Cucsat.G16939.T4 (mRNA) Cucumber (B10) v3

Overview
NameCucsat.G16939.T4
TypemRNA
OrganismCucumis sativus L. var. sativus cv B10 (Cucumber (B10) v3)
DescriptionProstamide/prostaglandin F synthase isoform X1
Locationctg2417: 13386 .. 16645 (+)
RNA-Seq ExpressionCucsat.G16939.T4
SyntenyCucsat.G16939.T4
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
AGAGAAAATATGTAGATTCAAATTCTTAAGTAACATAAATACCAACACTTATGTTGAAATGATATGAGATTTTTGTGGTGAGTGTTGGATTGTTTTGTTGCTAAGCCAATTGGTAAATAGACTCAAGAAAGGAGTAAAGAAACAAGAAAATTCTTGAGCCTCTAATCTAAGAAGAAGAAAAACAAGTAAAGAAACAAGAAAATTCTTGAGCTAAATTTTGTGGCTTACAATTCAATTTCATTTCACAGGGGAAGCTTCAGACTTCAGAGCAATGAATTCAATTTCTGCTCACACCCATAACCCTTTTCGATCTGCTTCCCATTCAATTTTCCCCTCCTCTTTCACTTTCAACTTCCCTTCCCAGTTTCCCTCTCATCCGTTTCTCAATCCTATTTCTCCCAGTTGCATCCTCAATTCTGCAAGATTACGGACCTCTAATCCCCATGTTCGTCGCAATTTCAGGTCGTCTCAAGTTCTCAAGGCTTCCACTTCTTCTGGATATGTCCCAGAGATTGGGGAAATTCTCGGGGATGTTCGTATTTTCACTGCTGGTGGTGAGCCAGTTCTGTTCAAGGATCTTTGGGACCAGACTGAGGTAATCTAACAACCATTTCCTCTTCTGGGTTTGTCCGAATTTACTGATTGAAGTTCTTTTGCTGATTGATTCTGATAATGGGTTTGTGTTTTAATCTGCTTGATCATAATCTGAAAGCTGCAACTGTAGACTGCATAATGCTGAGACGAAGAAGAAGAAGAAATAATTAAGAATTGGACATGGAATTCCTTGGTATTATGCATAAATTATTGGTAATTTATTTGGTCTGAACTTTGATGTTTCTTTCCTTCCAAGTAATGGAAATAAAAAGGGACAGCTTAAGAATGATTCTAACTGAGTAGAGGTGACAGCTTCAGTGTGTAATGTTCCCTTCCTTTTACTTGAGATAGAAACCATGTAGCATATTGAAGAACAGAGCAAAAAGGAGGAAAATGCTGTTATGTTATAAATCTCAAATTTTGGCAGTTTTTGAAAACATTGGTTGAAACTAGATCATAAACCAAAAAGTTTACAGGTGTAATGAGGGTTTATAAGCAAAAAAAAAAAACCAAATGATTACTGAAAAGGGACCTTAGCTAACTGAAATTCCAATTCATAAGCAGTGAGTGTAGTGTATTTGAAAAACTCCACTGCAATGCTATCCTACCCTCTCAGGGACTATTTCATGGTAGAATTAACATCTGGATATATATGATTCATGAGTAACATATCTAGAGAGCTCAATAGTGTTACATTTACTGACTTATACAACTTGATACGTTATGTAACAAGTGGAGGCATCTATATCTCCATATTATAAGTTATAGATTCAAAGATGTGATATTTGATGATATTTGTTTGGTGTTTACGTAGGGAATGGCTGTTGTTGCACTTTTGAGACATTTTGGATGCTTTTGCTGGTAAGTCCTATCAATTTGGACCATTCATTTGCAGTTTTTTTTCCTTTGCAGGAAAAGAGGTTGAATATCTTTTTGTTTTGGTAATTTCATCTGTGTTATTTTTGTGACAGACAGCTACTTGTTCTTATTTCTAGTTGGGAACTTGCTTCCACTCTAAAAGAATCCAAAGAAAGATTTGATTCATCTGGTGTTAAATTAATAGCTGTAGGCATCGGTACTCCAAATAAAGCACGTATCCTAGCCGAGCGGGTATCAACTTTTAATTTTCCATGGCTGCATCATGTTTTTAACTCTTAGAAGACATCTCTTTATTAATAGTTATACTATGTAGCTTAGATGCTCTAAATCAAAATAAATCATAATACTATATTCCTGACTTCATTAAATTTGGATATTGTTATTTATTGTTTTAATGTTAATTTTGAAGAGATTCTAATTATGTAAACATGCATGACATTACATTTTAAAAAGTTTCTAATTATAAGTGATTTAACTTTTTAAGTTTGTATGTAATAAGTATTTAGTGTTAACTCTCCTTAGCATAATGATATATGACTTTTACAGTATTGATTTTGTTAACACAAATTGGTTAGATTTTTCTTCTAAAGAAAGAAGTAGGGATTAAATAACCACAACCCTAAAGTTTGTAGACTGAACTTATAATATTATCATCTCTCTTTTGGCTTCTTCTGTTCTGCTTTCATGGCATTAACATTGCTTCTTCATCCTTCAAATTCCAGTTGCCTTTTCCAATGGATTGCCTTTATGCTGATCCTGATAGAAAGGTAATACGAAGCTATAAATCTCCTTTCTATAGCATCATTACATTCGTTGTCGTTTTTCTTTGTTTTTTCAAGTTGAAGAACATAGGTGATATTGAACATTCAACCTATAAGATGATTATGATTTATGCAATCTCTGAAGTAACCTTGAGCAATGATCTAGACATAAAAACAATATGCCAAAGTGAATAATTTGAATTGTTCTCATCTATTTTGATATTTGCCTCTAATTCTTGTGAAATCTAATCAAAATATTGTTCTTACAGGCATATGATTTACTAGGTCTATACTATGGCTTTGGTCGTACATTCCTTAATCCAGCTAGTGTAAGAATTCTCCTTCCATGTACTTCATGTACTCCACATAAATTTTCTTTCCGTTTGAACTTTGTTTTACCCCCAATTGTCAAATGTTTCTAGGTCAAGGTGTTTTCAAAGACGAGATTGGACATCATGCGAGAAGCCATGAAAAACTATACTTTTGAGGCTACCCCGGACGATAAAAGCAGCGTGTTGCAGCAGGTCTTATTTGTGTTTTAATCACATGAAGAACACTAGCCTTTAGATCTTCTATTTGTTGAAACTTTCTTATTTCATGTTTGTCGTCATTAGGGAGGGATGTTTGTTTTCAAAGGCAAGCAACTGTTGTATGCTCGAAAAGACGAAGGTACTGGCGACCACGCTCCCTTAGATGATATCTACAACATCTGCTGTACTCAAGTCCCTGCAACCTGAAGCAATTGAACTGTTGTTGTATGCTCAAAAACGATGAAGGTATCAATGGCCACACTTCGACATCCATTGTTGAGTCATAGCATGAATCTTCACTCTTGGTTCTTAGATATTTTGATTGGTATGTGTCCCTTCTTATAGGGTGATTCAATGAAATACATAGTGATATTACAATTTATCTATGAATATGTTTTATGTTAAACATTTTCAATACTTTTTCAAAAATACTCTTTAGTTCAAATAGTAAACATAGATATTTTAGACCTTGCGTCTTTCATCAATGAAACATAAT

