Cucsat.G15556.T6 (mRNA) Cucumber (B10) v3

Overview
NameCucsat.G15556.T6
TypemRNA
OrganismCucumis sativus L. var. sativus cv B10 (Cucumber (B10) v3)
DescriptionPolyadenylate-binding protein
Locationctg2009: 1328282 .. 1332104 (+)
RNA-Seq ExpressionCucsat.G15556.T6
SyntenyCucsat.G15556.T6
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ACCGAAAAAAGTTACCGTTACCGGTTAGACTTGACCTCGTCAGATGGGCCGCAGTGTATTGCGATGGACGGTTGAGATTTCTTAGGTAGATTTTTTCTCTAGGGTTTACCCAGAACTTCCCACATATATAAAGCCTTACATCTTCTCCCTCTTCCTCTTTCTTTTAGTGCAGTTTCATCTGCCCTCCAAACCCTCGCGTTTTTTTTTTAATTTGTTCACCGTCTCTTTCTCCGTCGCTCTCTACGTCACGCGCCGCCCCGCTTTCCGGCGGCTACTCATTTCTCCTATCGGGTCCTTCCGATTATCTATCCTATCCATTTTTCACTATCATTTATCTCATCCTGAAAAATCATAACCAATTATTCCTTTCTTTTAGTAGTAGGAAGATTTTTCCTTCGGGGTTGTTTATTTTTGCTTCAATTTCCTATTATCTTTAAACGGTTTTTGTTATCCTCCCCCGGTTGTTCGTTGCGTTTTGCTGGCCTTTTTTGAGTGTCTGAAGATTCGCCGTTCATTCATTCCTTCTTAGGGTTTGTTTCTGAATAACAAAATTAGGAGAGGGAAGTGAGGAGAAAAGAAAAAAAGAGCAAAAACAAAAACATATTAATTCATTGAAAGATTTTTTTGAACAGAGTGAAATTATTTCCAGTATGGCGACTCAGGTGCAAGCTCAGCCTCAGAATGCTATTTCCGGCATCAATCCAGCGGCGAATGGCGGTGCCAATTTTGTCACTACTTCTTTGTACGTCGGAGATCTGGACCTGAATGTCACGGATTCGCAGCTTTATGACATTTTCAATCAGGTGGGCCAGGTAGTTTCGGTTCGGGTTTGCCGAGACTTGACGACCCGGCGATCTCTCGGTTATGGCTATGTCAACTACAGCAACCCACAAGATGGTCAGTTTGTCTTCACTTTTCTTCATTTCCCTCTACTGTTTAATGTAATTTGTTTCATTTTTTTTAGTTTAATATTTAGGGTGAACATTTCTCGTTCGGCTGATTGCTTGGGCTAGTAAAATGTAGAGTTGATATGTAAATATATGTGTGGATCATGTTTATTAATTCATTGATTTATTTCTCTATCTGAGATTTTTGAATCCCAAAAAGTTAAGCTTGTAGCAATCTAATGTTTAGTCGGGAAATTAGTGACACCAAAGTAGATAGCTTGTATAAAAGGTCGGATGATTGCTTTTAGGGTCCAATAATGAATAATGTTTACTGTATGATGGTTATTTCTTTCACTAATAAATTGTAAAACGCCAGACTGTTTGTTTCATTCTGTGGAGAATTAGAAAGTCGGGCTGTGGGTGGACTAGGAGGAGATGCTGTGGGTCATTTTGTTGCGTTGTTTGGGCTTCACTCTTCAGGATAAGAATGTTACCTTCTACGGTCTTGAAGTACATCTGTTTGGAAATGATAATGCAAATAGCATGAGTACATCTTAAATGTTCCATATCTCAAGTTGATGGTTGCTAGTCACACTACTGGGAGGATCTGAATTTGTTAGATTGTGATGCATATTTTATGATTTCAGATAACTTTGAACTAGAAACTTGATACAAGAATTTAGTTTTATTATTGAAAGCTCTATGGTGATTTGTCCTTCATTGAATGACAAATGTTCCATGTAACAACAATTATTTATTTTCATCACCATATACACCTGTAGCAATTTTGCTTAATTTTGGGCCTTTGGCTACCTTTATGTAAATTCTTTCACAATTAAGTTTGTGCCTTGAATTGTTTAAGCTTTTCATACTGATGTATGTAGTATGGACTCCTTATTCTTGGTGAGCTGTCAGAGTCCAACACGCGAAAATCTATGTCCCATATTATTTTTTTATTATTATTTTGGCACAAGCACACCAACGAACATACACAAACACATTAAAGAAACCCCAAACCTTTCAAATCAACAATGACCCTGAAGAGGGGTGGTCAGCGTCGGCAGCAAAGGGTGGGAGATTGAGCATCTTTGACAGTGGCAGTGCAGAGAGAGGAGAATGGGGGGGGGGGGGGGGGGGGTGAGTAGGGGGAAGAGCAAGGGTGGCTGTGGATGTGAGATGAGCAGAACAGTGGAGGGAAAAAGAAAGAACGTTATTTAGGGTTACGTTCTTACTTTCAAATGGGCTTTTGGCTTTATTACATTCCTATGTGATGTGTCTGTTGGGTTTTTATTTTATTTATTTTTTAATGGCCTTTTCTTCTTCGTTATTATTTACAAAACATTATTTTAATAATTAATGAAAAAGGTATTTTGGGTTTGGTATTGTTGATATAAAATGATGTCCTATTTTTTTTTTAAATTTGCGGATTGTAGGTCCTTGTTCTTTCTTGTCAATTGAAAAGTAGTATTTCAAATTATCATGCGATTCAAACAATGAATTTCATATTCTAATACCTCACTAAATTTTAAATAGCCACGTTTTTTTCTCTATTGTAATCCTATTTTGCCTGAACAGCTGCAAGAGCATTGGATGTGCTGAACTTTACCCCTTTGAATGGAAAGCCTATTAGAGTGATGTATTCTCACCGTGACCCAAGCATTCGCAAGAGTGGGGCTGGAAATATATTCATCAAGGTACTAGTATTTTTCATTTTATGTTTATTATCTTGTCCATTTTATTTGAATTGTTTATTTGATTCTGTTCTTGAGTTAACTTTTCACTCTAATTTTCAGAATTTAGACAAGGCAATTGACCACAAAGCTCTACATGATACATTTTCTGCATTTGGTAGTATCCTGTCTTGCAAAGTGGCTTTAGATTCCTCTGGCCAGTCAAAAGGCTATGGTTTTGTGCAATTTGACAATGAGGAGTCTGCTCTGAAAGCTATTGAGAAGCTGAACGGTATGCTGTTGAATGATAAGCAAGTTTATGTAGGACCTTTTCTTCGTAAACAAGAAAGAGATGGTGTTGTTGACAAATCCAAATTTAACAATGTATTTGTAAAAAATCTTTCTGAGACTACTACTGAAGAGGATTTGAACAAAGCTTTTTCTGAATTTGGGACACTCACGAGTATTGTTGTGATGAGGGATGCTGATGGCAAATCAAGATGCTTTGGATTTGTTAATTTTGAAAATGCCGATGATGCTGCTAGGGCAGTTGACACCCTTAACGGAAAGTTAGTTGATGATAAGGAGTGGTATGTTGGAAAAGCACAGAAAAAATCTGAAAGAGAAGTTGAATTAAAGCACCGGTTTGAACAAACTATGAAAGAAGCAGCTGACAAGTACCAAGGGGCAAATTTGTACATTAAAAATTTAGATGATAGCATTGGTGATGATAAGCTTAAGGAGCTGTTTGCTCCATTTGGCACAATCACCTCATGCAAGGTTGTAATAATATTGCAGTTTAACTCATGACACTACCTTTGGTTTAAGCCTCTTGTGGTTAAAGTATTATGGTTATTTTGTGTGTTTTAGGTCATGCGCGACCCCAATGGCATAAGCAGAGGTTCTGGATTTGTTGCATTCTCAACCCCTGATGAGGCATCTAGAGCTGTGAGTAGATGTGCTTATTATTGTTATTATTTCTATTTATGATTTGGAAACATCCATACACATGGTTAATTTATTTGTTGTGGATTATCCACTCATATATGCTTGTCATTAATGATACAAAATATGGAAGGACTGTAATAGTTCACTTGGTTTAATTGATAGCTTGTGGAGATGAATGGCAAAATGGTTGTTAGTAAACCATTATATGTAGCACTTGCACAGCGGAAGGAAGATAGGAGAGCCAGATTGCAGGTACTTCCGTTGATGTTTTCATACTTATTCTTGGCATTACCATTGTATTGTAACTTCAATTGTCAG

Coding sequence (CDS)

