Cucsat.G13681.T39 (mRNA) Cucumber (B10) v3

Overview
NameCucsat.G13681.T39
TypemRNA
OrganismCucumis sativus L. var. sativus cv B10 (Cucumber (B10) v3)
Descriptionthylakoid membrane protein TERC, chloroplastic
Locationctg184: 863424 .. 868666 (-)
RNA-Seq ExpressionCucsat.G13681.T39
SyntenyCucsat.G13681.T39
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
TGAAGTTGAAACGAAGCTCCAAAGAACAAAAAAAGAAAATTATGGATAAGATATAGTGAGTCCTCAGTCTCCGCTATTCGAAGCGGTGGAAATGGCTTCAATCATCCACAACGGCCTTCAAATTTCTTCGAAGCTCGATTCTCCATGGCCTAAGGTTTCATCACATCTTCATTTTCATCCTCGAGCATGGGTTGAGGCTGTCCACAATCACGTTCCTCAATTTTCCCCAGGTTCAACTCTTCCCTTTTCTCTCCACTGTGAAGATCGGCGTAATCTGATTGAGTAATGTATGCATTCGTATTCGTAGTTATCCTCAATTGCCGTCCTTCTCCGCGCTCTTTGGTTCGATGCTCCAGTCGAATCGAGAGGGAAGGCGATCCGTCTACTGCAGGTCAGTGAGTGTTTCCGCGAGATTTTTCTTCTTCAAGTTTAATGGTGATATTCGTACATGTCTGTTTCAATTAGAGGTGGATAATAGCGAGGCATTTTTCAATTGTGGTTACTTGTTCATCATATGGTAACAGTGAGACGAATTTGCAGAAGCCAATAGGACGTCTTCCGTCCGAGGAACGATTGAGGGGTCTGAAAGTAAAGTTTCTTCTATTAGAAATGTTGCTCTATGTGTAAGCACTTGCTGGGCTTTAATTTTTTAATGTAATCAAACAGTATGGCTGTTCGTTGTTAATTGTTTTGCTACTGTTTATTCTCTGTTCTAGGTTGCTACTGCCGTGGCATTTGGTATTGGGGTGGGTTTGAAAGATGGAGTTGGCAAGGCATCTGAATTTTTTGCCGGGTATGTTACATACTACTTTTTACAATCGTCTCTCCAGTAAACAGACGATTTCTTCGGTTGTCTGTCATTTTCCTTTAGCAAGCTGATTGATAGGATGACAAATGGGATTGACCCTAATCAAATACGATTTATAAATTCATTGGTAATTGGGGAATAAAAAATGTCGTATAGGGAAGCATTATGCAGAATGCGACTTGCACTGCAGTCCCATACTGTTTTGGTTACATTGGTTCTTGGATTTGTGGCTTATGCTTAGCTTTTAAGGTGAACTGTGCATATTATCTAGGACAAGAGCGCATGTGCACATTTCATATTGGTACAAGTACAAGCTTAGTTTTGAACTTTGTAGTCTGTAACATTAATGTAGAGATTTGGAAGATCCAAACATACCTTACCTTGTATTGTAGAACTCCTCACTTTATTTTACTTCTTTATGCTCTGTCAATGTCTGATTTTATGACAATTTTCAGGTATCTTCTGGAGCAAAGTTTGTCAGTTGACAATCTCTTTGTCTTTGTTTTGATTTTCAAATACTTTAAAGTGCCAACGGAGTATCAGGTGCTAAGTTTGTCCAAAGCTATGACTAAATTGCTAGTTAGCATGCAAACTATTGCAATTACTTTGCTTTCCTGAATAATTTAACGTCTATGCATGTTGATGATTTTTTGGTTTTGAAATATAGAATCGGGTGCTTACTTATGGTATTTCTGGTGCAATTGTCTTTCGTCTAACAATCATACTTCTGGGAGCAGCCACTCTGCAGGTAACTTCTCTTCCTGTTGTATTCCAGTTTGCTCATATAGTCTATCTGAGAATTGTATCTACTATTTCAGAGATTTGAGGCTGTGAACCTGCTTCTGGCTGCTATACTTCTATTCTCATCATTTCAGGTTTTTGTTCTAAGCTTTTTACTTTTAAATTTCCATATGTTTTCTGATGATCAATTATTAGGACCTTTTAGCTTAAATGTATCATGAATTCTGCAGCTGTTTGCGAGCAATGAAGAGGATGACGGCGATCTATCAGACAACTTTGTAGTAAAGACGTGCCAACAATTAATTCCTGTTACAGGTATTTTGAAATTAGAGTATATTTGTTTTTGTGCTGGAGTATGTACTCGTGATAAGTGCTTGATCATTTATTCTATTTTCTTAACACATTTATTAGTTCAGAGGAAGTAAAGTAGACTCCTTTGCAACTTTTGTATATTTGCTACATGAAAAATGGTGAACCTCATTACTATGATGATCAACTTTCCTTAAATCACAGTCCATATTTGCTTAGGTAACTCATGAAGAAATTATTAAGAGGATTTATCAAAAAATAAACGGGAAAAGAATATTTTCATGCAATATAATTGAAATGTTTTTTAGTTATACGAGGAAAACACTAAATAGTGTATGAAAGTGTTACTTTTCCAGTCTGTTTGGTCGGCTTACTCTCAAATGGGACATTTGTATCTCTCTCCCTCTCTCTCTCTTTTAATGGTTATTTTTTTCTCTTTTTATGCTCATGGTTTAGATATTACTTTCCCTGTTATATTGTTGCAGCAACCTATGATGGGGATCGCTTTTTTACACTTCAGGAGGGTGTGAAGAAAGTAAGTTATGATAGACTCTACTGTAGCTTTAGGAATACCATTGATGACCTTTCCTCATGTTGAGCATGAAATAAGAGAAGATTCTTTTCGAGAAGCATGTCACATTGTTCTATTGGAAGCTTATAAATCTGTCATGTAAACTTAAATTTGACATGATTTCTAACAGGTCTCGAACATTTTGGACAGGCAACACCTTTACTGCTCACCATAGCTGTTATTGAGCTCAGTGATATAGCATTTGCAGTACGTTTTGCACGACTCAATTATGTTATATATGCATCAGGATGTTATTTACTTCACCTTTTTAGTTTATGGAAATGCTCATTCAACCTTTATTTTCTTGAACATGGTGCTAGGTTGATTCAATACCTGCCGTTTTTGGTGTTACAAGGGACCCTTTCATAGTAATTACGTCAAATTTTTTTGCCATTTTAGGTAACATACCCTTCTTCGAATTAACCTCTTGGATAAATGGATCCTAACAACATTGACATTGATTTTCTTCTTCTTTTCTTTACATCACTTCAATCATGAAGTAATTTGCCAACATTTGTTTCATCTAATGACTCACTCAAATATTAAATATGGGAACATTAGTGGCTAATGGGTTCAAGAGTTTTCGTAGTAGTTAAATAGAAAAGTTCTATCTTTTTCTTTTCTTGAAAAGGAAACATTAAATCAAAAGATCTATCGTGGAAGATGTGTCAGGATACTGTATTTATTGTTCATTTGTTTCCTTTAACAAGTTGAGAACTTTGGTATGTATCCAGTTGTTCATTAAATTTTTTGGAGATGCATAATGACCACCATTTTTGTGTGCTACAGGTTTGCGGTCCCTATTCATTCTTGTAGCTGATGGGATGTCAGAATTGGAGTACTTACAGGTAAAATTTTAGACGTAAAAAATGAAGAGCATGTCAAGTTCTATCATTCTTGTATCTCACTTTTCTCTTACCTGGTGGATGCTATAGTAAATGTTATTAATATTATTTTGTAGTCCTCAATTAGGTATAATCAACATTATTTCAAAATCTCATTTGTTACAATATTTTCTATTTCCTAGAGTTTTTACTATTTTTACATTCATCATTTTTTTTATTCTTTGCTACAATTTTTCTTATTTTACGTTCATAATTTTTTATTCTTTGCTCCAATATTCGCTATTTACTTTACAAATTAAAATAGTTTACACTTCAAACAAATACTATTTTAAATCAAACCAAAATAATCTATACCCCAAACATAAACTATTATTACCCAATTGTATTAACATATAACTATAATAACTAACTCCTGCTCCAAATGTCCCTTGAAAGTCTTAAAGCACGTCCACTTTAGGACTCGGTTGATTTAAATAAAATGGTGAAATTGAAAACTCAATTAAAAAATATTTTTGGTGATCATATAATTGTGGACAAATACTATGGCCGTACTGTGCAAGCCTTTTTGGTGTTTTCCAAGTCTTACAAATGGCTCAGTTATTGCTCTCCTATAAACGTGCACTGAAGGAAATTTTCTCCATATTTTCAATGTCCTTCCAGCCTTCCATTGGCGTTGTTCTAGCATTTATTGGGAGCAAGATGATCCTTGATTTCTTCGGTGAGCATGCTTTTGTCCATTTGAAATGTCAAATCTGTTATGACACCTATATACATTTTAAAATTCCAGTATTCATTGACCTCACTCTTCATGCAGGATTCCACGTTCCAACTGAGGCATCTCTTGGATTTGTCGCAATAAGTCTGAGCACTGGTGTTCTCTTGAGTCTATTGAAGAAGGCTGATTGATCAGAAAAACAGAAAGAGAGGGTGTTCGGCTTTAATCGAAGTAAGTTATTGCTTCTTCATTTTGGTAAAAAAGAAAAGGCCTATCAAGCTTCTAATTGAAAAATTAACAACTTAAGTGTACCGTTTCAAGCTTCTAAATAAAAAATTTAGGCTGTTTGGTAACCATTTTACTTTTAGTTTTTGAAAAGTAATCCTGTAGACACCCCTTAAATTTTTTGTTTTCTTATCTATTTTTTATCAATGTTTTAAAAAACCAAAGCCAAAATTTGAAAACTATGGCTTGTTTGGTAACCATTTCATTTTTCATTTTTTAAAAATTAAGCCTATATTTCCCCATTTTCTTGTACTCTTTTTCGTAAGTACAAGAGTGGAATTATTAGCCAAATCTAAAAACAAAGATAAACTTTTAAAAAATGGTTTACTTAATTTTCAATAGTCTGGTTTTTAAAAACATAGGTTGGAAGTACATAATGAAACAAGAAACTTAGAGGTGGAGGTGGAAGGAAAGGAGTGTCTGTAAGCTTAAAACTAAAAACCAAAAATCAAGGGTACAAAACGGGGCCTATAAAATTAGTTGAAACGTTTTTCTTTTCTTGAATTTGGTGTATTTAACTCTTATATTCAAGTCTAAAGATATGAGGAAGGGAGGCATAGAAATTATATGCAAATCATAGTAAGAACACTTGAGGAAACAGGGTTAACTCTTCAAAACTCAACCGCTCTTGAATGTGAATTGGTAGAGTAGGGAGGCATAGAAATTAGAGAGTGAAGCTTCTGATTCTGTCATTGTCAAAATGTTGGACGAAAAATAAACTAGAATAAAATTTAGAGCAAGTGTCCATAACTAAATTATTAAAGGTTAGTTTAGCTCAACAGTAATTGACATGACTCACCAACCTGGAGGTATAAAGTTCGATCTCTCATCTTAAGTTGTTATACTAAAAAAACTAACATTCTTTCTATTACTAAATGTTAGGATTTCCTACTTTCTAATCGTTATTTTTCATGATTGCCAGAATTGTTTGTTTAAAATTGTCATTTCACTATTGACTGGAGCCACGGT

