Cucsat.G17724 (gene) Cucumber (B10) v3

Overview


Name	Cucsat.G17724
Type	gene
Organism	Cucumis sativus L. var. sativus cv B10 (Cucumber (B10) v3)
Description	Actin-related protein 2/3 complex subunit 4
Location	ctg31: 573660 .. 579859 (+)
RNA-Seq Expression	Cucsat.G17724
Synteny	Cucsat.G17724

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

AGGACTGTAGTCGTAATCGCAGTTGAATCCTTAGGTCGCTGGTTCGAATCCGGCAGGTCGGACTTTTTATTTTTTTCTTTTAATTTTGTTGATCCCTTCCTCTTTTAACTCTTCGAGTCTTTCTTTCCTTTGCTTTCTCCGGCGTCGGAGTTTTGGAGTTTCGGCGTCATTGTACCAACAGTTTCCTACACTCACCAGTTCGGTCCACAATCCAGCCTGTTTTCTCCCTCCAAGTTCTCACCTCAGGGCGCCAATCTTGATCTCCCAAAACTACTCTCTCCAATTCAGAAATGGTCGGTAACGAACAGTTCTTATCATCCTTGATCTTTGATTCGTTTGAAGTTGTCTACCGCTTGAATAATAACAATATCGTTGCGAATGAAGTTTATCCGTTTACTTACCAATGTCAGATTTAACTCACTTTCTTGGTGAAATTGTTGATGCTGATATACTCGGACGCTTTTGGATTCGTTTTTTTTTTTTTTTTTTTTTGCCGATTTTCTTCTTCATTTTGATATGGCTTGTGGAGGAAGCAAGCTTCACCTTGATGAACTCCTGATTTTGAGATGTTATTTGTTTAAATACTTGATTTCGGAATGAGATTGATCTTTTGTTTTTTTTTTTTTTTGTTTCTTTCTTCTTTTTCTACCTAATTTTCTGCCTGTATGTGTAAACTCAGGCAACTACTTTACGCTTGTATTTGACGTGCATACGGAACACTCTTGAGGCCGCCATGTGCCTTCAGGTATTTGTATCGTTGTTTTGTTGCTGTTTTTTTCAATTCATTTTCGTTTGAGTTGTGATTTTTTGCAGTTTGATTTATTATTTCTGCAACCAGAGTTATTAGGTTCGGTTAAAATTTTCATCCTACAAATTATTTGCCTTACGAACTTCAGGAATGCGATGTTGAATTGAACGCATTGCTTGTAATTGTTTCTCGAACACATAAGTTAATGTAATTTCATTGTAAGTGTGAGTAAAAATACTTCTGTACGCATGTAGTTTCCGTTCTGTTCAAAATGCTCTTTGTGAGAAAATATTCACCAAGTAACTTTTTGGTATATGATAATACATATAGAGAGTGAGGGCTTTTGGTAATGTCACATCTCTAAATTTTCTACTTATTATTGAAGGATAAATTGGACTATGATGTTGTTTTCTTTTACCCGCTTACCTCTTTCCTCTAGGAGGAACTTCATAGACATCCGGAATATCCTCCAAGTCACCAGTCTGAATGTTAAGAGAGAGTAGTGAATTCTAAGTATCTTTTAGTATTTACATTGACTTGGGAGTGAATGAACTATTCAGCTGTACATGACCAGTTACGTTTGTGTACGGTGTTCCTCCCTGCTACTTCTTGAAATTTTTTGTTTCACTTTGGATATTTGCTTTCTTTCTAATACAAACATCTCCTTGTTTTCACATGTATATGATGTTTGATCTATAAAACTTTTTTTTTTTCTCCGCATGATTACAGAATTTTCCTTGTCAAGAAGTTGAAAGACACAACAAGCCGGAAGTTGAACTAAAGTATGGATCTTCTAGTAATCTTAAAACCTCTTGCTGTATTTATTTATTGTAGATATATCCTTGCTTGCGAGTCAGTGGAGATCAGAATCGTCTAGTTAATAAGCTTATACATGAGCTCCCTTGTGAGCATTCTAGGGATCACTTATGGAGGATTTTAGTCTTGAGGATATCGAATAGCATTTTTCTTATCAATATTTGCATAGTTATAGCATTGTGATTATCATTCTAGTACGAAAAATTGTAGAGTGATTTTTTTTTTTTTTTTTTTTTTATAGAATTAACACCTTTCGTCGAGAAAAAAAATGAAAGAATACAAAGGCATACAAAAATGCCCACCAAAACACCCCATCTAAAAGAAGGGGGACTAACTAAGTAAAATGTTACCAATGAAATAGTTACAAAAGGTCTTCAAAATCGAACCTCAAACAGAAACGTGAAATCTAATCAAGGACCAAACCTCACTGTGCTCCCTTTCCTTACCACGGAACACCCGGTCATTCCCGTCCCTCCAAATGTTCCAAATATCAGCACACACCTCGAAAAGCCATGAAAACCCCCCTTTCTCTCTAAAGAGCGAATGGAGGAGGTTTTCCTCAATCATCAGGCAAATGCTCCGGTGGCCGGCATATCTAATGCCTTTTGCATAAAAAAACTCCACACGGTCTGAGCATATTGACAATCCCAAAAAAGGTGATTAAGGTCTCCTTTCGCCTTTCGACAGAGAAAGCAACAAAAATGCTTAACAAGTGAAGTCCTCCTCTTAACAAGTCTGTCAACAATGTTACCCGGCCAAACAAAACTTGCCAAATAAAAAATCTAACTTTCTTTGGAACCTTAGTCCTCCAAACCACTTCGAAAATAGACTCCGTGGGAGGAGAGGGATCCAACAACAAACTGAACAAAGATTTACACGTATATCCTCGACTGGGGTTAGGACTCCAAACTTGAGCACCCCTCCTTCCCTTCCTAAAGCTACACCCCTCAACCAAAGGAAGAAGAGAGACGACCTCCATCGCTTCCCTATTGGTCAAATTATGACGAAACCCAAAAGAACAAGACACGAGGTTCTCAGACCCAACTAAAAGATCCGACATCATGCAGTTTTTGGAGGAGAATAAATAATAAAGATGTGGAAATAAAGAGCAAAGGGAACTCTCCCCCACCCAATGATCCTCCAAAAATACATATCTTACCATCCCTCACAAAGCAACGAGTAAATTGAGAGAAGGCGGGAGCTCAAAAGAGACATCCTTCAAGGTTTGGGATATGTGCCTTTTAACCCCTTTCTCTGTCCATTCAAAAGGATGGGTACATTGCTTACACACGATAGTAGAATGGTTATCATTTGTAACTTGTAGAATGATTATCATACTTTTGTAGCTTTATCGCTCTTTTCCAATTGGAAAGGTCTTTTGTAACTACTCTTGGGGTTCTTCCCCCTTGTTTGGTAATTTCATATCATCAATGAAATTGTTTTCCAAAAGAAAAATTATCGTTCTATTGTGTTGGTCATATTTGGTTGCTGCATAGTTTTGTGTCACTTGTCTTACTTAAATTGCATGTTCTGGTTAGTTGAACCTGTGTTGGTAGTTGGTTAATAGCTATCTGTCTTGTGTCTGCTCTCATACACCAATCTCTGAGTACTGTTAGTTTGTTTGCTTACAGAATAGTAATTGAATTTTTACATGGATTGCACCCATGAAAGTTTTGCTGATTTGTGTTCGCTCTTATTTTCTTGTTCATTACCCTTTCCAGGACCAGCTCAGAACTTCTTCTCAATCCTGTAAGTTCATGTCATTAATGAGCATTCTGCCTTGACAATTTAGCTGCTTTATCATTTTGTGCTTTTTCTTTTTCTGGGGAGTTGGGGGGGCTCAGTGGAGGATGGAGTACATAGCTATTCATGCTGAGCAAAACTTGTGGAAACATCAAGCACTTATTTTCTTGGGGGATTGGAACGCATTTTTATCTACTGTGACATGTCAGCGTCAGCGCCTATGCATAATTTTCTAGTGATCCTTTTTTTCTTCCCTCTTTTTATTTTCTTCAATTGGAGAATCATGTTCATGCAAAAAGAGCATACTTAGGAGTTGGGAGTAGTTGGGGAATGACTTATATATTTATTTAAGGACACATGTGATCTTGCTATATTATATTGCTCTTGCAGATCTTAATATGTAGAAATGAGTCAGAGAAATGTTTGATTGAGACATCTATAAACTCTCTCCGTATCAGTCTCAAGGTAATTTTATTCTCTTTGTTCTAATTTGATGCATTAGAGGCATATGTACTACCATAAACTCTTTTCTCTCCATTCCTTTGATCCACTTACCTGATGAAACACCGCTGGATGTGTACAATTATTATCATAGATTGCCATCAACTTGTTCACAATAATTTTATTTGAATTTTTTCTTGTGCTCAGGTTAAGCAGACAGACGAACTAGAGAATATCCTAACTAAAAAGTTCCTTCGATTTCTGTCAATGAGGGCAGAAGCATTCCAGGTGTTGAGAAGAAAACCTGTACAGGTACCACGATGATTCTAATCTTGACTTTAGCTTTGTTCTTTAGTTCAAGATGACATATTACAGCGAGTGTGAACTATTCTTCTAAAAACAAAAGTTAAACTTTCAAGTATTGGAGATTATTTGTGACGAATCACTTGAAAATACTTGGAACTGTACTACTAGGATGATTGTGTCTTCTGAATCCTCAAGTTTCCACGAAGTCATATTTTATTTCTCTTGGAGGGCATGATATTGAAACTGGTCTACCCTCTATTGAGAGAGAACTGAAAGGCGAGTTCTAGGTTCATTTGTCTTATTCATCTTTGTTGAAGGAGATAAGAGACATCCTCCAATTTCATTTATTTATTCTCTTATTGCCAGTGTGAACAGTAAAATAACTGAATTTATAGGCTATAATATTGAGATGCTATTTAGCGACAACTATTTGTGCCTGCATAGCTAGTTGTCTTGGTTTTGATGACCTAAAAATAATCTGATTAATTGATTTATGTTGTGGTATTAAACCTTTATAACCATGCATGTCTTGTCTTTAAGAGTCAACGATTCTGGATTAATTATCTCCTATTTTTTCTCTCTTCCCTTCCATATAACTAAAAATAATTATTATAAGCGACAAGCCTCTAACATGAATCCATCCTGGTCAATTGTTTTTCTATAAAGAAACTATGTTTTCTTTTCCGATATGAACTACTTCCTCCATAATTGTTTATATTCTTTGCCAGTATTCTAGACCATATTCCAGATTTGCTATTTTGTTTGCAAAACATAAGTAGTGTCCTTCAGAATTCATCTCTTATTTCTTTTTGGCTTTCATTACAGGGATACGACATTAGCTTTCTCATAACGAACTATCATTGTGAGGACATGCAGAAGCAAAAACTCATTGATTTTATTGTACAGTTTATGGAGGCAAGATAACACCACCTCAATCAATTTGTAGCTATTTACTTGATTTCATTTTCTTCTGCTTAATTATCTCTTTGATTTTCTTTTCTCATCAACTGAATTTTCTATATGCTTTTTATCCTAATGAACATACACTATTTCAAAAAGTTTCTCGAACTTGTCTTGGAGTTCATAACTGAATATTTCTTTTATGTAAAAATCCTTCCGTCATTGGCTTTCACAACTTCAAACTGTTCTGCACAAATTTAAGAGCTAACATTTATAATTCCCTTTTGTGGAATTGTTTATGTAATGATCGAAGAGAAATTTATCGAATTGAGAGCTTGTTGAATAATCCTTTTATTTCCCCTCATTTGTGCAGGATATTGATAAAGAGATTAGTGAACTTAAAATGTCCGTGAACACTCGAGGAAGGCTTGTAGCAACAGAGTTTCTAAAGCAATTCATATGATGTCTCTTTCTCTATCTAGGTAAACTCCCCTTTCCCCAAATTTTTCTTCAAGATCATTCTATTGCTACTTGTTAATTATATATATATCCTTGTACCTCATTTAACAAGATTTATTCCTCTTATATTTTAATTTTATGCTACCTAATATTGGGTTTAGGATTTGATCCAAAAATACATAGTTGATGAATAAAGCTATACTTGGGTTTGGCGTTGTAAACCCAATGTCCAAAAAGATTATGTAAAAGAGGTTTTTGAAGGGATAAATGAATTGAAATAGAAGAGAACTAAGAACAGATAAAGCATAGGACAGCTTGTCCGGATAACTTCCAATAAAAGAAAAGAGCTTACGAAGCACACTCTCAATGAGATTGTCTTTGATGCCTTCTCAGGCCTTCAAAGATTGTCAAAACCTTTCACGAGGGAATGGGAGACCCACGAGAGTCTCACACAAAATGACAAATCCACCCTTTTTATCAATTTTATTAGAGATTTTAGGCTTTTCTGGTCGTTAAGAATTAAGATTGTGTCCAAATCCATTGGTTTTCTTTTTATCATTTTGTTGCTGTAAGTATTTACGCAAACCTCTGCACTTTAAAATCTCTTTTGCTTCCTTAAATCGCTTTTTTTGTAATCATAAAATTCTTTTTTCATTTCAGTTCTTTCTTATTCTCCCTAACCCTAATTTAATCATACGGCTATCTACATTACTACCCTAGTTAAATAGGTCCAGTTAGCCTAAAGTTACAATTCTTTTCACTAATAGCCTAATGAGTCACAATATTTCATTAAAAAAAGGGTCAAAATGTCATTATACATCTTTGCACATTTAATCTTACGGGTTTTCAAATAAATAAATATAAT

