Cucsat.G15341.T9 (mRNA) Cucumber (B10) v3

Overview
NameCucsat.G15341.T9
TypemRNA
OrganismCucumis sativus L. var. sativus cv B10 (Cucumber (B10) v3)
Descriptionprotein CHROMATIN REMODELING 25
Locationctg2009: 1521253 .. 1525512 (-)
RNA-Seq ExpressionCucsat.G15341.T9
SyntenyCucsat.G15341.T9
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
CTTTTTGGTGTTTTGTAGTCTTTAATGTGTTATTTTGCGGTAATTAAATTATCTTCCCATCAATAAAACTAAACTCCTTTAATTAAATTATCTTCCCATCAATAAAACTAAATTCCTTTCTTAGGGGACTAATGTAACTTTCATGTATTAGACGCTAGATTTGTTTGCTCAACTGTGTCGTGAAAGGAGGTACCCGTATTTAAGGCTTGATGGAACCACATCAATAAGTAAAAGACAAAAGTTAGTCAACCGTTTTAATGATCTGTCAAAGGTATGCAGCCTTTATAAGATTCGATTTGGTTTTATTTTTCTATTCCTTTAGTGCAATCTGGACGTATAAATTGCTTCCTGCTTATTAGACTTTCAAGGAAGTCTATGTGGGGATAATATAGTGCTAAAGCACCGTTTTATCAATACTTCGCAGGATGAGTTTGTTTTTCTATTGAGCAGCAAGGCTGGTGGATGTGGTCTGAATTTGATTGGTGGAAATCGTTTAGTTCTGTTTGATCCTGACTGGAACCCTGCGAATGATAAGCAAGTAAACCTACCGCTGTGTGGAACCCCTGGTTTGGACTCATTGAATTCTAGAATATGAATATGCAGTCTGCCTTCTGATGTTTTCCTTGTTTTCATCTGTCTTACCATACGTGAATAGGCTGCTGCAAGAGTGTGGAGGGACGGACAAAAGAAGAGAGTATTCATCTACAGATTTTTAAGTACCGGAACGATTGAAGAAAAGGTTTGAACTCATTGTAAATAAGGCTAAAATAATCACCCTCTTCACGTTCATGTTTTTATGATATATATATATGTTGTCAATATAGTTAGAATTCTTTTCTCATATATCCTAGTGTTATATAGGTGTACCAGCGACAAATGTCAAAAGAAGGGTTACAAAAAGTTATTCAGCAGGAGTCAACAAATAACCTTACGACCCAGGTTTAAAATTGCTTACTTTTCGATATTGATTTGGAAATACTTAGCAACATTAAATCAAACTTGGAATCTAGAAAGGTTATTTGAAGGTCCCTTTTCTCCCTTCATTTTTCAGGTGAACTTCCTTTCATCTGAGGATTTACGCGATTTATTCTCATTTCATGATAACGTCAGGTAAAACACTTGCTATGATTTATTTGCTCAAGATGTGTGACATTATCTTACAATTTTTTTAATAAAAGTCAGAAATAGTATATTATGCATTTTACATAGGAAGCCTGTATTTCATGGCGAATCGTGCAACCTATTTCACTAGGATAGAGTGGAGGAAGTTAATTCATATAAATACTGTGTACAAGAAATAAAAATTTTAGGCCATTTGATAATAATGTCCTTTTTAGTTATGTTCTTGAAAATTAGGTGGTCTTCTTCTCAACTTTTTTTCAATAGTTTTTCATCTCTAGAAAGAAACATTTGGATTATTAGCCACACTTAAAAAATAAGAACAAAAATTTAAAAGTTAAAGCTTATAATCACTCTCACATATATAATTGGTTTTCATAACCATCCTGGCTTGGCGTAGTGCTAAATAAAGAAGACATAGTCTCAATAACTAAGAGGTCGTGGATTTAATTTATACTGGCCACCTACATAGGAATTAATTTCTTTCGAGTTATGTTGACACCCAAATGCTATAGGGTCAGATGGGTGGCCGTAATACTCACGATATAGTATATATATATAATTGTTTGTCTTTTGTCTTTTGTTTTTTAAAATTAAGCCTACAAACTTTTATCTATAACTTTCTTGCCTTGTTACCTACTTTTAAAAATTGTTTTAGAAAACCAAATTAAATTTTAGAAACTAAAAAACAGTAGTTTAAACTTGACTTTGTTCTTGAAGTCTTAGAATTTAAATGTGTTTTTAAGGAGTGTGAAAAACTTAACTAACAAATGATGAGGACACAATCGTACATTTCAAAAATACAAACTAAAAACAACAATAGTTATCAATGGGAGCTTTGTTTTTCAAAAACTTAATTTTGTTTTTAGAATTTTACTAAGAACTCAAACCTTTAAAAAGGAGAAAAATCATAATAACAGAATTGGAAAAACAAATTCAAAAATAGAAAACTAAAAGCAAAATAGCTATTGAAGTCTACCTTTTAAGTTTTTACTTGACTTGGATTTTGAAAGAACTATTATAAAGTTGGAAAAGAAATCATCTATCGTAGGTTGATTTTGAAAAACCAAATACTTAGACCTAATTAATGAGGTGCAAGCATACTTTTTTTTTTCTAGGGTTAAGTAGCCACCAGTCTCTGACCGTTGATCAAACAGCTTGTCCTGTGATCTAAAAAAGGATTGTTTTGGTTTCCTATGCCTGACTTTTTTTTTCTTTCGCTACTTATTTATTTATATATATATATATTTTTTTTAAGTGTTGGGTATATTTTCTCAATTTAACTGTAAGTTAACAAATCCAATGTTGTTTTCCTTTACCTGAGACATCAACAAACTAAGATCTTTATTTAACAAACCCCATAAAAGTTCCTTTCTTCCCCTAATACACGAATTAGAAATTTATCACCCACAAAAACAAACAAATCAAAGGACATAAATTTTTGCAAACATAACCGGGATTTACAAATATAACAGCATGAAGAAGTTTGTCATTTTGAATACACAGGTCTGAAATCCATGAAAAGATGAATTGCAGTCGGTGCCAAAATTGTTATGGTAGGCCCGAGGACATGGACGAAAACCTGTCTACAAACGGACCTTGTCAGTCTGACCAAGTAACTTCTGACATTGGCGGATTTGCACAACTTGCTGGATGCTTAGACAAGTTAAAGAAATCAGAGCAACAGGTTGGTCACTTCTACAATTAACGGGAGGATAGAATTTCTTCTAGTTGCCTTATTTATCCACATATGCTCTTCAAAATTTTCAGGTGGGGTCTCCGCTAGAAGAAGATTTAGGCAACTGGGGGCATCATTTTGACTCTACTACCGTACCTGATACCATTTTACAAGCTTCTGCTGGTGATGAGGTTTGATCTTTAATTCTTTCATATATTGTTAAATGGCTAAATTATAGAAAATGCCTTTGAACTTTGTATTTTGGGTAATACCCCTAAATTTTCAAAGTCTCGACAGCACCCTTCGATTTTAAAAAACAATTAATCTTGTATTTTGTTTCAAAAATACCGTCGGTATTTAAACGACAATCTTTTTGACACAATACAAAATTTTAATTTTTTGTTTTGCTTTAAAAAAAATCCTTACACTTTCAAAAATTGGATAAAAACTTATAAATTTTTCGTTTAAAAAATGTCCTTTCAACTTTCACAAGTTGCATTAATAACAATTTATTTGAAGCTAACATGAGTTTGAAAACGATCCATTGTAAAACAATTTTCTTTCCACATAGATACTCGTATCTTTTTTCCATTTGTCCAATTTGTTCAGCAAAAATGTATAAACCAAAATTTTAAGCAGCATAAATTTCTATAAAATCTCACAAATTCTCAAAATTAAAATTCTCCTTAAAAACTCATCAAAACTATAAATACACAAATACAAAAAGGATAGTATTTGGTTATTAAAACCCTCAACTAATAACGTACAACCAATCTACTGTTCCTGAGTGGTTTCATATCTTTCTTCTAGTTATAATCTATATGCTTTAATCAAATGGTTTATTTATTTATATTTATTTTAAAAATAAAGAATCACTTTCTGTTATCTCATGATTTACTTGTGTTTGTTTCAGGTTACCTTTGTTTTCTCAAATCAAGTTGATGGAAAGCTTGTACCCGTCGAATCGATGAGTAGTCCGAGGATGAAAGATGCAGAGGGAAATGGGAACAACTCCAGATTGAACCAAAACTCAAGACAGAAACCATTTTTACTATCTCAACATAGAAAACCTTTACAATCCATTACTTCTAATGAAGATCCCAACAAAGGTACATTAAAATTTACATCCACTGTCTTTCAAAGCGAAACCATGAAGCCTGTTAGAACTTCAGTTGAAGGTTCAATGCATGTAACATTGAAGCACAAACACTCTCTTGGAAATTACTTACCACAGAAAAGAATGTCTGATGTTTCGGAATGTGATGATTTCGAGTAAAGTTTAAACGTCAATTAATAGCTAATGATGGTAACTGTGGGAGGTTGGTTGATTTGATCTTGCATATTTCAGTTACTTGAGATTTCTGATCTGATGTTTTGTTAGGCACATTGATGGTAAAATGAATATTATAAACTGAAATATTTTTTAAGATTATTGTAATGATAAAAGAGTTGAGATTTTGACT

