Cucsat.G17261.T5 (mRNA) Cucumber (B10) v3

Overview


Name	Cucsat.G17261.T5
Type	mRNA
Organism	Cucumis sativus L. var. sativus cv B10 (Cucumber (B10) v3)
Description	histone H1
Location	ctg27: 1576836 .. 1579357 (+)
RNA-Seq Expression	Cucsat.G17261.T5
Synteny	Cucsat.G17261.T5

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ACATATCAAATAGCTTATCTTTCTTTTCTTAAGATCCCAAATTTTTATTCCGATTATCTTCTTCTTCTCTAATTCGATTCAATTCTTCTCTTCTTTTAACCCTAATTCTACTTTCCTATTGTTGGATTTGATCTTGTTTCTACTCCAATGGCTACTGAGGAACCGGTGGTGCCGGTGGAGTCTGCGGCAGAGCCGACTAACGCCGAACAAGCGGAAGAAAATCCGGCGAACAAGTCTGGCAGGTCTAAGAAGTCGAAAGAACCTAAAGACAAGAAACCTGCTGCTCCTAGAAAACCAAGAAATCCTCCAACTCATCCTCCATATGAAGAGGTGTGTTGCTGATTCAAATTCGAATTTTCTTTTGAATTTAATGTTTCGTGTATTGGATCTGTTTTGTTGATTTGGTTTGATGTTTTGATTTCAGATGATTAAGGATGCGATTGTTACGTTGAAGGAAAGAACTGGTTCGAGTCAGTATGCGATCACTAAGTTTATTGAAGAGAAGCAAAAGCAACTTCCACCGAACTTTAAGAAGCTTTTGTTATTCCATTTGAAGAAACTTGTGACTTCCGGGAAGTTGGTGAAGGTTAAGAGTTCGTTCAAGCTTAAACCGGCGAAGTCGGCAGTTGTGAAACCTGCTTCTCCTGCGAAGAAGAAGCCTGTAGCTGCTAAGCCGAAGTCTAAACCCGTAGCTAAGCCCAAAGCTGTTGCAAAATCTCCTGCGAAGCCGAAGGCTGCTGCAAAGCCGAAGCCTAAGGCGACTCCCAAGCCCAAAGCTGCTCCTAAACCCAAAGCTGCTCCAGCCAAGTCGAAGAGCAGTGCTGTGGCGAAGCCCAAAGCTGCGGCAAAGACTAAAGCCGCTCCCAAGCCGAAAGCTAAGGAAAAGCCAGCGAAGGCTGCAAGAACTTCGACGAGAACCTCACCAGGAAGGAAGGCACCAGCTCCAAAACCGGTAGTGAAGAAGGCACCGGCGGCGAAGAAGGCTCCATCGAAAAGTGTTAAAGCTAAAAAAGTGAAATCGCTGGCGAAAAAGTCTCCGGCTAAAAGAGGGAGTAAAGGGAGGTAGATTCTGGCGGCGGTCCTGTCAATCTGTAATCCTTGTGGGTGTATAGACCCTTACATGCCGTGCTATAGAGGAGTTTACCTGAGACTTTTCGACTTTTCTTCTTTTATTTATTAATTTGTAGAACTTTTTTTTTTCTCTCCCCAAGTTGATGTATCACTCAGCTTAGTTGTTAATGGAAATTCAGTAATCAATTAGAAGTGTTGATTTCAGTTATCAACCTATGCTTTCTATGGGCAATTCGACTCCAATTATCAAGGAAACAGTTCATTTCTCTCAACGCTGGAAATGGACATGGATTGGATTTAGTAACTGAAGTTTGAAGCCTTGTTGTTAAGCCTGGTAAATCTCAAACCTTATAGTTCTCGCCCTTATTATCTGTTTGTGTGGTTCATATTTTGCCTATTATCTGTCTAGAAGATGAATTCTTAGAGATACTGTCAATTATCTTGTTAATATTTGATGGTTTCTTAGATGGGGTTTGATTAGGTGTTAAGGGTTTGATCATAACTATTAATTCCTTGGGGCTGGCTGTTTGATTTAGTGTAGCAGCATTCTCGCAGTGTATGTATGGAGTGTTATCTACAGCTGTTTGCATAGGAACACTCACAATGTATGGTGTTATCTACAGATGTTTGCATTGTGTTGTTCCTTGTAGTTTGTTCGTTTTATTAGGTTTTGGATAGATTTGCTGATGATTTTGATTCCAGAAGGATGGATTTATACAAATTACTGGATTAGGAAGACGTTTGTTACACAAATTTTTGAAGGATAATAGAAGCTACCCTTATGAAAACATTAAGGTTAGGAAGATTGCGAAGGTGATTGGGTGCTTAAGAACGGGTTGGCATTTGGCTAAGAAGTCAATATGATGGGGAGGGGTTGGAAGGGATTGGAGATAAAAAGAGAGCGATTTTCACAATGATATTGCAAGTTCTTGCATTGCGATGGTAGAGAATGATATTGGAAAACCTCATTGTGATGATGGTGTTTTTTGTTATCTGGCACCGTTCTTAATTGACCACATAACTCCTTGAATTCATCCTCGGGTACTTTAACCGTTGTTTTCTAACCCCAAATTGGCACCCACAAGGTGCAACATGGCACTTGGTGAGTATCGTGTTTATTTGGAACTTAGGAATGCATCTCCTTAGAATGTGATCAATCCCCAATTTGTAAAGGTAGGTCGCATTATTCTATTTGTAAAAGTGACATTCATGAAACTTCTTTCTTTGTTGATAGCTAAAGTCCTGTGGCCATGTTTTGCATACCCGATAATTGACTATGTTTTGTGTACCACGGTTCCCTCTCTTCAACTTTCATCAATTACTTATCAAGAAACTTGTCCCCGATTTCAATCTAACCATAAAGAGGGGTGTTTTCCAAATGCGACAAATGATCTGCAACCTGATTCTGGGTACTTTTGCAGTCTGGTATGTCCAAATCAAATGCTTGGAGC