Coding sequence (CDS)

ATGAACTATTCAGCTGTACATGACCAGTTACGTTTGTGTACGAATTTTCCTTGTCAAGAAGTTGAAAGACACAACAAGCCGGAAGTTGAACTAAAGACCAGCTCAGAACTTCTTCTCAATCCTATCTTAATATGTAGAAATGAGTCAGAGAAATGTTTGATTGAGACATCTATAAACTCTCTCCGTATCAGTCTCAAGGTTAAGCAGACAGACGAACTAGAGAATATCCTAACTAAAAAGTTCCTTCGATTTCTGTCAATGAGGGCAGAAGCATTCCAGGTGTTGAGAAGAAAACCTGTACAGGGATACGACATTAGCTTTCTCATAACGAACTATCATTGTGAGGACATGCAGAAGCAAAAACTCATTGATTTTATTGTACAGTTTATGGAGGATATTGATAAAGAGATTAGTGAACTTAAAATGTCCGTGAACACTCGAGGAAGGCTTGTAGCAACAGAGTTTCTAAAGCAATTCATATGA

Protein sequence

MNYSAVHDQLRLCTNFPCQEVERHNKPEVELKTSSELLLNPILICRNESEKCLIETSINSLRISLKVKQTDELENILTKKFLRFLSMRAEAFQVLRRKPVQGYDISFLITNYHCEDMQKQKLIDFIVQFMEDIDKEISELKMSVNTRGRLVATEFLKQFI

Homology

[Close]

BLAST of Cucsat.G17724 vs. ExPASy Swiss-Prot
Match: F4JUL9 (Actin-related protein 2/3 complex subunit 4 OS=Arabidopsis thaliana OX=3702 GN=ARPC4 PE=1 SV=1)

HSP 1 Score: 269.6 bits (688), Expect = 2.1e-71
Identity = 135/146 (92.47%), Postives = 142/146 (97.26%), Query Frame = 0


Query: 7   NFPCQEVERHNKPEVELKTSSELLLNPILICRNESEKCLIETSINSLRISLKVKQTDELE 66
           NFPCQEVERHNKPEVELKTS ELLLNP+LICRNE+EKCLIETSINSLRISLKVKQ DELE
Sbjct: 24  NFPCQEVERHNKPEVELKTSPELLLNPVLICRNEAEKCLIETSINSLRISLKVKQADELE 83