Coding sequence (CDS)

ATGTATGCATTCGTATTCGTAGTTATCCTCAATTGCCGTCCTTCTCCGCGCTCTTTGGTTCGATGCTCCAGTCGAATCGAGAGGGAAGGCGATCCGTCTACTGCAGAAGCCAATAGGACGTCTTCCGTCCGAGGAACGATTGAGGGGTCTGAAAGTAAAGTTTCTTCTATTAGAAATGTTGCTCTATGTGTTGCTACTGCCGTGGCATTTGGTATTGGGGTGGGTTTGAAAGATGGAGTTGGCAAGGCATCTGAATTTTTTGCCGGGTATCTTCTGGAGCAAAGTTTGTCAGTTGACAATCTCTTTGTCTTTGTTTTGATTTTCAAATACTTTAAAGTGCCAACGGAGTATCAGGTGCTAAGTTTGTCCAAAGCTATGACTAAATTGCTAGTTAGCATGCAAACTATTGCAATTACTTTGCTTTCCTGA

Protein sequence

MYAFVFVVILNCRPSPRSLVRCSSRIEREGDPSTAEANRTSSVRGTIEGSESKVSSIRNVALCVATAVAFGIGVGLKDGVGKASEFFAGYLLEQSLSVDNLFVFVLIFKYFKVPTEYQVLSLSKAMTKLLVSMQTIAITLLS
Homology
[Close]
BLAST of Cucsat.G13681.T39 vs. ExPASy Swiss-Prot
Match: F4JZG9 (Thylakoid membrane protein TERC, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=TERC PE=1 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 1.9e-21
Identity = 68/145 (46.90%), Postives = 88/145 (60.69%), Query Frame = 0 

