Cucsat.G15279.T3 (mRNA) Cucumber (B10) v3

Overview


Name	Cucsat.G15279.T3
Type	mRNA
Organism	Cucumis sativus L. var. sativus cv B10 (Cucumber (B10) v3)
Description	Zinc finger CCHC domain-containing protein 9
Location	ctg2009: 55243 .. 57702 (-)
RNA-Seq Expression	Cucsat.G15279.T3
Synteny	Cucsat.G15279.T3

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

GTTTTTACTTTATACCCGTTCGCATAAACCTCGCCGTCACGCCGTTCGTTGAGAAAACCTCATCGGGATTTCACCGGAGCTGTCACCTTCCGATTCTTACGGACCCTGTTTTCAGGTGAAGATGGTGAACCAAAGGCAAAGACTTGCTCGGAAAAAGTACAAAGAAGAGCACCCAGAACTTTTCCCGAAAGCAGAGCCAACGCCACCGAAAGACCCGGACAAGAAGAAGAAGAAGAGTAAATTCAAGCGCAAAAAGGAAGAATCGAACTCAAACAGAGACCCAAATAAACCCCACAAAAAGGGTTTTAAGAAACACCCTCTTAGAGTACCTGGGATGAAGCCTGGAGAAAGCTGCTTCATCTGCAAAGCTAATGACCACATTGCTAAGCTTTGCCCTGAAAAGGCTCAATGGGAGAAGAACAAGGTCTGTCTTTCTGTTTTACCTTTTGTGTTTCTGGAGTTTCACTGTCTGCTCAGTTCATGGAAAATTTGATCATTGGATAGGATTTTCTTTCAAAGCTACTATAGTAAGGAATGTGGTATCTGTGACAGTGGTTAGGATTGGATTCTGCTCTCCAATTTTAGGGAAACTTCTTAACTTAGTTGTTACTATGCTTAGGGTTCTTCTATCAACTATTGTCACTTTGGAATCGATTGTTAGAGTCCTTGGGGATAGAGGGACATGGATTATTTGGAAGAGCTCTGTGATGATAATCTCTTGGGGAAGTGGAAGGATTGTAAAGAAATAGTTTTTTTAAAAAAATATGGGGATATGCTTTCAAAGTGGGAATTCTGTTTACGGCATGTTAATGGTGTTAAACAAAGGTTTATGAAGCTTTATATGCTGCTGGGGTAGGATGTGATTTGTTCGTTTATTCCACCCTTTGGTTCTTGCAGTCTCCAATTTTCTTTCTATGCTAGGCTGAGCTATATGGTGGAAGATTTGGAATGAAAGAAATACAAAATTTTTTCAAGACAAAGCAAGAACCCCTGTGGAAGTTCTTAGTTCAGCTTTATTCAAAGTACTTTTTGGGTGTAAAAAACATACATCTGTTCTCGAGTTACAACTTAGATTTCCTTGTATCATTTTAAACAAAGCATGATGGGCTCATTTTGTAACACTGTGGATATTCCATTCATCAATGAAATTGTTTCTTATCCAAAAAAAGGCACATGGTCCTTCCTTTATGCTTTTGAATTTAAGGTTGTTTTTGGCTTTTGCATTCAAGGACATTAATAGCAAATTTTTTGTATTATTGCCATGCTGAAGGGAGTCATATGTTCATCTCTGTTACTTGACATTCACAGATATGCTTGCTTTGCCGGAGACGAGGGCACAGTCTCAAGAATTGTCCAGACAAAAATGAAGGGACCGTGGACAAGAAGTTATGCTATAACTGTGGTGAAACAGGACATTCACTAGCTAATTGTTCACAACCCCTTCAAGATGGTAAATTTTATTACAAATTCAAACTCATATTTATCAGTGCTTTGCATAATATGTAGAATATTTCATTTTGGGTTTCCTTGAGGCACTTGTATTCCCATCTTTCTAAACCAAATGCCTCTCGTATATTCCTATGAAATGAAGTGCTTTTGTGATACATATGCTCTGGAGCTTGTAAGGATTTATTTTTTTATTTTCTGAATTATGTGTATTGTTTTCCATCTTGGATCTGCAGGGGGAACTAAATTCGCCAGTTGTTTTATTTGTAATGAAGGTGGACACTTAAGCAAGAATTGTCCGAAGAATACTCACGGGATCTACCCTAAGGTATTTGGTTTAACCTTCACATATTTAACTTTCATGTGATTAGCAATGGTCACACACCAAACTCTTGGCTTCCCTATAATGTTCTAGGTTTGCCCATAGTCTCCTTGTATCATACAACATTAAGAATTTCCTTGGATGATATTCTGCAGGGTGGTTGTTGTAAAACTTGTGGAGAAGTCACACATTTAGCTAAGGATTGTCCAAAGAAAGGAACCCAAGTGTTTGATAGGGCTGGTGTATTTGGTTACAGATGTAAGTATTCCTGCTTCTTGTTTCTTATTTATATTTTTATTTGTAAGTTTCCAACTTTGTTTCTATCGTTTCGTTTTTAGTGTGTGCTGTTGTGACATGTTTGTTGGTACAATCTAAAAATTATAACCATTTTGAAAAAAGATGTCATAATTTCTTCATATGCATTATTCCTTCTTTATCATTGGGTTATTATGTACATCGAAGAATAGAGCTTCCTTATCTGTCTAGACAGTTTTCTTGAAGATATTTAACTCAATATAACTGAGATTAGAACAACAAAGCCAAAGTCATTATAACTGAGCTAACCATCTCCATTTGACTGAGATACGAGGGTCAGACATAGAAATCATGACCTTTGGTTCTTAAGGATATCATATCATTTCACCCACTCACGGTCAAGCCTACTTGGGGGAGCATCAAATAACATTGATATC