Query: 67  NILTKKFLRFLSMRAEAFQVLRRKPVQGYDISFLITNYHCEDMQKQKLIDFIVQFMEDID 126
           NILTKKFLRFLSMRAEAFQVLRRKPVQGYDISFLITNYHCE+MQKQKLIDFI+QFMEDI+
Sbjct: 84  NILTKKFLRFLSMRAEAFQVLRRKPVQGYDISFLITNYHCEEMQKQKLIDFIIQFMEDIE 143

Query: 127 KEISELKMSVNTRGRLVATEFLKQFI 153
           KEI +LK SVNTRGRLVATEFLKQF+
Sbjct: 144 KEIRDLKESVNTRGRLVATEFLKQFM 169

[Close]

BLAST of Cucsat.G17724 vs. ExPASy Swiss-Prot
Match: O96625 (Actin-related protein 2/3 complex subunit 4 OS=Dictyostelium discoideum OX=44689 GN=arcD PE=1 SV=1)

HSP 1 Score: 206.1 bits (523), Expect = 2.9e-52
Identity = 99/153 (64.71%), Postives = 132/153 (86.27%), Query Frame = 0


Query: 1   MTSYVC--NFPCQEVERHNKPEVELKTSSELLLNPILICRNESEKCLIETSINSLRISLK 60
           +T+ +C  NF  Q VERHNKPEVE+KTS EL+LNP++I RN++E+ LIETSINS+RIS+ 
Sbjct: 16  LTASMCLQNFGSQIVERHNKPEVEVKTSKELVLNPVIIARNKNERVLIETSINSIRISVS 75

Query: 61  VKQTDELENILTKKFLRFLSMRAEAFQVLRRKPVQGYDISFLITNYHCEDMQKQKLIDFI 120
           +K++DE++ IL KKF+RFL  RAE F +LRRKPV+GYDISFL+TN+H E+M K KL+DFI
Sbjct: 76  IKKSDEVDVILAKKFVRFLQQRAENFIILRRKPVEGYDISFLVTNFHTENMFKHKLVDFI 135

Query: 121 VQFMEDIDKEISELKMSVNTRGRLVATEFLKQF 152
           +QFMEDID+EIS+LK+++N RGR+VA+E+LK F
Sbjct: 136 IQFMEDIDREISDLKLTLNARGRIVASEYLKNF 168

[Close]

BLAST of Cucsat.G17724 vs. ExPASy Swiss-Prot
Match: Q641G7 (Actin-related protein 2/3 complex subunit 4 OS=Xenopus laevis OX=8355 GN=arpc4 PE=1 SV=1)

HSP 1 Score: 201.1 bits (510), Expect = 9.2e-51
Identity = 98/145 (67.59%), Postives = 119/145 (82.07%), Query Frame = 0


Query: 7   NFPCQEVERHNKPEVELKTSSELLLNPILICRNESEKCLIETSINSLRISLKVKQTDELE 66
           NF  Q VERHNKPEVE+++S ELLL P++I RNE EK LIE SINS+R+S+ VKQ DE+E
Sbjct: 24  NFSSQVVERHNKPEVEVRSSKELLLQPVVISRNEKEKVLIEGSINSVRVSIAVKQADEIE 83

Query: 67  NILTKKFLRFLSMRAEAFQVLRRKPVQGYDISFLITNYHCEDMQKQKLIDFIVQFMEDID 126
            IL  KF+RF+ MRAE F +LRRKPV+GYDISFLITN+H E M K KL+DF++ FME+ID
Sbjct: 84  KILCHKFMRFMMMRAENFFILRRKPVEGYDISFLITNFHTEQMYKHKLVDFVIHFMEEID 143

Query: 127 KEISELKMSVNTRGRLVATEFLKQF 152
           KEISE+K+SVN R R+VA EFLK F
Sbjct: 144 KEISEMKLSVNARARIVAEEFLKNF 168

[Close]

BLAST of Cucsat.G17724 vs. ExPASy Swiss-Prot
Match: Q148J6 (Actin-related protein 2/3 complex subunit 4 OS=Bos taurus OX=9913 GN=ARPC4 PE=1 SV=3)

HSP 1 Score: 200.3 bits (508), Expect = 1.6e-50
Identity = 98/145 (67.59%), Postives = 118/145 (81.38%), Query Frame = 0


Query: 7   NFPCQEVERHNKPEVELKTSSELLLNPILICRNESEKCLIETSINSLRISLKVKQTDELE 66
           NF  Q VERHNKPEVE+++S ELLL P+ I RNE EK LIE SINS+R+S+ VKQ DE+E
Sbjct: 24  NFSSQVVERHNKPEVEVRSSKELLLQPVTISRNEKEKVLIEGSINSVRVSIAVKQADEIE 83

Query: 67  NILTKKFLRFLSMRAEAFQVLRRKPVQGYDISFLITNYHCEDMQKQKLIDFIVQFMEDID 126
            IL  KF+RF+ MRAE F +LRRKPV+GYDISFLITN+H E M K KL+DF++ FME+ID
Sbjct: 84  KILCHKFMRFMMMRAENFFILRRKPVEGYDISFLITNFHTEQMYKHKLVDFVIHFMEEID 143

Query: 127 KEISELKMSVNTRGRLVATEFLKQF 152
           KEISE+K+SVN R R+VA EFLK F
Sbjct: 144 KEISEMKLSVNARARIVAEEFLKNF 168

[Close]

BLAST of Cucsat.G17724 vs. ExPASy Swiss-Prot
Match: P59998 (Actin-related protein 2/3 complex subunit 4 OS=Homo sapiens OX=9606 GN=ARPC4 PE=1 SV=3)