Coding sequence (CDS)

ATGATTAAGGATGCGATTGTTACGTTGAAGGAAAGAACTGGTTCGAGTCAGTATGCGATCACTAAGTTTATTGAAGAGAAGCAAAAGCAACTTCCACCGAACTTTAAGAAGCTTTTGTTATTCCATTTGAAGAAACTTGTGACTTCCGGGAAGTTGGTGAAGGTTAAGAGTTCGTTCAAGCTTAAACCGGCGAAGTCGGCAGTTGTGAAACCTGCTTCTCCTGCGAAGAAGAAGCCTGTAGCTGCTAAGCCGAAGTCTAAACCCGTAGCTAAGCCCAAAGCTGTTGCAAAATCTCCTGCGAAGCCGAAGGCTGCTGCAAAGCCGAAGCCTAAGGCGACTCCCAAGCCCAAAGCTGCTCCTAAACCCAAAGCTGCTCCAGCCAAGTCGAAGAGCAGTGCTGTGGCGAAGCCCAAAGCTGCGGCAAAGACTAAAGCCGCTCCCAAGCCGAAAGCTAAGGAAAAGCCAGCGAAGGCTGCAAGAACTTCGACGAGAACCTCACCAGGAAGGAAGGCACCAGCTCCAAAACCGGTAGTGAAGAAGGCACCGGCGGCGAAGAAGGCTCCATCGAAAAGTGTTAAAGCTAAAAAAGTGAAATCGCTGGCGAAAAAGTCTCCGGCTAAAAGAGGGAGTAAAGGGAGGTAG

Protein sequence

MIKDAIVTLKERTGSSQYAITKFIEEKQKQLPPNFKKLLLFHLKKLVTSGKLVKVKSSFKLKPAKSAVVKPASPAKKKPVAAKPKSKPVAKPKAVAKSPAKPKAAAKPKPKATPKPKAAPKPKAAPAKSKSSAVAKPKAAAKTKAAPKPKAKEKPAKAARTSTRTSPGRKAPAPKPVVKKAPAAKKAPSKSVKAKKVKSLAKKSPAKRGSKGR

Homology

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BLAST of Cucsat.G17261.T5 vs. ExPASy Swiss-Prot
Match: P37218 (Histone H1 OS=Solanum lycopersicum OX=4081 PE=3 SV=1)

HSP 1 Score: 152.9 bits (385), Expect = 4.0e-36
Identity = 141/235 (60.00%), Postives = 151/235 (64.26%), Query Frame = 0


Query: 1   MIKDAIVTLKERTGSSQYAITKFIEEKQKQLPPNFKKLLLFHLKKLVTSGKLVKVKSSFK 60
           MIKDAIVTLKERTGSSQ+AITKFIEEKQK LP NFKKLLL  LKK V S KLVKVK+S+K
Sbjct: 62  MIKDAIVTLKERTGSSQHAITKFIEEKQKSLPSNFKKLLLTQLKKFVASEKLVKVKNSYK 121

Query: 61  LKPAKSAVVKPASPAKKKPVAAKPKSKPVAKPKAVAKSPAKPKAAAKPKPKATPKPKAAP 120
           L P+ S     A PAKKKP AA  KSKP AKPKA  K  AKP A AKP  KA P  KA P
Sbjct: 122 L-PSGSKPAAAAVPAKKKPAAA--KSKPAAKPKAAVKPKAKPAAKAKPAAKAKPAAKAKP 181

Query: 121 KPKAAP---------------AKSKSSAVAKPKAA-------AKTKAAPKP--KAKEKPA 180
             KA P               AK K++A AKPKAA       AKTKAA KP  KAK   A
Sbjct: 182 AAKAKPAAKAKPAAKAKPVAKAKPKAAAAAKPKAAVKPKAAPAKTKAAVKPNLKAKTTTA 241

Query: 181 KAARTSTRTSPGRKAPAPKPVVKKAPAAKKAPSKSVKAKKVKSLAKKSPAKRGSK 212
           K A+T+TRT+P RKA AP     KA  AKK P K   AK VKS AKK+  KRG K
Sbjct: 242 KVAKTATRTTPSRKA-AP-----KATPAKKEPVKKAPAKNVKSPAKKATPKRGRK 287

[Close]

BLAST of Cucsat.G17261.T5 vs. ExPASy Swiss-Prot
Match: P08283 (Histone H1 OS=Pisum sativum OX=3888 PE=2 SV=1)

HSP 1 Score: 150.2 bits (378), Expect = 2.6e-35
Identity = 129/213 (60.56%), Postives = 142/213 (66.67%), Query Frame = 0


Query: 1   MIKDAIVTLKERTGSSQYAITKFIEEKQKQLPPNFKKLLLFHLKKLVTSGKLVKVKSSFK 60
           MIKDAIV+LKE+ GSSQYAI KFIEEKQKQLP NFKKLLL +LKK V SGKL+KVK SFK
Sbjct: 68  MIKDAIVSLKEKNGSSQYAIAKFIEEKQKQLPANFKKLLLQNLKKNVASGKLIKVKGSFK 127