Coding sequence (CDS)

ATGGTGAACCAAAGGCAAAGACTTGCTCGGAAAAAGTACAAAGAAGAGCACCCAGAACTTTTCCCGAAAGCAGAGCCAACGCCACCGAAAGACCCGGACAAGAAGAAGAAGAAGAGTAAATTCAAGCGCAAAAAGGAAGAATCGAACTCAAACAGAGACCCAAATAAACCCCACAAAAAGGGTTTTAAGAAACACCCTCTTAGAGTACCTGGGATGAAGCCTGGAGAAAGCTGCTTCATCTGCAAAGCTAATGACCACATTGCTAAGCTTTGCCCTGAAAAGGCTCAATGGGAGAAGAACAAGATATGCTTGCTTTGCCGGAGACGAGGGCACAGTCTCAAGAATTGTCCAGACAAAAATGAAGGGACCGTGGACAAGAAGTTATGCTATAACTGTGGTGAAACAGGACATTCACTAGCTAATTGTTCACAACCCCTTCAAGATGGGGGAACTAAATTCGCCAGTTGTTTTATTTGTAATGAAGGTGGACACTTAAGCAAGAATTGTCCGAAGAATACTCACGGGATCTACCCTAAGGGTGGTTGTTGTAAAACTTGTGGAGAAGTCACACATTTAGCTAAGGATTGTCCAAAGAAAGGAACCCAAGTGTTTGATAGGGCTGGTGTATTTGGTTACAGATGTAAGTATTCCTGCTTCTTGTTTCTTATTTATATTTTTATTTGTAAGTTTCCAACTTTGTTTCTATCGTTTCGTTTTTAG

Protein sequence

MVNQRQRLARKKYKEEHPELFPKAEPTPPKDPDKKKKKSKFKRKKEESNSNRDPNKPHKKGFKKHPLRVPGMKPGESCFICKANDHIAKLCPEKAQWEKNKICLLCRRRGHSLKNCPDKNEGTVDKKLCYNCGETGHSLANCSQPLQDGGTKFASCFICNEGGHLSKNCPKNTHGIYPKGGCCKTCGEVTHLAKDCPKKGTQVFDRAGVFGYRCKYSCFLFLIYIFICKFPTLFLSFRF

Homology

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BLAST of Cucsat.G15279.T3 vs. ExPASy Swiss-Prot
Match: Q9HFF2 (Uncharacterized protein C683.02c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=SPAC683.02c PE=4 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 3.1e-24
Identity = 49/101 (48.51%), Postives = 64/101 (63.37%), Query Frame = 0


Query: 96  QWEKNKICLLCRRRGHSLKNCPDKNEGTVDKKLCYNCGETGHSLANCSQPLQDGGTKFAS 155
           Q  ++K C  CR++GH +++CP+  +      +C+ CG   HSL  CS   + G  KFA 
Sbjct: 72  QRNRDKFCFACRQQGHIVQDCPEAKDNV---SICFRCGSKEHSLNACS---KKGPLKFAK 131

Query: 156 CFICNEGGHLSKNCPKNTHGIYPKGGCCKTCGEVTHLAKDC 197
           CFIC+E GHLS  C +N  G+YPKGGCCK C  V HLAKDC
Sbjct: 132 CFICHENGHLSGQCEQNPKGLYPKGGCCKFCSSVHHLAKDC 166

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BLAST of Cucsat.G15279.T3 vs. ExPASy Swiss-Prot
Match: Q8N567 (Zinc finger CCHC domain-containing protein 9 OS=Homo sapiens OX=9606 GN=ZCCHC9 PE=1 SV=2)

HSP 1 Score: 102.8 bits (255), Expect = 5.4e-21
Identity = 44/100 (44.00%), Postives = 57/100 (57.00%), Query Frame = 0


Query: 102 ICLLCRRRGHSLKNCPDKNEG-TVDKKLCYNCGETGHSLANCSQPLQD--GGTKFASCFI 161
           +C  CR+ GH + +CP   E   +   +CY CG T H +  C   +    G   FA CF+
Sbjct: 129 VCFHCRKPGHGIADCPAALENQDMGTGICYRCGSTEHEITKCKAKVDPALGEFPFAKCFV 188

Query: 162 CNEGGHLSKNCPKNTHGIYPKGGCCKTCGEVTHLAKDCPK 199
           C E GHLS++CP N  G+Y  GG CK CG V HL KDCP+
Sbjct: 189 CGEMGHLSRSCPDNPKGLYADGGGCKLCGSVEHLKKDCPE 228