Coding sequence (CDS)

ATGGATTGCCTTTATGCTGATCCTGATAGAAAGGCATATGATTTACTAGGTCTATACTATGGCTTTGGTCGTACATTCCTTAATCCAGCTAGTGTCAAGGTGTTTTCAAAGACGAGATTGGACATCATGCGAGAAGCCATGAAAAACTATACTTTTGAGGCTACCCCGGACGATAAAAGCAGCGTGTTGCAGCAGGGAGGGATGTTTGTTTTCAAAGGCAAGCAACTGTTGTATGCTCGAAAAGACGAAGGTACTGGCGACCACGCTCCCTTAGATGATATCTACAACATCTGCTGTACTCAAGTCCCTGCAACCTGA

Protein sequence

MDCLYADPDRKAYDLLGLYYGFGRTFLNPASVKVFSKTRLDIMREAMKNYTFEATPDDKSSVLQQGGMFVFKGKQLLYARKDEGTGDHAPLDDIYNICCTQVPAT
Homology
BLAST of Cucsat.G16939.T4 vs. NCBI nr
Match: XP_031736381.1 (prostamide/prostaglandin F synthase isoform X2 [Cucumis sativus])

HSP 1 Score: 223 bits (567), Expect = 2.00e-72
Identity = 105/105 (100.00%), Postives = 105/105 (100.00%), Query Frame = 0

Query: 1   MDCLYADPDRKAYDLLGLYYGFGRTFLNPASVKVFSKTRLDIMREAMKNYTFEATPDDKS 60
           MDCLYADPDRKAYDLLGLYYGFGRTFLNPASVKVFSKTRLDIMREAMKNYTFEATPDDKS
Sbjct: 70  MDCLYADPDRKAYDLLGLYYGFGRTFLNPASVKVFSKTRLDIMREAMKNYTFEATPDDKS 129

Query: 61  SVLQQGGMFVFKGKQLLYARKDEGTGDHAPLDDIYNICCTQVPAT 105
           SVLQQGGMFVFKGKQLLYARKDEGTGDHAPLDDIYNICCTQVPAT
Sbjct: 130 SVLQQGGMFVFKGKQLLYARKDEGTGDHAPLDDIYNICCTQVPAT 174

BLAST of Cucsat.G16939.T4 vs. NCBI nr
Match: XP_004149685.1 (prostamide/prostaglandin F synthase isoform X1 [Cucumis sativus] >KGN61990.1 hypothetical protein Csa_006427 [Cucumis sativus])

HSP 1 Score: 223 bits (567), Expect = 4.55e-71
Identity = 105/105 (100.00%), Postives = 105/105 (100.00%), Query Frame = 0

Query: 1   MDCLYADPDRKAYDLLGLYYGFGRTFLNPASVKVFSKTRLDIMREAMKNYTFEATPDDKS 60
           MDCLYADPDRKAYDLLGLYYGFGRTFLNPASVKVFSKTRLDIMREAMKNYTFEATPDDKS
Sbjct: 167 MDCLYADPDRKAYDLLGLYYGFGRTFLNPASVKVFSKTRLDIMREAMKNYTFEATPDDKS 226

Query: 61  SVLQQGGMFVFKGKQLLYARKDEGTGDHAPLDDIYNICCTQVPAT 105
           SVLQQGGMFVFKGKQLLYARKDEGTGDHAPLDDIYNICCTQVPAT
Sbjct: 227 SVLQQGGMFVFKGKQLLYARKDEGTGDHAPLDDIYNICCTQVPAT 271

BLAST of Cucsat.G16939.T4 vs. NCBI nr
Match: XP_016902132.1 (PREDICTED: prostamide/prostaglandin F synthase isoform X2 [Cucumis melo])

HSP 1 Score: 212 bits (539), Expect = 1.23e-67
Identity = 101/105 (96.19%), Postives = 102/105 (97.14%), Query Frame = 0

Query: 1   MDCLYADPDRKAYDLLGLYYGFGRTFLNPASVKVFSKTRLDIMREAMKNYTFEATPDDKS 60
           MDCLYADPDRKAYDLLGLYYGFGRTFLNPASVKVFSKTR D+MREAMKNYT EATPDDKS
Sbjct: 108 MDCLYADPDRKAYDLLGLYYGFGRTFLNPASVKVFSKTRFDVMREAMKNYTLEATPDDKS 167

Query: 61  SVLQQGGMFVFKGKQLLYARKDEGTGDHAPLDDIYNICCTQVPAT 105
           SVLQQGGMFVFKGKQLLYARKDEGTGDHAPLDDIYNICC QVPAT
Sbjct: 168 SVLQQGGMFVFKGKQLLYARKDEGTGDHAPLDDIYNICC-QVPAT 211