ATGGCGACTCAGGTGCAAGCTCAGCCTCAGAATGCTATTTCCGGCATCAATCCAGCGGCGAATGGCGGTGCCAATTTTGTCACTACTTCTTTGTACGTCGGAGATCTGGACCTGAATGTCACGGATTCGCAGCTTTATGACATTTTCAATCAGGTGGGCCAGGTAGTTTCGGTTCGGGTTTGCCGAGACTTGACGACCCGGCGATCTCTCGGTTATGGCTATGTCAACTACAGCAACCCACAAGATGCTGCAAGAGCATTGGATGTGCTGAACTTTACCCCTTTGAATGGAAAGCCTATTAGAGTGATGTATTCTCACCGTGACCCAAGCATTCGCAAGAGTGGGGCTGGAAATATATTCATCAAGAATTTAGACAAGGCAATTGACCACAAAGCTCTACATGATACATTTTCTGCATTTGGTAGTATCCTGTCTTGCAAAGTGGCTTTAGATTCCTCTGGCCAGTCAAAAGGCTATGGTTTTGTGCAATTTGACAATGAGGAGTCTGCTCTGAAAGCTATTGAGAAGCTGAACGGTATGCTGTTGAATGATAAGCAAGTTTATGTAGGACCTTTTCTTCGTAAACAAGAAAGAGATGGTGTTGTTGACAAATCCAAATTTAACAATGTATTTGTAAAAAATCTTTCTGAGACTACTACTGAAGAGGATTTGAACAAAGCTTTTTCTGAATTTGGGACACTCACGAGTATTGTTGTGATGAGGGATGCTGATGGCAAATCAAGATGCTTTGGATTTGTTAATTTTGAAAATGCCGATGATGCTGCTAGGGCAGTTGACACCCTTAACGGAAAGTTAGTTGATGATAAGGAGTGGTATGTTGGAAAAGCACAGAAAAAATCTGAAAGAGAAGTTGAATTAAAGCACCGGTTTGAACAAACTATGAAAGAAGCAGCTGACAAGTACCAAGGGGCAAATTTGTACATTAAAAATTTAGATGATAGCATTGGTGATGATAAGCTTAAGGAGCTGTTTGCTCCATTTGGCACAATCACCTCATGCAAGGTCATGCGCGACCCCAATGGCATAAGCAGAGGTTCTGGATTTGTTGCATTCTCAACCCCTGATGAGGCATCTAGAGCTCTTGTGGAGATGAATGGCAAAATGGTTGTTAGTAAACCATTATATGTAGCACTTGCACAGCGGAAGGAAGATAGGAGAGCCAGATTGCAGGTACTTCCGTTGATGTTTTCATACTTATTCTTGGCATTACCATTGTATTGTAACTTCAATTGTCAG

Protein sequence

MATQVQAQPQNAISGINPAANGGANFVTTSLYVGDLDLNVTDSQLYDIFNQVGQVVSVRVCRDLTTRRSLGYGYVNYSNPQDAARALDVLNFTPLNGKPIRVMYSHRDPSIRKSGAGNIFIKNLDKAIDHKALHDTFSAFGSILSCKVALDSSGQSKGYGFVQFDNEESALKAIEKLNGMLLNDKQVYVGPFLRKQERDGVVDKSKFNNVFVKNLSETTTEEDLNKAFSEFGTLTSIVVMRDADGKSRCFGFVNFENADDAARAVDTLNGKLVDDKEWYVGKAQKKSEREVELKHRFEQTMKEAADKYQGANLYIKNLDDSIGDDKLKELFAPFGTITSCKVMRDPNGISRGSGFVAFSTPDEASRALVEMNGKMVVSKPLYVALAQRKEDRRARLQVLPLMFSYLFLALPLYCNFNCQ
Homology
[Close]
BLAST of Cucsat.G15556.T6 vs. ExPASy Swiss-Prot
Match: P42731 (Polyadenylate-binding protein 2 OS=Arabidopsis thaliana OX=3702 GN=PAB2 PE=1 SV=1)

HSP 1 Score: 593.6 bits (1529), Expect = 1.8e-168
Identity = 290/400 (72.50%), Postives = 345/400 (86.25%), Query Frame = 0 

Query: 4   QVQAQPQNAISGI---NPAANGGA---NFVTTSLYVGDLDLNVTDSQLYDIFNQVGQVVS 63
           Q+Q Q  N  +      PA +GGA    F  TSLYVGDLD NVTDSQL+D F Q+G VV+
Sbjct: 5   QLQGQTPNGSTAAVTSAPATSGGATATQFGNTSLYVGDLDFNVTDSQLFDAFGQMGTVVT 64

Query: 64  VRVCRDLTTRRSLGYGYVNYSNPQDAARALDVLNFTPLNGKPIRVMYSHRDPSIRKSGAG 123
           VRVCRDL TRRSLGYGYVN++NPQDAARA+  LN+ PL GKPIRVMYSHRDPS+R+SGAG
Sbjct: 65  VRVCRDLVTRRSLGYGYVNFTNPQDAARAIQELNYIPLYGKPIRVMYSHRDPSVRRSGAG 124

Query: 124 NIFIKNLDKAIDHKALHDTFSAFGSILSCKVALDSSGQSKGYGFVQFDNEESALKAIEKL 183
           NIFIKNLD++IDHKALHDTFS+FG+I+SCKVA+DSSGQSKGYGFVQ+ NEESA KAIEKL
Sbjct: 125 NIFIKNLDESIDHKALHDTFSSFGNIVSCKVAVDSSGQSKGYGFVQYANEESAQKAIEKL 184

Query: 184 NGMLLNDKQVYVGPFLRKQERDGVVDKSKFNNVFVKNLSETTTEEDLNKAFSEFGTLTSI 243
           NGMLLNDKQVYVGPFLR+QERD   +K+KF NV+VKNL+E+TT++DL  AF E+G +TS 
Sbjct: 185 NGMLLNDKQVYVGPFLRRQERDSTANKTKFTNVYVKNLAESTTDDDLKNAFGEYGKITSA 244

Query: 244 VVMRDADGKSRCFGFVNFENADDAARAVDTLNGKLVDDKEWYVGKAQKKSEREVELKHRF 303
           VVM+D +GKS+ FGFVNFENADDAARAV++LNG   DDKEWYVG+AQKKSERE EL+ R+
Sbjct: 245 VVMKDGEGKSKGFGFVNFENADDAARAVESLNGHKFDDKEWYVGRAQKKSERETELRVRY 304

Query: 304 EQTMKEAADKYQGANLYIKNLDDSIGDDKLKELFAPFGTITSCKVMRDPNGISRGSGFVA 363
           EQ +KEAADK+Q +NLY+KNLD SI D+KLKE+F+PFGT+TS KVMRDPNG S+GSGFVA
Sbjct: 305 EQNLKEAADKFQSSNLYVKNLDPSISDEKLKEIFSPFGTVTSSKVMRDPNGTSKGSGFVA 364

Query: 364 FSTPDEASRALVEMNGKMVVSKPLYVALAQRKEDRRARLQ 398
           F+TP+EA+ A+ +++GKM+ SKPLYVA+AQRKEDRR RLQ
Sbjct: 365 FATPEEATEAMSQLSGKMIESKPLYVAIAQRKEDRRVRLQ 404

[Close]
BLAST of Cucsat.G15556.T6 vs. ExPASy Swiss-Prot
Match: Q9FXA2 (Polyadenylate-binding protein 8 OS=Arabidopsis thaliana OX=3702 GN=PAB8 PE=1 SV=1)

HSP 1 Score: 592.4 bits (1526), Expect = 3.9e-168
Identity = 292/391 (74.68%), Postives = 338/391 (86.45%), Query Frame = 0 

Query: 7   AQPQNAISGINPAANGGANFVTTSLYVGDLDLNVTDSQLYDIFNQVGQVVSVRVCRDLTT 66
           A+   A +G   AA G A   TTSLYVGDLD  VTDSQL++ F Q GQVVSVRVCRD+TT
Sbjct: 23  AEAAAAAAGAAAAAAGAAQQGTTSLYVGDLDATVTDSQLFEAFTQAGQVVSVRVCRDMTT 82

Query: 67  RRSLGYGYVNYSNPQDAARALDVLNFTPLNGKPIRVMYSHRDPSIRKSGAGNIFIKNLDK 126
           RRSLGYGYVNY+ PQDA+RAL+ LNF  LNG+ IRVMYS RDPS+RKSG GNIFIKNLDK
Sbjct: 83  RRSLGYGYVNYATPQDASRALNELNFMALNGRAIRVMYSVRDPSLRKSGVGNIFIKNLDK 142

Query: 127 AIDHKALHDTFSAFGSILSCKVALDSSGQSKGYGFVQFDNEESALKAIEKLNGMLLNDKQ 186
           +IDHKALH+TFSAFG ILSCKVA+D SGQSKGYGFVQ+D +E+A  AI+KLNGMLLNDKQ
Sbjct: 143 SIDHKALHETFSAFGPILSCKVAVDPSGQSKGYGFVQYDTDEAAQGAIDKLNGMLLNDKQ 202