Query: 61  LKPAKSAVVKPASPAKKKPVAAKPKSKPVAKPKAV-AKSPAKPKAAAKPKPKATPKPKA- 120
           L           S A KKP  AKPK+K  AK K+V AK  AKPKA A  KPK   K KA 
Sbjct: 128 L-----------SAAAKKPAVAKPKAKTAAKAKSVKAKPAAKPKAKAVVKPKVASKAKAV 187

Query: 121 APKPKAAPAKSKSSAVAKPKAAAKTKAAPKPKAKEKPAKAARTSTRTSPGRKAPAPKPVV 180
           A KPK A AK K+ A      AAK KA  KPK+K KPAK A+TS +T+PG+K  A K V 
Sbjct: 188 AAKPKKAAAKPKTVAAKTKPTAAKPKAVVKPKSKVKPAKVAKTSVKTTPGKKVAAVKKV- 247

Query: 181 KKAPAAKKAPSKSVKAKKVKSLAKKSPAKRGSK 212
               AAKK P KSVKAK VKS  KK   KRG +
Sbjct: 248 ----AAKKVPVKSVKAKSVKSPVKKVSVKRGGR 264

[Close]

BLAST of Cucsat.G17261.T5 vs. ExPASy Swiss-Prot
Match: P26569 (Histone H1.2 OS=Arabidopsis thaliana OX=3702 GN=At2g30620 PE=1 SV=1)

HSP 1 Score: 149.4 bits (376), Expect = 4.5e-35
Identity = 132/219 (60.27%), Postives = 149/219 (68.04%), Query Frame = 0


Query: 1   MIKDAIVTLKERTGSSQYAITKFIEEKQKQLPPNFKKLLLFHLKKLVTSGKLVKVKSSFK 60
           MIKDAIVTLKERTGSSQYAI KFIEEK K LPP F+KLLL +LK+LV S KLVKVK+SFK
Sbjct: 68  MIKDAIVTLKERTGSSQYAIQKFIEEKHKSLPPTFRKLLLVNLKRLVASEKLVKVKASFK 127

Query: 61  LKPAKSAVV-KPASPAKKK-PVAAKPKSKPV-----AKPKAVAKSPAKPKAAAKPKPKAT 120
           +  A+SA   KPA+P KKK  V AKPK K       AK KA AK   KP A    K K T
Sbjct: 128 IPSARSAATPKPAAPVKKKATVVAKPKGKVAAAVAPAKAKAAAKGTKKPAAKVVAKAKVT 187

Query: 121 PKPKAAPKPKAAPAKSKSSAVAKPKAAAKTKA-APKPKAKEKPAKAARTSTRTSPGRKAP 180
            KPKA    K   AK KS +VA   A +KTKA A KPKAKE+PAKA+RTSTRTSPG+K  
Sbjct: 188 AKPKA----KVTAAKPKSKSVA---AVSKTKAVAAKPKAKERPAKASRTSTRTSPGKKVA 247

Query: 181 APKPVVKKAPAAKKAPSKSVKAKKVKSLAKKSPAKRGSK 212
           AP    KK    KKAP+KSV   KVKS AK++  ++  K
Sbjct: 248 AP---AKKVAVTKKAPAKSV---KVKSPAKRASTRKAKK 273

[Close]

BLAST of Cucsat.G17261.T5 vs. ExPASy Swiss-Prot
Match: P26568 (Histone H1.1 OS=Arabidopsis thaliana OX=3702 GN=At1g06760 PE=1 SV=1)

HSP 1 Score: 118.6 bits (296), Expect = 8.5e-26
Identity = 114/217 (52.53%), Postives = 130/217 (59.91%), Query Frame = 0


Query: 1   MIKDAIVTLKERTGSSQYAITKFIEEKQKQLPPNFKKLLLFHLKKLVTSGKLVKVKSSFK 60
           MIKDAIVTLKERTGSSQYAI KFIEEK+K+LPP F+KLLL +LK+LV SGKLVKVK+SFK
Sbjct: 68  MIKDAIVTLKERTGSSQYAIQKFIEEKRKELPPTFRKLLLLNLKRLVASGKLVKVKASFK 127

Query: 61  LKPAKSAVVKPASPAKKK-PVAAKPKSKPV--AKPKAVAKSPAKPKAAAKPK----PKAT 120
           L  A +    P + A+K  P   KP +  V  AK K  A S AK   A KPK     K T
Sbjct: 128 LPSASAKASSPKAAAEKSAPAKKKPATVAVTKAKRKVAAASKAKKTIAVKPKTAAAKKVT 187

Query: 121 PKPKAAPKPKAAPAKSKSSAVAKPKAAAKTKAAPKPKAKEKPAKAARTSTRTSPGRKAPA 180
            K KA P P+A  A +K  AV             KPKAK +PAKAA+T+  TSP +KA A
Sbjct: 188 AKAKAKPVPRATAAATKRKAV-----------DAKPKAKARPAKAAKTAKVTSPAKKAVA 247

Query: 181 PKPVVKKAPAAKKAPSKSVKAKKVKSLAKKSPAKRGS 211
               V      KK P K V    VK    KSPAKR S
Sbjct: 248 ATKKVATVATKKKTPVKKV----VKPKTVKSPAKRAS 269

[Close]

BLAST of Cucsat.G17261.T5 vs. ExPASy Swiss-Prot
Match: P23444 (Histone H1 OS=Zea mays OX=4577 PE=2 SV=2)

