAGCATTTTTCTTATCAATATTTGCATAGTTATAGCATTGTGATTATCATTCTAGTACGAAAAATTGTAGAGTGATTTTTTTTTTTTTTTTTTTTTTATAGAATTAACACCTTTCGTCGAGAAAAAAAATGAAAGAATACAAAGGCATACAAAAATGCCCACCAAAACACCCCATCTAAAAGAAGGGGGACTAACTAAGTAAAATGTTACCAATGAAATAGTTACAAAAGGTCTTCAAAATCGAACCTCAAACAGAAACGTGAAATCTAATCAAGGACCAAACCTCACTGTGCTCCCTTTCCTTACCACGGAACACCCGGTCATTCCCGTCCCTCCAAATGTTCCAAATATCAGCACACACCTCGAAAAGCCATGAAAACCCCCCTTTCTCTCTAAAGAGCGAATGGAGGAGGTTTTCCTCAATCATCAGGCAAATGCTCCGGTGGCCGGCATATCTAATGCCTTTTGCATAAAAAAACTCCACACGGTCTGAGCATATTGACAATCCCAAAAAAGGTGATTAAGGTCTCCTTTCGCCTTTCGACAGAGAAAGCAACAAAAATGCTTAACAAGTGAAGTCCTCCTCTTAACAAGTCTGTCAACAATGTTACCCGGCCAAACAAAACTTGCCAAATAAAAAATCTAACTTTCTTTGGAACCTTAGTCCTCCAAACCACTTCGAAAATAGACTCCGTGGGAGGAGAGGGATCCAACAACAAACTGAACAAAGATTTACACGTATATCCTCGACTGGGGTTAGGACTCCAAACTTGAGCACCCCTCCTTCCCTTCCTAAAGCTACACCCCTCAACCAAAGGAAGAAGAGAGACGACCTCCATCGCTTCCCTATTGGTCAAATTATGACGAAACCCAAAAGAACAAGACACGAGGTTCTCAGACCCAACTAAAAGATCCGACATCATGCAGTTTTTGGAGGAGAATAAATAATAAAGATGTGGAAATAAAGAGCAAAGGGAACTCTCCCCCACCCAATGATCCTCCAAAAATACATATCTTACCATCCCTCACAAAGCAACGAGTAAATTGAGAGAAGGCGGGAGCTCAAAAGAGACATCCTTCAAGGTTTGGGATATGTGCCTTTTAACCCCTTTCTCTGTCCATTCAAAAGGATGGGTACATTGCTTACACACGATAGTAGAATGGTTATCATTTGTAACTTGTAGAATGATTATCATACTTTTGTAGCTTTATCGCTCTTTTCCAATTGGAAAGGTCTTTTGTAACTACTCTTGGGGTTCTTCCCCCTTGTTTGGTAATTTCATATCATCAATGAAATTGTTTTCCAAAAGAAAAATTATCGTTCTATTGTGTTGGTCATATTTGGTTGCTGCATAGTTTTGTGTCACTTGTCTTACTTAAATTGCATGTTCTGGTTAGTTGAACCTGTGTTGGTAGTTGGTTAATAGCTATCTGTCTTGTGTCTGCTCTCATACACCAATCTCTGAGTACTGTTAGTTTGTTTGCTTACAGAATAGTAATTGAATTTTTACATGGATTGCACCCATGAAAGTTTTGCTGATTTGTGTTCGCTCTTATTTTCTTGTTCATTACCCTTTCCAGGACCAGCTCAGAACTTCTTCTCAATCCTGTAAGTTCATGTCATTAATGAGCATTCTGCCTTGACAATTTAGCTGCTTTATCATTTTGTGCTTTTTCTTTTTCTGGGGAGTTGGGGGGGCTCAGTGGAGGATGGAGTACATAGCTATTCATGCTGAGCAAAACTTGTGGAAACATCAAGCACTTATTTTCTTGGGGGATTGGAACGCATTTTTATCTACTGTGACATGTCAGCGTCAGCGCCTATGCATAATTTTCTAGTGATCCTTTTTTTCTTCCCTCTTTTTATTTTCTTCAATTGGAGAATCATGTTCATGCAAAAAGAGCATACTTAGGAGTTGGGAGTAGTTGGGGAATGACTTATATATTTATTTAAGGACACATGTGATCTTGCTATATTATATTGCTCTTGCAGATCTTAATATGTAGAAATGAGTCAGAGAAATGTTTGATTGAGACATCTATAAACTCTCTCCGTATCAGTCTCAAGGTAATTTTATTCTCTTTGTTCTAATTTGATGCATTAGAGGCATATGTACTACCATAAACTCTTTTCTCTCCATTCCTTTGATCCACTTACCTGATGAAACACCGCTGGATGTGTACAATTATTATCATAGATTGCCATCAACTTGTTCACAATAATTTTATTTGAATTTTTTCTTGTGCTCAGGTTAAGCAGACAGACGAACTAGAGAATATCCTAACTAAAAAGTTCCTTCGATTTCTGTCAATGAGGGCAGAAGCATTCCAGGTGTTGAGAAGAAAACCTGTACAGGTACCACGATGATTCTAATCTTGACTTTAGCTTTGTTCTTTAGTTCAAGATGACATATTACAGCGAGTGTGAACTATTCTTCTAAAAACAAAAGTTAAACTTTCAAGTATTGGAGATTATTTGTGACGAATCACTTGAAAATACTTGGAACTGTACTACTAGGATGATTGTGTCTTCTGAATCCTCAAGTTTCCACGAAGTCATATTTTATTTCTCTTGGAGGGCATGATATTGAAACTGGTCTACCCTCTATTGAGAGAGAACTGAAAGGCGAGTTCTAGGTTCATTTGTCTTATTCATCTTTGTTGAAGGAGATAAGAGACATCCTCCAATTTCATTTATTTATTCTCTTATTGCCAGTGTGAACAGTAAAATAACTGAATTTATAGGCTATAATATTGAGATGCTATTTAGCGACAACTATTTGTGCCTGCATAGCTAGTTGTCTTGGTTTTGATGACCTAAAAATAATCTGATTAATTGATTTATGTTGTGGTATTAAACCTTTATAACCATGCATGTCTTGTCTTTAAGAGTCAACGATTCTGGATTAATTATCTCCTATTTTTTCTCTCTTCCCTTCCATATAACTAAAAATAATTATTATAAGCGACAAGCCTCTAACATGAATCCATCCTGGTCAATTGTTTTTCTATAAAGAAACTATGTTTTCTTTTCCGATATGAACTACTTCCTCCATAATTGTTTATATTCTTTGCCAGTATTCTAGACCATATTCCAGATTTGCTATTTTGTTTGCAAAACATAAGTAGTGTCCTTCAGAATTCATCTCTTATTTCTTTTTGGCTTTCATTACAGGGATACGACATTAGCTTTCTCATAACGAACTATCATTGTGAGGACATGCAGAAGCAAAAACTCATTGATTTTATTGTACAGTTTATGGAGGCAAGATAACACCACCTCAATCAATTTGTAGCTATTTACTTGATTTCATTTTCTTCTGCTTAATTATCTCTTTGATTTTCTTTTCTCATCAACTGAATTTTCTATATGCTTTTTATCCTAATGAACATACACTATTTCAAAAAGTTTCTCGAACTTGTCTTGGAGTTCATAACTGAATATTTCTTTTATGTAAAAATCCTTCCGTCATTGGCTTTCACAACTTCAAACTGTTCTGCACAAATTTAAGAGCTAACATTTATAATTCCCTTTTGTGGAATTGTTTATGTAATGATCGAAGAGAAATTTATCGAATTGAGAGCTTGTTGAATAATCCTTTTATTTCCCCTCATTTGTGCAGGATATTGATAAAGAGATTAGTGAACTTAAAATGTCCGTGAACACTCGAGGAAGGCTTGTAGCAACAGAGTTTCTAAAGCAATTCATATGATGTCTCTTTCTCTATCTAGGTAAACTCCCCTTTCCCCAAATTTTTCTTCAAGATCATTCTATTGCTACTTGTTAATTATATATATATCCTTGTACCTCATTTAACAAGATTTATTCCTCTTATATTTTAATTTTATGCTACCTAATATTGGGTTTAGGATTTGATCCAAAAATACATAGTTGATGAATAAAGCTATACTTGGGTTTGGCGTTGTAAACCCAATGTCCAAAAAGATTATGTAAAAGAGGTTTTTGAAGGGATAAATGAATTGAAATAGAAGAGAACTAAGAACAGATAAAGCATAGGACAGCTTGTCCGGATAACTTCCAATAAAAGAAAAGAGCTTACGAAGCACACTCTCAATGAGATTGTCTTTGATGCCTTCTCAGGCCTTCAAAGATTGTCAAAACCTTTCACGAGGGAATGGGAGACCCACGAGAGTCTCACACAAAATGACAAATCCACCCTTTTTATCAATTTTATTAGAGATTTTAGGCTTTTCTGGTCGTTAAGAATTAAGATTGTGTCCAAATCCATTGGTTTTCTTTTTATCATTTTGTTGCTGTAAGTATTTACGCAAACCTCTGCACTTTAAAATCTCTTTTGCTTCCTTAAATCGCTTTTTTTGTAATCATAAAATTCTTTTTTCATTTCAGTTCTTTCTTATTCTCCCTAACCCTAATTTAATCATACGGCTATCTACATTACTACCCTAGTTAAATAGGTCCAGTTAGCCTAAAGTTACAATTCTTTTCACTAATAGCCTAATGAGTCACAATATTTCATTAAAAAAAGGGTCAAAATGTCATTATACATCTTTGCACATTTAATCTTACGGGTTTTCAAATAAATAAATATAAT