Query: 187 VYVGPFLRKQERDGVVDKSKFNNVFVKNLSETTTEEDLNKAFSEFGTLTSIVVMRDADGK 246
           VYVGPF+ K +RD   +K KF NV+VKNLSE+ ++E+LNK F EFG  TS V+MRD +GK
Sbjct: 203 VYVGPFVHKLQRDPSGEKVKFTNVYVKNLSESLSDEELNKVFGEFGVTTSCVIMRDGEGK 262

Query: 247 SRCFGFVNFENADDAARAVDTLNGKLVDDKEWYVGKAQKKSEREVELKHRFEQTMKEAAD 306
           S+ FGFVNFEN+DDAARAVD LNGK  DDKEW+VGKAQKKSERE ELK +FEQ++KEAAD
Sbjct: 263 SKGFGFVNFENSDDAARAVDALNGKTFDDKEWFVGKAQKKSERETELKQKFEQSLKEAAD 322

Query: 307 KYQGANLYIKNLDDSIGDDKLKELFAPFGTITSCKVMRDPNGISRGSGFVAFSTPDEASR 366
           K QG+NLY+KNLD+S+ DDKL+E FAPFGTITSCKVMRDP+G+SRGSGFVAFSTP+EA+R
Sbjct: 323 KSQGSNLYVKNLDESVTDDKLREHFAPFGTITSCKVMRDPSGVSRGSGFVAFSTPEEATR 382

Query: 367 ALVEMNGKMVVSKPLYVALAQRKEDRRARLQ 398
           A+ EMNGKM+V+KPLYVALAQRKEDR+ARLQ
Sbjct: 383 AITEMNGKMIVTKPLYVALAQRKEDRKARLQ 413

[Close]
BLAST of Cucsat.G15556.T6 vs. ExPASy Swiss-Prot
Match: O22173 (Polyadenylate-binding protein 4 OS=Arabidopsis thaliana OX=3702 GN=PAB4 PE=1 SV=1)

HSP 1 Score: 531.6 bits (1368), Expect = 8.2e-150
Identity = 257/383 (67.10%), Postives = 307/383 (80.16%), Query Frame = 0 

Query: 15  GINPAANGGANFVTTSLYVGDLDLNVTDSQLYDIFNQVGQVVSVRVCRDLTTRRSLGYGY 74
           G+    +G  +    SLYVGDLD NVTDSQLYD F +V QVVSVRVCRD  T  SLGYGY
Sbjct: 32  GVGGGGDGVTHGALCSLYVGDLDFNVTDSQLYDYFTEVCQVVSVRVCRDAATNTSLGYGY 91

Query: 75  VNYSNPQDAARALDVLNFTPLNGKPIRVMYSHRDPSIRKSGAGNIFIKNLDKAIDHKALH 134
           VNYSN  DA +A+  LN++ LNGK IR+ YS RD S R+SG GN+F+KNLDK++D+K LH
Sbjct: 92  VNYSNTDDAEKAMQKLNYSYLNGKMIRITYSSRDSSARRSGVGNLFVKNLDKSVDNKTLH 151

Query: 135 DTFSAFGSILSCKVALDSSGQSKGYGFVQFDNEESALKAIEKLNGMLLNDKQVYVGPFLR 194
           + FS  G+I+SCKVA D  GQS+GYGFVQFD E+SA  AIEKLNG +LNDKQ++VGPFLR
Sbjct: 152 EAFSGCGTIVSCKVATDHMGQSRGYGFVQFDTEDSAKNAIEKLNGKVLNDKQIFVGPFLR 211

Query: 195 KQERDGVVDKSKFNNVFVKNLSETTTEEDLNKAFSEFGTLTSIVVMRDADGKSRCFGFVN 254
           K+ER+   DK KF NV+VKNLSE TT+++L   F ++G+++S VVMRD DGKSRCFGFVN
Sbjct: 212 KEERESAADKMKFTNVYVKNLSEATTDDELKTTFGQYGSISSAVVMRDGDGKSRCFGFVN 271

Query: 255 FENADDAARAVDTLNGKLVDDKEWYVGKAQKKSEREVELKHRFEQTMKEAADKYQGANLY 314
           FEN +DAARAV+ LNGK  DDKEWYVGKAQKKSERE+EL  R+EQ   +  +K+ G NLY
Sbjct: 272 FENPEDAARAVEALNGKKFDDKEWYVGKAQKKSERELELSRRYEQGSSDGGNKFDGLNLY 331

Query: 315 IKNLDDSIGDDKLKELFAPFGTITSCKVMRDPNGISRGSGFVAFSTPDEASRALVEMNGK 374
           +KNLDD++ D+KL+ELFA FGTITSCKVMRDP+G S+GSGFVAFS   EASR L EMNGK
Sbjct: 332 VKNLDDTVTDEKLRELFAEFGTITSCKVMRDPSGTSKGSGFVAFSAASEASRVLNEMNGK 391

Query: 375 MVVSKPLYVALAQRKEDRRARLQ 398
           MV  KPLYVALAQRKE+RRA+LQ
Sbjct: 392 MVGGKPLYVALAQRKEERRAKLQ 414

[Close]
BLAST of Cucsat.G15556.T6 vs. ExPASy Swiss-Prot
Match: O64380 (Polyadenylate-binding protein 3 OS=Arabidopsis thaliana OX=3702 GN=PAB3 PE=2 SV=1)

HSP 1 Score: 464.2 bits (1193), Expect = 1.6e-129
Identity = 238/398 (59.80%), Postives = 296/398 (74.37%), Query Frame = 0 

Query: 4   QVQAQPQNAISGINPAANGGANFVTTSLYVGDLDLNVTDSQLYDIFNQVGQVVSVRVCRD 63
           Q   Q   +I   +P          +SLY GDLD  VT++ L+D+F  V  VVSVRVCRD
Sbjct: 24  QTSVQVPVSIPLPSPVVVADQTHPNSSLYAGDLDPKVTEAHLFDLFKHVANVVSVRVCRD 83

Query: 64  LTTRRSLGYGYVNYSNPQDAARALDVLNFTPLNGKPIRVMYSHRDPSIRKSGAGNIFIKN 123
              RRSLGY Y+N+SNP DA RA++ LN+TPL  +PIR+M S+RDPS R SG GNIFIKN
Sbjct: 84  -QNRRSLGYAYINFSNPNDAYRAMEALNYTPLFDRPIRIMLSNRDPSTRLSGKGNIFIKN 143

Query: 124 LDKAIDHKALHDTFSAFGSILSCKVALDSSGQSKGYGFVQFDNEESALKAIEKLNGMLLN 183
           LD +ID+KAL +TFS+FG+ILSCKVA+D +G+SKGYGFVQF+ EESA  AI+KLNGML+N
Sbjct: 144 LDASIDNKALFETFSSFGTILSCKVAMDVTGRSKGYGFVQFEKEESAQAAIDKLNGMLMN 203

Query: 184 DKQVYVGPFLRKQE--RDGVVDKSKFNNVFVKNLSETTTEEDLNKAFSEFGTLTSIVVMR 243
           DKQV+VG F+R+QE  RD      +F NV+VKNL +   E++L K F +FG ++S VVMR
Sbjct: 204 DKQVFVGHFIRRQERARDENTPTPRFTNVYVKNLPKEIGEDELRKTFGKFGVISSAVVMR 263

Query: 244 DADGKSRCFGFVNFENADDAARAVDTLNGKLVDDKEWYVGKAQKKSEREVELKHRFEQTM 303
           D  G SRCFGFVNFE  + AA AV+ +NG  + D   YVG+AQKKSERE EL+ +FEQ  
Sbjct: 264 DQSGNSRCFGFVNFECTEAAASAVEKMNGISLGDDVLYVGRAQKKSEREEELRRKFEQER 323

Query: 304 KEAADKYQGANLYIKNLDDSIGDDKLKELFAPFGTITSCKVMRDPNGISRGSGFVAFSTP 363
               +K QGANLY+KNLDDS+ D+KLKE+F+ +G +TS KVM +P G+SRG GFVA+S P
Sbjct: 324 INRFEKSQGANLYLKNLDDSVDDEKLKEMFSEYGNVTSSKVMLNPQGMSRGFGFVAYSNP 383

Query: 364 DEASRALVEMNGKMVVSKPLYVALAQRKEDRRARLQVL 400
           +EA RAL EMNGKM+  KPLY+ALAQRKEDRRA LQ L
Sbjct: 384 EEALRALSEMNGKMIGRKPLYIALAQRKEDRRAHLQAL 420

[Close]
BLAST of Cucsat.G15556.T6 vs. ExPASy Swiss-Prot
Match: Q05196 (Polyadenylate-binding protein 5 OS=Arabidopsis thaliana OX=3702 GN=PAB5 PE=1 SV=3)

