Cucsat.G17261.T5 (mRNA) Cucumber (B10) v3
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ACATATCAAATAGCTTATCTTTCTTTTCTTAAGATCCCAAATTTTTATTCCGATTATCTTCTTCTTCTCTAATTCGATTCAATTCTTCTCTTCTTTTAACCCTAATTCTACTTTCCTATTGTTGGATTTGATCTTGTTTCTACTCCAATGGCTACTGAGGAACCGGTGGTGCCGGTGGAGTCTGCGGCAGAGCCGACTAACGCCGAACAAGCGGAAGAAAATCCGGCGAACAAGTCTGGCAGGTCTAAGAAGTCGAAAGAACCTAAAGACAAGAAACCTGCTGCTCCTAGAAAACCAAGAAATCCTCCAACTCATCCTCCATATGAAGAGGTGTGTTGCTGATTCAAATTCGAATTTTCTTTTGAATTTAATGTTTCGTGTATTGGATCTGTTTTGTTGATTTGGTTTGATGTTTTGATTTCAGATGATTAAGGATGCGATTGTTACGTTGAAGGAAAGAACTGGTTCGAGTCAGTATGCGATCACTAAGTTTATTGAAGAGAAGCAAAAGCAACTTCCACCGAACTTTAAGAAGCTTTTGTTATTCCATTTGAAGAAACTTGTGACTTCCGGGAAGTTGGTGAAGGTTAAGAGTTCGTTCAAGCTTAAACCGGCGAAGTCGGCAGTTGTGAAACCTGCTTCTCCTGCGAAGAAGAAGCCTGTAGCTGCTAAGCCGAAGTCTAAACCCGTAGCTAAGCCCAAAGCTGTTGCAAAATCTCCTGCGAAGCCGAAGGCTGCTGCAAAGCCGAAGCCTAAGGCGACTCCCAAGCCCAAAGCTGCTCCTAAACCCAAAGCTGCTCCAGCCAAGTCGAAGAGCAGTGCTGTGGCGAAGCCCAAAGCTGCGGCAAAGACTAAAGCCGCTCCCAAGCCGAAAGCTAAGGAAAAGCCAGCGAAGGCTGCAAGAACTTCGACGAGAACCTCACCAGGAAGGAAGGCACCAGCTCCAAAACCGGTAGTGAAGAAGGCACCGGCGGCGAAGAAGGCTCCATCGAAAAGTGTTAAAGCTAAAAAAGTGAAATCGCTGGCGAAAAAGTCTCCGGCTAAAAGAGGGAGTAAAGGGAGGTAGATTCTGGCGGCGGTCCTGTCAATCTGTAATCCTTGTGGGTGTATAGACCCTTACATGCCGTGCTATAGAGGAGTTTACCTGAGACTTTTCGACTTTTCTTCTTTTATTTATTAATTTGTAGAACTTTTTTTTTTCTCTCCCCAAGTTGATGTATCACTCAGCTTAGTTGTTAATGGAAATTCAGTAATCAATTAGAAGTGTTGATTTCAGTTATCAACCTATGCTTTCTATGGGCAATTCGACTCCAATTATCAAGGAAACAGTTCATTTCTCTCAACGCTGGAAATGGACATGGATTGGATTTAGTAACTGAAGTTTGAAGCCTTGTTGTTAAGCCTGGTAAATCTCAAACCTTATAGTTCTCGCCCTTATTATCTGTTTGTGTGGTTCATATTTTGCCTATTATCTGTCTAGAAGATGAATTCTTAGAGATACTGTCAATTATCTTGTTAATATTTGATGGTTTCTTAGATGGGGTTTGATTAGGTGTTAAGGGTTTGATCATAACTATTAATTCCTTGGGGCTGGCTGTTTGATTTAGTGTAGCAGCATTCTCGCAGTGTATGTATGGAGTGTTATCTACAGCTGTTTGCATAGGAACACTCACAATGTATGGTGTTATCTACAGATGTTTGCATTGTGTTGTTCCTTGTAGTTTGTTCGTTTTATTAGGTTTTGGATAGATTTGCTGATGATTTTGATTCCAGAAGGATGGATTTATACAAATTACTGGATTAGGAAGACGTTTGTTACACAAATTTTTGAAGGATAATAGAAGCTACCCTTATGAAAACATTAAGGTTAGGAAGATTGCGAAGGTGATTGGGTGCTTAAGAACGGGTTGGCATTTGGCTAAGAAGTCAATATGATGGGGAGGGGTTGGAAGGGATTGGAGATAAAAAGAGAGCGATTTTCACAATGATATTGCAAGTTCTTGCATTGCGATGGTAGAGAATGATATTGGAAAACCTCATTGTGATGATGGTGTTTTTTGTTATCTGGCACCGTTCTTAATTGACCACATAACTCCTTGAATTCATCCTCGGGTACTTTAACCGTTGTTTTCTAACCCCAAATTGGCACCCACAAGGTGCAACATGGCACTTGGTGAGTATCGTGTTTATTTGGAACTTAGGAATGCATCTCCTTAGAATGTGATCAATCCCCAATTTGTAAAGGTAGGTCGCATTATTCTATTTGTAAAAGTGACATTCATGAAACTTCTTTCTTTGTTGATAGCTAAAGTCCTGTGGCCATGTTTTGCATACCCGATAATTGACTATGTTTTGTGTACCACGGTTCCCTCTCTTCAACTTTCATCAATTACTTATCAAGAAACTTGTCCCCGATTTCAATCTAACCATAAAGAGGGGTGTTTTCCAAATGCGACAAATGATCTGCAACCTGATTCTGGGTACTTTTGCAGTCTGGTATGTCCAAATCAAATGCTTGGAGC