Query: 11  NCRPSPRSLVRCSSRIEREGD--------PSTAEANRTSSVRGT---------IEGSESK 70
           N R S    + CS  I++E +        P   + N T+S   +          +  E+ 
Sbjct: 54  NRRLSHLPPIACSRGIDQEDEEKESRELLPHKNDENATTSRSSSSVDSGGLKDYQQEETY 113

Query: 71  VSSIRNVALCVATAVAFGIGVGLKDGVGKASEFFAGYLLEQSLSVDNLFVFVLIFKYFKV 130
            +S + VALCV TAVAFGIG+GLK+GVGKASEFFAGY+LEQSLSVDNLFVFVL+FKYFKV
Sbjct: 114 KTSFKTVALCVGTAVAFGIGIGLKEGVGKASEFFAGYILEQSLSVDNLFVFVLVFKYFKV 173

Query: 131 PTEYQVLSLSKAMTKLLVSMQTIAI 139
           P  YQ   L+  +   +V   T+ +
Sbjct: 174 PLMYQNKVLTYGIAGAIVFRFTLIL 198

[Close]
BLAST of Cucsat.G13681.T39 vs. ExPASy Swiss-Prot
Match: P96554 (Uncharacterized membrane protein STKORF319 OS=Myxococcus xanthus OX=34 PE=3 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 1.5e-07
Identity = 30/58 (51.72%), Postives = 39/58 (67.24%), Query Frame = 0 

Query: 61  ALCVATAVAFGIGVGLKDGVGKASEFFAGYLLEQSLSVDNLFVFVLIFKYFKVPTEYQ 119
           AL V+ A+ FG GV  K G     +F  GYL+E+SLSVDN+FVFV+IF   ++P  YQ
Sbjct: 48  ALWVSLALVFGAGVWWKFGPEPGLQFITGYLIEKSLSVDNIFVFVVIFSALRIPALYQ 105

[Close]
BLAST of Cucsat.G13681.T39 vs. ExPASy Swiss-Prot
Match: Q92GA4 (Uncharacterized membrane protein RC1219 OS=Rickettsia conorii (strain ATCC VR-613 / Malish 7) OX=272944 GN=RC1219 PE=3 SV=1)

HSP 1 Score: 48.9 bits (115), Expect = 5.5e-05
Identity = 22/52 (42.31%), Postives = 36/52 (69.23%), Query Frame = 0 

Query: 67  AVAFGIGVGLKDGVGKASEFFAGYLLEQSLSVDNLFVFVLIFKYFKVPTEYQ 119
           A  FGI V    G   A E++  +L+E+++S+DN+FV  +IF++FK+P +YQ
Sbjct: 44  ACLFGIYVYYNTGADHAREYYTCFLIEKAMSLDNIFVISIIFQFFKIPWQYQ 95

[Close]
BLAST of Cucsat.G13681.T39 vs. ExPASy Swiss-Prot
Match: Q68VW2 (Uncharacterized membrane protein RT0774 OS=Rickettsia typhi (strain ATCC VR-144 / Wilmington) OX=257363 GN=RT0774 PE=3 SV=1)

HSP 1 Score: 47.4 bits (111), Expect = 1.6e-04
Identity = 19/49 (38.78%), Postives = 36/49 (73.47%), Query Frame = 0 

Query: 70  FGIGVGLKDGVGKASEFFAGYLLEQSLSVDNLFVFVLIFKYFKVPTEYQ 119
           FGI +    G+  A E++  +L+E+++++DN+F+  +IF++FK+PT YQ
Sbjct: 47  FGIYIYHNMGLDHAREYYTCFLIEKAMALDNIFIISIIFQFFKIPTTYQ 95

[Close]
BLAST of Cucsat.G13681.T39 vs. ExPASy Swiss-Prot
Match: P9WG92 (Uncharacterized membrane protein MT2795 OS=Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh) OX=83331 GN=MT2795 PE=3 SV=1)

HSP 1 Score: 47.0 bits (110), Expect = 2.1e-04
Identity = 27/54 (50.00%), Postives = 35/54 (64.81%), Query Frame = 0 