Coding sequence (CDS)

ATGTCAAAAGAAGGGTTACAAAAAGTTATTCAGCAGGAGTCAACAAATAACCTTACGACCCAGGTGAACTTCCTTTCATCTGAGGATTTACGCGATTTATTCTCATTTCATGATAACGTCAGGTCTGAAATCCATGAAAAGATGAATTGCAGTCGGTGCCAAAATTGTTATGGTAGGCCCGAGGACATGGACGAAAACCTGTCTACAAACGGACCTTGTCAGTCTGACCAAGTAACTTCTGACATTGGCGGATTTGCACAACTTGCTGGATGCTTAGACAAGTTAAAGAAATCAGAGCAACAGGTGGGGTCTCCGCTAGAAGAAGATTTAGGCAACTGGGGGCATCATTTTGACTCTACTACCGTACCTGATACCATTTTACAAGCTTCTGCTGGTGATGAGGTTACCTTTGTTTTCTCAAATCAAGTTGATGGAAAGCTTGTACCCGTCGAATCGATGAGTAGTCCGAGGATGAAAGATGCAGAGGGAAATGGGAACAACTCCAGATTGAACCAAAACTCAAGACAGAAACCATTTTTACTATCTCAACATAGAAAACCTTTACAATCCATTACTTCTAATGAAGATCCCAACAAAGGTACATTAAAATTTACATCCACTGTCTTTCAAAGCGAAACCATGAAGCCTGTTAGAACTTCAGTTGAAGGTTCAATGCATGTAACATTGAAGCACAAACACTCTCTTGGAAATTACTTACCACAGAAAAGAATGTCTGATGTTTCGGAATGTGATGATTTCGAGTAA