ATGATTAAGGATGCGATTGTTACGTTGAAGGAAAGAACTGGTTCGAGTCAGTATGCGATCACTAAGTTTATTGAAGAGAAGCAAAAGCAACTTCCACCGAACTTTAAGAAGCTTTTGTTATTCCATTTGAAGAAACTTGTGACTTCCGGGAAGTTGGTGAAGGTTAAGAGTTCGTTCAAGCTTAAACCGGCGAAGTCGGCAGTTGTGAAACCTGCTTCTCCTGCGAAGAAGAAGCCTGTAGCTGCTAAGCCGAAGTCTAAACCCGTAGCTAAGCCCAAAGCTGTTGCAAAATCTCCTGCGAAGCCGAAGGCTGCTGCAAAGCCGAAGCCTAAGGCGACTCCCAAGCCCAAAGCTGCTCCTAAACCCAAAGCTGCTCCAGCCAAGTCGAAGAGCAGTGCTGTGGCGAAGCCCAAAGCTGCGGCAAAGACTAAAGCCGCTCCCAAGCCGAAAGCTAAGGAAAAGCCAGCGAAGGCTGCAAGAACTTCGACGAGAACCTCACCAGGAAGGAAGGCACCAGCTCCAAAACCGGTAGTGAAGAAGGCACCGGCGGCGAAGAAGGCTCCATCGAAAAGTGTTAAAGCTAAAAAAGTGAAATCGCTGGCGAAAAAGTCTCCGGCTAAAAGAGGGAGTAAAGGGAGGTAG MIKDAIVTLKERTGSSQYAITKFIEEKQKQLPPNFKKLLLFHLKKLVTSGKLVKVKSSFKLKPAKSAVVKPASPAKKKPVAAKPKSKPVAKPKAVAKSPAKPKAAAKPKPKATPKPKAAPKPKAAPAKSKSSAVAKPKAAAKTKAAPKPKAKEKPAKAARTSTRTSPGRKAPAPKPVVKKAPAAKKAPSKSVKAKKVKSLAKKSPAKRGSKGR Homology
BLAST of Cucsat.G17261.T5 vs. ExPASy Swiss-Prot
Match: P37218 (Histone H1 OS=Solanum lycopersicum OX=4081 PE=3 SV=1) HSP 1 Score: 152.9 bits (385), Expect = 4.0e-36 Identity = 141/235 (60.00%), Postives = 151/235 (64.26%), Query Frame = 0
BLAST of Cucsat.G17261.T5 vs. ExPASy Swiss-Prot
Match: P08283 (Histone H1 OS=Pisum sativum OX=3888 PE=2 SV=1) HSP 1 Score: 150.2 bits (378), Expect = 2.6e-35 Identity = 129/213 (60.56%), Postives = 142/213 (66.67%), Query Frame = 0
BLAST of Cucsat.G17261.T5 vs. ExPASy Swiss-Prot
Match: P26569 (Histone H1.2 OS=Arabidopsis thaliana OX=3702 GN=At2g30620 PE=1 SV=1) HSP 1 Score: 149.4 bits (376), Expect = 4.5e-35 Identity = 132/219 (60.27%), Postives = 149/219 (68.04%), Query Frame = 0
BLAST of Cucsat.G17261.T5 vs. ExPASy Swiss-Prot
Match: P26568 (Histone H1.1 OS=Arabidopsis thaliana OX=3702 GN=At1g06760 PE=1 SV=1) HSP 1 Score: 118.6 bits (296), Expect = 8.5e-26 Identity = 114/217 (52.53%), Postives = 130/217 (59.91%), Query Frame = 0
BLAST of Cucsat.G17261.T5 vs. ExPASy Swiss-Prot
Match: P23444 (Histone H1 OS=Zea mays OX=4577 PE=2 SV=2) HSP 1 Score: 114.8 bits (286), Expect = 1.2e-24 Identity = 110/200 (55.00%), Postives = 130/200 (65.00%), Query Frame = 0
BLAST of Cucsat.G17261.T5 vs. NCBI nr
Match: XP_004140078.1 (histone H1 [Cucumis sativus] >KGN47855.1 hypothetical protein Csa_003138 [Cucumis sativus]) HSP 1 Score: 343 bits (880), Expect = 1.05e-116 Identity = 213/213 (100.00%), Postives = 213/213 (100.00%), Query Frame = 0