BLAST of Cucsat.G16939.T4 vs. NCBI nr
Match: XP_008457741.1 (PREDICTED: prostamide/prostaglandin F synthase isoform X1 [Cucumis melo] >XP_016902130.1 PREDICTED: prostamide/prostaglandin F synthase isoform X1 [Cucumis melo] >XP_016902131.1 PREDICTED: prostamide/prostaglandin F synthase isoform X1 [Cucumis melo] >KAA0045765.1 prostamide/prostaglandin F synthase isoform X1 [Cucumis melo var. makuwa] >TYJ99517.1 prostamide/prostaglandin F synthase isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 212 bits (539), Expect = 7.82e-67
Identity = 101/105 (96.19%), Postives = 102/105 (97.14%), Query Frame = 0

Query: 1   MDCLYADPDRKAYDLLGLYYGFGRTFLNPASVKVFSKTRLDIMREAMKNYTFEATPDDKS 60
           MDCLYADPDRKAYDLLGLYYGFGRTFLNPASVKVFSKTR D+MREAMKNYT EATPDDKS
Sbjct: 167 MDCLYADPDRKAYDLLGLYYGFGRTFLNPASVKVFSKTRFDVMREAMKNYTLEATPDDKS 226

Query: 61  SVLQQGGMFVFKGKQLLYARKDEGTGDHAPLDDIYNICCTQVPAT 105
           SVLQQGGMFVFKGKQLLYARKDEGTGDHAPLDDIYNICC QVPAT
Sbjct: 227 SVLQQGGMFVFKGKQLLYARKDEGTGDHAPLDDIYNICC-QVPAT 270

BLAST of Cucsat.G16939.T4 vs. NCBI nr
Match: XP_038902955.1 (prostamide/prostaglandin F synthase [Benincasa hispida])

HSP 1 Score: 199 bits (506), Expect = 6.39e-62
Identity = 94/104 (90.38%), Postives = 99/104 (95.19%), Query Frame = 0

Query: 1   MDCLYADPDRKAYDLLGLYYGFGRTFLNPASVKVFSKTRLDIMREAMKNYTFEATPDDKS 60
           MDCLYADPDRKAYDLLGLYYGFGRTF NPAS KVFSK+RL+ MREAMKNY+ EATPDDKS
Sbjct: 161 MDCLYADPDRKAYDLLGLYYGFGRTFFNPASAKVFSKSRLEAMREAMKNYSLEATPDDKS 220

Query: 61  SVLQQGGMFVFKGKQLLYARKDEGTGDHAPLDDIYNICCTQVPA 104
           SVLQQGGMFVFKGKQLLYARKDEGTGDHAPL+DIYNICC +VPA
Sbjct: 221 SVLQQGGMFVFKGKQLLYARKDEGTGDHAPLEDIYNICC-RVPA 263

BLAST of Cucsat.G16939.T4 vs. ExPASy TrEMBL
Match: A0A0A0LJF1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G279270 PE=4 SV=1)

HSP 1 Score: 223 bits (567), Expect = 2.20e-71
Identity = 105/105 (100.00%), Postives = 105/105 (100.00%), Query Frame = 0

Query: 1   MDCLYADPDRKAYDLLGLYYGFGRTFLNPASVKVFSKTRLDIMREAMKNYTFEATPDDKS 60
           MDCLYADPDRKAYDLLGLYYGFGRTFLNPASVKVFSKTRLDIMREAMKNYTFEATPDDKS
Sbjct: 167 MDCLYADPDRKAYDLLGLYYGFGRTFLNPASVKVFSKTRLDIMREAMKNYTFEATPDDKS 226

Query: 61  SVLQQGGMFVFKGKQLLYARKDEGTGDHAPLDDIYNICCTQVPAT 105
           SVLQQGGMFVFKGKQLLYARKDEGTGDHAPLDDIYNICCTQVPAT
Sbjct: 227 SVLQQGGMFVFKGKQLLYARKDEGTGDHAPLDDIYNICCTQVPAT 271