Protein sequence

MSKEGLQKVIQQESTNNLTTQVNFLSSEDLRDLFSFHDNVRSEIHEKMNCSRCQNCYGRPEDMDENLSTNGPCQSDQVTSDIGGFAQLAGCLDKLKKSEQQVGSPLEEDLGNWGHHFDSTTVPDTILQASAGDEVTFVFSNQVDGKLVPVESMSSPRMKDAEGNGNNSRLNQNSRQKPFLLSQHRKPLQSITSNEDPNKGTLKFTSTVFQSETMKPVRTSVEGSMHVTLKHKHSLGNYLPQKRMSDVSECDDFE
Homology
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BLAST of Cucsat.G15341.T9 vs. ExPASy Swiss-Prot
Match: Q0PCS3 (Protein CHROMATIN REMODELING 25 OS=Arabidopsis thaliana OX=3702 GN=CHR25 PE=1 SV=1)

HSP 1 Score: 223.8 bits (569), Expect = 2.2e-57
Identity = 121/198 (61.11%), Postives = 147/198 (74.24%), Query Frame = 0 

Query: 1   MSKEGLQKVIQQESTNNLTTQVNFLSSEDLRDLFSFHDNVRSEIHEKMNCSRCQNCYGRP 60
           MSKEGLQKVIQ E T+N T Q N LS+EDLRDLFSFH +VRSEIHEKM+CSRCQN     
Sbjct: 674 MSKEGLQKVIQHEQTDNSTRQGNLLSTEDLRDLFSFHGDVRSEIHEKMSCSRCQNDASGT 733

Query: 61  EDMDENLSTN---GPCQSDQVTSDIGGFAQLAGCLDKLKKSEQQVGSPLEEDLGNWGHHF 120
           E+++E    N     CQ DQ   DIGGFA+ AGC + LK SE+QVG+PLEEDLG+WGHHF
Sbjct: 734 ENIEEGNENNVDDNACQIDQ--EDIGGFAKDAGCFNLLKNSERQVGTPLEEDLGSWGHHF 793

Query: 121 DSTTVPDTILQASAGDEVTFVFSNQVDGKLVPVESMSSPRMKDAEGNGNNSRLNQNSRQK 180
            S +VPD ILQASAGDEVTFVF+NQVDGKLVP+ES  SP+  ++E +  N  +N+ +  K
Sbjct: 794 TSKSVPDAILQASAGDEVTFVFTNQVDGKLVPIESNVSPKTVESEEHNRNQPVNKRAFNK 853

Query: 181 PFLLSQHRKPLQSITSNE 196
           P    + R+PLQ ++ NE
Sbjct: 854 P--QQRPREPLQPLSLNE 867

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BLAST of Cucsat.G15341.T9 vs. ExPASy Swiss-Prot
Match: A4PBL4 (DNA repair and recombination protein RAD54 OS=Oryza sativa subsp. japonica OX=39947 GN=RAD54 PE=1 SV=1)

HSP 1 Score: 173.7 bits (439), Expect = 2.6e-42
Identity = 89/158 (56.33%), Postives = 113/158 (71.52%), Query Frame = 0 

Query: 1   MSKEGLQKVIQQESTNNLTTQVNFLSSEDLRDLFSFHDNVRSEIHEKMNCSRC--QNCYG 60
           MSKEGLQKVIQQE  +    Q + LS+EDLRDLF+FH+ +RSEIHE + C+RC    C  
Sbjct: 729 MSKEGLQKVIQQEQADG-KMQGSSLSTEDLRDLFTFHEQIRSEIHENLKCNRCNKDGCMV 788

Query: 61  RPEDMDENLSTNGPCQSDQVTS--DIGGFAQLAGCLDKLKKSEQQVGSPLEEDLGNWGHH 120
                 ++ +T     +    S  DIGGF  ++GC+ K+  S QQ+GSP EEDLG+WGHH
Sbjct: 789 LDGSKFDSAATEHEASNSGENSYIDIGGFGAISGCVQKMNSSNQQIGSPSEEDLGSWGHH 848

Query: 121 FDSTTVPDTILQASAGDEVTFVFSNQVDGKLVPVESMS 155
            D +TVPDTILQ S+GDEV+FVF+NQ+DGKLVPVESM+
Sbjct: 849 SDPSTVPDTILQCSSGDEVSFVFTNQIDGKLVPVESMA 885

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BLAST of Cucsat.G15341.T9 vs. ExPASy Swiss-Prot
Match: B3MMA5 (DNA repair and recombination protein RAD54-like OS=Drosophila ananassae OX=7217 GN=okr PE=3 SV=1)

HSP 1 Score: 48.1 bits (113), Expect = 1.7e-04
Identity = 47/183 (25.68%), Postives = 74/183 (40.44%), Query Frame = 0 

Query: 16  NNLTTQVNFLSSEDLRDLFSFHDNVRSEIHEKMNCSRCQNCYGRPEDMDENLSTNGPCQS 75
           NN +++ +F + +DL+DLFSF   + S+ HEK+ C RC           +N+ T  P +S
Sbjct: 654 NNESSEKHF-TRDDLKDLFSFDQKILSDTHEKLKCKRCV----------QNIQTKPPSES 713

Query: 76  DQVTSDIGGFAQLAGCLDKLKKSEQQVGSPLEEDLGNWGHHFDSTTVPDTILQASAGDE- 135
              TS                             L  W H  ++  +PD+IL  +  D  
Sbjct: 714 TDCTS----------------------------HLSQWYHCSNNRGLPDSILAQAWTDSK 773

Query: 136 -VTFVFSNQVDGKLVPVESMSSPRMKDAEGNGNNSRLNQNSRQKPFLLSQHRKPLQSITS 195
            V+FVF ++   K    E + SP    AE            R++P        PL   ++
Sbjct: 774 CVSFVFHHRSQAK----EVVESPESAAAEAESVEEESQPTQRKRP------SPPLSDDSA 787

Query: 196 NED 197
           +ED
Sbjct: 834 DED 787

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BLAST of Cucsat.G15341.T9 vs. NCBI nr
Match: KGN57560.2 (hypothetical protein Csa_010402 [Cucumis sativus])