Query: 61  ALCVATAVAFGIGVGLKDGVGKASEFFAGYLLEQSLSVDNLFVFVLIFKYFKVP 115
           A  V  A+ FGI V +  G   A E+FA YL +++LSVDNLFVF++I   F VP
Sbjct: 43  ATFVGIAILFGIAVVVFGGSELAVEYFACYLTDEALSVDNLFVFLVIISSFGVP 96

[Close]
BLAST of Cucsat.G13681.T39 vs. NCBI nr
Match: XP_004142102.1 (thylakoid membrane protein TERC, chloroplastic [Cucumis sativus] >KGN54196.1 hypothetical protein Csa_018172 [Cucumis sativus])

HSP 1 Score: 215 bits (547), Expect = 3.20e-66
Identity = 111/111 (100.00%), Postives = 111/111 (100.00%), Query Frame = 0 

Query: 8   VILNCRPSPRSLVRCSSRIEREGDPSTAEANRTSSVRGTIEGSESKVSSIRNVALCVATA 67
           VILNCRPSPRSLVRCSSRIEREGDPSTAEANRTSSVRGTIEGSESKVSSIRNVALCVATA
Sbjct: 47  VILNCRPSPRSLVRCSSRIEREGDPSTAEANRTSSVRGTIEGSESKVSSIRNVALCVATA 106

Query: 68  VAFGIGVGLKDGVGKASEFFAGYLLEQSLSVDNLFVFVLIFKYFKVPTEYQ 118
           VAFGIGVGLKDGVGKASEFFAGYLLEQSLSVDNLFVFVLIFKYFKVPTEYQ
Sbjct: 107 VAFGIGVGLKDGVGKASEFFAGYLLEQSLSVDNLFVFVLIFKYFKVPTEYQ 157

[Close]
BLAST of Cucsat.G13681.T39 vs. NCBI nr
Match: XP_008447276.1 (PREDICTED: thylakoid membrane protein TERC, chloroplastic [Cucumis melo] >XP_008447284.1 PREDICTED: thylakoid membrane protein TERC, chloroplastic [Cucumis melo] >KAA0047314.1 thylakoid membrane protein TERC [Cucumis melo var. makuwa])

HSP 1 Score: 209 bits (532), Expect = 5.82e-64
Identity = 108/111 (97.30%), Postives = 108/111 (97.30%), Query Frame = 0 

Query: 8   VILNCRPSPRSLVRCSSRIEREGDPSTAEANRTSSVRGTIEGSESKVSSIRNVALCVATA 67
           VILNC PSPR LVRCSSRIEREGDPSTAEANRTSSVRGTIEG ESKVSSIRNVALCVATA
Sbjct: 47  VILNCHPSPRPLVRCSSRIEREGDPSTAEANRTSSVRGTIEGPESKVSSIRNVALCVATA 106

Query: 68  VAFGIGVGLKDGVGKASEFFAGYLLEQSLSVDNLFVFVLIFKYFKVPTEYQ 118
           VAFGIGVGLKDGVGKASEFFAGYLLEQSLSVDNLFVFVLIFKYFKVPTEYQ
Sbjct: 107 VAFGIGVGLKDGVGKASEFFAGYLLEQSLSVDNLFVFVLIFKYFKVPTEYQ 157

[Close]
BLAST of Cucsat.G13681.T39 vs. NCBI nr
Match: XP_038883780.1 (thylakoid membrane protein TERC, chloroplastic isoform X1 [Benincasa hispida])

HSP 1 Score: 199 bits (507), Expect = 3.37e-60
Identity = 102/111 (91.89%), Postives = 105/111 (94.59%), Query Frame = 0 

Query: 8   VILNCRPSPRSLVRCSSRIEREGDPSTAEANRTSSVRGTIEGSESKVSSIRNVALCVATA 67
           VILNC P+PRSL+RC SRIEREGDPSTAEANRTSSV GTIEG ESKVSS+RNVALCVATA
Sbjct: 47  VILNCHPAPRSLIRCGSRIEREGDPSTAEANRTSSVPGTIEGLESKVSSLRNVALCVATA 106

Query: 68  VAFGIGVGLKDGVGKASEFFAGYLLEQSLSVDNLFVFVLIFKYFKVPTEYQ 118
           VAFGIGVGLKDG GKASEFFAGYLLEQSLSVDNLFVFVLIFKYFKVP EYQ
Sbjct: 107 VAFGIGVGLKDGPGKASEFFAGYLLEQSLSVDNLFVFVLIFKYFKVPMEYQ 157