HSP 1 Score: 200.3 bits (508), Expect = 1.6e-50
Identity = 98/145 (67.59%), Postives = 118/145 (81.38%), Query Frame = 0


Query: 7   NFPCQEVERHNKPEVELKTSSELLLNPILICRNESEKCLIETSINSLRISLKVKQTDELE 66
           NF  Q VERHNKPEVE+++S ELLL P+ I RNE EK LIE SINS+R+S+ VKQ DE+E
Sbjct: 24  NFSSQVVERHNKPEVEVRSSKELLLQPVTISRNEKEKVLIEGSINSVRVSIAVKQADEIE 83

Query: 67  NILTKKFLRFLSMRAEAFQVLRRKPVQGYDISFLITNYHCEDMQKQKLIDFIVQFMEDID 126
            IL  KF+RF+ MRAE F +LRRKPV+GYDISFLITN+H E M K KL+DF++ FME+ID
Sbjct: 84  KILCHKFMRFMMMRAENFFILRRKPVEGYDISFLITNFHTEQMYKHKLVDFVIHFMEEID 143

Query: 127 KEISELKMSVNTRGRLVATEFLKQF 152
           KEISE+K+SVN R R+VA EFLK F
Sbjct: 144 KEISEMKLSVNARARIVAEEFLKNF 168

[Close]

BLAST of Cucsat.G17724 vs. NCBI nr
Match: XP_008457158.1 (PREDICTED: actin-related protein 2/3 complex subunit 4 isoform X2 [Cucumis melo] >XP_031736665.1 actin-related protein 2/3 complex subunit 4 isoform X2 [Cucumis sativus])

HSP 1 Score: 301 bits (770), Expect = 7.44e-103
Identity = 152/152 (100.00%), Postives = 152/152 (100.00%), Query Frame = 0


Query: 1   MTSYVCNFPCQEVERHNKPEVELKTSSELLLNPILICRNESEKCLIETSINSLRISLKVK 60
           MTSYVCNFPCQEVERHNKPEVELKTSSELLLNPILICRNESEKCLIETSINSLRISLKVK
Sbjct: 1   MTSYVCNFPCQEVERHNKPEVELKTSSELLLNPILICRNESEKCLIETSINSLRISLKVK 60

Query: 61  QTDELENILTKKFLRFLSMRAEAFQVLRRKPVQGYDISFLITNYHCEDMQKQKLIDFIVQ 120
           QTDELENILTKKFLRFLSMRAEAFQVLRRKPVQGYDISFLITNYHCEDMQKQKLIDFIVQ
Sbjct: 61  QTDELENILTKKFLRFLSMRAEAFQVLRRKPVQGYDISFLITNYHCEDMQKQKLIDFIVQ 120

Query: 121 FMEDIDKEISELKMSVNTRGRLVATEFLKQFI 152
           FMEDIDKEISELKMSVNTRGRLVATEFLKQFI
Sbjct: 121 FMEDIDKEISELKMSVNTRGRLVATEFLKQFI 152

[Close]

BLAST of Cucsat.G17724 vs. NCBI nr
Match: XP_031738467.1 (actin-related protein 2/3 complex subunit 4 isoform X2 [Cucumis sativus] >XP_031738468.1 actin-related protein 2/3 complex subunit 4 isoform X2 [Cucumis sativus] >KGN57509.1 hypothetical protein Csa_011776 [Cucumis sativus])

HSP 1 Score: 298 bits (762), Expect = 1.23e-101
Identity = 150/152 (98.68%), Postives = 151/152 (99.34%), Query Frame = 0


Query: 1   MTSYVCNFPCQEVERHNKPEVELKTSSELLLNPILICRNESEKCLIETSINSLRISLKVK 60
           MTSYVCNFPCQEVERHNKPEVELKTSSELLLNPILICRNESEKCLIETSINSLRISLKVK
Sbjct: 1   MTSYVCNFPCQEVERHNKPEVELKTSSELLLNPILICRNESEKCLIETSINSLRISLKVK 60

Query: 61  QTDELENILTKKFLRFLSMRAEAFQVLRRKPVQGYDISFLITNYHCEDMQKQKLIDFIVQ 120
           Q DELENILTKKFLRFLSMRAEAFQVLRRKP+QGYDISFLITNYHCEDMQKQKLIDFIVQ
Sbjct: 61  QADELENILTKKFLRFLSMRAEAFQVLRRKPLQGYDISFLITNYHCEDMQKQKLIDFIVQ 120

Query: 121 FMEDIDKEISELKMSVNTRGRLVATEFLKQFI 152
           FMEDIDKEISELKMSVNTRGRLVATEFLKQFI
Sbjct: 121 FMEDIDKEISELKMSVNTRGRLVATEFLKQFI 152

[Close]

BLAST of Cucsat.G17724 vs. NCBI nr
Match: XP_016902070.1 (PREDICTED: actin-related protein 2/3 complex subunit 4 isoform X3 [Cucumis melo] >XP_038907197.1 actin-related protein 2/3 complex subunit 4 isoform X2 [Benincasa hispida])

HSP 1 Score: 288 bits (736), Expect = 1.06e-97
Identity = 146/146 (100.00%), Postives = 146/146 (100.00%), Query Frame = 0


Query: 7   NFPCQEVERHNKPEVELKTSSELLLNPILICRNESEKCLIETSINSLRISLKVKQTDELE 66
           NFPCQEVERHNKPEVELKTSSELLLNPILICRNESEKCLIETSINSLRISLKVKQTDELE
Sbjct: 5   NFPCQEVERHNKPEVELKTSSELLLNPILICRNESEKCLIETSINSLRISLKVKQTDELE 64