HSP 1 Score: 514 bits (1325), Expect = 1.62e-174
Identity = 254/254 (100.00%), Postives = 254/254 (100.00%), Query Frame = 0 

Query: 1   MSKEGLQKVIQQESTNNLTTQVNFLSSEDLRDLFSFHDNVRSEIHEKMNCSRCQNCYGRP 60
           MSKEGLQKVIQQESTNNLTTQVNFLSSEDLRDLFSFHDNVRSEIHEKMNCSRCQNCYGRP
Sbjct: 673 MSKEGLQKVIQQESTNNLTTQVNFLSSEDLRDLFSFHDNVRSEIHEKMNCSRCQNCYGRP 732

Query: 61  EDMDENLSTNGPCQSDQVTSDIGGFAQLAGCLDKLKKSEQQVGSPLEEDLGNWGHHFDST 120
           EDMDENLSTNGPCQSDQVTSDIGGFAQLAGCLDKLKKSEQQVGSPLEEDLGNWGHHFDST
Sbjct: 733 EDMDENLSTNGPCQSDQVTSDIGGFAQLAGCLDKLKKSEQQVGSPLEEDLGNWGHHFDST 792

Query: 121 TVPDTILQASAGDEVTFVFSNQVDGKLVPVESMSSPRMKDAEGNGNNSRLNQNSRQKPFL 180
           TVPDTILQASAGDEVTFVFSNQVDGKLVPVESMSSPRMKDAEGNGNNSRLNQNSRQKPFL
Sbjct: 793 TVPDTILQASAGDEVTFVFSNQVDGKLVPVESMSSPRMKDAEGNGNNSRLNQNSRQKPFL 852

Query: 181 LSQHRKPLQSITSNEDPNKGTLKFTSTVFQSETMKPVRTSVEGSMHVTLKHKHSLGNYLP 240
           LSQHRKPLQSITSNEDPNKGTLKFTSTVFQSETMKPVRTSVEGSMHVTLKHKHSLGNYLP
Sbjct: 853 LSQHRKPLQSITSNEDPNKGTLKFTSTVFQSETMKPVRTSVEGSMHVTLKHKHSLGNYLP 912

Query: 241 QKRMSDVSECDDFE 254
           QKRMSDVSECDDFE
Sbjct: 913 QKRMSDVSECDDFE 926

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BLAST of Cucsat.G15341.T9 vs. NCBI nr
Match: XP_031737571.1 (protein CHROMATIN REMODELING 25 [Cucumis sativus])

HSP 1 Score: 514 bits (1325), Expect = 1.76e-174
Identity = 254/254 (100.00%), Postives = 254/254 (100.00%), Query Frame = 0 

Query: 1   MSKEGLQKVIQQESTNNLTTQVNFLSSEDLRDLFSFHDNVRSEIHEKMNCSRCQNCYGRP 60
           MSKEGLQKVIQQESTNNLTTQVNFLSSEDLRDLFSFHDNVRSEIHEKMNCSRCQNCYGRP
Sbjct: 676 MSKEGLQKVIQQESTNNLTTQVNFLSSEDLRDLFSFHDNVRSEIHEKMNCSRCQNCYGRP 735

Query: 61  EDMDENLSTNGPCQSDQVTSDIGGFAQLAGCLDKLKKSEQQVGSPLEEDLGNWGHHFDST 120
           EDMDENLSTNGPCQSDQVTSDIGGFAQLAGCLDKLKKSEQQVGSPLEEDLGNWGHHFDST
Sbjct: 736 EDMDENLSTNGPCQSDQVTSDIGGFAQLAGCLDKLKKSEQQVGSPLEEDLGNWGHHFDST 795

Query: 121 TVPDTILQASAGDEVTFVFSNQVDGKLVPVESMSSPRMKDAEGNGNNSRLNQNSRQKPFL 180
           TVPDTILQASAGDEVTFVFSNQVDGKLVPVESMSSPRMKDAEGNGNNSRLNQNSRQKPFL
Sbjct: 796 TVPDTILQASAGDEVTFVFSNQVDGKLVPVESMSSPRMKDAEGNGNNSRLNQNSRQKPFL 855

Query: 181 LSQHRKPLQSITSNEDPNKGTLKFTSTVFQSETMKPVRTSVEGSMHVTLKHKHSLGNYLP 240
           LSQHRKPLQSITSNEDPNKGTLKFTSTVFQSETMKPVRTSVEGSMHVTLKHKHSLGNYLP
Sbjct: 856 LSQHRKPLQSITSNEDPNKGTLKFTSTVFQSETMKPVRTSVEGSMHVTLKHKHSLGNYLP 915

Query: 241 QKRMSDVSECDDFE 254
           QKRMSDVSECDDFE
Sbjct: 916 QKRMSDVSECDDFE 929

[Close]
BLAST of Cucsat.G15341.T9 vs. NCBI nr
Match: XP_008456127.1 (PREDICTED: protein CHROMATIN REMODELING 25 isoform X1 [Cucumis melo] >KAA0037102.1 protein CHROMATIN REMODELING 25 isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 490 bits (1261), Expect = 7.00e-165
Identity = 240/254 (94.49%), Postives = 248/254 (97.64%), Query Frame = 0 

Query: 1   MSKEGLQKVIQQESTNNLTTQVNFLSSEDLRDLFSFHDNVRSEIHEKMNCSRCQNCYGRP 60
           MSKEGLQKVIQQESTNNLTTQVNFLSSEDLRDLFSFHDNVRSEIHEKMNC+RCQNCYGRP
Sbjct: 675 MSKEGLQKVIQQESTNNLTTQVNFLSSEDLRDLFSFHDNVRSEIHEKMNCNRCQNCYGRP 734