[Close]
BLAST of Cucsat.G13681.T39 vs. NCBI nr
Match: XP_022143940.1 (thylakoid membrane protein TERC, chloroplastic isoform X2 [Momordica charantia])

HSP 1 Score: 180 bits (457), Expect = 9.54e-53
Identity = 95/122 (77.87%), Postives = 102/122 (83.61%), Query Frame = 0 

Query: 8   VILNCRPSPRSLVRCSSRIEREGDPSTAEANR-----------TSSVRGTIEGSESKVSS 67
           V+LNC  +PRSL+RC SRIE+EGDPSTAEANR           T SV GT EG ESKVSS
Sbjct: 47  VVLNCHRAPRSLIRCGSRIEKEGDPSTAEANRSQSSGEKEYNRTYSVSGTTEGFESKVSS 106

Query: 68  IRNVALCVATAVAFGIGVGLKDGVGKASEFFAGYLLEQSLSVDNLFVFVLIFKYFKVPTE 118
           +RNVALCVATAVAFGIG+GLKDG GKASEF+AGYLLEQSLSVDNLFVFVLIFKYFKVP E
Sbjct: 107 VRNVALCVATAVAFGIGLGLKDGPGKASEFYAGYLLEQSLSVDNLFVFVLIFKYFKVPIE 166

[Close]
BLAST of Cucsat.G13681.T39 vs. NCBI nr
Match: KAG7027292.1 (Thylakoid membrane protein TERC, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 174 bits (440), Expect = 1.22e-52
Identity = 92/118 (77.97%), Postives = 101/118 (85.59%), Query Frame = 0 

Query: 8   VILNCRPSPRSLVRCSSRIEREGDPSTAEANRTSSVRGTIEGSESKVSSIRNVALCVATA 67
           VI+NCR   RSL+R  SRIEREGDPSTAEA++        EG+ESKVSSIRNVALCVA+A
Sbjct: 47  VIINCRRGSRSLIRRGSRIEREGDPSTAEADKA-------EGTESKVSSIRNVALCVASA 106

Query: 68  VAFGIGVGLKDGVGKASEFFAGYLLEQSLSVDNLFVFVLIFKYFKVPTEYQVLSLSKA 125
           +AFG+GVGLKDG GKASEFFAGYLLEQSLSVDNLFVFVLIFKYFKVP EYQVL+  KA
Sbjct: 107 LAFGVGVGLKDGAGKASEFFAGYLLEQSLSVDNLFVFVLIFKYFKVPIEYQVLTFCKA 157

[Close]
BLAST of Cucsat.G13681.T39 vs. ExPASy TrEMBL
Match: A0A0A0L220 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G293060 PE=4 SV=1)

HSP 1 Score: 215 bits (547), Expect = 1.55e-66
Identity = 111/111 (100.00%), Postives = 111/111 (100.00%), Query Frame = 0 

Query: 8   VILNCRPSPRSLVRCSSRIEREGDPSTAEANRTSSVRGTIEGSESKVSSIRNVALCVATA 67
           VILNCRPSPRSLVRCSSRIEREGDPSTAEANRTSSVRGTIEGSESKVSSIRNVALCVATA
Sbjct: 47  VILNCRPSPRSLVRCSSRIEREGDPSTAEANRTSSVRGTIEGSESKVSSIRNVALCVATA 106

Query: 68  VAFGIGVGLKDGVGKASEFFAGYLLEQSLSVDNLFVFVLIFKYFKVPTEYQ 118
           VAFGIGVGLKDGVGKASEFFAGYLLEQSLSVDNLFVFVLIFKYFKVPTEYQ
Sbjct: 107 VAFGIGVGLKDGVGKASEFFAGYLLEQSLSVDNLFVFVLIFKYFKVPTEYQ 157

[Close]
BLAST of Cucsat.G13681.T39 vs. ExPASy TrEMBL
Match: A0A1S3BGI3 (thylakoid membrane protein TERC, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103489749 PE=4 SV=1)

HSP 1 Score: 209 bits (532), Expect = 2.82e-64
Identity = 108/111 (97.30%), Postives = 108/111 (97.30%), Query Frame = 0 

Query: 8   VILNCRPSPRSLVRCSSRIEREGDPSTAEANRTSSVRGTIEGSESKVSSIRNVALCVATA 67
           VILNC PSPR LVRCSSRIEREGDPSTAEANRTSSVRGTIEG ESKVSSIRNVALCVATA
Sbjct: 47  VILNCHPSPRPLVRCSSRIEREGDPSTAEANRTSSVRGTIEGPESKVSSIRNVALCVATA 106