Query: 67  NILTKKFLRFLSMRAEAFQVLRRKPVQGYDISFLITNYHCEDMQKQKLIDFIVQFMEDID 126
           NILTKKFLRFLSMRAEAFQVLRRKPVQGYDISFLITNYHCEDMQKQKLIDFIVQFMEDID
Sbjct: 65  NILTKKFLRFLSMRAEAFQVLRRKPVQGYDISFLITNYHCEDMQKQKLIDFIVQFMEDID 124

Query: 127 KEISELKMSVNTRGRLVATEFLKQFI 152
           KEISELKMSVNTRGRLVATEFLKQFI
Sbjct: 125 KEISELKMSVNTRGRLVATEFLKQFI 150

[Close]

BLAST of Cucsat.G17724 vs. NCBI nr
Match: XP_008457157.1 (PREDICTED: actin-related protein 2/3 complex subunit 4 isoform X1 [Cucumis melo])

HSP 1 Score: 288 bits (736), Expect = 2.04e-97
Identity = 146/146 (100.00%), Postives = 146/146 (100.00%), Query Frame = 0


Query: 7   NFPCQEVERHNKPEVELKTSSELLLNPILICRNESEKCLIETSINSLRISLKVKQTDELE 66
           NFPCQEVERHNKPEVELKTSSELLLNPILICRNESEKCLIETSINSLRISLKVKQTDELE
Sbjct: 24  NFPCQEVERHNKPEVELKTSSELLLNPILICRNESEKCLIETSINSLRISLKVKQTDELE 83

Query: 67  NILTKKFLRFLSMRAEAFQVLRRKPVQGYDISFLITNYHCEDMQKQKLIDFIVQFMEDID 126
           NILTKKFLRFLSMRAEAFQVLRRKPVQGYDISFLITNYHCEDMQKQKLIDFIVQFMEDID
Sbjct: 84  NILTKKFLRFLSMRAEAFQVLRRKPVQGYDISFLITNYHCEDMQKQKLIDFIVQFMEDID 143

Query: 127 KEISELKMSVNTRGRLVATEFLKQFI 152
           KEISELKMSVNTRGRLVATEFLKQFI
Sbjct: 144 KEISELKMSVNTRGRLVATEFLKQFI 169

[Close]

BLAST of Cucsat.G17724 vs. NCBI nr
Match: XP_011649071.1 (actin-related protein 2/3 complex subunit 4 isoform X1 [Cucumis sativus] >XP_038907196.1 actin-related protein 2/3 complex subunit 4 isoform X1 [Benincasa hispida] >KGN61430.1 hypothetical protein Csa_006614 [Cucumis sativus])

HSP 1 Score: 288 bits (736), Expect = 2.04e-97
Identity = 146/146 (100.00%), Postives = 146/146 (100.00%), Query Frame = 0


Query: 7   NFPCQEVERHNKPEVELKTSSELLLNPILICRNESEKCLIETSINSLRISLKVKQTDELE 66
           NFPCQEVERHNKPEVELKTSSELLLNPILICRNESEKCLIETSINSLRISLKVKQTDELE
Sbjct: 24  NFPCQEVERHNKPEVELKTSSELLLNPILICRNESEKCLIETSINSLRISLKVKQTDELE 83

Query: 67  NILTKKFLRFLSMRAEAFQVLRRKPVQGYDISFLITNYHCEDMQKQKLIDFIVQFMEDID 126
           NILTKKFLRFLSMRAEAFQVLRRKPVQGYDISFLITNYHCEDMQKQKLIDFIVQFMEDID
Sbjct: 84  NILTKKFLRFLSMRAEAFQVLRRKPVQGYDISFLITNYHCEDMQKQKLIDFIVQFMEDID 143

Query: 127 KEISELKMSVNTRGRLVATEFLKQFI 152
           KEISELKMSVNTRGRLVATEFLKQFI
Sbjct: 144 KEISELKMSVNTRGRLVATEFLKQFI 169

[Close]

BLAST of Cucsat.G17724 vs. ExPASy TrEMBL
Match: A0A1S3C653 (Actin-related protein 2/3 complex subunit 4 OS=Cucumis melo OX=3656 GN=LOC103496896 PE=3 SV=1)

HSP 1 Score: 301 bits (770), Expect = 3.60e-103
Identity = 152/152 (100.00%), Postives = 152/152 (100.00%), Query Frame = 0


Query: 1   MTSYVCNFPCQEVERHNKPEVELKTSSELLLNPILICRNESEKCLIETSINSLRISLKVK 60
           MTSYVCNFPCQEVERHNKPEVELKTSSELLLNPILICRNESEKCLIETSINSLRISLKVK
Sbjct: 1   MTSYVCNFPCQEVERHNKPEVELKTSSELLLNPILICRNESEKCLIETSINSLRISLKVK 60

Query: 61  QTDELENILTKKFLRFLSMRAEAFQVLRRKPVQGYDISFLITNYHCEDMQKQKLIDFIVQ 120
           QTDELENILTKKFLRFLSMRAEAFQVLRRKPVQGYDISFLITNYHCEDMQKQKLIDFIVQ
Sbjct: 61  QTDELENILTKKFLRFLSMRAEAFQVLRRKPVQGYDISFLITNYHCEDMQKQKLIDFIVQ 120