Query: 61  EDMDENLSTNGPCQSDQVTSDIGGFAQLAGCLDKLKKSEQQVGSPLEEDLGNWGHHFDST 120
           EDMDE+LSTNG CQSDQVTSDIGGFAQLAGCLDKLKKSEQQVGSPLEEDL NWGHHFDST
Sbjct: 735 EDMDEDLSTNGACQSDQVTSDIGGFAQLAGCLDKLKKSEQQVGSPLEEDLANWGHHFDST 794

Query: 121 TVPDTILQASAGDEVTFVFSNQVDGKLVPVESMSSPRMKDAEGNGNNSRLNQNSRQKPFL 180
           TVPDTILQASAGDEVTF+FSNQVDGKLVPVESM+SPR+K+AEGNGNNS LNQN+RQKPFL
Sbjct: 795 TVPDTILQASAGDEVTFIFSNQVDGKLVPVESMTSPRVKEAEGNGNNSGLNQNTRQKPFL 854

Query: 181 LSQHRKPLQSITSNEDPNKGTLKFTSTVFQSETMKPVRTSVEGSMHVTLKHKHSLGNYLP 240
           LSQHRKPLQS+TSNEDPNKGTLKFTS VFQ ETMKPVRTSVEGSMHVTLKHKHSLGNYLP
Sbjct: 855 LSQHRKPLQSVTSNEDPNKGTLKFTSNVFQRETMKPVRTSVEGSMHVTLKHKHSLGNYLP 914

Query: 241 QKRMSDVSECDDFE 254
           QKRMSDVSEC DFE
Sbjct: 915 QKRMSDVSECVDFE 928

[Close]
BLAST of Cucsat.G15341.T9 vs. NCBI nr
Match: XP_038878248.1 (protein CHROMATIN REMODELING 25 [Benincasa hispida])

HSP 1 Score: 469 bits (1206), Expect = 1.23e-156
Identity = 232/254 (91.34%), Postives = 240/254 (94.49%), Query Frame = 0 

Query: 1   MSKEGLQKVIQQESTNNLTTQVNFLSSEDLRDLFSFHDNVRSEIHEKMNCSRCQNCYGRP 60
           MSKEGLQKVIQQEST+NLTTQVNFLSSEDLRDLFSFHDN+RSEIHEKMNCSRCQNC GRP
Sbjct: 675 MSKEGLQKVIQQESTDNLTTQVNFLSSEDLRDLFSFHDNIRSEIHEKMNCSRCQNCCGRP 734

Query: 61  EDMDENLSTNGPCQSDQVTSDIGGFAQLAGCLDKLKKSEQQVGSPLEEDLGNWGHHFDST 120
           EDMDE+LST GPCQSDQVTSDIGGFAQLAGCLDKLKKSEQQVGSPLEEDL NWGHHFDS 
Sbjct: 735 EDMDEDLSTTGPCQSDQVTSDIGGFAQLAGCLDKLKKSEQQVGSPLEEDLANWGHHFDSA 794

Query: 121 TVPDTILQASAGDEVTFVFSNQVDGKLVPVESMSSPRMKDAEGNGNNSRLNQNSRQKPFL 180
           TVPDTILQASAGDEVTFVFSNQVDGKLVPVESM+SPRMK+AEGNGNNS+L QNSRQK  L
Sbjct: 795 TVPDTILQASAGDEVTFVFSNQVDGKLVPVESMTSPRMKEAEGNGNNSKLKQNSRQKLLL 854

Query: 181 LSQHRKPLQSITSNEDPNKGTLKFTSTVFQSETMKPVRTSVEGSMHVTLKHKHSLGNYLP 240
           +SQHRKPLQSITSNED NKG L FTS VFQ ETMKPVR SVEGSMHVTLKHKH LGNYLP
Sbjct: 855 VSQHRKPLQSITSNEDLNKGPLTFTSNVFQRETMKPVRNSVEGSMHVTLKHKHYLGNYLP 914

Query: 241 QKRMSDVSECDDFE 254
           QKRMSDVSEC+DFE
Sbjct: 915 QKRMSDVSECEDFE 928

[Close]
BLAST of Cucsat.G15341.T9 vs. NCBI nr
Match: TYK13976.1 (protein CHROMATIN REMODELING 25 isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 439 bits (1129), Expect = 1.22e-144
Identity = 223/254 (87.80%), Postives = 230/254 (90.55%), Query Frame = 0 

Query: 1   MSKEGLQKVIQQESTNNLTTQVNFLSSEDLRDLFSFHDNVRSEIHEKMNCSRCQNCYGRP 60
           MSKEGLQKVIQQESTNNLTTQVNFLSSEDLRDLFSFHDNVR                  P
Sbjct: 738 MSKEGLQKVIQQESTNNLTTQVNFLSSEDLRDLFSFHDNVR------------------P 797

Query: 61  EDMDENLSTNGPCQSDQVTSDIGGFAQLAGCLDKLKKSEQQVGSPLEEDLGNWGHHFDST 120
           EDMDE+LSTNG CQSDQVTSDIGGFAQLAGCLDKLKKSEQQVGSPLEEDL NWGHHFDST
Sbjct: 798 EDMDEDLSTNGACQSDQVTSDIGGFAQLAGCLDKLKKSEQQVGSPLEEDLANWGHHFDST 857

Query: 121 TVPDTILQASAGDEVTFVFSNQVDGKLVPVESMSSPRMKDAEGNGNNSRLNQNSRQKPFL 180
           TVPDTILQASAGDEVTF+FSNQVDGKLVPVESM+SPR+K+AEGNGNNS LNQN+RQKPFL
Sbjct: 858 TVPDTILQASAGDEVTFIFSNQVDGKLVPVESMTSPRVKEAEGNGNNSGLNQNTRQKPFL 917