Query: 68  VAFGIGVGLKDGVGKASEFFAGYLLEQSLSVDNLFVFVLIFKYFKVPTEYQ 118
           VAFGIGVGLKDGVGKASEFFAGYLLEQSLSVDNLFVFVLIFKYFKVPTEYQ
Sbjct: 107 VAFGIGVGLKDGVGKASEFFAGYLLEQSLSVDNLFVFVLIFKYFKVPTEYQ 157

[Close]
BLAST of Cucsat.G13681.T39 vs. ExPASy TrEMBL
Match: A0A5A7TWH1 (Thylakoid membrane protein TERC OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold908G001310 PE=4 SV=1)

HSP 1 Score: 209 bits (532), Expect = 2.82e-64
Identity = 108/111 (97.30%), Postives = 108/111 (97.30%), Query Frame = 0 

Query: 8   VILNCRPSPRSLVRCSSRIEREGDPSTAEANRTSSVRGTIEGSESKVSSIRNVALCVATA 67
           VILNC PSPR LVRCSSRIEREGDPSTAEANRTSSVRGTIEG ESKVSSIRNVALCVATA
Sbjct: 47  VILNCHPSPRPLVRCSSRIEREGDPSTAEANRTSSVRGTIEGPESKVSSIRNVALCVATA 106

Query: 68  VAFGIGVGLKDGVGKASEFFAGYLLEQSLSVDNLFVFVLIFKYFKVPTEYQ 118
           VAFGIGVGLKDGVGKASEFFAGYLLEQSLSVDNLFVFVLIFKYFKVPTEYQ
Sbjct: 107 VAFGIGVGLKDGVGKASEFFAGYLLEQSLSVDNLFVFVLIFKYFKVPTEYQ 157

[Close]
BLAST of Cucsat.G13681.T39 vs. ExPASy TrEMBL
Match: A0A6J1CQ88 (thylakoid membrane protein TERC, chloroplastic isoform X2 OS=Momordica charantia OX=3673 GN=LOC111013731 PE=4 SV=1)

HSP 1 Score: 180 bits (457), Expect = 4.62e-53
Identity = 95/122 (77.87%), Postives = 102/122 (83.61%), Query Frame = 0 

Query: 8   VILNCRPSPRSLVRCSSRIEREGDPSTAEANR-----------TSSVRGTIEGSESKVSS 67
           V+LNC  +PRSL+RC SRIE+EGDPSTAEANR           T SV GT EG ESKVSS
Sbjct: 47  VVLNCHRAPRSLIRCGSRIEKEGDPSTAEANRSQSSGEKEYNRTYSVSGTTEGFESKVSS 106

Query: 68  IRNVALCVATAVAFGIGVGLKDGVGKASEFFAGYLLEQSLSVDNLFVFVLIFKYFKVPTE 118
           +RNVALCVATAVAFGIG+GLKDG GKASEF+AGYLLEQSLSVDNLFVFVLIFKYFKVP E
Sbjct: 107 VRNVALCVATAVAFGIGLGLKDGPGKASEFYAGYLLEQSLSVDNLFVFVLIFKYFKVPIE 166

[Close]
BLAST of Cucsat.G13681.T39 vs. ExPASy TrEMBL
Match: A0A6J1CQT8 (thylakoid membrane protein TERC, chloroplastic isoform X1 OS=Momordica charantia OX=3673 GN=LOC111013731 PE=4 SV=1)

HSP 1 Score: 180 bits (457), Expect = 6.87e-53
Identity = 95/122 (77.87%), Postives = 102/122 (83.61%), Query Frame = 0 

Query: 8   VILNCRPSPRSLVRCSSRIEREGDPSTAEANR-----------TSSVRGTIEGSESKVSS 67
           V+LNC  +PRSL+RC SRIE+EGDPSTAEANR           T SV GT EG ESKVSS
Sbjct: 47  VVLNCHRAPRSLIRCGSRIEKEGDPSTAEANRSQSSGEKEYNRTYSVSGTTEGFESKVSS 106