BLAST of Cucsat.G16939.T4 vs. ExPASy TrEMBL
Match: A0A1S4E1N0 (prostamide/prostaglandin F synthase isoform X2 OS=Cucumis melo OX=3656 GN=LOC103497363 PE=4 SV=1)

HSP 1 Score: 212 bits (539), Expect = 5.94e-68
Identity = 101/105 (96.19%), Postives = 102/105 (97.14%), Query Frame = 0

Query: 1   MDCLYADPDRKAYDLLGLYYGFGRTFLNPASVKVFSKTRLDIMREAMKNYTFEATPDDKS 60
           MDCLYADPDRKAYDLLGLYYGFGRTFLNPASVKVFSKTR D+MREAMKNYT EATPDDKS
Sbjct: 108 MDCLYADPDRKAYDLLGLYYGFGRTFLNPASVKVFSKTRFDVMREAMKNYTLEATPDDKS 167

Query: 61  SVLQQGGMFVFKGKQLLYARKDEGTGDHAPLDDIYNICCTQVPAT 105
           SVLQQGGMFVFKGKQLLYARKDEGTGDHAPLDDIYNICC QVPAT
Sbjct: 168 SVLQQGGMFVFKGKQLLYARKDEGTGDHAPLDDIYNICC-QVPAT 211

BLAST of Cucsat.G16939.T4 vs. ExPASy TrEMBL
Match: A0A1S4E1M8 (prostamide/prostaglandin F synthase isoform X1 OS=Cucumis melo OX=3656 GN=LOC103497363 PE=4 SV=1)

HSP 1 Score: 212 bits (539), Expect = 3.79e-67
Identity = 101/105 (96.19%), Postives = 102/105 (97.14%), Query Frame = 0

Query: 1   MDCLYADPDRKAYDLLGLYYGFGRTFLNPASVKVFSKTRLDIMREAMKNYTFEATPDDKS 60
           MDCLYADPDRKAYDLLGLYYGFGRTFLNPASVKVFSKTR D+MREAMKNYT EATPDDKS
Sbjct: 167 MDCLYADPDRKAYDLLGLYYGFGRTFLNPASVKVFSKTRFDVMREAMKNYTLEATPDDKS 226

Query: 61  SVLQQGGMFVFKGKQLLYARKDEGTGDHAPLDDIYNICCTQVPAT 105
           SVLQQGGMFVFKGKQLLYARKDEGTGDHAPLDDIYNICC QVPAT
Sbjct: 227 SVLQQGGMFVFKGKQLLYARKDEGTGDHAPLDDIYNICC-QVPAT 270

BLAST of Cucsat.G16939.T4 vs. ExPASy TrEMBL
Match: A0A5D3BK60 (Prostamide/prostaglandin F synthase isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold123G00840 PE=4 SV=1)

HSP 1 Score: 212 bits (539), Expect = 3.79e-67
Identity = 101/105 (96.19%), Postives = 102/105 (97.14%), Query Frame = 0

Query: 1   MDCLYADPDRKAYDLLGLYYGFGRTFLNPASVKVFSKTRLDIMREAMKNYTFEATPDDKS 60
           MDCLYADPDRKAYDLLGLYYGFGRTFLNPASVKVFSKTR D+MREAMKNYT EATPDDKS
Sbjct: 167 MDCLYADPDRKAYDLLGLYYGFGRTFLNPASVKVFSKTRFDVMREAMKNYTLEATPDDKS 226

Query: 61  SVLQQGGMFVFKGKQLLYARKDEGTGDHAPLDDIYNICCTQVPAT 105
           SVLQQGGMFVFKGKQLLYARKDEGTGDHAPLDDIYNICC QVPAT
Sbjct: 227 SVLQQGGMFVFKGKQLLYARKDEGTGDHAPLDDIYNICC-QVPAT 270

BLAST of Cucsat.G16939.T4 vs. ExPASy TrEMBL
Match: A0A6J1ETX1 (prostamide/prostaglandin F synthase OS=Cucurbita moschata OX=3662 GN=LOC111436511 PE=4 SV=1)