Query: 181 LSQHRKPLQSITSNEDPNKGTLKFTSTVFQSETMKPVRTSVEGSMHVTLKHKHSLGNYLP 240
           LSQHRKPLQS+TSNEDPNKGTLKFTS VFQ ETMKPVRTSVEGSMHVTLKHKHSLGNYLP
Sbjct: 918 LSQHRKPLQSVTSNEDPNKGTLKFTSNVFQRETMKPVRTSVEGSMHVTLKHKHSLGNYLP 973

Query: 241 QKRMSDVSECDDFE 254
           QKRMSDVSEC DFE
Sbjct: 978 QKRMSDVSECVDFE 973

[Close]
BLAST of Cucsat.G15341.T9 vs. ExPASy TrEMBL
Match: A0A0A0L9A1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G207350 PE=4 SV=1)

HSP 1 Score: 514 bits (1325), Expect = 8.30e-175
Identity = 254/254 (100.00%), Postives = 254/254 (100.00%), Query Frame = 0 

Query: 1   MSKEGLQKVIQQESTNNLTTQVNFLSSEDLRDLFSFHDNVRSEIHEKMNCSRCQNCYGRP 60
           MSKEGLQKVIQQESTNNLTTQVNFLSSEDLRDLFSFHDNVRSEIHEKMNCSRCQNCYGRP
Sbjct: 675 MSKEGLQKVIQQESTNNLTTQVNFLSSEDLRDLFSFHDNVRSEIHEKMNCSRCQNCYGRP 734

Query: 61  EDMDENLSTNGPCQSDQVTSDIGGFAQLAGCLDKLKKSEQQVGSPLEEDLGNWGHHFDST 120
           EDMDENLSTNGPCQSDQVTSDIGGFAQLAGCLDKLKKSEQQVGSPLEEDLGNWGHHFDST
Sbjct: 735 EDMDENLSTNGPCQSDQVTSDIGGFAQLAGCLDKLKKSEQQVGSPLEEDLGNWGHHFDST 794

Query: 121 TVPDTILQASAGDEVTFVFSNQVDGKLVPVESMSSPRMKDAEGNGNNSRLNQNSRQKPFL 180
           TVPDTILQASAGDEVTFVFSNQVDGKLVPVESMSSPRMKDAEGNGNNSRLNQNSRQKPFL
Sbjct: 795 TVPDTILQASAGDEVTFVFSNQVDGKLVPVESMSSPRMKDAEGNGNNSRLNQNSRQKPFL 854

Query: 181 LSQHRKPLQSITSNEDPNKGTLKFTSTVFQSETMKPVRTSVEGSMHVTLKHKHSLGNYLP 240
           LSQHRKPLQSITSNEDPNKGTLKFTSTVFQSETMKPVRTSVEGSMHVTLKHKHSLGNYLP
Sbjct: 855 LSQHRKPLQSITSNEDPNKGTLKFTSTVFQSETMKPVRTSVEGSMHVTLKHKHSLGNYLP 914

Query: 241 QKRMSDVSECDDFE 254
           QKRMSDVSECDDFE
Sbjct: 915 QKRMSDVSECDDFE 928

[Close]
BLAST of Cucsat.G15341.T9 vs. ExPASy TrEMBL
Match: A0A5A7T0X6 (Protein CHROMATIN REMODELING 25 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold379G00030 PE=4 SV=1)

HSP 1 Score: 490 bits (1261), Expect = 3.39e-165
Identity = 240/254 (94.49%), Postives = 248/254 (97.64%), Query Frame = 0 

Query: 1   MSKEGLQKVIQQESTNNLTTQVNFLSSEDLRDLFSFHDNVRSEIHEKMNCSRCQNCYGRP 60
           MSKEGLQKVIQQESTNNLTTQVNFLSSEDLRDLFSFHDNVRSEIHEKMNC+RCQNCYGRP
Sbjct: 675 MSKEGLQKVIQQESTNNLTTQVNFLSSEDLRDLFSFHDNVRSEIHEKMNCNRCQNCYGRP 734

Query: 61  EDMDENLSTNGPCQSDQVTSDIGGFAQLAGCLDKLKKSEQQVGSPLEEDLGNWGHHFDST 120
           EDMDE+LSTNG CQSDQVTSDIGGFAQLAGCLDKLKKSEQQVGSPLEEDL NWGHHFDST
Sbjct: 735 EDMDEDLSTNGACQSDQVTSDIGGFAQLAGCLDKLKKSEQQVGSPLEEDLANWGHHFDST 794

Query: 121 TVPDTILQASAGDEVTFVFSNQVDGKLVPVESMSSPRMKDAEGNGNNSRLNQNSRQKPFL 180
           TVPDTILQASAGDEVTF+FSNQVDGKLVPVESM+SPR+K+AEGNGNNS LNQN+RQKPFL
Sbjct: 795 TVPDTILQASAGDEVTFIFSNQVDGKLVPVESMTSPRVKEAEGNGNNSGLNQNTRQKPFL 854

Query: 181 LSQHRKPLQSITSNEDPNKGTLKFTSTVFQSETMKPVRTSVEGSMHVTLKHKHSLGNYLP 240
           LSQHRKPLQS+TSNEDPNKGTLKFTS VFQ ETMKPVRTSVEGSMHVTLKHKHSLGNYLP
Sbjct: 855 LSQHRKPLQSVTSNEDPNKGTLKFTSNVFQRETMKPVRTSVEGSMHVTLKHKHSLGNYLP 914

Query: 241 QKRMSDVSECDDFE 254
           QKRMSDVSEC DFE
Sbjct: 915 QKRMSDVSECVDFE 928

[Close]
BLAST of Cucsat.G15341.T9 vs. ExPASy TrEMBL
Match: A0A1S3C3S4 (protein CHROMATIN REMODELING 25 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103496159 PE=4 SV=1)