HSP 1 Score: 114.8 bits (286), Expect = 1.2e-24
Identity = 110/200 (55.00%), Postives = 130/200 (65.00%), Query Frame = 0


Query: 1   MIKDAIVTLKERTGSSQYAITKFIEEKQK-QLPPNFKKLLLFHLKKLVTSGKLVKVKSSF 60
           M+ +AI +LKERTGSS YAI KF+E+K K +LPPNF+KLL   LKKLV  GKL KVK+S+
Sbjct: 56  MVSEAITSLKERTGSSSYAIAKFVEDKHKAKLPPNFRKLLNVQLKKLVAGGKLTKVKNSY 115

Query: 61  KLKPAKSAVVKPASPAKKKPVAAKPKSKPVAKPKAVAKSPAKPKAAAKPKPKATPKPKAA 120
           KL  A     KP + A KKP     K K  AKPK  AK+PAK K A KPKP A PK    
Sbjct: 116 KLSSATKPNPKPKA-APKKPKTGAKKPKAAAKPK--AKTPAKAKPATKPKPAAKPKAVVK 175

Query: 121 PKPKAAPAKSKSSAVAKPKAAAKTKAAPKPKAKEK-PAKAARTSTRTSPGRKAPAPK--P 180
           PK  A P K+K +A AKPK A    A PKP AK+   AKAA+TS + +PG+KAPA K  P
Sbjct: 176 PKTPAKP-KAKPAAKAKPKTAG---AKPKPLAKKAGRAKAAKTSAKDTPGKKAPAKKAAP 235

Query: 181 VVKKAPAAKKAPSKSVKAKK 197
             K A   +KAPS+  KAKK
Sbjct: 236 SKKAATPVRKAPSR--KAKK 246

[Close]

BLAST of Cucsat.G17261.T5 vs. NCBI nr
Match: XP_004140078.1 (histone H1 [Cucumis sativus] >KGN47855.1 hypothetical protein Csa_003138 [Cucumis sativus])

HSP 1 Score: 343 bits (880), Expect = 1.05e-116
Identity = 213/213 (100.00%), Postives = 213/213 (100.00%), Query Frame = 0


Query: 1   MIKDAIVTLKERTGSSQYAITKFIEEKQKQLPPNFKKLLLFHLKKLVTSGKLVKVKSSFK 60
           MIKDAIVTLKERTGSSQYAITKFIEEKQKQLPPNFKKLLLFHLKKLVTSGKLVKVKSSFK
Sbjct: 62  MIKDAIVTLKERTGSSQYAITKFIEEKQKQLPPNFKKLLLFHLKKLVTSGKLVKVKSSFK 121

Query: 61  LKPAKSAVVKPASPAKKKPVAAKPKSKPVAKPKAVAKSPAKPKAAAKPKPKATPKPKAAP 120
           LKPAKSAVVKPASPAKKKPVAAKPKSKPVAKPKAVAKSPAKPKAAAKPKPKATPKPKAAP
Sbjct: 122 LKPAKSAVVKPASPAKKKPVAAKPKSKPVAKPKAVAKSPAKPKAAAKPKPKATPKPKAAP 181

Query: 121 KPKAAPAKSKSSAVAKPKAAAKTKAAPKPKAKEKPAKAARTSTRTSPGRKAPAPKPVVKK 180
           KPKAAPAKSKSSAVAKPKAAAKTKAAPKPKAKEKPAKAARTSTRTSPGRKAPAPKPVVKK
Sbjct: 182 KPKAAPAKSKSSAVAKPKAAAKTKAAPKPKAKEKPAKAARTSTRTSPGRKAPAPKPVVKK 241

Query: 181 APAAKKAPSKSVKAKKVKSLAKKSPAKRGSKGR 213
           APAAKKAPSKSVKAKKVKSLAKKSPAKRGSKGR
Sbjct: 242 APAAKKAPSKSVKAKKVKSLAKKSPAKRGSKGR 274

[Close]

BLAST of Cucsat.G17261.T5 vs. NCBI nr
Match: XP_008449373.1 (PREDICTED: histone H1 [Cucumis melo])

HSP 1 Score: 326 bits (836), Expect = 5.21e-110
Identity = 205/213 (96.24%), Postives = 207/213 (97.18%), Query Frame = 0


Query: 1   MIKDAIVTLKERTGSSQYAITKFIEEKQKQLPPNFKKLLLFHLKKLVTSGKLVKVKSSFK 60
           MIKDAIVTLKERTGSSQYAITKFIEEKQKQLP NFKKLLLFHLKKLV SGKLVKVKSSFK
Sbjct: 62  MIKDAIVTLKERTGSSQYAITKFIEEKQKQLPSNFKKLLLFHLKKLVASGKLVKVKSSFK 121

Query: 61  LKPAKSAVVKPASPAKKKPVAAKPKSKPVAKPKAVAKSPAKPKAAAKPKPKATPKPKAAP 120
           LKPAKSAVVKPASPAKKKPVAAKPKSK VAKPKAVAKSPAKPKAAAKPKPK T KPKAAP
Sbjct: 122 LKPAKSAVVKPASPAKKKPVAAKPKSKAVAKPKAVAKSPAKPKAAAKPKPKTTAKPKAAP 181