HSP 1 Score: 444.9 bits (1143), Expect = 1.0e-123
Identity = 225/392 (57.40%), Postives = 297/392 (75.77%), Query Frame = 0 

Query: 12  AISGINPAANGGANFVTTSLYVGDLDLNVTDSQLYDIFNQVGQVVSVRVCRDLTTRRSLG 71
           A++    AA        +SLYVGDLD +V +S L D+FNQV  V ++RVCRDL T RSLG
Sbjct: 42  AVAAAAAAAEALQTHPNSSLYVGDLDPSVNESHLLDLFNQVAPVHNLRVCRDL-THRSLG 101

Query: 72  YGYVNYSNPQDAARALDVLNFTPLNGKPIRVMYSHRDPSIRKSGAGNIFIKNLDKAIDHK 131
           Y YVN++NP+DA+RA++ LN+ P+  +PIR+M S+RDPS R SG GN+FIKNLD +ID+K
Sbjct: 102 YAYVNFANPEDASRAMESLNYAPIRDRPIRIMLSNRDPSTRLSGKGNVFIKNLDASIDNK 161

Query: 132 ALHDTFSAFGSILSCKVALDSSGQSKGYGFVQFDNEESALKAIEKLNGMLLNDKQVYVGP 191
           AL++TFS+FG+ILSCKVA+D  G+SKGYGFVQF+ EE+A  AI+KLNGMLLNDKQV+VG 
Sbjct: 162 ALYETFSSFGTILSCKVAMDVVGRSKGYGFVQFEKEETAQAAIDKLNGMLLNDKQVFVGH 221

Query: 192 FLRKQER----DGVVDKSKFNNVFVKNLSETTTEEDLNKAFSEFGTLTSIVVMRDADGKS 251
           F+R+Q+R     G V    F NV+VKNL +  T+++L K F ++G ++S VVM+D  G S
Sbjct: 222 FVRRQDRARSESGAV--PSFTNVYVKNLPKEITDDELKKTFGKYGDISSAVVMKDQSGNS 281

Query: 252 RCFGFVNFENADDAARAVDTLNGKLVDDKEWYVGKAQKKSEREVELKHRFEQTMKEAADK 311
           R FGFVNF + + AA AV+ +NG  + +   YVG+AQKKS+RE EL+ +FEQ      +K
Sbjct: 282 RSFGFVNFVSPEAAAVAVEKMNGISLGEDVLYVGRAQKKSDREEELRRKFEQERISRFEK 341

Query: 312 YQGANLYIKNLDDSIGDDKLKELFAPFGTITSCKVMRDPNGISRGSGFVAFSTPDEASRA 371
            QG+NLY+KNLDDS+ D+KLKE+F+ +G +TSCKVM +  G+SRG GFVA+S P+EA  A
Sbjct: 342 LQGSNLYLKNLDDSVNDEKLKEMFSEYGNVTSCKVMMNSQGLSRGFGFVAYSNPEEALLA 401

Query: 372 LVEMNGKMVVSKPLYVALAQRKEDRRARLQVL 400
           + EMNGKM+  KPLYVALAQRKE+R+A LQ L
Sbjct: 402 MKEMNGKMIGRKPLYVALAQRKEERQAHLQSL 430

[Close]
BLAST of Cucsat.G15556.T6 vs. NCBI nr
Match: XP_004140705.1 (polyadenylate-binding protein 8 [Cucumis sativus] >KGN57514.1 hypothetical protein Csa_010531 [Cucumis sativus])

HSP 1 Score: 778 bits (2009), Expect = 5.01e-279
Identity = 397/397 (100.00%), Postives = 397/397 (100.00%), Query Frame = 0 

Query: 1   MATQVQAQPQNAISGINPAANGGANFVTTSLYVGDLDLNVTDSQLYDIFNQVGQVVSVRV 60
           MATQVQAQPQNAISGINPAANGGANFVTTSLYVGDLDLNVTDSQLYDIFNQVGQVVSVRV
Sbjct: 1   MATQVQAQPQNAISGINPAANGGANFVTTSLYVGDLDLNVTDSQLYDIFNQVGQVVSVRV 60

Query: 61  CRDLTTRRSLGYGYVNYSNPQDAARALDVLNFTPLNGKPIRVMYSHRDPSIRKSGAGNIF 120
           CRDLTTRRSLGYGYVNYSNPQDAARALDVLNFTPLNGKPIRVMYSHRDPSIRKSGAGNIF
Sbjct: 61  CRDLTTRRSLGYGYVNYSNPQDAARALDVLNFTPLNGKPIRVMYSHRDPSIRKSGAGNIF 120

Query: 121 IKNLDKAIDHKALHDTFSAFGSILSCKVALDSSGQSKGYGFVQFDNEESALKAIEKLNGM 180
           IKNLDKAIDHKALHDTFSAFGSILSCKVALDSSGQSKGYGFVQFDNEESALKAIEKLNGM
Sbjct: 121 IKNLDKAIDHKALHDTFSAFGSILSCKVALDSSGQSKGYGFVQFDNEESALKAIEKLNGM 180

Query: 181 LLNDKQVYVGPFLRKQERDGVVDKSKFNNVFVKNLSETTTEEDLNKAFSEFGTLTSIVVM 240
           LLNDKQVYVGPFLRKQERDGVVDKSKFNNVFVKNLSETTTEEDLNKAFSEFGTLTSIVVM
Sbjct: 181 LLNDKQVYVGPFLRKQERDGVVDKSKFNNVFVKNLSETTTEEDLNKAFSEFGTLTSIVVM 240

Query: 241 RDADGKSRCFGFVNFENADDAARAVDTLNGKLVDDKEWYVGKAQKKSEREVELKHRFEQT 300
           RDADGKSRCFGFVNFENADDAARAVDTLNGKLVDDKEWYVGKAQKKSEREVELKHRFEQT
Sbjct: 241 RDADGKSRCFGFVNFENADDAARAVDTLNGKLVDDKEWYVGKAQKKSEREVELKHRFEQT 300

Query: 301 MKEAADKYQGANLYIKNLDDSIGDDKLKELFAPFGTITSCKVMRDPNGISRGSGFVAFST 360
           MKEAADKYQGANLYIKNLDDSIGDDKLKELFAPFGTITSCKVMRDPNGISRGSGFVAFST
Sbjct: 301 MKEAADKYQGANLYIKNLDDSIGDDKLKELFAPFGTITSCKVMRDPNGISRGSGFVAFST 360

Query: 361 PDEASRALVEMNGKMVVSKPLYVALAQRKEDRRARLQ 397
           PDEASRALVEMNGKMVVSKPLYVALAQRKEDRRARLQ
Sbjct: 361 PDEASRALVEMNGKMVVSKPLYVALAQRKEDRRARLQ 397

[Close]
BLAST of Cucsat.G15556.T6 vs. NCBI nr
Match: XP_008456142.1 (PREDICTED: polyadenylate-binding protein 2-like isoform X1 [Cucumis melo] >TYK13938.1 polyadenylate-binding protein 2-like isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 772 bits (1993), Expect = 1.36e-276
Identity = 394/397 (99.24%), Postives = 394/397 (99.24%), Query Frame = 0 

Query: 1   MATQVQAQPQNAISGINPAANGGANFVTTSLYVGDLDLNVTDSQLYDIFNQVGQVVSVRV 60
           MA QVQAQPQNAISGINPAANGGANFVTTSLYVGDLDLNVTDSQLYDIFNQVGQVVSVRV
Sbjct: 1   MAAQVQAQPQNAISGINPAANGGANFVTTSLYVGDLDLNVTDSQLYDIFNQVGQVVSVRV 60

Query: 61  CRDLTTRRSLGYGYVNYSNPQDAARALDVLNFTPLNGKPIRVMYSHRDPSIRKSGAGNIF 120
           CRDLTTRRSLGYGYVNYSNPQDAARALDVLNFTPLNGKPIRVMYSHRDPSIRKSGAGNIF
Sbjct: 61  CRDLTTRRSLGYGYVNYSNPQDAARALDVLNFTPLNGKPIRVMYSHRDPSIRKSGAGNIF 120

Query: 121 IKNLDKAIDHKALHDTFSAFGSILSCKVALDSSGQSKGYGFVQFDNEESALKAIEKLNGM 180
           IKNLDKAIDHKALHDTFSAFGSILSCKVALDSSGQSKGYGFVQFDNEESA KAIEKLNGM
Sbjct: 121 IKNLDKAIDHKALHDTFSAFGSILSCKVALDSSGQSKGYGFVQFDNEESAQKAIEKLNGM 180

Query: 181 LLNDKQVYVGPFLRKQERDGVVDKSKFNNVFVKNLSETTTEEDLNKAFSEFGTLTSIVVM 240
           LLNDKQVYVGPFLRKQERDGVVDKSKFNNVFVKNLSETTTEEDLNKAFSEFGTLTSIVVM
Sbjct: 181 LLNDKQVYVGPFLRKQERDGVVDKSKFNNVFVKNLSETTTEEDLNKAFSEFGTLTSIVVM 240