Coding sequence (CDS)

ATGTCAGCGTCAGCGCCTATGCATAATTTTCTAATCTTAATATGTAGAAATGAGTCAGAGAAATGTTTGATTGAGACATCTATAAACTCTCTCCGTATCAGTCTCAAGGTTAAGCAGACAGACGAACTAGAGAATATCCTAACTAAAAAGTTCCTTCGATTTCTGTCAATGAGGGCAGAAGCATTCCAGGTGTTGAGAAGAAAACCTGTACAGGGATACGACATTAGCTTTCTCATAACGAACTATCATTGTGAGGACATGCAGAAGCAAAAACTCATTGATTTTATTGTACAGTTTATGGAGGATATTGATAAAGAGATTAGTGAACTTAAAATGTCCGTGAACACTCGAGGAAGGCTTGTAGCAACAGAGTTTCTAAAGCAATTCATATGA

Protein sequence

MSASAPMHNFLILICRNESEKCLIETSINSLRISLKVKQTDELENILTKKFLRFLSMRAEAFQVLRRKPVQGYDISFLITNYHCEDMQKQKLIDFIVQFMEDIDKEISELKMSVNTRGRLVATEFLKQFI
Homology
[Close]
BLAST of Cucsat.G17724.T7 vs. ExPASy Swiss-Prot
Match: F4JUL9 (Actin-related protein 2/3 complex subunit 4 OS=Arabidopsis thaliana OX=3702 GN=ARPC4 PE=1 SV=1)

HSP 1 Score: 216.1 bits (549), Expect = 2.4e-55
Identity = 109/119 (91.60%), Postives = 116/119 (97.48%), Query Frame = 0 

Query: 12  ILICRNESEKCLIETSINSLRISLKVKQTDELENILTKKFLRFLSMRAEAFQVLRRKPVQ 71
           +LICRNE+EKCLIETSINSLRISLKVKQ DELENILTKKFLRFLSMRAEAFQVLRRKPVQ
Sbjct: 51  VLICRNEAEKCLIETSINSLRISLKVKQADELENILTKKFLRFLSMRAEAFQVLRRKPVQ 110

Query: 72  GYDISFLITNYHCEDMQKQKLIDFIVQFMEDIDKEISELKMSVNTRGRLVATEFLKQFI 131
           GYDISFLITNYHCE+MQKQKLIDFI+QFMEDI+KEI +LK SVNTRGRLVATEFLKQF+
Sbjct: 111 GYDISFLITNYHCEEMQKQKLIDFIIQFMEDIEKEIRDLKESVNTRGRLVATEFLKQFM 169

[Close]
BLAST of Cucsat.G17724.T7 vs. ExPASy Swiss-Prot
Match: O96625 (Actin-related protein 2/3 complex subunit 4 OS=Dictyostelium discoideum OX=44689 GN=arcD PE=1 SV=1)

HSP 1 Score: 162.9 bits (411), Expect = 2.4e-39
Identity = 76/118 (64.41%), Postives = 104/118 (88.14%), Query Frame = 0 

Query: 12  ILICRNESEKCLIETSINSLRISLKVKQTDELENILTKKFLRFLSMRAEAFQVLRRKPVQ 71
           ++I RN++E+ LIETSINS+RIS+ +K++DE++ IL KKF+RFL  RAE F +LRRKPV+
Sbjct: 51  VIIARNKNERVLIETSINSIRISVSIKKSDEVDVILAKKFVRFLQQRAENFIILRRKPVE 110

Query: 72  GYDISFLITNYHCEDMQKQKLIDFIVQFMEDIDKEISELKMSVNTRGRLVATEFLKQF 130
           GYDISFL+TN+H E+M K KL+DFI+QFMEDID+EIS+LK+++N RGR+VA+E+LK F
Sbjct: 111 GYDISFLVTNFHTENMFKHKLVDFIIQFMEDIDREISDLKLTLNARGRIVASEYLKNF 168

[Close]
BLAST of Cucsat.G17724.T7 vs. ExPASy Swiss-Prot
Match: Q641G7 (Actin-related protein 2/3 complex subunit 4 OS=Xenopus laevis OX=8355 GN=arpc4 PE=1 SV=1)