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BLAST of Cucsat.G15279.T3 vs. ExPASy Swiss-Prot
Match: Q8R1J3 (Zinc finger CCHC domain-containing protein 9 OS=Mus musculus OX=10090 GN=Zcchc9 PE=2 SV=2)

HSP 1 Score: 100.5 bits (249), Expect = 2.7e-20
Identity = 43/98 (43.88%), Postives = 56/98 (57.14%), Query Frame = 0


Query: 102 ICLLCRRRGHSLKNCPDKNEG-TVDKKLCYNCGETGHSLANCSQPLQD--GGTKFASCFI 161
           +C  CR+ GH + +CP   E   +   +CY CG T H ++ C   +    G   FA CF+
Sbjct: 129 VCFHCRQPGHGIADCPAVLESQDMGTGICYRCGSTEHEMSKCRANVDPALGEFPFAKCFV 188

Query: 162 CNEGGHLSKNCPKNTHGIYPKGGCCKTCGEVTHLAKDC 197
           C E GHLS++CP NT G+Y  GG CK CG V H  KDC
Sbjct: 189 CGEMGHLSRSCPDNTKGVYADGGSCKLCGSVEHFKKDC 226

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BLAST of Cucsat.G15279.T3 vs. ExPASy Swiss-Prot
Match: Q8T8R1 (CCHC-type zinc finger protein CG3800 OS=Drosophila melanogaster OX=7227 GN=CG3800 PE=1 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 1.9e-18
Identity = 44/125 (35.20%), Postives = 62/125 (49.60%), Query Frame = 0


Query: 76  ESCFICKANDHIAKLCPEKAQWEKNKICLLCRRRGHSLKNCPDKNEGTVDKKLCYNCGET 135
           E C+ C    H A+ CPE+A+      C  C   GH  K+C        D   CY C +T
Sbjct: 55  EKCYKCNQFGHFARACPEEAE-----RCYRCNGIGHISKDCTQ-----ADNPTCYRCNKT 114

Query: 136 GHSLANCSQPLQDGGTKFASCFICNEGGHLSKNCPKNTHGIYPKGGCCKTCGEVTHLAKD 195
           GH + NC + + + G    SC+ CN  GH+SKNCP+ +         C  CG+  HL ++
Sbjct: 115 GHWVRNCPEAVNERGPTNVSCYKCNRTGHISKNCPETSK-------TCYGCGKSGHLRRE 162

Query: 196 CPKKG 201
           C +KG
Sbjct: 175 CDEKG 162

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BLAST of Cucsat.G15279.T3 vs. ExPASy Swiss-Prot
Match: Q04832 (DNA-binding protein HEXBP OS=Leishmania major OX=5664 GN=HEXBP PE=4 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 1.1e-16
Identity = 43/147 (29.25%), Postives = 62/147 (42.18%), Query Frame = 0


Query: 70  PGMKPGESCFICKANDHIAKLCPEKAQW--EKNKICLLCRRRGHSLKNCPDK-NEGTVDK 129
           P  +   SC  C    H A+ CPE      E++  C  C   GH  + CP++   G    
Sbjct: 10  PRTESSTSCRNCGKEGHYARECPEADSKGDERSTTCFRCGEEGHMSRECPNEARSGAAGA 69

Query: 130 KLCYNCGETGHSLANCSQPLQDGGTKFASCFICNEGGHLSKNCPKN-------------- 189
             C+ CGE GH   +C    + G  K   C+ C + GHLS++CP +              
Sbjct: 70  MTCFRCGEAGHMSRDCPNSAKPGAAKGFECYKCGQEGHLSRDCPSSQGGSRGGYGQKRGR 129

Query: 190 --THGIYPKGGCCKTCGEVTHLAKDCP 198
               G Y     C  CG+  H+++DCP
Sbjct: 130 SGAQGGYSGDRTCYKCGDAGHISRDCP 156

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BLAST of Cucsat.G15279.T3 vs. NCBI nr
Match: XP_031738808.1 (zinc finger CCHC domain-containing protein 9 [Cucumis sativus] >KGN57377.1 hypothetical protein Csa_010226 [Cucumis sativus])

HSP 1 Score: 447 bits (1151), Expect = 1.16e-157
Identity = 210/213 (98.59%), Postives = 210/213 (98.59%), Query Frame = 0


Query: 1   MVNQRQRLARKKYKEEHPELFPKAEPTPPKDPDKKKKKSKFKRKKEESNSNRDPNKPHKK 60
           MVNQRQRLARKKYKEEHPELFPKAEPTPPKDPDKKKKKSKFKRKKEESNSNRDP KPHKK
Sbjct: 1   MVNQRQRLARKKYKEEHPELFPKAEPTPPKDPDKKKKKSKFKRKKEESNSNRDPTKPHKK 60