Query: 241 RDADGKSRCFGFVNFENADDAARAVDTLNGKLVDDKEWYVGKAQKKSEREVELKHRFEQT 300
           RDADGKSRCFGFVNFENADDAARAVD LNGKLVDDKEWYVGKAQKKSEREVELKHRFEQT
Sbjct: 241 RDADGKSRCFGFVNFENADDAARAVDALNGKLVDDKEWYVGKAQKKSEREVELKHRFEQT 300

Query: 301 MKEAADKYQGANLYIKNLDDSIGDDKLKELFAPFGTITSCKVMRDPNGISRGSGFVAFST 360
           MKEAADKYQGANLYIKNLDDSIGDDKLKELFAPFGTITSCKVMRDPNGISRGSGFVAFST
Sbjct: 301 MKEAADKYQGANLYIKNLDDSIGDDKLKELFAPFGTITSCKVMRDPNGISRGSGFVAFST 360

Query: 361 PDEASRALVEMNGKMVVSKPLYVALAQRKEDRRARLQ 397
           PDEASRALVEMNGKMVVSKPLYVALAQRKEDRRARLQ
Sbjct: 361 PDEASRALVEMNGKMVVSKPLYVALAQRKEDRRARLQ 397

[Close]
BLAST of Cucsat.G15556.T6 vs. NCBI nr
Match: XP_038892025.1 (polyadenylate-binding protein 2-like [Benincasa hispida])

HSP 1 Score: 769 bits (1987), Expect = 1.07e-275
Identity = 391/397 (98.49%), Postives = 394/397 (99.24%), Query Frame = 0 

Query: 1   MATQVQAQPQNAISGINPAANGGANFVTTSLYVGDLDLNVTDSQLYDIFNQVGQVVSVRV 60
           MA QVQAQPQNAISG+NPAANGGANFVTTSLYVGDLDLNVTDSQLYDIFNQVGQVVSVRV
Sbjct: 1   MAAQVQAQPQNAISGVNPAANGGANFVTTSLYVGDLDLNVTDSQLYDIFNQVGQVVSVRV 60

Query: 61  CRDLTTRRSLGYGYVNYSNPQDAARALDVLNFTPLNGKPIRVMYSHRDPSIRKSGAGNIF 120
           CRDLTTRRSLGYGYVNYSNPQDAARALDVLNFTPLNGKPIRVMYSHRDPSIRKSGAGNIF
Sbjct: 61  CRDLTTRRSLGYGYVNYSNPQDAARALDVLNFTPLNGKPIRVMYSHRDPSIRKSGAGNIF 120

Query: 121 IKNLDKAIDHKALHDTFSAFGSILSCKVALDSSGQSKGYGFVQFDNEESALKAIEKLNGM 180
           IKNLDKAIDHKALHDTFSAFGSILSCKVALDSSGQSKGYGFVQFDNEESA KAIEKLNGM
Sbjct: 121 IKNLDKAIDHKALHDTFSAFGSILSCKVALDSSGQSKGYGFVQFDNEESAQKAIEKLNGM 180

Query: 181 LLNDKQVYVGPFLRKQERDGVVDKSKFNNVFVKNLSETTTEEDLNKAFSEFGTLTSIVVM 240
           LLNDKQVYVGPFLRKQERDGVVDKSKFNNVFVKNLSETTTEEDLNKAFSEFGTLTSIVVM
Sbjct: 181 LLNDKQVYVGPFLRKQERDGVVDKSKFNNVFVKNLSETTTEEDLNKAFSEFGTLTSIVVM 240

Query: 241 RDADGKSRCFGFVNFENADDAARAVDTLNGKLVDDKEWYVGKAQKKSEREVELKHRFEQT 300
           RDADGKSRCFGFVNFENADDAARAVD LNGKLVDDKEWYVGKAQKKSEREVELKHRFEQT
Sbjct: 241 RDADGKSRCFGFVNFENADDAARAVDALNGKLVDDKEWYVGKAQKKSEREVELKHRFEQT 300

Query: 301 MKEAADKYQGANLYIKNLDDSIGDDKLKELFAPFGTITSCKVMRDPNGISRGSGFVAFST 360
           MKEAADKYQGANLYIKNLDDSIGDDKLKELFAPFGTITSCKVMRDPNGISRGSGFVAFST
Sbjct: 301 MKEAADKYQGANLYIKNLDDSIGDDKLKELFAPFGTITSCKVMRDPNGISRGSGFVAFST 360

Query: 361 PDEASRALVEMNGKMVVSKPLYVALAQRKEDRRARLQ 397
           P+EASRAL+EMNGKMVVSKPLYVALAQRKEDRRARLQ
Sbjct: 361 PEEASRALIEMNGKMVVSKPLYVALAQRKEDRRARLQ 397

[Close]
BLAST of Cucsat.G15556.T6 vs. NCBI nr
Match: KAA0037137.1 (polyadenylate-binding protein 2-like isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 767 bits (1981), Expect = 9.41e-275
Identity = 394/398 (98.99%), Postives = 394/398 (98.99%), Query Frame = 0 

Query: 1   MATQVQAQPQNAISGINPAANGGANFVTTSLYVGDLDLNVTDSQLYDIFNQVGQVVSVRV 60
           MA QVQAQPQNAISGINPAANGGANFVTTSLYVGDLDLNVTDSQLYDIFNQVGQVVSVRV
Sbjct: 1   MAAQVQAQPQNAISGINPAANGGANFVTTSLYVGDLDLNVTDSQLYDIFNQVGQVVSVRV 60

Query: 61  CRDLTTRRSLGYGYVNYSNPQDAARALDVLNFTPLNGKPIRVMYSHRDPSIRKSGAGNIF 120
           CRDLTTRRSLGYGYVNYSNPQDAARALDVLNFTPLNGKPIRVMYSHRDPSIRKSGAGNIF
Sbjct: 61  CRDLTTRRSLGYGYVNYSNPQDAARALDVLNFTPLNGKPIRVMYSHRDPSIRKSGAGNIF 120

Query: 121 IKNLDKAIDHKALHDTFSAFGSILSCKVALDSSGQSKGYGFVQFDNEESALKAIEKLNGM 180
           IKNLDKAIDHKALHDTFSAFGSILSCKVALDSSGQSKGYGFVQFDNEESA KAIEKLNGM
Sbjct: 121 IKNLDKAIDHKALHDTFSAFGSILSCKVALDSSGQSKGYGFVQFDNEESAQKAIEKLNGM 180

Query: 181 LLNDKQVYVGPFLRKQERDGVVDKSKFNNVFVKNLSETTTEEDLNKAFSEFGTLTSIVVM 240
           LLNDKQVYVGPFLRKQERDGVVDKSKFNNVFVKNLSETTTEEDLNKAFSEFGTLTSIVVM
Sbjct: 181 LLNDKQVYVGPFLRKQERDGVVDKSKFNNVFVKNLSETTTEEDLNKAFSEFGTLTSIVVM 240

Query: 241 RDADGKSRCFGFVNFENADDAARAVDTLNGKLVDDKEWYVGKAQKKSEREVELKHRFEQT 300
           RDADGKSRCFGFVNFENADDAARAVD LNGKLVDDKEWYVGKAQKKSEREVELKHRFEQT
Sbjct: 241 RDADGKSRCFGFVNFENADDAARAVDALNGKLVDDKEWYVGKAQKKSEREVELKHRFEQT 300

Query: 301 MKEAADKYQGANLYIKNLDDSIGDDKLKELFAPFGTITSCKV-MRDPNGISRGSGFVAFS 360
           MKEAADKYQGANLYIKNLDDSIGDDKLKELFAPFGTITSCKV MRDPNGISRGSGFVAFS
Sbjct: 301 MKEAADKYQGANLYIKNLDDSIGDDKLKELFAPFGTITSCKVVMRDPNGISRGSGFVAFS 360

Query: 361 TPDEASRALVEMNGKMVVSKPLYVALAQRKEDRRARLQ 397
           TPDEASRALVEMNGKMVVSKPLYVALAQRKEDRRARLQ
Sbjct: 361 TPDEASRALVEMNGKMVVSKPLYVALAQRKEDRRARLQ 398

[Close]
BLAST of Cucsat.G15556.T6 vs. NCBI nr
Match: KAG7014972.1 (Polyadenylate-binding protein 2, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 746 bits (1927), Expect = 1.24e-270
Identity = 380/398 (95.48%), Postives = 389/398 (97.74%), Query Frame = 0 