HSP 1 Score: 162.5 bits (410), Expect = 3.1e-39
Identity = 79/118 (66.95%), Postives = 97/118 (82.20%), Query Frame = 0 

Query: 12  ILICRNESEKCLIETSINSLRISLKVKQTDELENILTKKFLRFLSMRAEAFQVLRRKPVQ 71
           ++I RNE EK LIE SINS+R+S+ VKQ DE+E IL  KF+RF+ MRAE F +LRRKPV+
Sbjct: 51  VVISRNEKEKVLIEGSINSVRVSIAVKQADEIEKILCHKFMRFMMMRAENFFILRRKPVE 110

Query: 72  GYDISFLITNYHCEDMQKQKLIDFIVQFMEDIDKEISELKMSVNTRGRLVATEFLKQF 130
           GYDISFLITN+H E M K KL+DF++ FME+IDKEISE+K+SVN R R+VA EFLK F
Sbjct: 111 GYDISFLITNFHTEQMYKHKLVDFVIHFMEEIDKEISEMKLSVNARARIVAEEFLKNF 168

[Close]
BLAST of Cucsat.G17724.T7 vs. ExPASy Swiss-Prot
Match: Q148J6 (Actin-related protein 2/3 complex subunit 4 OS=Bos taurus OX=9913 GN=ARPC4 PE=1 SV=3)

HSP 1 Score: 161.8 bits (408), Expect = 5.3e-39
Identity = 79/118 (66.95%), Postives = 96/118 (81.36%), Query Frame = 0 

Query: 12  ILICRNESEKCLIETSINSLRISLKVKQTDELENILTKKFLRFLSMRAEAFQVLRRKPVQ 71
           + I RNE EK LIE SINS+R+S+ VKQ DE+E IL  KF+RF+ MRAE F +LRRKPV+
Sbjct: 51  VTISRNEKEKVLIEGSINSVRVSIAVKQADEIEKILCHKFMRFMMMRAENFFILRRKPVE 110

Query: 72  GYDISFLITNYHCEDMQKQKLIDFIVQFMEDIDKEISELKMSVNTRGRLVATEFLKQF 130
           GYDISFLITN+H E M K KL+DF++ FME+IDKEISE+K+SVN R R+VA EFLK F
Sbjct: 111 GYDISFLITNFHTEQMYKHKLVDFVIHFMEEIDKEISEMKLSVNARARIVAEEFLKNF 168

[Close]
BLAST of Cucsat.G17724.T7 vs. ExPASy Swiss-Prot
Match: P59998 (Actin-related protein 2/3 complex subunit 4 OS=Homo sapiens OX=9606 GN=ARPC4 PE=1 SV=3)

HSP 1 Score: 161.8 bits (408), Expect = 5.3e-39
Identity = 79/118 (66.95%), Postives = 96/118 (81.36%), Query Frame = 0 

Query: 12  ILICRNESEKCLIETSINSLRISLKVKQTDELENILTKKFLRFLSMRAEAFQVLRRKPVQ 71
           + I RNE EK LIE SINS+R+S+ VKQ DE+E IL  KF+RF+ MRAE F +LRRKPV+
Sbjct: 51  VTISRNEKEKVLIEGSINSVRVSIAVKQADEIEKILCHKFMRFMMMRAENFFILRRKPVE 110

Query: 72  GYDISFLITNYHCEDMQKQKLIDFIVQFMEDIDKEISELKMSVNTRGRLVATEFLKQF 130
           GYDISFLITN+H E M K KL+DF++ FME+IDKEISE+K+SVN R R+VA EFLK F
Sbjct: 111 GYDISFLITNFHTEQMYKHKLVDFVIHFMEEIDKEISEMKLSVNARARIVAEEFLKNF 168

[Close]
BLAST of Cucsat.G17724.T7 vs. NCBI nr
Match: XP_016902070.1 (PREDICTED: actin-related protein 2/3 complex subunit 4 isoform X3 [Cucumis melo] >XP_038907197.1 actin-related protein 2/3 complex subunit 4 isoform X2 [Benincasa hispida])

HSP 1 Score: 232 bits (592), Expect = 3.91e-76
Identity = 119/119 (100.00%), Postives = 119/119 (100.00%), Query Frame = 0 

Query: 12  ILICRNESEKCLIETSINSLRISLKVKQTDELENILTKKFLRFLSMRAEAFQVLRRKPVQ 71
           ILICRNESEKCLIETSINSLRISLKVKQTDELENILTKKFLRFLSMRAEAFQVLRRKPVQ
Sbjct: 32  ILICRNESEKCLIETSINSLRISLKVKQTDELENILTKKFLRFLSMRAEAFQVLRRKPVQ 91