Query: 121 FMEDIDKEISELKMSVNTRGRLVATEFLKQFI 152
           FMEDIDKEISELKMSVNTRGRLVATEFLKQFI
Sbjct: 121 FMEDIDKEISELKMSVNTRGRLVATEFLKQFI 152

[Close]

BLAST of Cucsat.G17724 vs. ExPASy TrEMBL
Match: A0A0A0L985 (Actin-related protein 2/3 complex subunit 4 OS=Cucumis sativus OX=3659 GN=Csa_3G200200 PE=3 SV=1)

HSP 1 Score: 298 bits (762), Expect = 5.98e-102
Identity = 150/152 (98.68%), Postives = 151/152 (99.34%), Query Frame = 0


Query: 1   MTSYVCNFPCQEVERHNKPEVELKTSSELLLNPILICRNESEKCLIETSINSLRISLKVK 60
           MTSYVCNFPCQEVERHNKPEVELKTSSELLLNPILICRNESEKCLIETSINSLRISLKVK
Sbjct: 1   MTSYVCNFPCQEVERHNKPEVELKTSSELLLNPILICRNESEKCLIETSINSLRISLKVK 60

Query: 61  QTDELENILTKKFLRFLSMRAEAFQVLRRKPVQGYDISFLITNYHCEDMQKQKLIDFIVQ 120
           Q DELENILTKKFLRFLSMRAEAFQVLRRKP+QGYDISFLITNYHCEDMQKQKLIDFIVQ
Sbjct: 61  QADELENILTKKFLRFLSMRAEAFQVLRRKPLQGYDISFLITNYHCEDMQKQKLIDFIVQ 120

Query: 121 FMEDIDKEISELKMSVNTRGRLVATEFLKQFI 152
           FMEDIDKEISELKMSVNTRGRLVATEFLKQFI
Sbjct: 121 FMEDIDKEISELKMSVNTRGRLVATEFLKQFI 152

[Close]

BLAST of Cucsat.G17724 vs. ExPASy TrEMBL
Match: A0A1S4E268 (actin-related protein 2/3 complex subunit 4 isoform X3 OS=Cucumis melo OX=3656 GN=LOC103496896 PE=3 SV=1)

HSP 1 Score: 288 bits (736), Expect = 5.15e-98
Identity = 146/146 (100.00%), Postives = 146/146 (100.00%), Query Frame = 0


Query: 7   NFPCQEVERHNKPEVELKTSSELLLNPILICRNESEKCLIETSINSLRISLKVKQTDELE 66
           NFPCQEVERHNKPEVELKTSSELLLNPILICRNESEKCLIETSINSLRISLKVKQTDELE
Sbjct: 5   NFPCQEVERHNKPEVELKTSSELLLNPILICRNESEKCLIETSINSLRISLKVKQTDELE 64

Query: 67  NILTKKFLRFLSMRAEAFQVLRRKPVQGYDISFLITNYHCEDMQKQKLIDFIVQFMEDID 126
           NILTKKFLRFLSMRAEAFQVLRRKPVQGYDISFLITNYHCEDMQKQKLIDFIVQFMEDID
Sbjct: 65  NILTKKFLRFLSMRAEAFQVLRRKPVQGYDISFLITNYHCEDMQKQKLIDFIVQFMEDID 124

Query: 127 KEISELKMSVNTRGRLVATEFLKQFI 152
           KEISELKMSVNTRGRLVATEFLKQFI
Sbjct: 125 KEISELKMSVNTRGRLVATEFLKQFI 150

[Close]

BLAST of Cucsat.G17724 vs. ExPASy TrEMBL
Match: A0A0A0LHM5 (Actin-related protein 2/3 complex subunit 4 OS=Cucumis sativus OX=3659 GN=Csa_2G120960 PE=3 SV=1)

HSP 1 Score: 288 bits (736), Expect = 9.89e-98
Identity = 146/146 (100.00%), Postives = 146/146 (100.00%), Query Frame = 0


Query: 7   NFPCQEVERHNKPEVELKTSSELLLNPILICRNESEKCLIETSINSLRISLKVKQTDELE 66
           NFPCQEVERHNKPEVELKTSSELLLNPILICRNESEKCLIETSINSLRISLKVKQTDELE
Sbjct: 24  NFPCQEVERHNKPEVELKTSSELLLNPILICRNESEKCLIETSINSLRISLKVKQTDELE 83

Query: 67  NILTKKFLRFLSMRAEAFQVLRRKPVQGYDISFLITNYHCEDMQKQKLIDFIVQFMEDID 126
           NILTKKFLRFLSMRAEAFQVLRRKPVQGYDISFLITNYHCEDMQKQKLIDFIVQFMEDID
Sbjct: 84  NILTKKFLRFLSMRAEAFQVLRRKPVQGYDISFLITNYHCEDMQKQKLIDFIVQFMEDID 143

Query: 127 KEISELKMSVNTRGRLVATEFLKQFI 152
           KEISELKMSVNTRGRLVATEFLKQFI
Sbjct: 144 KEISELKMSVNTRGRLVATEFLKQFI 169

[Close]

BLAST of Cucsat.G17724 vs. ExPASy TrEMBL
Match: A0A1S3C5J1 (Actin-related protein 2/3 complex subunit 4 OS=Cucumis melo OX=3656 GN=LOC103496896 PE=3 SV=1)

HSP 1 Score: 288 bits (736), Expect = 9.89e-98
Identity = 146/146 (100.00%), Postives = 146/146 (100.00%), Query Frame = 0


Query: 7   NFPCQEVERHNKPEVELKTSSELLLNPILICRNESEKCLIETSINSLRISLKVKQTDELE 66
           NFPCQEVERHNKPEVELKTSSELLLNPILICRNESEKCLIETSINSLRISLKVKQTDELE
Sbjct: 24  NFPCQEVERHNKPEVELKTSSELLLNPILICRNESEKCLIETSINSLRISLKVKQTDELE 83

Query: 67  NILTKKFLRFLSMRAEAFQVLRRKPVQGYDISFLITNYHCEDMQKQKLIDFIVQFMEDID 126
           NILTKKFLRFLSMRAEAFQVLRRKPVQGYDISFLITNYHCEDMQKQKLIDFIVQFMEDID
Sbjct: 84  NILTKKFLRFLSMRAEAFQVLRRKPVQGYDISFLITNYHCEDMQKQKLIDFIVQFMEDID 143

Query: 127 KEISELKMSVNTRGRLVATEFLKQFI 152
           KEISELKMSVNTRGRLVATEFLKQFI
Sbjct: 144 KEISELKMSVNTRGRLVATEFLKQFI 169

The following BLAST results are available for this feature:

BLAST of Cucsat.G17724 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
F4JUL9	2.1e-71	92.47	Actin-related protein 2/3 complex subunit 4 OS=Arabidopsis thaliana OX=3702 GN=A...	[more]
O96625	2.9e-52	64.71	Actin-related protein 2/3 complex subunit 4 OS=Dictyostelium discoideum OX=44689...	[more]
Q641G7	9.2e-51	67.59	Actin-related protein 2/3 complex subunit 4 OS=Xenopus laevis OX=8355 GN=arpc4 P...	[more]
Q148J6	1.6e-50	67.59	Actin-related protein 2/3 complex subunit 4 OS=Bos taurus OX=9913 GN=ARPC4 PE=1 ...	[more]
P59998	1.6e-50	67.59	Actin-related protein 2/3 complex subunit 4 OS=Homo sapiens OX=9606 GN=ARPC4 PE=...	[more]

BLAST of Cucsat.G17724 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008457158.1	7.44e-103	100.00	PREDICTED: actin-related protein 2/3 complex subunit 4 isoform X2 [Cucumis melo]...	[more]
XP_031738467.1	1.23e-101	98.68	actin-related protein 2/3 complex subunit 4 isoform X2 [Cucumis sativus] >XP_031...	[more]
XP_016902070.1	1.06e-97	100.00	PREDICTED: actin-related protein 2/3 complex subunit 4 isoform X3 [Cucumis melo]...	[more]
XP_008457157.1	2.04e-97	100.00	PREDICTED: actin-related protein 2/3 complex subunit 4 isoform X1 [Cucumis melo]	[more]
XP_011649071.1	2.04e-97	100.00	actin-related protein 2/3 complex subunit 4 isoform X1 [Cucumis sativus] >XP_038...	[more]

BLAST of Cucsat.G17724 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3C653	3.60e-103	100.00	Actin-related protein 2/3 complex subunit 4 OS=Cucumis melo OX=3656 GN=LOC103496...	[more]
A0A0A0L985	5.98e-102	98.68	Actin-related protein 2/3 complex subunit 4 OS=Cucumis sativus OX=3659 GN=Csa_3G...	[more]
A0A1S4E268	5.15e-98	100.00	actin-related protein 2/3 complex subunit 4 isoform X3 OS=Cucumis melo OX=3656 G...	[more]
A0A0A0LHM5	9.89e-98	100.00	Actin-related protein 2/3 complex subunit 4 OS=Cucumis sativus OX=3659 GN=Csa_2G...	[more]
A0A1S3C5J1	9.89e-98	100.00	Actin-related protein 2/3 complex subunit 4 OS=Cucumis melo OX=3656 GN=LOC103496...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (B10) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008384	Actin-related protein 2/3 complex subunit 4	PFAM	PF05856	ARPC4	coord: 12..128 e-value: 1.2E-54 score: 184.4
IPR008384	Actin-related protein 2/3 complex subunit 4	PANTHER	PTHR22629	ARP2/3 COMPLEX 20 KD SUBUNIT	coord: 12..129
IPR034666	Arp2/3 complex subunit 2/4	GENE3D	3.30.1460.20		coord: 3..129 e-value: 4.2E-57 score: 194.2
IPR034666	Arp2/3 complex subunit 2/4	SUPERFAMILY	69645	Arp2/3 complex subunits	coord: 12..129
None	No IPR available	PANTHER	PTHR22629:SF0	ACTIN-RELATED PROTEIN 2/3 COMPLEX SUBUNIT 4	coord: 12..129

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsat.G17724.T15	Cucsat.G17724.T15	mRNA
Cucsat.G17724.T14	Cucsat.G17724.T14	mRNA
Cucsat.G17724.T1	Cucsat.G17724.T1	mRNA
Cucsat.G17724.T2	Cucsat.G17724.T2	mRNA
Cucsat.G17724.T7	Cucsat.G17724.T7	mRNA
Cucsat.G17724.T12	Cucsat.G17724.T12	mRNA
Cucsat.G17724.T16	Cucsat.G17724.T16	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0034314	Arp2/3 complex-mediated actin nucleation
biological_process	GO:0030833	regulation of actin filament polymerization
biological_process	GO:0030041	actin filament polymerization
cellular_component	GO:0005885	Arp2/3 protein complex
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0015629	actin cytoskeleton
molecular_function	GO:0051015	actin filament binding