Query: 61  GFKKHPLRVPGMKPGESCFICKANDHIAKLCPEKAQWEKNKICLLCRRRGHSLKNCPDKN 120
           GFKKHPLRVPGMKPGESCFICKANDHIAKLCPEKAQWEKNKICLLCRRRGHSLKNCPDKN
Sbjct: 61  GFKKHPLRVPGMKPGESCFICKANDHIAKLCPEKAQWEKNKICLLCRRRGHSLKNCPDKN 120

Query: 121 EGTVDKKLCYNCGETGHSLANCSQPLQDGGTKFASCFICNEGGHLSKNCPKNTHGIYPKG 180
           EGTVDKKLCYNCGETGHSLANC QPLQDGGTKFASCFICNE GHLSKNCPKNTHGIYPKG
Sbjct: 121 EGTVDKKLCYNCGETGHSLANCPQPLQDGGTKFASCFICNESGHLSKNCPKNTHGIYPKG 180

Query: 181 GCCKTCGEVTHLAKDCPKKGTQVFDRAGVFGYR 213
           GCCKTCGEVTHLAKDCPKKGTQVFDRAGVFGYR
Sbjct: 181 GCCKTCGEVTHLAKDCPKKGTQVFDRAGVFGYR 213

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BLAST of Cucsat.G15279.T3 vs. NCBI nr
Match: TYK22955.1 (zinc finger CCHC domain-containing protein 9 [Cucumis melo var. makuwa])

HSP 1 Score: 418 bits (1074), Expect = 1.15e-145
Identity = 203/231 (87.88%), Postives = 206/231 (89.18%), Query Frame = 0


Query: 1   MVNQRQRLARKKYKEEHPELFPKAEPTPPKDPDKKKKKSKFKRKKEESNSNRDPNKPHKK 60
           MV+QRQRLARKKY+E HPELFPKAEPTPPKDPDKKKK SKFKRKK ESNSNRDPNKPHKK
Sbjct: 1   MVSQRQRLARKKYREGHPELFPKAEPTPPKDPDKKKK-SKFKRKKGESNSNRDPNKPHKK 60

Query: 61  GFKKHPLRVPGMKPGESCFICKANDHIAKLCPEKAQWEKNK------------------I 120
           GFKKHPLRVPGMKPGESCFICKA DHIAKLCPEKAQWEKNK                  I
Sbjct: 61  GFKKHPLRVPGMKPGESCFICKAKDHIAKLCPEKAQWEKNKVCLSGLPFVLLEFHCLLDI 120

Query: 121 CLLCRRRGHSLKNCPDKNEGTVDKKLCYNCGETGHSLANCSQPLQDGGTKFASCFICNEG 180
           CLLCRRRGHSLKNCPDKNEGT+DKKLCYNCGETGHSLANC QPLQDGGTKFASCFICNE 
Sbjct: 121 CLLCRRRGHSLKNCPDKNEGTMDKKLCYNCGETGHSLANCPQPLQDGGTKFASCFICNES 180

Query: 181 GHLSKNCPKNTHGIYPKGGCCKTCGEVTHLAKDCPKKGTQVFDRAGVFGYR 213
           GHLSKNCPKNTHGIYPKGGCCKTCGEVTHLAKDCPKKGTQVFDRAGV GYR
Sbjct: 181 GHLSKNCPKNTHGIYPKGGCCKTCGEVTHLAKDCPKKGTQVFDRAGVSGYR 230

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BLAST of Cucsat.G15279.T3 vs. NCBI nr
Match: XP_008439227.1 (PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103484078 [Cucumis melo])

HSP 1 Score: 419 bits (1077), Expect = 1.54e-144
Identity = 198/208 (95.19%), Postives = 201/208 (96.63%), Query Frame = 0


Query: 1   MVNQRQRLARKKYKEEHPELFPKAEPTPPKDPDKKKKKSKFKRKKEESNSNRDPNKPHKK 60
           MV+QRQRLARKKY+E HPELFPKAEPTPPKDPDKKKK SKFKRKK ESNSNRDPNKPHKK
Sbjct: 1   MVSQRQRLARKKYREGHPELFPKAEPTPPKDPDKKKK-SKFKRKKGESNSNRDPNKPHKK 60

Query: 61  GFKKHPLRVPGMKPGESCFICKANDHIAKLCPEKAQWEKNKICLLCRRRGHSLKNCPDKN 120
           GFKKHPLRVPGMKPGESCFICKA DHIAKLCPEKAQWEKNKICLLCRRRGHSLKNCPDKN
Sbjct: 61  GFKKHPLRVPGMKPGESCFICKAKDHIAKLCPEKAQWEKNKICLLCRRRGHSLKNCPDKN 120

Query: 121 EGTVDKKLCYNCGETGHSLANCSQPLQDGGTKFASCFICNEGGHLSKNCPKNTHGIYPKG 180
           EGT+DKKLCYNCGETGHSLANC QPLQDGGTKFASCFICNE GHLSKNCPKNTHGIYPKG
Sbjct: 121 EGTMDKKLCYNCGETGHSLANCPQPLQDGGTKFASCFICNESGHLSKNCPKNTHGIYPKG 180

Query: 181 GCCKTCGEVTHLAKDCPKKGTQVFDRAG 208
           GCCKTCGEVTHLAKDCPKKGTQVFDRA 
Sbjct: 181 GCCKTCGEVTHLAKDCPKKGTQVFDRAA 207