Query: 72  GYDISFLITNYHCEDMQKQKLIDFIVQFMEDIDKEISELKMSVNTRGRLVATEFLKQFI 130
           GYDISFLITNYHCEDMQKQKLIDFIVQFMEDIDKEISELKMSVNTRGRLVATEFLKQFI
Sbjct: 92  GYDISFLITNYHCEDMQKQKLIDFIVQFMEDIDKEISELKMSVNTRGRLVATEFLKQFI 150

[Close]
BLAST of Cucsat.G17724.T7 vs. NCBI nr
Match: XP_008457158.1 (PREDICTED: actin-related protein 2/3 complex subunit 4 isoform X2 [Cucumis melo] >XP_031736665.1 actin-related protein 2/3 complex subunit 4 isoform X2 [Cucumis sativus])

HSP 1 Score: 232 bits (592), Expect = 4.18e-76
Identity = 119/119 (100.00%), Postives = 119/119 (100.00%), Query Frame = 0 

Query: 12  ILICRNESEKCLIETSINSLRISLKVKQTDELENILTKKFLRFLSMRAEAFQVLRRKPVQ 71
           ILICRNESEKCLIETSINSLRISLKVKQTDELENILTKKFLRFLSMRAEAFQVLRRKPVQ
Sbjct: 34  ILICRNESEKCLIETSINSLRISLKVKQTDELENILTKKFLRFLSMRAEAFQVLRRKPVQ 93

Query: 72  GYDISFLITNYHCEDMQKQKLIDFIVQFMEDIDKEISELKMSVNTRGRLVATEFLKQFI 130
           GYDISFLITNYHCEDMQKQKLIDFIVQFMEDIDKEISELKMSVNTRGRLVATEFLKQFI
Sbjct: 94  GYDISFLITNYHCEDMQKQKLIDFIVQFMEDIDKEISELKMSVNTRGRLVATEFLKQFI 152

[Close]
BLAST of Cucsat.G17724.T7 vs. NCBI nr
Match: XP_008457157.1 (PREDICTED: actin-related protein 2/3 complex subunit 4 isoform X1 [Cucumis melo])

HSP 1 Score: 232 bits (592), Expect = 7.37e-76
Identity = 119/119 (100.00%), Postives = 119/119 (100.00%), Query Frame = 0 

Query: 12  ILICRNESEKCLIETSINSLRISLKVKQTDELENILTKKFLRFLSMRAEAFQVLRRKPVQ 71
           ILICRNESEKCLIETSINSLRISLKVKQTDELENILTKKFLRFLSMRAEAFQVLRRKPVQ
Sbjct: 51  ILICRNESEKCLIETSINSLRISLKVKQTDELENILTKKFLRFLSMRAEAFQVLRRKPVQ 110

Query: 72  GYDISFLITNYHCEDMQKQKLIDFIVQFMEDIDKEISELKMSVNTRGRLVATEFLKQFI 130
           GYDISFLITNYHCEDMQKQKLIDFIVQFMEDIDKEISELKMSVNTRGRLVATEFLKQFI
Sbjct: 111 GYDISFLITNYHCEDMQKQKLIDFIVQFMEDIDKEISELKMSVNTRGRLVATEFLKQFI 169

[Close]
BLAST of Cucsat.G17724.T7 vs. NCBI nr
Match: XP_011649071.1 (actin-related protein 2/3 complex subunit 4 isoform X1 [Cucumis sativus] >XP_038907196.1 actin-related protein 2/3 complex subunit 4 isoform X1 [Benincasa hispida] >KGN61430.1 hypothetical protein Csa_006614 [Cucumis sativus])

HSP 1 Score: 232 bits (592), Expect = 7.37e-76
Identity = 119/119 (100.00%), Postives = 119/119 (100.00%), Query Frame = 0 

Query: 12  ILICRNESEKCLIETSINSLRISLKVKQTDELENILTKKFLRFLSMRAEAFQVLRRKPVQ 71
           ILICRNESEKCLIETSINSLRISLKVKQTDELENILTKKFLRFLSMRAEAFQVLRRKPVQ
Sbjct: 51  ILICRNESEKCLIETSINSLRISLKVKQTDELENILTKKFLRFLSMRAEAFQVLRRKPVQ 110

Query: 72  GYDISFLITNYHCEDMQKQKLIDFIVQFMEDIDKEISELKMSVNTRGRLVATEFLKQFI 130
           GYDISFLITNYHCEDMQKQKLIDFIVQFMEDIDKEISELKMSVNTRGRLVATEFLKQFI
Sbjct: 111 GYDISFLITNYHCEDMQKQKLIDFIVQFMEDIDKEISELKMSVNTRGRLVATEFLKQFI 169

