Cucsat.G1491.T5 (mRNA) Cucumber (B10) v3
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.CCATCGTATTCCATATAATACCTCTAAACGATCGTATATAAAAAAATATTGAAAAAAAATGATCGTATAGAGAAAGAATAACCTTGTTTTCCAAATATCATCCATTTCAAATTCTTTTTAAATATTTTGTAGGTTTTGTTGTATTTTTTAAAAAATCCCTTAGAAAATAAAATAAAATAAAGTGTAAGGGCTAAAAAGTGATTTCCAAGAAATAAATTTATACGACCGAATGAAGGGAAAGAAAATCCCCTTTGGCGGTGAAGATAATGTACGCAACAAAGTTTGAATATAAAAAAGATAAATAAGTAAAAACGAGCCCTAGATTTTGTATAAAAGGGGACTTGCAATTCACAACTTGTAAATTTTCTCCTCAAGAACTCTTAGATCGTGAGTAGAGAATATTCTCGAGCATCGTTTCTTTTCTTCTGGTTCAGAATAATTCCCTTCAGCATCTCTGTTCATTTCAAACTTTTGATTGATTTTGTGCTGAACAACAAACTATTTGGGGTTCTTGTGTAATTTAAGAAGAGCGAGGAAGATCGGAAGGACAAACCCCTCGTGTACTCGCTATGTCTTCTTCCGGAATCTCTTCCCAAAGCTCCGAATTGACAGATGCGGTTCAAGGACTAGTTCTTTGCGATCAGGTTTTATTATTTATCTATTCATTTTCGAAGTTGATGTACTTTTACGCGCTTTCTTTATTCAAGAGAATCTTGGGGGTGTGTGAGAAATGGTTGTTTTCGATTTGTGTTGAGAGTTCTTATTGATTTAGTCTTGGTGTCATTTGCTTTTCAAGATTTGCGTTTCTTGGGGGCTAATTAAATAAGTCAGAGATTGTTGGGTTAGTCTTGTTTTTTTCATCATCGAGATTATGGACGTCGGGGTGATTGTTTTCTGCGTTTGGATATCTAGGGGGAATATGGTTCAATCGAATTGAATTGATTTTTGTGGTTGGTTGTATGGGTTTGGGGAATCATAATAATCAGAAGCTATTGTTTGTGTTCACCCGTTTGTCAGTAATGGTTGTTTTTCTTTCGCGAAATTGGTTGGTCGCCTGGGAATGAATTTCTTTATTCTTTAAAGAAGATAGTTCTTTCCTCTCTTTGAGTTCGAGTTGCATAGCCATGATTTTGTCTAAGTGTCTGTTTTCTAATTTGCTGGACTTGTATGTTTAGTTGGAAATGTAGATCTTTCTTGCTTTTGGTTCAGAAGAATTCTTTAGTCTCTCTCTCTCTTTTTTATAAGTTTTGATTTGTGCTGAACAACTATTTGGGTTCTGTGTTTTTTAGAGCGATAAAGATCGGAGGGCTATGGCAACTTCTTCCGGAATCTCTATCCAGAGCGCTGAAATTTCAGATGCTGTTCAAGAACAAGTAACTTGCGACCAGGTTTTATCTATCTATTCATTTTCGAAGTCGATCTACTTTCGCGCACTTTCTTTTTCCTAGAGAATCAAGGGCGTAAAACTCTGCTAGGAAATGGTTGTCTACAATTTGTTTTGATAGTTCTTATTGGAAATATAGTGTTCTCAAATCTGAAATCGTTAATCTAGTTTTGTTGCCCTTTGTTTTTCAAGATCTGTAACCGTTGGGCTAATCTTGTTTCTTTCATTGTCAAGATTACGGATATCAGGCCCTGCGATATAATATCTAGGGAGAATATGGTTTATTTGAATTGAATTTGAGATTGGTTGTATGGCTAGATACTATTGCTTATGTTCATCTTGTTTTTCTCTTGCGTGTGCTTGTTTTTCTTTATTCTATCAGGAAGATTTCCTCTCCTTCAGTTAGAGCTGCATATCTATGATTCTGTTTGATTGCTTGTTTTCGAATATTGAATATTCACTCCATACTTCAAGGATCTCTTATTTGGTGGATTTGTATGTTTAGTTGGAAATGGGAAAGAAAGTAGAGATTCAAGGAACGGGGCATGGTAGTCACGATGGGGCTTGTGCAATCTGCTTAAATAAGATAGCACTTCAAGAAACTGCTTTAGTAAGAGGCTGTGAGCACGCCTATTGGTTTGTTCCTATCGATTCATCTTTCATCTACTTATTAATATTTTCTATGGCATGACTTATTCATTTCGTTGTCGCTCTATGCTTGTATTGGAGATGGAGTTTTAAGTTGTTGCGAACGTATTCCTGGGAGTCCGCTAAACTTTGTAGGAGAAAATTCACTGTATCCATATTGCCTTTGGTGCAATGTTTCTAATTGTACTTGAGGTTGCTCGGATTTAATTGGAAGAGGTATGCTGTTTTAGATTTATAACCAAAACATCTCGGAGTTATGGAGTCGATAGATAATTTGTTATTTAAAAGATACATCATGAACTAGCCGAAGTCTTGTCTTATATAGTTTATTGATCGTTGAACTTAAAATGCTTGCTTTGTGGCATTTGGACCAAATTAGTTTGGATAAGGTGTTTGTATTCTGCATATGTTAGATTGGCAACTGCTGTTTAAATTATTATGACATGTTGGACACGCTTGTTGAACTTGACACATCAAACACCGTGTTGAATATTTGATGGGTACAAAGTACAATAGACACAGAATGAAGCACATATTGATGTTGCATTTTGGATTTTTGAACACATGTTGGAACAATTATTAGCCATTTGGATATGGATGTTTGAAAAATGGCATGTCAGCCTTTTTGGGAAGCGAGCTACCCTTTCAACTCCTCCAAATTATGTATTTACATGCTTGGATGCATTTTATTTTCTTTATTCTTTCTTTTACTTTCATGAAGTGCAACTTGCATCCTTCGATGGGCATCATACACTAAGAAGCCGACTTGTCCACAATGTAAACATCCATTTGAGTTCTTGATCGTTCATCGTTCTCTTGATGGGAGGTTCGTCCATTCATCATTCTATGGAGATATTTTATAGATTATAGTTTAGATTTGTGAACCCTGTTATCTTTTTAAATTACTGTTCTTATTATATATTTCCTTTGCATTGTTAGCATCCACGACTACATGTTTGAGGAGAGTGTATGCCTGCTTCTGAGAGCTTCGTGGTATAAACCTCCAATCATTGAAGAACGGGAGGAAACATATGATGATCCTGAGGATGACCAATACTATCCTTATGAGGATGATGATGAAGAGTTAGAGGATGCTTACTTGGGTGAATCACCATCTCTTCGCATTGGGAATCGAAGGTGGGGATACAATGGTTATGTGAGGGCAGGTAGACAGGAAGCCCGACCAGTTCTTAGGCAGGAGTTTACTGGACCTAGTTCATCGAGGGAGCCCGTAACAAAACAGGCTTCTTCCAAGGACAAAACAGGCCGACGTGCTAAAAGGGCCTTGAAACGAGAAGCTGCAGATAAAGCAGCAGCAGCCAAGCATCAAGAGCATCTGGCTAGGTTTGGCCGGAAGTGATTTTTATGTTTAAAACTCCTGTATAGAACTAAGCTCTGCTCTTTTCTATCTGTACAGCTCTTTGATTCAATCTTCTTTCCTAGCTGATGCACCTTACTAAAGGCTGGTAGCTCCCAATGAAAAACTAAGATAGAGATCATAAATGCTGATAAGGTTGTACATGAGGCCAGCGAATTCTTTGTATAAAATTTGTCTTTTCAGGTGAACAACTGAAGATGGCCTACATGGGTTTGGGTTCGGGTTGAGTTGGTGATCGATTTGTTTTTGCTTTTGTTTTTAATTTTATTTTGAGTAATTTTCTAATGTTAAAAAATTGTGAAATCAAATAGGAAAGAAAGCTCTCCTTCAAGGTCCAACACTGCAATTACAAGGGA ATGTTTGAGGAGAGTGTATGCCTGCTTCTGAGAGCTTCGTGGTATAAACCTCCAATCATTGAAGAACGGGAGGAAACATATGATGATCCTGAGGATGACCAATACTATCCTTATGAGGATGATGATGAAGAGTTAGAGGATGCTTACTTGGGTGAATCACCATCTCTTCGCATTGGGAATCGAAGGTGGGGATACAATGGTTATGTGAGGGCAGGTAGACAGGAAGCCCGACCAGTTCTTAGGCAGGAGTTTACTGGACCTAGTTCATCGAGGGAGCCCGTAACAAAACAGGCTTCTTCCAAGGACAAAACAGGCCGACGTGCTAAAAGGGCCTTGAAACGAGAAGCTGCAGATAAAGCAGCAGCAGCCAAGCATCAAGAGCATCTGGCTAGGTTTGGCCGGAAGTGA MFEESVCLLLRASWYKPPIIEEREETYDDPEDDQYYPYEDDDEELEDAYLGESPSLRIGNRRWGYNGYVRAGRQEARPVLRQEFTGPSSSREPVTKQASSKDKTGRRAKRALKREAADKAAAAKHQEHLARFGRK Homology
BLAST of Cucsat.G1491.T5 vs. NCBI nr
Match: XP_011657615.1 (E3 ubiquitin-protein ligase RNF13 isoform X2 [Cucumis sativus]) HSP 1 Score: 265 bits (676), Expect = 1.79e-87 Identity = 135/135 (100.00%), Postives = 135/135 (100.00%), Query Frame = 0
BLAST of Cucsat.G1491.T5 vs. NCBI nr
Match: XP_004140197.1 (uncharacterized protein LOC101206609 isoform X1 [Cucumis sativus] >KGN48101.1 hypothetical protein Csa_003121 [Cucumis sativus]) HSP 1 Score: 265 bits (676), Expect = 5.13e-87 Identity = 135/135 (100.00%), Postives = 135/135 (100.00%), Query Frame = 0
BLAST of Cucsat.G1491.T5 vs. NCBI nr
Match: TYJ96112.1 (E3 ubiquitin-protein ligase RNF13 isoform X2 [Cucumis melo var. makuwa]) HSP 1 Score: 243 bits (619), Expect = 2.34e-78 Identity = 129/136 (94.85%), Postives = 131/136 (96.32%), Query Frame = 0
BLAST of Cucsat.G1491.T5 vs. NCBI nr