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BLAST of Cucsat.G15279.T3 vs. NCBI nr
Match: KAA0033654.1 (zinc finger CCHC domain-containing protein 9 [Cucumis melo var. makuwa])

HSP 1 Score: 418 bits (1074), Expect = 1.07e-143
Identity = 203/231 (87.88%), Postives = 206/231 (89.18%), Query Frame = 0


Query: 1   MVNQRQRLARKKYKEEHPELFPKAEPTPPKDPDKKKKKSKFKRKKEESNSNRDPNKPHKK 60
           MV+QRQRLARKKY+E HPELFPKAEPTPPKDPDKKKK SKFKRKK ESNSNRDPNKPHKK
Sbjct: 1   MVSQRQRLARKKYREGHPELFPKAEPTPPKDPDKKKK-SKFKRKKGESNSNRDPNKPHKK 60

Query: 61  GFKKHPLRVPGMKPGESCFICKANDHIAKLCPEKAQWEKNK------------------I 120
           GFKKHPLRVPGMKPGESCFICKA DHIAKLCPEKAQWEKNK                  I
Sbjct: 61  GFKKHPLRVPGMKPGESCFICKAKDHIAKLCPEKAQWEKNKVCLSGLPFVLLEFHCLLDI 120

Query: 121 CLLCRRRGHSLKNCPDKNEGTVDKKLCYNCGETGHSLANCSQPLQDGGTKFASCFICNEG 180
           CLLCRRRGHSLKNCPDKNEGT+DKKLCYNCGETGHSLANC QPLQDGGTKFASCFICNE 
Sbjct: 121 CLLCRRRGHSLKNCPDKNEGTMDKKLCYNCGETGHSLANCPQPLQDGGTKFASCFICNES 180

Query: 181 GHLSKNCPKNTHGIYPKGGCCKTCGEVTHLAKDCPKKGTQVFDRAGVFGYR 213
           GHLSKNCPKNTHGIYPKGGCCKTCGEVTHLAKDCPKKGTQVFDRAGV GYR
Sbjct: 181 GHLSKNCPKNTHGIYPKGGCCKTCGEVTHLAKDCPKKGTQVFDRAGVSGYR 230

[Close]

BLAST of Cucsat.G15279.T3 vs. NCBI nr
Match: XP_038886312.1 (uncharacterized protein LOC120076526 [Benincasa hispida])

HSP 1 Score: 418 bits (1074), Expect = 3.24e-143
Identity = 197/213 (92.49%), Postives = 202/213 (94.84%), Query Frame = 0


Query: 1   MVNQRQRLARKKYKEEHPELFPKAEPTPPKDPDKKKKKSKFKRKKEESNSNRDPNKPHKK 60
           MV+QRQRLARKKY+EEHPELFPKAEPTPPKDPDKKKKKSKFKRKKEES SNRD NKP+KK
Sbjct: 1   MVSQRQRLARKKYREEHPELFPKAEPTPPKDPDKKKKKSKFKRKKEESISNRDANKPYKK 60

Query: 61  GFKKHPLRVPGMKPGESCFICKANDHIAKLCPEKAQWEKNKICLLCRRRGHSLKNCPDKN 120
           GFKKHPLRVPGMKPGESCFICKA DHIAKLCPEKAQWEKNKICLLCRRRGHSLKNCPDKN
Sbjct: 61  GFKKHPLRVPGMKPGESCFICKAKDHIAKLCPEKAQWEKNKICLLCRRRGHSLKNCPDKN 120

Query: 121 EGTVDKKLCYNCGETGHSLANCSQPLQDGGTKFASCFICNEGGHLSKNCPKNTHGIYPKG 180
           EGT+DKKLCYNCGETGHSLANC QP+QDGGTKFASCFICNE GHLSKNCPKNTHGIYPKG
Sbjct: 121 EGTLDKKLCYNCGETGHSLANCPQPIQDGGTKFASCFICNESGHLSKNCPKNTHGIYPKG 180

Query: 181 GCCKTCGEVTHLAKDCPKKGTQVFDRAGVFGYR 213
           G CKTCGEVTHLAKDCP KGTQV DR G  GYR
Sbjct: 181 GGCKTCGEVTHLAKDCPNKGTQVIDRVGESGYR 213

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BLAST of Cucsat.G15279.T3 vs. ExPASy TrEMBL
Match: A0A0A0L9S9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G182130 PE=4 SV=1)

HSP 1 Score: 447 bits (1151), Expect = 5.63e-158
Identity = 210/213 (98.59%), Postives = 210/213 (98.59%), Query Frame = 0


Query: 1   MVNQRQRLARKKYKEEHPELFPKAEPTPPKDPDKKKKKSKFKRKKEESNSNRDPNKPHKK 60
           MVNQRQRLARKKYKEEHPELFPKAEPTPPKDPDKKKKKSKFKRKKEESNSNRDP KPHKK
Sbjct: 1   MVNQRQRLARKKYKEEHPELFPKAEPTPPKDPDKKKKKSKFKRKKEESNSNRDPTKPHKK 60