HSP 1 Score: 490 bits (1261), Expect = 3.39e-165
Identity = 240/254 (94.49%), Postives = 248/254 (97.64%), Query Frame = 0 

Query: 1   MSKEGLQKVIQQESTNNLTTQVNFLSSEDLRDLFSFHDNVRSEIHEKMNCSRCQNCYGRP 60
           MSKEGLQKVIQQESTNNLTTQVNFLSSEDLRDLFSFHDNVRSEIHEKMNC+RCQNCYGRP
Sbjct: 675 MSKEGLQKVIQQESTNNLTTQVNFLSSEDLRDLFSFHDNVRSEIHEKMNCNRCQNCYGRP 734

Query: 61  EDMDENLSTNGPCQSDQVTSDIGGFAQLAGCLDKLKKSEQQVGSPLEEDLGNWGHHFDST 120
           EDMDE+LSTNG CQSDQVTSDIGGFAQLAGCLDKLKKSEQQVGSPLEEDL NWGHHFDST
Sbjct: 735 EDMDEDLSTNGACQSDQVTSDIGGFAQLAGCLDKLKKSEQQVGSPLEEDLANWGHHFDST 794

Query: 121 TVPDTILQASAGDEVTFVFSNQVDGKLVPVESMSSPRMKDAEGNGNNSRLNQNSRQKPFL 180
           TVPDTILQASAGDEVTF+FSNQVDGKLVPVESM+SPR+K+AEGNGNNS LNQN+RQKPFL
Sbjct: 795 TVPDTILQASAGDEVTFIFSNQVDGKLVPVESMTSPRVKEAEGNGNNSGLNQNTRQKPFL 854

Query: 181 LSQHRKPLQSITSNEDPNKGTLKFTSTVFQSETMKPVRTSVEGSMHVTLKHKHSLGNYLP 240
           LSQHRKPLQS+TSNEDPNKGTLKFTS VFQ ETMKPVRTSVEGSMHVTLKHKHSLGNYLP
Sbjct: 855 LSQHRKPLQSVTSNEDPNKGTLKFTSNVFQRETMKPVRTSVEGSMHVTLKHKHSLGNYLP 914

Query: 241 QKRMSDVSECDDFE 254
           QKRMSDVSEC DFE
Sbjct: 915 QKRMSDVSECVDFE 928

[Close]
BLAST of Cucsat.G15341.T9 vs. ExPASy TrEMBL
Match: A0A5D3CU99 (Protein CHROMATIN REMODELING 25 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold832G001800 PE=4 SV=1)

HSP 1 Score: 439 bits (1129), Expect = 5.93e-145
Identity = 223/254 (87.80%), Postives = 230/254 (90.55%), Query Frame = 0 

Query: 1   MSKEGLQKVIQQESTNNLTTQVNFLSSEDLRDLFSFHDNVRSEIHEKMNCSRCQNCYGRP 60
           MSKEGLQKVIQQESTNNLTTQVNFLSSEDLRDLFSFHDNVR                  P
Sbjct: 738 MSKEGLQKVIQQESTNNLTTQVNFLSSEDLRDLFSFHDNVR------------------P 797

Query: 61  EDMDENLSTNGPCQSDQVTSDIGGFAQLAGCLDKLKKSEQQVGSPLEEDLGNWGHHFDST 120
           EDMDE+LSTNG CQSDQVTSDIGGFAQLAGCLDKLKKSEQQVGSPLEEDL NWGHHFDST
Sbjct: 798 EDMDEDLSTNGACQSDQVTSDIGGFAQLAGCLDKLKKSEQQVGSPLEEDLANWGHHFDST 857

Query: 121 TVPDTILQASAGDEVTFVFSNQVDGKLVPVESMSSPRMKDAEGNGNNSRLNQNSRQKPFL 180
           TVPDTILQASAGDEVTF+FSNQVDGKLVPVESM+SPR+K+AEGNGNNS LNQN+RQKPFL
Sbjct: 858 TVPDTILQASAGDEVTFIFSNQVDGKLVPVESMTSPRVKEAEGNGNNSGLNQNTRQKPFL 917

Query: 181 LSQHRKPLQSITSNEDPNKGTLKFTSTVFQSETMKPVRTSVEGSMHVTLKHKHSLGNYLP 240
           LSQHRKPLQS+TSNEDPNKGTLKFTS VFQ ETMKPVRTSVEGSMHVTLKHKHSLGNYLP
Sbjct: 918 LSQHRKPLQSVTSNEDPNKGTLKFTSNVFQRETMKPVRTSVEGSMHVTLKHKHSLGNYLP 973

Query: 241 QKRMSDVSECDDFE 254
           QKRMSDVSEC DFE
Sbjct: 978 QKRMSDVSECVDFE 973

[Close]
BLAST of Cucsat.G15341.T9 vs. ExPASy TrEMBL
Match: A0A6J1IUV2 (protein CHROMATIN REMODELING 25 OS=Cucurbita maxima OX=3661 GN=LOC111478773 PE=4 SV=1)

HSP 1 Score: 433 bits (1113), Expect = 5.32e-143
Identity = 217/254 (85.43%), Postives = 230/254 (90.55%), Query Frame = 0 

Query: 1   MSKEGLQKVIQQESTNNLTTQVNFLSSEDLRDLFSFHDNVRSEIHEKMNCSRCQNCYGRP 60
           MSKEGLQKVIQQE T+NLT Q NFLSSEDLRDLFSFH +VRSEIHEKMNC+RCQNC GRP
Sbjct: 679 MSKEGLQKVIQQELTDNLTAQANFLSSEDLRDLFSFHGDVRSEIHEKMNCTRCQNCNGRP 738