[Close]
BLAST of Cucsat.G17724.T7 vs. NCBI nr
Match: XP_008456149.1 (PREDICTED: actin-related protein 2/3 complex subunit 4-like [Cucumis melo] >XP_008456150.1 PREDICTED: actin-related protein 2/3 complex subunit 4-like [Cucumis melo] >XP_008456151.1 PREDICTED: actin-related protein 2/3 complex subunit 4-like [Cucumis melo] >XP_008456152.1 PREDICTED: actin-related protein 2/3 complex subunit 4-like [Cucumis melo] >XP_008456153.1 PREDICTED: actin-related protein 2/3 complex subunit 4-like [Cucumis melo] >XP_008456154.1 PREDICTED: actin-related protein 2/3 complex subunit 4-like [Cucumis melo] >XP_008456156.1 PREDICTED: actin-related protein 2/3 complex subunit 4-like [Cucumis melo] >XP_016901908.1 PREDICTED: actin-related protein 2/3 complex subunit 4-like [Cucumis melo] >XP_016901909.1 PREDICTED: actin-related protein 2/3 complex subunit 4-like [Cucumis melo])

HSP 1 Score: 230 bits (587), Expect = 4.26e-75
Identity = 117/119 (98.32%), Postives = 119/119 (100.00%), Query Frame = 0 

Query: 12  ILICRNESEKCLIETSINSLRISLKVKQTDELENILTKKFLRFLSMRAEAFQVLRRKPVQ 71
           ILICRNESEKCLIETSINSLRISLKV+QTDELENILTKKFLRFLSMRAEAFQVLRRKPVQ
Sbjct: 51  ILICRNESEKCLIETSINSLRISLKVRQTDELENILTKKFLRFLSMRAEAFQVLRRKPVQ 110

Query: 72  GYDISFLITNYHCEDMQKQKLIDFIVQFMEDIDKEISELKMSVNTRGRLVATEFLKQFI 130
           GYDISFLITNYHCEDMQKQKLIDFIVQFMEDIDKEISELKMSVNTRGRLVATEFLKQF+
Sbjct: 111 GYDISFLITNYHCEDMQKQKLIDFIVQFMEDIDKEISELKMSVNTRGRLVATEFLKQFL 169

[Close]
BLAST of Cucsat.G17724.T7 vs. ExPASy TrEMBL
Match: A0A1S4E268 (actin-related protein 2/3 complex subunit 4 isoform X3 OS=Cucumis melo OX=3656 GN=LOC103496896 PE=3 SV=1)

HSP 1 Score: 232 bits (592), Expect = 1.89e-76
Identity = 119/119 (100.00%), Postives = 119/119 (100.00%), Query Frame = 0 

Query: 12  ILICRNESEKCLIETSINSLRISLKVKQTDELENILTKKFLRFLSMRAEAFQVLRRKPVQ 71
           ILICRNESEKCLIETSINSLRISLKVKQTDELENILTKKFLRFLSMRAEAFQVLRRKPVQ
Sbjct: 32  ILICRNESEKCLIETSINSLRISLKVKQTDELENILTKKFLRFLSMRAEAFQVLRRKPVQ 91

Query: 72  GYDISFLITNYHCEDMQKQKLIDFIVQFMEDIDKEISELKMSVNTRGRLVATEFLKQFI 130
           GYDISFLITNYHCEDMQKQKLIDFIVQFMEDIDKEISELKMSVNTRGRLVATEFLKQFI
Sbjct: 92  GYDISFLITNYHCEDMQKQKLIDFIVQFMEDIDKEISELKMSVNTRGRLVATEFLKQFI 150

[Close]
BLAST of Cucsat.G17724.T7 vs. ExPASy TrEMBL
Match: A0A1S3C653 (Actin-related protein 2/3 complex subunit 4 OS=Cucumis melo OX=3656 GN=LOC103496896 PE=3 SV=1)

HSP 1 Score: 232 bits (592), Expect = 2.02e-76
Identity = 119/119 (100.00%), Postives = 119/119 (100.00%), Query Frame = 0 

Query: 12  ILICRNESEKCLIETSINSLRISLKVKQTDELENILTKKFLRFLSMRAEAFQVLRRKPVQ 71
           ILICRNESEKCLIETSINSLRISLKVKQTDELENILTKKFLRFLSMRAEAFQVLRRKPVQ
Sbjct: 34  ILICRNESEKCLIETSINSLRISLKVKQTDELENILTKKFLRFLSMRAEAFQVLRRKPVQ 93