Query: 121 KPKAAPAKSKSSAVAKPKAAAKTKAAPKPKAKEKPAKAARTSTRTSPGRKAPAPKPVVKK 180
           KPKAAP KSKSSAVAKPKAAAKTKAAPKPKAKEKPAKAARTSTRTSPGRKAPAPKPVVKK
Sbjct: 182 KPKAAPPKSKSSAVAKPKAAAKTKAAPKPKAKEKPAKAARTSTRTSPGRKAPAPKPVVKK 241

Query: 181 APAAKKAPSKSVKAKKVKSLAKKSPAKRGSKGR 213
           APAAKKAPSKSVKAKKVKSLAKK+P+KRGSKGR
Sbjct: 242 APAAKKAPSKSVKAKKVKSLAKKAPSKRGSKGR 274

[Close]

BLAST of Cucsat.G17261.T5 vs. NCBI nr
Match: KAA0057394.1 (histone H1 [Cucumis melo var. makuwa] >TYK30091.1 histone H1 [Cucumis melo var. makuwa])

HSP 1 Score: 325 bits (832), Expect = 3.75e-108
Identity = 204/212 (96.23%), Postives = 206/212 (97.17%), Query Frame = 0


Query: 1   MIKDAIVTLKERTGSSQYAITKFIEEKQKQLPPNFKKLLLFHLKKLVTSGKLVKVKSSFK 60
           MIKDAIVTLKERTGSSQYAITKFIEEKQKQLP NFKKLLLFHLKKLV SGKLVKVKSSFK
Sbjct: 62  MIKDAIVTLKERTGSSQYAITKFIEEKQKQLPSNFKKLLLFHLKKLVASGKLVKVKSSFK 121

Query: 61  LKPAKSAVVKPASPAKKKPVAAKPKSKPVAKPKAVAKSPAKPKAAAKPKPKATPKPKAAP 120
           LKPAKSAVVKPASPAKKKPVAAKPKSK VAKPKAVAKSPAKPKAAAKPKPK T KPKAAP
Sbjct: 122 LKPAKSAVVKPASPAKKKPVAAKPKSKAVAKPKAVAKSPAKPKAAAKPKPKTTAKPKAAP 181

Query: 121 KPKAAPAKSKSSAVAKPKAAAKTKAAPKPKAKEKPAKAARTSTRTSPGRKAPAPKPVVKK 180
           KPKAAP KSKSSAVAKPKAAAKTKAAPKPKAKEKPAKAARTSTRTSPGRKAPAPKPVVKK
Sbjct: 182 KPKAAPPKSKSSAVAKPKAAAKTKAAPKPKAKEKPAKAARTSTRTSPGRKAPAPKPVVKK 241

Query: 181 APAAKKAPSKSVKAKKVKSLAKKSPAKRGSKG 212
           APAAKKAPSKSVKAKKVKSLAKK+P+KRGSKG
Sbjct: 242 APAAKKAPSKSVKAKKVKSLAKKAPSKRGSKG 273

[Close]

BLAST of Cucsat.G17261.T5 vs. NCBI nr
Match: XP_038888055.1 (histone H1-like [Benincasa hispida])

HSP 1 Score: 300 bits (767), Expect = 1.51e-99
Identity = 190/211 (90.05%), Postives = 197/211 (93.36%), Query Frame = 0


Query: 1   MIKDAIVTLKERTGSSQYAITKFIEEKQKQLPPNFKKLLLFHLKKLVTSGKLVKVKSSFK 60
           MIKDAIVTLKERTGSSQYAITKFIEEK+KQLPPNFKK+LLFHLKKLV SGKLVKVK+SFK
Sbjct: 62  MIKDAIVTLKERTGSSQYAITKFIEEKEKQLPPNFKKILLFHLKKLVASGKLVKVKNSFK 121

Query: 61  LKPAKSAVVKPASPAKKKPVAAKPKSKPVAKPKAVAKSPAKPKAAAKPKPKATPKPKAAP 120
           LKPAKSA+VKPA+PAKKKPVAAKPKSK VAKPKAVAKSPAKPKAAAKPKPK   KPKAAP
Sbjct: 122 LKPAKSAIVKPAAPAKKKPVAAKPKSKAVAKPKAVAKSPAKPKAAAKPKPKTAAKPKAAP 181

Query: 121 KPKAAPAKSKSSAVAKPKAAAKTKAAPKPKAKEKPAKAARTSTRTSPGRKAPAPKPVVKK 180
           KPK A AKSKSSAVAKPKAAAKTKAAPKPKAKEKPAK ARTSTRTSPGRKAPAPKP VKK
Sbjct: 182 KPKPATAKSKSSAVAKPKAAAKTKAAPKPKAKEKPAKVARTSTRTSPGRKAPAPKPAVKK 241

Query: 181 APAAKKAPSKSVKAKKVKSLAKKSPAKRGSK 211
           A A KKAP+KSVKAKKVKS AKK+ AKRG K
Sbjct: 242 AQATKKAPAKSVKAKKVKSPAKKALAKRGRK 272

[Close]

BLAST of Cucsat.G17261.T5 vs. NCBI nr
Match: XP_022145924.1 (histone H1 [Momordica charantia])

HSP 1 Score: 294 bits (753), Expect = 2.02e-97
Identity = 188/211 (89.10%), Postives = 191/211 (90.52%), Query Frame = 0


Query: 1   MIKDAIVTLKERTGSSQYAITKFIEEKQKQLPPNFKKLLLFHLKKLVTSGKLVKVKSSFK 60
           MI DAIVTLKERTGSSQYAITKFIEEKQK LP NFKKLLLFHLKKLV SGKLVKVKSSFK
Sbjct: 62  MINDAIVTLKERTGSSQYAITKFIEEKQKHLPSNFKKLLLFHLKKLVASGKLVKVKSSFK 121