BLAST of Cucsat.G17261.T5 vs. NCBI nr
Match: XP_008449373.1 (PREDICTED: histone H1 [Cucumis melo]) HSP 1 Score: 326 bits (836), Expect = 5.21e-110 Identity = 205/213 (96.24%), Postives = 207/213 (97.18%), Query Frame = 0
BLAST of Cucsat.G17261.T5 vs. NCBI nr
Match: KAA0057394.1 (histone H1 [Cucumis melo var. makuwa] >TYK30091.1 histone H1 [Cucumis melo var. makuwa]) HSP 1 Score: 325 bits (832), Expect = 3.75e-108 Identity = 204/212 (96.23%), Postives = 206/212 (97.17%), Query Frame = 0
BLAST of Cucsat.G17261.T5 vs. NCBI nr
Match: XP_038888055.1 (histone H1-like [Benincasa hispida]) HSP 1 Score: 300 bits (767), Expect = 1.51e-99 Identity = 190/211 (90.05%), Postives = 197/211 (93.36%), Query Frame = 0
BLAST of Cucsat.G17261.T5 vs. NCBI nr
Match: XP_022145924.1 (histone H1 [Momordica charantia]) HSP 1 Score: 294 bits (753), Expect = 2.02e-97 Identity = 188/211 (89.10%), Postives = 191/211 (90.52%), Query Frame = 0
BLAST of Cucsat.G17261.T5 vs. ExPASy TrEMBL
Match: A0A0A0KDR2 (H15 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G407650 PE=3 SV=1) HSP 1 Score: 343 bits (880), Expect = 5.10e-117 Identity = 213/213 (100.00%), Postives = 213/213 (100.00%), Query Frame = 0
BLAST of Cucsat.G17261.T5 vs. ExPASy TrEMBL
Match: A0A1S3BL93 (histone H1 OS=Cucumis melo OX=3656 GN=LOC103491272 PE=3 SV=1) HSP 1 Score: 326 bits (836), Expect = 2.52e-110 Identity = 205/213 (96.24%), Postives = 207/213 (97.18%), Query Frame = 0
BLAST of Cucsat.G17261.T5 vs. ExPASy TrEMBL
Match: A0A5A7UQL0 (Histone H1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold216G00660 PE=3 SV=1) HSP 1 Score: 325 bits (832), Expect = 1.81e-108 Identity = 204/212 (96.23%), Postives = 206/212 (97.17%), Query Frame = 0
BLAST of Cucsat.G17261.T5 vs. ExPASy TrEMBL
Match: A0A6J1CWP2 (histone H1 OS=Momordica charantia OX=3673 GN=LOC111015272 PE=3 SV=1) HSP 1 Score: 294 bits (753), Expect = 9.80e-98 Identity = 188/211 (89.10%), Postives = 191/211 (90.52%), Query Frame = 0
BLAST of Cucsat.G17261.T5 vs. ExPASy TrEMBL
Match: A0A1S3BGU4 (histone H1-like OS=Cucumis melo OX=3656 GN=LOC103489696 PE=3 SV=1) HSP 1 Score: 279 bits (714), Expect = 7.22e-92 Identity = 184/211 (87.20%), Postives = 191/211 (90.52%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucumber (B10) v3
Date Performed: 2021-10-25
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
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