Query: 72  GYDISFLITNYHCEDMQKQKLIDFIVQFMEDIDKEISELKMSVNTRGRLVATEFLKQFI 130
           GYDISFLITNYHCEDMQKQKLIDFIVQFMEDIDKEISELKMSVNTRGRLVATEFLKQFI
Sbjct: 94  GYDISFLITNYHCEDMQKQKLIDFIVQFMEDIDKEISELKMSVNTRGRLVATEFLKQFI 152

[Close]
BLAST of Cucsat.G17724.T7 vs. ExPASy TrEMBL
Match: A0A0A0LHM5 (Actin-related protein 2/3 complex subunit 4 OS=Cucumis sativus OX=3659 GN=Csa_2G120960 PE=3 SV=1)

HSP 1 Score: 232 bits (592), Expect = 3.57e-76
Identity = 119/119 (100.00%), Postives = 119/119 (100.00%), Query Frame = 0 

Query: 12  ILICRNESEKCLIETSINSLRISLKVKQTDELENILTKKFLRFLSMRAEAFQVLRRKPVQ 71
           ILICRNESEKCLIETSINSLRISLKVKQTDELENILTKKFLRFLSMRAEAFQVLRRKPVQ
Sbjct: 51  ILICRNESEKCLIETSINSLRISLKVKQTDELENILTKKFLRFLSMRAEAFQVLRRKPVQ 110

Query: 72  GYDISFLITNYHCEDMQKQKLIDFIVQFMEDIDKEISELKMSVNTRGRLVATEFLKQFI 130
           GYDISFLITNYHCEDMQKQKLIDFIVQFMEDIDKEISELKMSVNTRGRLVATEFLKQFI
Sbjct: 111 GYDISFLITNYHCEDMQKQKLIDFIVQFMEDIDKEISELKMSVNTRGRLVATEFLKQFI 169

[Close]
BLAST of Cucsat.G17724.T7 vs. ExPASy TrEMBL
Match: A0A1S3C5J1 (Actin-related protein 2/3 complex subunit 4 OS=Cucumis melo OX=3656 GN=LOC103496896 PE=3 SV=1)

HSP 1 Score: 232 bits (592), Expect = 3.57e-76
Identity = 119/119 (100.00%), Postives = 119/119 (100.00%), Query Frame = 0 

Query: 12  ILICRNESEKCLIETSINSLRISLKVKQTDELENILTKKFLRFLSMRAEAFQVLRRKPVQ 71
           ILICRNESEKCLIETSINSLRISLKVKQTDELENILTKKFLRFLSMRAEAFQVLRRKPVQ
Sbjct: 51  ILICRNESEKCLIETSINSLRISLKVKQTDELENILTKKFLRFLSMRAEAFQVLRRKPVQ 110

Query: 72  GYDISFLITNYHCEDMQKQKLIDFIVQFMEDIDKEISELKMSVNTRGRLVATEFLKQFI 130
           GYDISFLITNYHCEDMQKQKLIDFIVQFMEDIDKEISELKMSVNTRGRLVATEFLKQFI
Sbjct: 111 GYDISFLITNYHCEDMQKQKLIDFIVQFMEDIDKEISELKMSVNTRGRLVATEFLKQFI 169

[Close]
BLAST of Cucsat.G17724.T7 vs. ExPASy TrEMBL
Match: A0A1S3C2N8 (Actin-related protein 2/3 complex subunit 4 OS=Cucumis melo OX=3656 GN=LOC103496175 PE=3 SV=1)

HSP 1 Score: 230 bits (587), Expect = 2.06e-75
Identity = 117/119 (98.32%), Postives = 119/119 (100.00%), Query Frame = 0 

Query: 12  ILICRNESEKCLIETSINSLRISLKVKQTDELENILTKKFLRFLSMRAEAFQVLRRKPVQ 71
           ILICRNESEKCLIETSINSLRISLKV+QTDELENILTKKFLRFLSMRAEAFQVLRRKPVQ
Sbjct: 51  ILICRNESEKCLIETSINSLRISLKVRQTDELENILTKKFLRFLSMRAEAFQVLRRKPVQ 110

Query: 72  GYDISFLITNYHCEDMQKQKLIDFIVQFMEDIDKEISELKMSVNTRGRLVATEFLKQFI 130
           GYDISFLITNYHCEDMQKQKLIDFIVQFMEDIDKEISELKMSVNTRGRLVATEFLKQF+
Sbjct: 111 GYDISFLITNYHCEDMQKQKLIDFIVQFMEDIDKEISELKMSVNTRGRLVATEFLKQFL 169