Query: 1   MATQVQAQPQNAISGINPAANGGANFVTTSLYVGDLDLNVTDSQLYDIFNQVGQVVSVRV 60
           MA QVQ+QPQNAISGINPAANGGANFVTTSLYVGDLDLNVTDSQLYDIFNQVGQVVSVRV
Sbjct: 1   MAAQVQSQPQNAISGINPAANGGANFVTTSLYVGDLDLNVTDSQLYDIFNQVGQVVSVRV 60

Query: 61  CRDLTTRRSLGYGYVNYSNPQDAARALDVLNFTPLNGKPIRVMYSHRDPSIRKSGAGNIF 120
           CRDLTTRRSLGYGYVNYSNPQDAARALDVLNFTPLNGKPIRVMYSHRDPSIRKSGAGNIF
Sbjct: 61  CRDLTTRRSLGYGYVNYSNPQDAARALDVLNFTPLNGKPIRVMYSHRDPSIRKSGAGNIF 120

Query: 121 IKNLDKAIDHKALHDTFSAFGSILSCKVALDSSGQSKGYGFVQFDNEESALKAIEKLNGM 180
           IKNLDKAIDHKALHDTFSAFGSILSCKVALDSSGQSKGYGFVQFDNEES  KAIEKLNGM
Sbjct: 121 IKNLDKAIDHKALHDTFSAFGSILSCKVALDSSGQSKGYGFVQFDNEESGQKAIEKLNGM 180

Query: 181 LLNDKQVYVGPFLRKQERDGVVDKSKFNNVFVKNLSETTTEEDLNKAFSEFGTLTSIVVM 240
           LLNDKQVYVGPFLRKQERDGVVDKSKFNNVFVKN SETT+EE+LN  FSEFGT+TSIVVM
Sbjct: 181 LLNDKQVYVGPFLRKQERDGVVDKSKFNNVFVKNFSETTSEEELNDVFSEFGTITSIVVM 240

Query: 241 RDADGKSRCFGFVNFENADDAARAVDTLNGKLVDDKEWYVGKAQKKSEREVELKHRFEQT 300
           RDADGKS+CFGFVNFE+ADDAARAVD LNGKLVDDKEWYVGKAQKKSEREVELK+RFEQT
Sbjct: 241 RDADGKSKCFGFVNFESADDAARAVDALNGKLVDDKEWYVGKAQKKSEREVELKNRFEQT 300

Query: 301 MKEAADKYQGANLYIKNLDDSIGDDKLKELFAPFGTITSCKVMRDPNGISRGSGFVAFST 360
           MKEAADKYQGANLYIKNLDDSI DDKLKELFA FGTITSCKVMRDPNGISRGSGFVAFST
Sbjct: 301 MKEAADKYQGANLYIKNLDDSIVDDKLKELFASFGTITSCKVMRDPNGISRGSGFVAFST 360

Query: 361 PDEASRALVEMNGKMVVSKPLYVALAQRKEDRRARLQV 398
           P+EASRAL+EMNGKMVVSKPLYVALAQRKEDRRARLQV
Sbjct: 361 PEEASRALMEMNGKMVVSKPLYVALAQRKEDRRARLQV 398

[Close]
BLAST of Cucsat.G15556.T6 vs. ExPASy TrEMBL
Match: A0A0A0L989 (Polyadenylate-binding protein OS=Cucumis sativus OX=3659 GN=Csa_3G202720 PE=3 SV=1)

HSP 1 Score: 778 bits (2009), Expect = 2.43e-279
Identity = 397/397 (100.00%), Postives = 397/397 (100.00%), Query Frame = 0 

Query: 1   MATQVQAQPQNAISGINPAANGGANFVTTSLYVGDLDLNVTDSQLYDIFNQVGQVVSVRV 60
           MATQVQAQPQNAISGINPAANGGANFVTTSLYVGDLDLNVTDSQLYDIFNQVGQVVSVRV
Sbjct: 1   MATQVQAQPQNAISGINPAANGGANFVTTSLYVGDLDLNVTDSQLYDIFNQVGQVVSVRV 60

Query: 61  CRDLTTRRSLGYGYVNYSNPQDAARALDVLNFTPLNGKPIRVMYSHRDPSIRKSGAGNIF 120
           CRDLTTRRSLGYGYVNYSNPQDAARALDVLNFTPLNGKPIRVMYSHRDPSIRKSGAGNIF
Sbjct: 61  CRDLTTRRSLGYGYVNYSNPQDAARALDVLNFTPLNGKPIRVMYSHRDPSIRKSGAGNIF 120

Query: 121 IKNLDKAIDHKALHDTFSAFGSILSCKVALDSSGQSKGYGFVQFDNEESALKAIEKLNGM 180
           IKNLDKAIDHKALHDTFSAFGSILSCKVALDSSGQSKGYGFVQFDNEESALKAIEKLNGM
Sbjct: 121 IKNLDKAIDHKALHDTFSAFGSILSCKVALDSSGQSKGYGFVQFDNEESALKAIEKLNGM 180

Query: 181 LLNDKQVYVGPFLRKQERDGVVDKSKFNNVFVKNLSETTTEEDLNKAFSEFGTLTSIVVM 240
           LLNDKQVYVGPFLRKQERDGVVDKSKFNNVFVKNLSETTTEEDLNKAFSEFGTLTSIVVM
Sbjct: 181 LLNDKQVYVGPFLRKQERDGVVDKSKFNNVFVKNLSETTTEEDLNKAFSEFGTLTSIVVM 240

Query: 241 RDADGKSRCFGFVNFENADDAARAVDTLNGKLVDDKEWYVGKAQKKSEREVELKHRFEQT 300
           RDADGKSRCFGFVNFENADDAARAVDTLNGKLVDDKEWYVGKAQKKSEREVELKHRFEQT
Sbjct: 241 RDADGKSRCFGFVNFENADDAARAVDTLNGKLVDDKEWYVGKAQKKSEREVELKHRFEQT 300

Query: 301 MKEAADKYQGANLYIKNLDDSIGDDKLKELFAPFGTITSCKVMRDPNGISRGSGFVAFST 360
           MKEAADKYQGANLYIKNLDDSIGDDKLKELFAPFGTITSCKVMRDPNGISRGSGFVAFST
Sbjct: 301 MKEAADKYQGANLYIKNLDDSIGDDKLKELFAPFGTITSCKVMRDPNGISRGSGFVAFST 360

Query: 361 PDEASRALVEMNGKMVVSKPLYVALAQRKEDRRARLQ 397
           PDEASRALVEMNGKMVVSKPLYVALAQRKEDRRARLQ
Sbjct: 361 PDEASRALVEMNGKMVVSKPLYVALAQRKEDRRARLQ 397

[Close]
BLAST of Cucsat.G15556.T6 vs. ExPASy TrEMBL
Match: A0A5D3CRX0 (Polyadenylate-binding protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold832G001390 PE=3 SV=1)

HSP 1 Score: 772 bits (1993), Expect = 6.58e-277
Identity = 394/397 (99.24%), Postives = 394/397 (99.24%), Query Frame = 0 

Query: 1   MATQVQAQPQNAISGINPAANGGANFVTTSLYVGDLDLNVTDSQLYDIFNQVGQVVSVRV 60
           MA QVQAQPQNAISGINPAANGGANFVTTSLYVGDLDLNVTDSQLYDIFNQVGQVVSVRV
Sbjct: 1   MAAQVQAQPQNAISGINPAANGGANFVTTSLYVGDLDLNVTDSQLYDIFNQVGQVVSVRV 60

Query: 61  CRDLTTRRSLGYGYVNYSNPQDAARALDVLNFTPLNGKPIRVMYSHRDPSIRKSGAGNIF 120
           CRDLTTRRSLGYGYVNYSNPQDAARALDVLNFTPLNGKPIRVMYSHRDPSIRKSGAGNIF
Sbjct: 61  CRDLTTRRSLGYGYVNYSNPQDAARALDVLNFTPLNGKPIRVMYSHRDPSIRKSGAGNIF 120

Query: 121 IKNLDKAIDHKALHDTFSAFGSILSCKVALDSSGQSKGYGFVQFDNEESALKAIEKLNGM 180
           IKNLDKAIDHKALHDTFSAFGSILSCKVALDSSGQSKGYGFVQFDNEESA KAIEKLNGM
Sbjct: 121 IKNLDKAIDHKALHDTFSAFGSILSCKVALDSSGQSKGYGFVQFDNEESAQKAIEKLNGM 180

Query: 181 LLNDKQVYVGPFLRKQERDGVVDKSKFNNVFVKNLSETTTEEDLNKAFSEFGTLTSIVVM 240
           LLNDKQVYVGPFLRKQERDGVVDKSKFNNVFVKNLSETTTEEDLNKAFSEFGTLTSIVVM
Sbjct: 181 LLNDKQVYVGPFLRKQERDGVVDKSKFNNVFVKNLSETTTEEDLNKAFSEFGTLTSIVVM 240