Query: 61  GFKKHPLRVPGMKPGESCFICKANDHIAKLCPEKAQWEKNKICLLCRRRGHSLKNCPDKN 120
           GFKKHPLRVPGMKPGESCFICKANDHIAKLCPEKAQWEKNKICLLCRRRGHSLKNCPDKN
Sbjct: 61  GFKKHPLRVPGMKPGESCFICKANDHIAKLCPEKAQWEKNKICLLCRRRGHSLKNCPDKN 120

Query: 121 EGTVDKKLCYNCGETGHSLANCSQPLQDGGTKFASCFICNEGGHLSKNCPKNTHGIYPKG 180
           EGTVDKKLCYNCGETGHSLANC QPLQDGGTKFASCFICNE GHLSKNCPKNTHGIYPKG
Sbjct: 121 EGTVDKKLCYNCGETGHSLANCPQPLQDGGTKFASCFICNESGHLSKNCPKNTHGIYPKG 180

Query: 181 GCCKTCGEVTHLAKDCPKKGTQVFDRAGVFGYR 213
           GCCKTCGEVTHLAKDCPKKGTQVFDRAGVFGYR
Sbjct: 181 GCCKTCGEVTHLAKDCPKKGTQVFDRAGVFGYR 213

[Close]

BLAST of Cucsat.G15279.T3 vs. ExPASy TrEMBL
Match: A0A5D3DHA5 (Zinc finger CCHC domain-containing protein 9 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold386G00580 PE=4 SV=1)

HSP 1 Score: 418 bits (1074), Expect = 5.58e-146
Identity = 203/231 (87.88%), Postives = 206/231 (89.18%), Query Frame = 0


Query: 1   MVNQRQRLARKKYKEEHPELFPKAEPTPPKDPDKKKKKSKFKRKKEESNSNRDPNKPHKK 60
           MV+QRQRLARKKY+E HPELFPKAEPTPPKDPDKKKK SKFKRKK ESNSNRDPNKPHKK
Sbjct: 1   MVSQRQRLARKKYREGHPELFPKAEPTPPKDPDKKKK-SKFKRKKGESNSNRDPNKPHKK 60

Query: 61  GFKKHPLRVPGMKPGESCFICKANDHIAKLCPEKAQWEKNK------------------I 120
           GFKKHPLRVPGMKPGESCFICKA DHIAKLCPEKAQWEKNK                  I
Sbjct: 61  GFKKHPLRVPGMKPGESCFICKAKDHIAKLCPEKAQWEKNKVCLSGLPFVLLEFHCLLDI 120

Query: 121 CLLCRRRGHSLKNCPDKNEGTVDKKLCYNCGETGHSLANCSQPLQDGGTKFASCFICNEG 180
           CLLCRRRGHSLKNCPDKNEGT+DKKLCYNCGETGHSLANC QPLQDGGTKFASCFICNE 
Sbjct: 121 CLLCRRRGHSLKNCPDKNEGTMDKKLCYNCGETGHSLANCPQPLQDGGTKFASCFICNES 180

Query: 181 GHLSKNCPKNTHGIYPKGGCCKTCGEVTHLAKDCPKKGTQVFDRAGVFGYR 213
           GHLSKNCPKNTHGIYPKGGCCKTCGEVTHLAKDCPKKGTQVFDRAGV GYR
Sbjct: 181 GHLSKNCPKNTHGIYPKGGCCKTCGEVTHLAKDCPKKGTQVFDRAGVSGYR 230

[Close]

BLAST of Cucsat.G15279.T3 vs. ExPASy TrEMBL
Match: A0A1S3AY90 (LOW QUALITY PROTEIN: uncharacterized protein LOC103484078 OS=Cucumis melo OX=3656 GN=LOC103484078 PE=3 SV=1)

HSP 1 Score: 419 bits (1077), Expect = 7.45e-145
Identity = 198/208 (95.19%), Postives = 201/208 (96.63%), Query Frame = 0


Query: 1   MVNQRQRLARKKYKEEHPELFPKAEPTPPKDPDKKKKKSKFKRKKEESNSNRDPNKPHKK 60
           MV+QRQRLARKKY+E HPELFPKAEPTPPKDPDKKKK SKFKRKK ESNSNRDPNKPHKK
Sbjct: 1   MVSQRQRLARKKYREGHPELFPKAEPTPPKDPDKKKK-SKFKRKKGESNSNRDPNKPHKK 60

Query: 61  GFKKHPLRVPGMKPGESCFICKANDHIAKLCPEKAQWEKNKICLLCRRRGHSLKNCPDKN 120
           GFKKHPLRVPGMKPGESCFICKA DHIAKLCPEKAQWEKNKICLLCRRRGHSLKNCPDKN
Sbjct: 61  GFKKHPLRVPGMKPGESCFICKAKDHIAKLCPEKAQWEKNKICLLCRRRGHSLKNCPDKN 120

Query: 121 EGTVDKKLCYNCGETGHSLANCSQPLQDGGTKFASCFICNEGGHLSKNCPKNTHGIYPKG 180
           EGT+DKKLCYNCGETGHSLANC QPLQDGGTKFASCFICNE GHLSKNCPKNTHGIYPKG
Sbjct: 121 EGTMDKKLCYNCGETGHSLANCPQPLQDGGTKFASCFICNESGHLSKNCPKNTHGIYPKG 180