Query: 61  LKPAKSAVVKPASPAKKKPVAAKPKSKPVAKPKAVAKSPAKPKAAAKPKPKATPKPKAAP 120
           LKPAKSAVVKP SPAKKKP AAKPK K  AK KAVAKSPAKPKAAAKPKPK   KPKAAP
Sbjct: 122 LKPAKSAVVKPPSPAKKKPAAAKPKPKAAAKTKAVAKSPAKPKAAAKPKPKTAAKPKAAP 181

Query: 121 KPKAAPAKSKSSAVAKPKAAAKTKAAPKPKAKEKPAKAARTSTRTSPGRKAPAPKPVVKK 180
           KPK APAKSKSSAVAKPKAA KTKAAPKPKAKEKPAK ARTSTRTSPGR+APAPKP  KK
Sbjct: 182 KPKPAPAKSKSSAVAKPKAATKTKAAPKPKAKEKPAKVARTSTRTSPGRRAPAPKPAPKK 241

Query: 181 APAAKKAPSKSVKAKKVKSLAKKSPAKRGSK 211
           APAAKKAP+KSVKAKKVKS AKK+PAKRG K
Sbjct: 242 APAAKKAPAKSVKAKKVKSPAKKAPAKRGKK 272

[Close]

BLAST of Cucsat.G17261.T5 vs. ExPASy TrEMBL
Match: A0A0A0KDR2 (H15 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G407650 PE=3 SV=1)

HSP 1 Score: 343 bits (880), Expect = 5.10e-117
Identity = 213/213 (100.00%), Postives = 213/213 (100.00%), Query Frame = 0


Query: 1   MIKDAIVTLKERTGSSQYAITKFIEEKQKQLPPNFKKLLLFHLKKLVTSGKLVKVKSSFK 60
           MIKDAIVTLKERTGSSQYAITKFIEEKQKQLPPNFKKLLLFHLKKLVTSGKLVKVKSSFK
Sbjct: 62  MIKDAIVTLKERTGSSQYAITKFIEEKQKQLPPNFKKLLLFHLKKLVTSGKLVKVKSSFK 121

Query: 61  LKPAKSAVVKPASPAKKKPVAAKPKSKPVAKPKAVAKSPAKPKAAAKPKPKATPKPKAAP 120
           LKPAKSAVVKPASPAKKKPVAAKPKSKPVAKPKAVAKSPAKPKAAAKPKPKATPKPKAAP
Sbjct: 122 LKPAKSAVVKPASPAKKKPVAAKPKSKPVAKPKAVAKSPAKPKAAAKPKPKATPKPKAAP 181

Query: 121 KPKAAPAKSKSSAVAKPKAAAKTKAAPKPKAKEKPAKAARTSTRTSPGRKAPAPKPVVKK 180
           KPKAAPAKSKSSAVAKPKAAAKTKAAPKPKAKEKPAKAARTSTRTSPGRKAPAPKPVVKK
Sbjct: 182 KPKAAPAKSKSSAVAKPKAAAKTKAAPKPKAKEKPAKAARTSTRTSPGRKAPAPKPVVKK 241

Query: 181 APAAKKAPSKSVKAKKVKSLAKKSPAKRGSKGR 213
           APAAKKAPSKSVKAKKVKSLAKKSPAKRGSKGR
Sbjct: 242 APAAKKAPSKSVKAKKVKSLAKKSPAKRGSKGR 274

[Close]

BLAST of Cucsat.G17261.T5 vs. ExPASy TrEMBL
Match: A0A1S3BL93 (histone H1 OS=Cucumis melo OX=3656 GN=LOC103491272 PE=3 SV=1)

HSP 1 Score: 326 bits (836), Expect = 2.52e-110
Identity = 205/213 (96.24%), Postives = 207/213 (97.18%), Query Frame = 0


Query: 1   MIKDAIVTLKERTGSSQYAITKFIEEKQKQLPPNFKKLLLFHLKKLVTSGKLVKVKSSFK 60
           MIKDAIVTLKERTGSSQYAITKFIEEKQKQLP NFKKLLLFHLKKLV SGKLVKVKSSFK
Sbjct: 62  MIKDAIVTLKERTGSSQYAITKFIEEKQKQLPSNFKKLLLFHLKKLVASGKLVKVKSSFK 121

Query: 61  LKPAKSAVVKPASPAKKKPVAAKPKSKPVAKPKAVAKSPAKPKAAAKPKPKATPKPKAAP 120
           LKPAKSAVVKPASPAKKKPVAAKPKSK VAKPKAVAKSPAKPKAAAKPKPK T KPKAAP
Sbjct: 122 LKPAKSAVVKPASPAKKKPVAAKPKSKAVAKPKAVAKSPAKPKAAAKPKPKTTAKPKAAP 181

Query: 121 KPKAAPAKSKSSAVAKPKAAAKTKAAPKPKAKEKPAKAARTSTRTSPGRKAPAPKPVVKK 180
           KPKAAP KSKSSAVAKPKAAAKTKAAPKPKAKEKPAKAARTSTRTSPGRKAPAPKPVVKK
Sbjct: 182 KPKAAPPKSKSSAVAKPKAAAKTKAAPKPKAKEKPAKAARTSTRTSPGRKAPAPKPVVKK 241