Query: 241 RDADGKSRCFGFVNFENADDAARAVDTLNGKLVDDKEWYVGKAQKKSEREVELKHRFEQT 300
           RDADGKSRCFGFVNFENADDAARAVD LNGKLVDDKEWYVGKAQKKSEREVELKHRFEQT
Sbjct: 241 RDADGKSRCFGFVNFENADDAARAVDALNGKLVDDKEWYVGKAQKKSEREVELKHRFEQT 300

Query: 301 MKEAADKYQGANLYIKNLDDSIGDDKLKELFAPFGTITSCKVMRDPNGISRGSGFVAFST 360
           MKEAADKYQGANLYIKNLDDSIGDDKLKELFAPFGTITSCKVMRDPNGISRGSGFVAFST
Sbjct: 301 MKEAADKYQGANLYIKNLDDSIGDDKLKELFAPFGTITSCKVMRDPNGISRGSGFVAFST 360

Query: 361 PDEASRALVEMNGKMVVSKPLYVALAQRKEDRRARLQ 397
           PDEASRALVEMNGKMVVSKPLYVALAQRKEDRRARLQ
Sbjct: 361 PDEASRALVEMNGKMVVSKPLYVALAQRKEDRRARLQ 397

[Close]
BLAST of Cucsat.G15556.T6 vs. ExPASy TrEMBL
Match: A0A1S3C385 (Polyadenylate-binding protein OS=Cucumis melo OX=3656 GN=LOC103496171 PE=3 SV=1)

HSP 1 Score: 772 bits (1993), Expect = 6.58e-277
Identity = 394/397 (99.24%), Postives = 394/397 (99.24%), Query Frame = 0 

Query: 1   MATQVQAQPQNAISGINPAANGGANFVTTSLYVGDLDLNVTDSQLYDIFNQVGQVVSVRV 60
           MA QVQAQPQNAISGINPAANGGANFVTTSLYVGDLDLNVTDSQLYDIFNQVGQVVSVRV
Sbjct: 1   MAAQVQAQPQNAISGINPAANGGANFVTTSLYVGDLDLNVTDSQLYDIFNQVGQVVSVRV 60

Query: 61  CRDLTTRRSLGYGYVNYSNPQDAARALDVLNFTPLNGKPIRVMYSHRDPSIRKSGAGNIF 120
           CRDLTTRRSLGYGYVNYSNPQDAARALDVLNFTPLNGKPIRVMYSHRDPSIRKSGAGNIF
Sbjct: 61  CRDLTTRRSLGYGYVNYSNPQDAARALDVLNFTPLNGKPIRVMYSHRDPSIRKSGAGNIF 120

Query: 121 IKNLDKAIDHKALHDTFSAFGSILSCKVALDSSGQSKGYGFVQFDNEESALKAIEKLNGM 180
           IKNLDKAIDHKALHDTFSAFGSILSCKVALDSSGQSKGYGFVQFDNEESA KAIEKLNGM
Sbjct: 121 IKNLDKAIDHKALHDTFSAFGSILSCKVALDSSGQSKGYGFVQFDNEESAQKAIEKLNGM 180

Query: 181 LLNDKQVYVGPFLRKQERDGVVDKSKFNNVFVKNLSETTTEEDLNKAFSEFGTLTSIVVM 240
           LLNDKQVYVGPFLRKQERDGVVDKSKFNNVFVKNLSETTTEEDLNKAFSEFGTLTSIVVM
Sbjct: 181 LLNDKQVYVGPFLRKQERDGVVDKSKFNNVFVKNLSETTTEEDLNKAFSEFGTLTSIVVM 240

Query: 241 RDADGKSRCFGFVNFENADDAARAVDTLNGKLVDDKEWYVGKAQKKSEREVELKHRFEQT 300
           RDADGKSRCFGFVNFENADDAARAVD LNGKLVDDKEWYVGKAQKKSEREVELKHRFEQT
Sbjct: 241 RDADGKSRCFGFVNFENADDAARAVDALNGKLVDDKEWYVGKAQKKSEREVELKHRFEQT 300

Query: 301 MKEAADKYQGANLYIKNLDDSIGDDKLKELFAPFGTITSCKVMRDPNGISRGSGFVAFST 360
           MKEAADKYQGANLYIKNLDDSIGDDKLKELFAPFGTITSCKVMRDPNGISRGSGFVAFST
Sbjct: 301 MKEAADKYQGANLYIKNLDDSIGDDKLKELFAPFGTITSCKVMRDPNGISRGSGFVAFST 360

Query: 361 PDEASRALVEMNGKMVVSKPLYVALAQRKEDRRARLQ 397
           PDEASRALVEMNGKMVVSKPLYVALAQRKEDRRARLQ
Sbjct: 361 PDEASRALVEMNGKMVVSKPLYVALAQRKEDRRARLQ 397

[Close]
BLAST of Cucsat.G15556.T6 vs. ExPASy TrEMBL
Match: A0A5A7T6F2 (Polyadenylate-binding protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold379G00430 PE=3 SV=1)

HSP 1 Score: 767 bits (1981), Expect = 4.56e-275
Identity = 394/398 (98.99%), Postives = 394/398 (98.99%), Query Frame = 0 

Query: 1   MATQVQAQPQNAISGINPAANGGANFVTTSLYVGDLDLNVTDSQLYDIFNQVGQVVSVRV 60
           MA QVQAQPQNAISGINPAANGGANFVTTSLYVGDLDLNVTDSQLYDIFNQVGQVVSVRV
Sbjct: 1   MAAQVQAQPQNAISGINPAANGGANFVTTSLYVGDLDLNVTDSQLYDIFNQVGQVVSVRV 60

Query: 61  CRDLTTRRSLGYGYVNYSNPQDAARALDVLNFTPLNGKPIRVMYSHRDPSIRKSGAGNIF 120
           CRDLTTRRSLGYGYVNYSNPQDAARALDVLNFTPLNGKPIRVMYSHRDPSIRKSGAGNIF
Sbjct: 61  CRDLTTRRSLGYGYVNYSNPQDAARALDVLNFTPLNGKPIRVMYSHRDPSIRKSGAGNIF 120

Query: 121 IKNLDKAIDHKALHDTFSAFGSILSCKVALDSSGQSKGYGFVQFDNEESALKAIEKLNGM 180
           IKNLDKAIDHKALHDTFSAFGSILSCKVALDSSGQSKGYGFVQFDNEESA KAIEKLNGM
Sbjct: 121 IKNLDKAIDHKALHDTFSAFGSILSCKVALDSSGQSKGYGFVQFDNEESAQKAIEKLNGM 180

Query: 181 LLNDKQVYVGPFLRKQERDGVVDKSKFNNVFVKNLSETTTEEDLNKAFSEFGTLTSIVVM 240
           LLNDKQVYVGPFLRKQERDGVVDKSKFNNVFVKNLSETTTEEDLNKAFSEFGTLTSIVVM
Sbjct: 181 LLNDKQVYVGPFLRKQERDGVVDKSKFNNVFVKNLSETTTEEDLNKAFSEFGTLTSIVVM 240

Query: 241 RDADGKSRCFGFVNFENADDAARAVDTLNGKLVDDKEWYVGKAQKKSEREVELKHRFEQT 300
           RDADGKSRCFGFVNFENADDAARAVD LNGKLVDDKEWYVGKAQKKSEREVELKHRFEQT
Sbjct: 241 RDADGKSRCFGFVNFENADDAARAVDALNGKLVDDKEWYVGKAQKKSEREVELKHRFEQT 300

Query: 301 MKEAADKYQGANLYIKNLDDSIGDDKLKELFAPFGTITSCKV-MRDPNGISRGSGFVAFS 360
           MKEAADKYQGANLYIKNLDDSIGDDKLKELFAPFGTITSCKV MRDPNGISRGSGFVAFS
Sbjct: 301 MKEAADKYQGANLYIKNLDDSIGDDKLKELFAPFGTITSCKVVMRDPNGISRGSGFVAFS 360

Query: 361 TPDEASRALVEMNGKMVVSKPLYVALAQRKEDRRARLQ 397
           TPDEASRALVEMNGKMVVSKPLYVALAQRKEDRRARLQ
Sbjct: 361 TPDEASRALVEMNGKMVVSKPLYVALAQRKEDRRARLQ 398

[Close]
BLAST of Cucsat.G15556.T6 vs. ExPASy TrEMBL
Match: A0A6J1D4X6 (Polyadenylate-binding protein OS=Momordica charantia OX=3673 GN=LOC111017639 PE=3 SV=1)

HSP 1 Score: 746 bits (1925), Expect = 1.44e-266
Identity = 380/398 (95.48%), Postives = 388/398 (97.49%), Query Frame = 0 