Query: 68  IRNVALCVATAVAFGIGVGLKDGVGKASEFFAGYLLEQSLSVDNLFVFVLIFKYFKVPTE 118
           +RNVALCVATAVAFGIG+GLKDG GKASEF+AGYLLEQSLSVDNLFVFVLIFKYFKVP E
Sbjct: 107 VRNVALCVATAVAFGIGLGLKDGPGKASEFYAGYLLEQSLSVDNLFVFVLIFKYFKVPIE 166

The following BLAST results are available for this feature:
BLAST of Cucsat.G13681.T39 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
F4JZG91.9e-2146.90Thylakoid membrane protein TERC, chloroplastic OS=Arabidopsis thaliana OX=3702 G... [more]
P965541.5e-0751.72Uncharacterized membrane protein STKORF319 OS=Myxococcus xanthus OX=34 PE=3 SV=1[more]
Q92GA45.5e-0542.31Uncharacterized membrane protein RC1219 OS=Rickettsia conorii (strain ATCC VR-61... [more]
Q68VW21.6e-0438.78Uncharacterized membrane protein RT0774 OS=Rickettsia typhi (strain ATCC VR-144 ... [more]
P9WG922.1e-0450.00Uncharacterized membrane protein MT2795 OS=Mycobacterium tuberculosis (strain CD... [more]
BLAST of Cucsat.G13681.T39 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_004142102.13.20e-66100.00thylakoid membrane protein TERC, chloroplastic [Cucumis sativus] >KGN54196.1 hyp... [more]
XP_008447276.15.82e-6497.30PREDICTED: thylakoid membrane protein TERC, chloroplastic [Cucumis melo] >XP_008... [more]
XP_038883780.13.37e-6091.89thylakoid membrane protein TERC, chloroplastic isoform X1 [Benincasa hispida][more]
XP_022143940.19.54e-5377.87thylakoid membrane protein TERC, chloroplastic isoform X2 [Momordica charantia][more]
KAG7027292.11.22e-5277.97Thylakoid membrane protein TERC, chloroplastic [Cucurbita argyrosperma subsp. ar... [more]
BLAST of Cucsat.G13681.T39 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L2201.55e-66100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G293060 PE=4 SV=1[more]
A0A1S3BGI32.82e-6497.30thylakoid membrane protein TERC, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103... [more]
A0A5A7TWH12.82e-6497.30Thylakoid membrane protein TERC OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_... [more]
A0A6J1CQ884.62e-5377.87thylakoid membrane protein TERC, chloroplastic isoform X2 OS=Momordica charantia... [more]
A0A6J1CQT86.87e-5377.87thylakoid membrane protein TERC, chloroplastic isoform X1 OS=Momordica charantia... [more]
InterPro
Analysis Name: InterPro Annotations of Cucumber (B10) v3
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR022369Integral membrane protein TerC, riboswitch-linkedPANTHERPTHR30238:SF0THYLAKOID MEMBRANE PROTEIN TERC, CHLOROPLASTICcoord: 40..123
NoneNo IPR availablePANTHERPTHR30238MEMBRANE BOUND PREDICTED REDOX MODULATORcoord: 40..123

Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Cucsat.G13681Cucsat.G13681gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Cucsat.G13681.T39.E1Cucsat.G13681.T39.E1exon
Cucsat.G13681.T39.E2Cucsat.G13681.T39.E2exon
Cucsat.G13681.T39.E3Cucsat.G13681.T39.E3exon
Cucsat.G13681.T39.E4Cucsat.G13681.T39.E4exon
Cucsat.G13681.T39.E5Cucsat.G13681.T39.E5exon
Cucsat.G13681.T39.E6Cucsat.G13681.T39.E6exon
Cucsat.G13681.T39.E7Cucsat.G13681.T39.E7exon
Cucsat.G13681.T39.E8Cucsat.G13681.T39.E8exon
Cucsat.G13681.T39.E9Cucsat.G13681.T39.E9exon
Cucsat.G13681.T39.E10Cucsat.G13681.T39.E10exon
Cucsat.G13681.T39.E11Cucsat.G13681.T39.E11exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Cucsat.G13681.T39.C4Cucsat.G13681.T39.C4CDS
Cucsat.G13681.T39.C3Cucsat.G13681.T39.C3CDS
Cucsat.G13681.T39.C2Cucsat.G13681.T39.C2CDS
Cucsat.G13681.T39.C1Cucsat.G13681.T39.C1CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Cucsat.G13681.T39Cucsat.G13681.T39-proteinpolypeptide


GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0010027 thylakoid membrane organization
biological_process GO:0090351 seedling development
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0009535 chloroplast thylakoid membrane