Query: 181 APAAKKAPSKSVKAKKVKSLAKKSPAKRGSKGR 213
           APAAKKAPSKSVKAKKVKSLAKK+P+KRGSKGR
Sbjct: 242 APAAKKAPSKSVKAKKVKSLAKKAPSKRGSKGR 274

[Close]

BLAST of Cucsat.G17261.T5 vs. ExPASy TrEMBL
Match: A0A5A7UQL0 (Histone H1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold216G00660 PE=3 SV=1)

HSP 1 Score: 325 bits (832), Expect = 1.81e-108
Identity = 204/212 (96.23%), Postives = 206/212 (97.17%), Query Frame = 0


Query: 1   MIKDAIVTLKERTGSSQYAITKFIEEKQKQLPPNFKKLLLFHLKKLVTSGKLVKVKSSFK 60
           MIKDAIVTLKERTGSSQYAITKFIEEKQKQLP NFKKLLLFHLKKLV SGKLVKVKSSFK
Sbjct: 62  MIKDAIVTLKERTGSSQYAITKFIEEKQKQLPSNFKKLLLFHLKKLVASGKLVKVKSSFK 121

Query: 61  LKPAKSAVVKPASPAKKKPVAAKPKSKPVAKPKAVAKSPAKPKAAAKPKPKATPKPKAAP 120
           LKPAKSAVVKPASPAKKKPVAAKPKSK VAKPKAVAKSPAKPKAAAKPKPK T KPKAAP
Sbjct: 122 LKPAKSAVVKPASPAKKKPVAAKPKSKAVAKPKAVAKSPAKPKAAAKPKPKTTAKPKAAP 181

Query: 121 KPKAAPAKSKSSAVAKPKAAAKTKAAPKPKAKEKPAKAARTSTRTSPGRKAPAPKPVVKK 180
           KPKAAP KSKSSAVAKPKAAAKTKAAPKPKAKEKPAKAARTSTRTSPGRKAPAPKPVVKK
Sbjct: 182 KPKAAPPKSKSSAVAKPKAAAKTKAAPKPKAKEKPAKAARTSTRTSPGRKAPAPKPVVKK 241

Query: 181 APAAKKAPSKSVKAKKVKSLAKKSPAKRGSKG 212
           APAAKKAPSKSVKAKKVKSLAKK+P+KRGSKG
Sbjct: 242 APAAKKAPSKSVKAKKVKSLAKKAPSKRGSKG 273

[Close]

BLAST of Cucsat.G17261.T5 vs. ExPASy TrEMBL
Match: A0A6J1CWP2 (histone H1 OS=Momordica charantia OX=3673 GN=LOC111015272 PE=3 SV=1)

HSP 1 Score: 294 bits (753), Expect = 9.80e-98
Identity = 188/211 (89.10%), Postives = 191/211 (90.52%), Query Frame = 0


Query: 1   MIKDAIVTLKERTGSSQYAITKFIEEKQKQLPPNFKKLLLFHLKKLVTSGKLVKVKSSFK 60
           MI DAIVTLKERTGSSQYAITKFIEEKQK LP NFKKLLLFHLKKLV SGKLVKVKSSFK
Sbjct: 62  MINDAIVTLKERTGSSQYAITKFIEEKQKHLPSNFKKLLLFHLKKLVASGKLVKVKSSFK 121

Query: 61  LKPAKSAVVKPASPAKKKPVAAKPKSKPVAKPKAVAKSPAKPKAAAKPKPKATPKPKAAP 120
           LKPAKSAVVKP SPAKKKP AAKPK K  AK KAVAKSPAKPKAAAKPKPK   KPKAAP
Sbjct: 122 LKPAKSAVVKPPSPAKKKPAAAKPKPKAAAKTKAVAKSPAKPKAAAKPKPKTAAKPKAAP 181

Query: 121 KPKAAPAKSKSSAVAKPKAAAKTKAAPKPKAKEKPAKAARTSTRTSPGRKAPAPKPVVKK 180
           KPK APAKSKSSAVAKPKAA KTKAAPKPKAKEKPAK ARTSTRTSPGR+APAPKP  KK
Sbjct: 182 KPKPAPAKSKSSAVAKPKAATKTKAAPKPKAKEKPAKVARTSTRTSPGRRAPAPKPAPKK 241

Query: 181 APAAKKAPSKSVKAKKVKSLAKKSPAKRGSK 211
           APAAKKAP+KSVKAKKVKS AKK+PAKRG K
Sbjct: 242 APAAKKAPAKSVKAKKVKSPAKKAPAKRGKK 272

[Close]

BLAST of Cucsat.G17261.T5 vs. ExPASy TrEMBL
Match: A0A1S3BGU4 (histone H1-like OS=Cucumis melo OX=3656 GN=LOC103489696 PE=3 SV=1)

HSP 1 Score: 279 bits (714), Expect = 7.22e-92
Identity = 184/211 (87.20%), Postives = 191/211 (90.52%), Query Frame = 0


Query: 1   MIKDAIVTLKERTGSSQYAITKFIEEKQKQLPPNFKKLLLFHLKKLVTSGKLVKVKSSFK 60
           MIKDAIVTLKERTGSSQYAITKFIE KQKQLP NFKKLLLFHLKKL+ SGKLVKVKSSFK
Sbjct: 62  MIKDAIVTLKERTGSSQYAITKFIETKQKQLPSNFKKLLLFHLKKLLASGKLVKVKSSFK 121