HSP 1 Score: 190 bits (482), Expect = 1.51e-58
Identity = 86/99 (86.87%), Postives = 92/99 (92.93%), Query Frame = 0

Query: 1   MDCLYADPDRKAYDLLGLYYGFGRTFLNPASVKVFSKTRLDIMREAMKNYTFEATPDDKS 60
           MDCLYADPDRKAYDLLGLYYGFGRTF NPAS KVFSK+R   +REAMKNYT EATPDD+S
Sbjct: 165 MDCLYADPDRKAYDLLGLYYGFGRTFFNPASTKVFSKSRFSTLREAMKNYTLEATPDDRS 224

Query: 61  SVLQQGGMFVFKGKQLLYARKDEGTGDHAPLDDIYNICC 99
           SVLQQGGM VFKGKQLLYARKDEGTGDHAPLD+IY++CC
Sbjct: 225 SVLQQGGMLVFKGKQLLYARKDEGTGDHAPLDEIYDVCC 263

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
XP_031736381.12.00e-72100.00prostamide/prostaglandin F synthase isoform X2 [Cucumis sativus][more]
XP_004149685.14.55e-71100.00prostamide/prostaglandin F synthase isoform X1 [Cucumis sativus] >KGN61990.1 hyp... [more]
XP_016902132.11.23e-6796.19PREDICTED: prostamide/prostaglandin F synthase isoform X2 [Cucumis melo][more]
XP_008457741.17.82e-6796.19PREDICTED: prostamide/prostaglandin F synthase isoform X1 [Cucumis melo] >XP_016... [more]
XP_038902955.16.39e-6290.38prostamide/prostaglandin F synthase [Benincasa hispida][more]
Match NameE-valueIdentityDescription
A0A0A0LJF12.20e-71100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G279270 PE=4 SV=1[more]
A0A1S4E1N05.94e-6896.19prostamide/prostaglandin F synthase isoform X2 OS=Cucumis melo OX=3656 GN=LOC103... [more]
A0A1S4E1M83.79e-6796.19prostamide/prostaglandin F synthase isoform X1 OS=Cucumis melo OX=3656 GN=LOC103... [more]
A0A5D3BK603.79e-6796.19Prostamide/prostaglandin F synthase isoform X1 OS=Cucumis melo var. makuwa OX=11... [more]
A0A6J1ETX11.51e-5886.87prostamide/prostaglandin F synthase OS=Cucurbita moschata OX=3662 GN=LOC11143651... [more]
InterPro
Analysis Name: InterPro Annotations of Cucumber (B10) v3
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR032801Peroxiredoxin-like 2A/B/CPFAMPF13911AhpC-TSA_2coord: 2..84
e-value: 4.1E-13
score: 49.4
IPR032801Peroxiredoxin-like 2A/B/CPANTHERPTHR28630FAMILY NOT NAMEDcoord: 1..100
NoneNo IPR availablePANTHERPTHR28630:SF26OS03G0729300 PROTEINcoord: 1..100

Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Cucsat.G16939Cucsat.G16939gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Cucsat.G16939.T4.E1Cucsat.G16939.T4.E1exon
Cucsat.G16939.T4.E2Cucsat.G16939.T4.E2exon
Cucsat.G16939.T4.E3Cucsat.G16939.T4.E3exon
Cucsat.G16939.T4.E4Cucsat.G16939.T4.E4exon
Cucsat.G16939.T4.E5Cucsat.G16939.T4.E5exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Cucsat.G16939.T4.C1Cucsat.G16939.T4.C1CDS
Cucsat.G16939.T4.C2Cucsat.G16939.T4.C2CDS
Cucsat.G16939.T4.C3Cucsat.G16939.T4.C3CDS
Cucsat.G16939.T4.C4Cucsat.G16939.T4.C4CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Cucsat.G16939.T4Cucsat.G16939.T4-proteinpolypeptide


GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0098869 cellular oxidant detoxification
molecular_function GO:0016209 antioxidant activity
molecular_function GO:0004601 peroxidase activity