The following BLAST results are available for this feature:
BLAST of Cucsat.G17724.T7 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
F4JUL92.4e-5591.60Actin-related protein 2/3 complex subunit 4 OS=Arabidopsis thaliana OX=3702 GN=A... [more]
O966252.4e-3964.41Actin-related protein 2/3 complex subunit 4 OS=Dictyostelium discoideum OX=44689... [more]
Q641G73.1e-3966.95Actin-related protein 2/3 complex subunit 4 OS=Xenopus laevis OX=8355 GN=arpc4 P... [more]
Q148J65.3e-3966.95Actin-related protein 2/3 complex subunit 4 OS=Bos taurus OX=9913 GN=ARPC4 PE=1 ... [more]
P599985.3e-3966.95Actin-related protein 2/3 complex subunit 4 OS=Homo sapiens OX=9606 GN=ARPC4 PE=... [more]
BLAST of Cucsat.G17724.T7 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_016902070.13.91e-76100.00PREDICTED: actin-related protein 2/3 complex subunit 4 isoform X3 [Cucumis melo]... [more]
XP_008457158.14.18e-76100.00PREDICTED: actin-related protein 2/3 complex subunit 4 isoform X2 [Cucumis melo]... [more]
XP_008457157.17.37e-76100.00PREDICTED: actin-related protein 2/3 complex subunit 4 isoform X1 [Cucumis melo][more]
XP_011649071.17.37e-76100.00actin-related protein 2/3 complex subunit 4 isoform X1 [Cucumis sativus] >XP_038... [more]
XP_008456149.14.26e-7598.32PREDICTED: actin-related protein 2/3 complex subunit 4-like [Cucumis melo] >XP_0... [more]
BLAST of Cucsat.G17724.T7 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A1S4E2681.89e-76100.00actin-related protein 2/3 complex subunit 4 isoform X3 OS=Cucumis melo OX=3656 G... [more]
A0A1S3C6532.02e-76100.00Actin-related protein 2/3 complex subunit 4 OS=Cucumis melo OX=3656 GN=LOC103496... [more]
A0A0A0LHM53.57e-76100.00Actin-related protein 2/3 complex subunit 4 OS=Cucumis sativus OX=3659 GN=Csa_2G... [more]
A0A1S3C5J13.57e-76100.00Actin-related protein 2/3 complex subunit 4 OS=Cucumis melo OX=3656 GN=LOC103496... [more]
A0A1S3C2N82.06e-7598.32Actin-related protein 2/3 complex subunit 4 OS=Cucumis melo OX=3656 GN=LOC103496... [more]
InterPro
Analysis Name: InterPro Annotations of Cucumber (B10) v3
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR008384Actin-related protein 2/3 complex subunit 4PFAMPF05856ARPC4coord: 12..128
e-value: 1.2E-54
score: 184.4
IPR008384Actin-related protein 2/3 complex subunit 4PANTHERPTHR22629ARP2/3 COMPLEX 20 KD SUBUNITcoord: 12..129
IPR034666Arp2/3 complex subunit 2/4GENE3D3.30.1460.20coord: 3..129
e-value: 4.2E-57
score: 194.2
IPR034666Arp2/3 complex subunit 2/4SUPERFAMILY69645Arp2/3 complex subunitscoord: 12..129
NoneNo IPR availablePANTHERPTHR22629:SF0ACTIN-RELATED PROTEIN 2/3 COMPLEX SUBUNIT 4coord: 12..129

Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Cucsat.G17724Cucsat.G17724gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Cucsat.G17724.T7.E1Cucsat.G17724.T7.E1exon
Cucsat.G17724.T7.E2Cucsat.G17724.T7.E2exon
Cucsat.G17724.T7.E3Cucsat.G17724.T7.E3exon
Cucsat.G17724.T7.E4Cucsat.G17724.T7.E4exon
Cucsat.G17724.T7.E5Cucsat.G17724.T7.E5exon
Cucsat.G17724.T7.E6Cucsat.G17724.T7.E6exon
Cucsat.G17724.T7.E7Cucsat.G17724.T7.E7exon
Cucsat.G17724.T7.E8Cucsat.G17724.T7.E8exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Cucsat.G17724.T7.C1Cucsat.G17724.T7.C1CDS
Cucsat.G17724.T7.C2Cucsat.G17724.T7.C2CDS
Cucsat.G17724.T7.C3Cucsat.G17724.T7.C3CDS
Cucsat.G17724.T7.C4Cucsat.G17724.T7.C4CDS
Cucsat.G17724.T7.C5Cucsat.G17724.T7.C5CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Cucsat.G17724.T7Cucsat.G17724.T7-proteinpolypeptide


GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0030041 actin filament polymerization
biological_process GO:0034314 Arp2/3 complex-mediated actin nucleation
biological_process GO:0030833 regulation of actin filament polymerization
cellular_component GO:0015629 actin cytoskeleton
cellular_component GO:0005885 Arp2/3 protein complex
cellular_component GO:0005737 cytoplasm
molecular_function GO:0051015 actin filament binding