Match: XP_016900768.1 (PREDICTED: uncharacterized protein LOC103491476 [Cucumis melo]) HSP 1 Score: 233 bits (594), Expect = 1.65e-74 Identity = 124/131 (94.66%), Postives = 126/131 (96.18%), Query Frame = 0
BLAST of Cucsat.G1491.T5 vs. NCBI nr
Match: XP_038901113.1 (E3 ubiquitin-protein ligase RNF13 isoform X2 [Benincasa hispida]) HSP 1 Score: 228 bits (580), Expect = 4.66e-73 Identity = 118/135 (87.41%), Postives = 123/135 (91.11%), Query Frame = 0
BLAST of Cucsat.G1491.T5 vs. ExPASy TrEMBL
Match: A0A0A0KK15 (RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G431760 PE=4 SV=1) HSP 1 Score: 265 bits (676), Expect = 2.48e-87 Identity = 135/135 (100.00%), Postives = 135/135 (100.00%), Query Frame = 0
BLAST of Cucsat.G1491.T5 vs. ExPASy TrEMBL
Match: A0A5D3B8D7 (E3 ubiquitin-protein ligase RNF13 isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold182G00750 PE=4 SV=1) HSP 1 Score: 243 bits (619), Expect = 1.13e-78 Identity = 129/136 (94.85%), Postives = 131/136 (96.32%), Query Frame = 0
BLAST of Cucsat.G1491.T5 vs. ExPASy TrEMBL
Match: A0A1S4DXR5 (uncharacterized protein LOC103491476 OS=Cucumis melo OX=3656 GN=LOC103491476 PE=4 SV=1) HSP 1 Score: 233 bits (594), Expect = 8.01e-75 Identity = 124/131 (94.66%), Postives = 126/131 (96.18%), Query Frame = 0
BLAST of Cucsat.G1491.T5 vs. ExPASy TrEMBL
Match: A0A5A7V3C1 (E3 ubiquitin-protein ligase RNF13 isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold212G001490 PE=4 SV=1) HSP 1 Score: 226 bits (576), Expect = 6.84e-72 Identity = 123/131 (93.89%), Postives = 124/131 (94.66%), Query Frame = 0
BLAST of Cucsat.G1491.T5 vs. ExPASy TrEMBL
Match: A0A6J1JFP2 (uncharacterized protein LOC111484597 OS=Cucurbita maxima OX=3661 GN=LOC111484597 PE=4 SV=1) HSP 1 Score: 218 bits (556), Expect = 1.29e-69 Identity = 115/133 (86.47%), Postives = 123/133 (92.48%), Query Frame = 0
BLAST of Cucsat.G1491.T5 vs. TAIR 10
Match: AT5G19430.1 (RING/U-box superfamily protein ) HSP 1 Score: 128.3 bits (321), Expect = 4.8e-30 Identity = 83/148 (56.08%), Postives = 104/148 (70.27%), Query Frame = 0
BLAST of Cucsat.G1491.T5 vs. TAIR 10
Match: AT5G19430.2 (RING/U-box superfamily protein ) HSP 1 Score: 128.3 bits (321), Expect = 4.8e-30 Identity = 83/148 (56.08%), Postives = 104/148 (70.27%), Query Frame = 0
BLAST of Cucsat.G1491.T5 vs. TAIR 10
Match: AT5G12310.1 (RING/U-box superfamily protein ) HSP 1 Score: 116.3 bits (290), Expect = 1.9e-26 Identity = 77/150 (51.33%), Postives = 98/150 (65.33%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucumber (B10) v3
Date Performed: 2021-10-25
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
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