Query: 61  LKPAKSAVVKPASPAKKKPVAAKPKSKPVAKPKAVAKSPAKPKAAAKPKPKATPKPKAAP 120
           LKPA   V KPASP KK PVAAKP+SK VAKPKAVAKSPAKPKAAAKPKPK   KPKAAP
Sbjct: 122 LKPA---VAKPASPVKK-PVAAKPRSKTVAKPKAVAKSPAKPKAAAKPKPKTAAKPKAAP 181

Query: 121 KPKAAPAKSKSSAVAKPKAAAKTKAAPKPKAKEKPAKAARTSTRTSPGRKAPAPKPVVKK 180
           KPK APAKSKSSAVAKPKAA KTKAAPKPKAKEKPAK ARTSTRTSPGRKAPAPKPVVKK
Sbjct: 182 KPKPAPAKSKSSAVAKPKAATKTKAAPKPKAKEKPAKVARTSTRTSPGRKAPAPKPVVKK 241

Query: 181 APAAKKAPSKSVKAKKVKSLAKKSPAKRGSK 211
           APAAKKA ++SVK+KKV+S AK +PAKRG K
Sbjct: 242 APAAKKALARSVKSKKVESPAKTAPAKRGRK 268

The following BLAST results are available for this feature:

BLAST of Cucsat.G17261.T5 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P37218	4.0e-36	60.00	Histone H1 OS=Solanum lycopersicum OX=4081 PE=3 SV=1	[more]
P08283	2.6e-35	60.56	Histone H1 OS=Pisum sativum OX=3888 PE=2 SV=1	[more]
P26569	4.5e-35	60.27	Histone H1.2 OS=Arabidopsis thaliana OX=3702 GN=At2g30620 PE=1 SV=1	[more]
P26568	8.5e-26	52.53	Histone H1.1 OS=Arabidopsis thaliana OX=3702 GN=At1g06760 PE=1 SV=1	[more]
P23444	1.2e-24	55.00	Histone H1 OS=Zea mays OX=4577 PE=2 SV=2	[more]

BLAST of Cucsat.G17261.T5 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004140078.1	1.05e-116	100.00	histone H1 [Cucumis sativus] >KGN47855.1 hypothetical protein Csa_003138 [Cucumi...	[more]
XP_008449373.1	5.21e-110	96.24	PREDICTED: histone H1 [Cucumis melo]	[more]
KAA0057394.1	3.75e-108	96.23	histone H1 [Cucumis melo var. makuwa] >TYK30091.1 histone H1 [Cucumis melo var. ...	[more]
XP_038888055.1	1.51e-99	90.05	histone H1-like [Benincasa hispida]	[more]
XP_022145924.1	2.02e-97	89.10	histone H1 [Momordica charantia]	[more]

BLAST of Cucsat.G17261.T5 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KDR2	5.10e-117	100.00	H15 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G407650 PE=3 SV...	[more]
A0A1S3BL93	2.52e-110	96.24	histone H1 OS=Cucumis melo OX=3656 GN=LOC103491272 PE=3 SV=1	[more]
A0A5A7UQL0	1.81e-108	96.23	Histone H1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold216G00660 PE=...	[more]
A0A6J1CWP2	9.80e-98	89.10	histone H1 OS=Momordica charantia OX=3673 GN=LOC111015272 PE=3 SV=1	[more]
A0A1S3BGU4	7.22e-92	87.20	histone H1-like OS=Cucumis melo OX=3656 GN=LOC103489696 PE=3 SV=1	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (B10) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005819	Linker histone H1/H5	PRINTS	PR00624	HISTONEH5	coord: 91..105 score: 40.74 coord: 8..25 score: 43.21 coord: 121..138 score: 39.51 coord: 143..162 score: 23.33
IPR005818	Linker histone H1/H5, domain H15	SMART	SM00526	h15plus2	coord: 1..58 e-value: 1.3E-21 score: 87.8
IPR005818	Linker histone H1/H5, domain H15	PFAM	PF00538	Linker_histone	coord: 1..61 e-value: 1.2E-14 score: 54.3
IPR005818	Linker histone H1/H5, domain H15	PROSITE	PS51504	H15	coord: 1..63 score: 26.481939
IPR005818	Linker histone H1/H5, domain H15	CDD	cd00073	H15	coord: 1..72 e-value: 9.13154E-12 score: 57.2459
IPR036388	Winged helix-like DNA-binding domain superfamily	GENE3D	1.10.10.10		coord: 1..68 e-value: 8.8E-17 score: 63.0
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 63..213
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 189..213
None	No IPR available	PANTHER	PTHR11467:SF131	HISTONE H1.1	coord: 1..211
None	No IPR available	PANTHER	PTHR11467	HISTONE H1	coord: 1..211
IPR036390	Winged helix DNA-binding domain superfamily	SUPERFAMILY	46785	"Winged helix" DNA-binding domain	coord: 1..67

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cucsat.G17261	Cucsat.G17261	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cucsat.G17261.T5.E1	Cucsat.G17261.T5.E1	exon
Cucsat.G17261.T5.E2	Cucsat.G17261.T5.E2	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cucsat.G17261.T5.C1	Cucsat.G17261.T5.C1	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cucsat.G17261.T5	Cucsat.G17261.T5-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006334	nucleosome assembly
biological_process	GO:0030261	chromosome condensation
biological_process	GO:0045910	negative regulation of DNA recombination
biological_process	GO:0016584	nucleosome positioning
cellular_component	GO:0000786	nucleosome
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003690	double-stranded DNA binding
molecular_function	GO:0008168	methyltransferase activity
molecular_function	GO:0031492	nucleosomal DNA binding