Query: 1   MATQVQAQPQNAISGINPAANGGAN-FVTTSLYVGDLDLNVTDSQLYDIFNQVGQVVSVR 60
           MA QVQAQPQNAISGINPAANGGAN FVTTSLYVGDLDLNVTDSQLYDIFNQVGQVVSVR
Sbjct: 1   MAAQVQAQPQNAISGINPAANGGANQFVTTSLYVGDLDLNVTDSQLYDIFNQVGQVVSVR 60

Query: 61  VCRDLTTRRSLGYGYVNYSNPQDAARALDVLNFTPLNGKPIRVMYSHRDPSIRKSGAGNI 120
           VCRDLTTRRSLGYGYVNYSNPQDAARALDVLNFTPLNGKPIRVMYSHRDPSIRKSGAGNI
Sbjct: 61  VCRDLTTRRSLGYGYVNYSNPQDAARALDVLNFTPLNGKPIRVMYSHRDPSIRKSGAGNI 120

Query: 121 FIKNLDKAIDHKALHDTFSAFGSILSCKVALDSSGQSKGYGFVQFDNEESALKAIEKLNG 180
           FIKNLDKAIDHKALHDTFSAFGSILSCKVALDSSGQSKGYGFVQFDNE+SA KAIEKLNG
Sbjct: 121 FIKNLDKAIDHKALHDTFSAFGSILSCKVALDSSGQSKGYGFVQFDNEDSAQKAIEKLNG 180

Query: 181 MLLNDKQVYVGPFLRKQERDGVVDKSKFNNVFVKNLSETTTEEDLNKAFSEFGTLTSIVV 240
           MLLNDKQVYVGPFLRKQERDG  DKSKFNNVFVK+LSETTTEEDLNK FSEFGT+TSIVV
Sbjct: 181 MLLNDKQVYVGPFLRKQERDGAADKSKFNNVFVKSLSETTTEEDLNKVFSEFGTITSIVV 240

Query: 241 MRDADGKSRCFGFVNFENADDAARAVDTLNGKLVDDKEWYVGKAQKKSEREVELKHRFEQ 300
           MRDADGKS+CFGFVNFEN DDAARAVD LNGK+ +DKEWYVGKAQKKSEREVELKHRFEQ
Sbjct: 241 MRDADGKSKCFGFVNFENVDDAARAVDALNGKVFEDKEWYVGKAQKKSEREVELKHRFEQ 300

Query: 301 TMKEAADKYQGANLYIKNLDDSIGDDKLKELFAPFGTITSCKVMRDPNGISRGSGFVAFS 360
           TMKEAADKYQGANLYIKNLDDSIGDDKLKELFA FGTITSCKVMRDPNGISRGSGFVAFS
Sbjct: 301 TMKEAADKYQGANLYIKNLDDSIGDDKLKELFASFGTITSCKVMRDPNGISRGSGFVAFS 360

Query: 361 TPDEASRALVEMNGKMVVSKPLYVALAQRKEDRRARLQ 397
           TP+EASRAL+EMNGKMVVSKPLYVALAQRKEDRRARLQ
Sbjct: 361 TPEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQ 398

The following BLAST results are available for this feature:
BLAST of Cucsat.G15556.T6 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
P427311.8e-16872.50Polyadenylate-binding protein 2 OS=Arabidopsis thaliana OX=3702 GN=PAB2 PE=1 SV=... [more]
Q9FXA23.9e-16874.68Polyadenylate-binding protein 8 OS=Arabidopsis thaliana OX=3702 GN=PAB8 PE=1 SV=... [more]
O221738.2e-15067.10Polyadenylate-binding protein 4 OS=Arabidopsis thaliana OX=3702 GN=PAB4 PE=1 SV=... [more]
O643801.6e-12959.80Polyadenylate-binding protein 3 OS=Arabidopsis thaliana OX=3702 GN=PAB3 PE=2 SV=... [more]
Q051961.0e-12357.40Polyadenylate-binding protein 5 OS=Arabidopsis thaliana OX=3702 GN=PAB5 PE=1 SV=... [more]
BLAST of Cucsat.G15556.T6 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_004140705.15.01e-279100.00polyadenylate-binding protein 8 [Cucumis sativus] >KGN57514.1 hypothetical prote... [more]
XP_008456142.11.36e-27699.24PREDICTED: polyadenylate-binding protein 2-like isoform X1 [Cucumis melo] >TYK13... [more]
XP_038892025.11.07e-27598.49polyadenylate-binding protein 2-like [Benincasa hispida][more]
KAA0037137.19.41e-27598.99polyadenylate-binding protein 2-like isoform X1 [Cucumis melo var. makuwa][more]
KAG7014972.11.24e-27095.48Polyadenylate-binding protein 2, partial [Cucurbita argyrosperma subsp. argyrosp... [more]
BLAST of Cucsat.G15556.T6 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L9892.43e-279100.00Polyadenylate-binding protein OS=Cucumis sativus OX=3659 GN=Csa_3G202720 PE=3 SV... [more]
A0A5D3CRX06.58e-27799.24Polyadenylate-binding protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sc... [more]
A0A1S3C3856.58e-27799.24Polyadenylate-binding protein OS=Cucumis melo OX=3656 GN=LOC103496171 PE=3 SV=1[more]
A0A5A7T6F24.56e-27598.99Polyadenylate-binding protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sc... [more]
A0A6J1D4X61.44e-26695.48Polyadenylate-binding protein OS=Momordica charantia OX=3673 GN=LOC111017639 PE=... [more]
InterPro
Analysis Name: InterPro Annotations of Cucumber (B10) v3
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 30..103
e-value: 4.2E-24
score: 96.1
coord: 312..384
e-value: 1.2E-24
score: 97.8
coord: 209..281
e-value: 7.1E-28
score: 108.6
coord: 118..190
e-value: 1.3E-24
score: 97.8
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 119..187
e-value: 4.2E-21
score: 74.6
coord: 210..278
e-value: 2.0E-23
score: 82.0
coord: 313..381
e-value: 1.7E-18
score: 66.2
coord: 31..101
e-value: 8.3E-19
score: 67.2
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 117..189
score: 18.359171
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 208..285
score: 19.297218
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 311..388
score: 18.887888
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 29..107
score: 18.73439
IPR003954RNA recognition motif domain, eukaryoteSMARTSM00361rrm2_1coord: 30..103
e-value: 4.4
score: 7.5
coord: 312..384
e-value: 2.6
score: 9.9
coord: 118..190
e-value: 2.1
score: 10.9
coord: 209..281
e-value: 0.9
score: 14.6
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 296..396
e-value: 2.9E-27
score: 96.9
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 118..198
e-value: 6.7E-24
score: 85.6
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 199..295
e-value: 3.4E-27
score: 97.1
coord: 1..117
e-value: 4.9E-26
score: 93.3
IPR006515Polyadenylate binding protein, human types 1, 2, 3, 4TIGRFAMTIGR01628TIGR01628coord: 30..398
e-value: 6.7E-181
score: 601.4
NoneNo IPR availablePANTHERPTHR24012RNA BINDING PROTEINcoord: 20..398
NoneNo IPR availablePANTHERPTHR24012:SF839POLYADENYLATE-BINDING PROTEIN 2coord: 20..398
NoneNo IPR availableCDDcd12380RRM3_I_PABPscoord: 207..286
e-value: 2.2796E-38
score: 131.542
NoneNo IPR availableCDDcd12381RRM4_I_PABPscoord: 310..388
e-value: 2.32352E-49
score: 160.092
NoneNo IPR availableCDDcd12378RRM1_I_PABPscoord: 30..109
e-value: 7.09217E-47
score: 153.844
NoneNo IPR availableCDDcd12379RRM2_I_PABPscoord: 115..191
e-value: 4.69158E-49
score: 159.254
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 208..392
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 29..198

Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Cucsat.G15556Cucsat.G15556gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Cucsat.G15556.T6.E1Cucsat.G15556.T6.E1exon
Cucsat.G15556.T6.E2Cucsat.G15556.T6.E2exon
Cucsat.G15556.T6.E3Cucsat.G15556.T6.E3exon
Cucsat.G15556.T6.E4Cucsat.G15556.T6.E4exon
Cucsat.G15556.T6.E5Cucsat.G15556.T6.E5exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Cucsat.G15556.T6.C1Cucsat.G15556.T6.C1CDS
Cucsat.G15556.T6.C2Cucsat.G15556.T6.C2CDS
Cucsat.G15556.T6.C3Cucsat.G15556.T6.C3CDS
Cucsat.G15556.T6.C4Cucsat.G15556.T6.C4CDS
Cucsat.G15556.T6.C5Cucsat.G15556.T6.C5CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Cucsat.G15556.T6Cucsat.G15556.T6-proteinpolypeptide


GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0005829 cytosol
cellular_component GO:0005634 nucleus
cellular_component GO:1990904 ribonucleoprotein complex
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0003723 RNA binding
molecular_function GO:0003730 mRNA 3'-UTR binding
molecular_function GO:0008143 poly(A) binding
molecular_function GO:0008266 poly(U) RNA binding