Query: 61  EDMDENLSTNGPCQSDQVTSDIGGFAQLAGCLDKLKKSEQQVGSPLEEDLGNWGHHFDST 120
           E+MDE  ST+  CQSDQVTSDIGGFAQLAGCLDKLKKSEQQVGSPLEEDL NWGHHF+ST
Sbjct: 739 EEMDEGPSTSRTCQSDQVTSDIGGFAQLAGCLDKLKKSEQQVGSPLEEDLANWGHHFNST 798

Query: 121 TVPDTILQASAGDEVTFVFSNQVDGKLVPVESMSSPRMKDAEGNGNNSRLNQNSRQKPFL 180
           TVPDTILQASAGDEVTFVFSNQ+DGKLVPVES +SPRMK+AEGN  NS+LNQNS+QK  L
Sbjct: 799 TVPDTILQASAGDEVTFVFSNQIDGKLVPVESKTSPRMKEAEGNEKNSKLNQNSKQKLLL 858

Query: 181 LSQHRKPLQSITSNEDPNKGTLKFTSTVFQSETMKPVRTSVEGSMHVTLKHKHSLGNYLP 240
           +SQHRKPLQSITSNED NKGTL FTS VFQ ETMKPVRTS+EGSMHVTL  KHSLGNYLP
Sbjct: 859 VSQHRKPLQSITSNEDLNKGTLTFTSNVFQRETMKPVRTSLEGSMHVTLNLKHSLGNYLP 918

Query: 241 QKRMSDVSECDDFE 254
           QKRMSD  E DDFE
Sbjct: 919 QKRMSDAVEYDDFE 932

The following BLAST results are available for this feature:
BLAST of Cucsat.G15341.T9 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q0PCS32.2e-5761.11Protein CHROMATIN REMODELING 25 OS=Arabidopsis thaliana OX=3702 GN=CHR25 PE=1 SV... [more]
A4PBL42.6e-4256.33DNA repair and recombination protein RAD54 OS=Oryza sativa subsp. japonica OX=39... [more]
B3MMA51.7e-0425.68DNA repair and recombination protein RAD54-like OS=Drosophila ananassae OX=7217 ... [more]
BLAST of Cucsat.G15341.T9 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN57560.21.62e-174100.00hypothetical protein Csa_010402 [Cucumis sativus][more]
XP_031737571.11.76e-174100.00protein CHROMATIN REMODELING 25 [Cucumis sativus][more]
XP_008456127.17.00e-16594.49PREDICTED: protein CHROMATIN REMODELING 25 isoform X1 [Cucumis melo] >KAA0037102... [more]
XP_038878248.11.23e-15691.34protein CHROMATIN REMODELING 25 [Benincasa hispida][more]
TYK13976.11.22e-14487.80protein CHROMATIN REMODELING 25 isoform X1 [Cucumis melo var. makuwa][more]
BLAST of Cucsat.G15341.T9 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L9A18.30e-175100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G207350 PE=4 SV=1[more]
A0A5A7T0X63.39e-16594.49Protein CHROMATIN REMODELING 25 isoform X1 OS=Cucumis melo var. makuwa OX=119469... [more]
A0A1S3C3S43.39e-16594.49protein CHROMATIN REMODELING 25 isoform X1 OS=Cucumis melo OX=3656 GN=LOC1034961... [more]
A0A5D3CU995.93e-14587.80Protein CHROMATIN REMODELING 25 isoform X1 OS=Cucumis melo var. makuwa OX=119469... [more]
A0A6J1IUV25.32e-14385.43protein CHROMATIN REMODELING 25 OS=Cucurbita maxima OX=3661 GN=LOC111478773 PE=4... [more]
InterPro
Analysis Name: InterPro Annotations of Cucumber (B10) v3
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 150..173
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 159..173

Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Cucsat.G15341Cucsat.G15341gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Cucsat.G15341.T9.E1Cucsat.G15341.T9.E1exon
Cucsat.G15341.T9.E2Cucsat.G15341.T9.E2exon
Cucsat.G15341.T9.E3Cucsat.G15341.T9.E3exon
Cucsat.G15341.T9.E4Cucsat.G15341.T9.E4exon
Cucsat.G15341.T9.E5Cucsat.G15341.T9.E5exon
Cucsat.G15341.T9.E6Cucsat.G15341.T9.E6exon
Cucsat.G15341.T9.E7Cucsat.G15341.T9.E7exon
Cucsat.G15341.T9.E8Cucsat.G15341.T9.E8exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Cucsat.G15341.T9.C5Cucsat.G15341.T9.C5CDS
Cucsat.G15341.T9.C4Cucsat.G15341.T9.C4CDS
Cucsat.G15341.T9.C3Cucsat.G15341.T9.C3CDS
Cucsat.G15341.T9.C2Cucsat.G15341.T9.C2CDS
Cucsat.G15341.T9.C1Cucsat.G15341.T9.C1CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Cucsat.G15341.T9Cucsat.G15341.T9-proteinpolypeptide


GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0045003 double-strand break repair via synthesis-dependent strand annealing
biological_process GO:0009553 embryo sac development
biological_process GO:0048481 plant ovule development
biological_process GO:0006433 prolyl-tRNA aminoacylation
biological_process GO:0007131 reciprocal meiotic recombination
biological_process GO:0010109 regulation of photosynthesis
biological_process GO:0048316 seed development
cellular_component GO:0017101 aminoacyl-tRNA synthetase multienzyme complex
cellular_component GO:0009507 chloroplast
cellular_component GO:0005739 mitochondrion
cellular_component GO:0005634 nucleus
molecular_function GO:0005524 ATP binding
molecular_function GO:0140658 ATP-dependent chromatin remodeler activity
molecular_function GO:0015616 DNA translocase activity
molecular_function GO:0004386 helicase activity
molecular_function GO:0004827 proline-tRNA ligase activity