Query: 181 GCCKTCGEVTHLAKDCPKKGTQVFDRAG 208
           GCCKTCGEVTHLAKDCPKKGTQVFDRA 
Sbjct: 181 GCCKTCGEVTHLAKDCPKKGTQVFDRAA 207

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BLAST of Cucsat.G15279.T3 vs. ExPASy TrEMBL
Match: A0A5A7SR44 (Zinc finger CCHC domain-containing protein 9 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold239G001180 PE=3 SV=1)

HSP 1 Score: 418 bits (1074), Expect = 5.17e-144
Identity = 203/231 (87.88%), Postives = 206/231 (89.18%), Query Frame = 0


Query: 1   MVNQRQRLARKKYKEEHPELFPKAEPTPPKDPDKKKKKSKFKRKKEESNSNRDPNKPHKK 60
           MV+QRQRLARKKY+E HPELFPKAEPTPPKDPDKKKK SKFKRKK ESNSNRDPNKPHKK
Sbjct: 1   MVSQRQRLARKKYREGHPELFPKAEPTPPKDPDKKKK-SKFKRKKGESNSNRDPNKPHKK 60

Query: 61  GFKKHPLRVPGMKPGESCFICKANDHIAKLCPEKAQWEKNK------------------I 120
           GFKKHPLRVPGMKPGESCFICKA DHIAKLCPEKAQWEKNK                  I
Sbjct: 61  GFKKHPLRVPGMKPGESCFICKAKDHIAKLCPEKAQWEKNKVCLSGLPFVLLEFHCLLDI 120

Query: 121 CLLCRRRGHSLKNCPDKNEGTVDKKLCYNCGETGHSLANCSQPLQDGGTKFASCFICNEG 180
           CLLCRRRGHSLKNCPDKNEGT+DKKLCYNCGETGHSLANC QPLQDGGTKFASCFICNE 
Sbjct: 121 CLLCRRRGHSLKNCPDKNEGTMDKKLCYNCGETGHSLANCPQPLQDGGTKFASCFICNES 180

Query: 181 GHLSKNCPKNTHGIYPKGGCCKTCGEVTHLAKDCPKKGTQVFDRAGVFGYR 213
           GHLSKNCPKNTHGIYPKGGCCKTCGEVTHLAKDCPKKGTQVFDRAGV GYR
Sbjct: 181 GHLSKNCPKNTHGIYPKGGCCKTCGEVTHLAKDCPKKGTQVFDRAGVSGYR 230

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BLAST of Cucsat.G15279.T3 vs. ExPASy TrEMBL
Match: A0A6J1E8U1 (ATP-dependent RNA helicase glh-2-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111430474 PE=3 SV=1)

HSP 1 Score: 406 bits (1043), Expect = 3.42e-140
Identity = 193/213 (90.61%), Postives = 196/213 (92.02%), Query Frame = 0


Query: 1   MVNQRQRLARKKYKEEHPELFPKAEPTPPKDPDKKKKKSKFKRKKEESNSNRDPNKPHKK 60
           MV+QRQRLARKKY+EEHPELFP+ EPTPPKDPDKKKKKSKFKRKK ESNS RDPNKPHKK
Sbjct: 1   MVSQRQRLARKKYREEHPELFPEVEPTPPKDPDKKKKKSKFKRKKAESNSTRDPNKPHKK 60

Query: 61  GFKKHPLRVPGMKPGESCFICKANDHIAKLCPEKAQWEKNKICLLCRRRGHSLKNCPDKN 120
           GFKKHPLRVPGMKPGESCFICKA DHIAKLCPEKAQWEKNKICLLCRRRGHSLKNCPDKN
Sbjct: 61  GFKKHPLRVPGMKPGESCFICKAKDHIAKLCPEKAQWEKNKICLLCRRRGHSLKNCPDKN 120

Query: 121 EGTVDKKLCYNCGETGHSLANCSQPLQDGGTKFASCFICNEGGHLSKNCPKNTHGIYPKG 180
           E TVDKKLCYNCGETGHSLANC QPLQDGGTKFASCFICNE GHLSKNCPKNTHGIYPKG
Sbjct: 121 ERTVDKKLCYNCGETGHSLANCPQPLQDGGTKFASCFICNESGHLSKNCPKNTHGIYPKG 180

Query: 181 GCCKTCGEVTHLAKDCPKKGTQVFDRAGVFGYR 213
           GCCKTCGEVTHLAKDCP K TQ F      G R
Sbjct: 181 GCCKTCGEVTHLAKDCPNKATQ-FSAGAYDGNR 212

The following BLAST results are available for this feature:

BLAST of Cucsat.G15279.T3 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9HFF2	3.1e-24	48.51	Uncharacterized protein C683.02c OS=Schizosaccharomyces pombe (strain 972 / ATCC...	[more]
Q8N567	5.4e-21	44.00	Zinc finger CCHC domain-containing protein 9 OS=Homo sapiens OX=9606 GN=ZCCHC9 P...	[more]
Q8R1J3	2.7e-20	43.88	Zinc finger CCHC domain-containing protein 9 OS=Mus musculus OX=10090 GN=Zcchc9 ...	[more]
Q8T8R1	1.9e-18	35.20	CCHC-type zinc finger protein CG3800 OS=Drosophila melanogaster OX=7227 GN=CG380...	[more]
Q04832	1.1e-16	29.25	DNA-binding protein HEXBP OS=Leishmania major OX=5664 GN=HEXBP PE=4 SV=1	[more]

BLAST of Cucsat.G15279.T3 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_031738808.1	1.16e-157	98.59	zinc finger CCHC domain-containing protein 9 [Cucumis sativus] >KGN57377.1 hypot...	[more]
TYK22955.1	1.15e-145	87.88	zinc finger CCHC domain-containing protein 9 [Cucumis melo var. makuwa]	[more]
XP_008439227.1	1.54e-144	95.19	PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103484078 [Cucumis me...	[more]
KAA0033654.1	1.07e-143	87.88	zinc finger CCHC domain-containing protein 9 [Cucumis melo var. makuwa]	[more]
XP_038886312.1	3.24e-143	92.49	uncharacterized protein LOC120076526 [Benincasa hispida]	[more]

BLAST of Cucsat.G15279.T3 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L9S9	5.63e-158	98.59	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G182130 PE=4 SV=1	[more]
A0A5D3DHA5	5.58e-146	87.88	Zinc finger CCHC domain-containing protein 9 OS=Cucumis melo var. makuwa OX=1194...	[more]
A0A1S3AY90	7.45e-145	95.19	LOW QUALITY PROTEIN: uncharacterized protein LOC103484078 OS=Cucumis melo OX=365...	[more]
A0A5A7SR44	5.17e-144	87.88	Zinc finger CCHC domain-containing protein 9 OS=Cucumis melo var. makuwa OX=1194...	[more]
A0A6J1E8U1	3.42e-140	90.61	ATP-dependent RNA helicase glh-2-like isoform X2 OS=Cucurbita moschata OX=3662 G...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (B10) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001878	Zinc finger, CCHC-type	SMART	SM00343	c2hcfinal6	coord: 182..198 e-value: 0.019 score: 21.8 coord: 128..144 e-value: 0.003 score: 26.7 coord: 102..118 e-value: 0.33 score: 14.2 coord: 77..93 e-value: 0.057 score: 18.9 coord: 155..171 e-value: 0.0019 score: 27.4
IPR001878	Zinc finger, CCHC-type	PFAM	PF00098	zf-CCHC	coord: 156..171 e-value: 2.5E-4 score: 21.0 coord: 128..144 e-value: 2.6E-5 score: 24.1
IPR001878	Zinc finger, CCHC-type	PROSITE	PS50158	ZF_CCHC	coord: 156..171 score: 9.669202
IPR001878	Zinc finger, CCHC-type	PROSITE	PS50158	ZF_CCHC	coord: 129..144 score: 9.685684
IPR001878	Zinc finger, CCHC-type	PROSITE	PS50158	ZF_CCHC	coord: 183..198 score: 9.026372
None	No IPR available	GENE3D	4.10.60.10		coord: 71..125 e-value: 2.5E-9 score: 38.7
None	No IPR available	GENE3D	4.10.60.10		coord: 126..177 e-value: 1.8E-12 score: 49.0
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 8..34
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..69
None	No IPR available	PANTHER	PTHR47798	OS04G0555800 PROTEIN	coord: 1..203
IPR025836	Zinc knuckle CX2CX4HX4C	PFAM	PF14392	zf-CCHC_4	coord: 182..198 e-value: 0.59 score: 9.9 coord: 101..117 e-value: 0.014 score: 15.1
IPR036875	Zinc finger, CCHC-type superfamily	SUPERFAMILY	57756	Retrovirus zinc finger-like domains	coord: 122..173
IPR036875	Zinc finger, CCHC-type superfamily	SUPERFAMILY	57756	Retrovirus zinc finger-like domains	coord: 71..120

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cucsat.G15279	Cucsat.G15279	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cucsat.G15279.T3.E1	Cucsat.G15279.T3.E1	exon
Cucsat.G15279.T3.E2	Cucsat.G15279.T3.E2	exon
Cucsat.G15279.T3.E3	Cucsat.G15279.T3.E3	exon
Cucsat.G15279.T3.E4	Cucsat.G15279.T3.E4	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cucsat.G15279.T3.C4	Cucsat.G15279.T3.C4	CDS
Cucsat.G15279.T3.C3	Cucsat.G15279.T3.C3	CDS
Cucsat.G15279.T3.C2	Cucsat.G15279.T3.C2	CDS
Cucsat.G15279.T3.C1	Cucsat.G15279.T3.C1	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cucsat.G15279.T3	Cucsat.G15279.T3-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0030042	actin filament depolymerization
cellular_component	GO:0015629	actin cytoskeleton
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding
molecular_function	GO:0003779	actin binding
molecular_function	GO:0004386	helicase activity