Cucsat.G13680.T13 (mRNA) Cucumber (B10) v3

Overview
NameCucsat.G13680.T13
TypemRNA
OrganismCucumis sativus L. var. sativus cv B10 (Cucumber (B10) v3)
DescriptionDNA topoisomerase 6 subunit A
Locationctg184: 832068 .. 836300 (-)
RNA-Seq ExpressionCucsat.G13680.T13
SyntenyCucsat.G13680.T13
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
AGTTAAATTCTCTGTTCATCTACCCGCCACGTTTGGCTTCAGCTCCAAAATTCCTTCATCGACGGCACCCGCCGCCCGCTCATTTTTGGTGGAACGTATGGCGGGGACTCTATCGGCTTCACTGACTTCCAATTCTGCACTTCCTCAAAGGAAATCTAGCCAATCTTCGCGTGTCTTCTACATTCCTCGTTGTCGGAACCTTCTCTTTAATTACAGTTTTTCGCACTGCAGCAATATTGTGAGACTCTCACTACGGCGAACTGGCGTCGTTGTCTCGGCAATATCTGGTTCTCCCGGTGAGTTAAATTGCTCTTCGCGTTACGGTTTTTCCCTCGTGATTTCGGGATGTGGTTTATGAAACGTGGTTTACAGGAATTGGATCGTATGTGGAGAGTGGGAACACTGCAGATTTACTGGAATCGGTGAAGGTGTTTGACTTGAACGGGAATGGAATTCCGATTTCCGATCTCTGGAAAGATAGGAAAGCTGTTGTTGCATTTGCGCGTCATTTTGGGTACTTTGTTTGAATTTTATATTATAGCTAATTGACAACAGTTTTTCAATTTCTATTTTTCGGTTTATGAGTAGATGTAAGTTGTTACAGGTGTGTCTTTTGCCGAAAACGTGCTGATTATCTTGCATCTAAGAAGGTAACGAAGCTGAGTTATCAATACAATAGTTGCTTAAATTGAATATACTTGCTTCAACTTGATTCAGAGGCAGTTGACATTACTTATTCATATTCATTTGAAGTTGGAGGTTCAAATTCTCAATTCTCACATTGAGGATCGCAATGTTTATAGGATATATGTTACTATTCACAATTAATTTTGAGCTGGAACTTCATGTTATTTAATATGGTATGAGAAACTATTAAGTCTAAACGAGCATACGGTCCAATAATATAAATTAGTATCCAATCCAAGAATGGTAAATCTAAAGAAACACCATTTTGAAGTACATGTTTGAGGATCTCGCATAATATAAATTAAGATTTTATAAAACCACGAGCTACTCCTCCCATTGTCGGTTGGTTTTATGATGGTATCTCATGTGTTGATACTAAAAAAATTTGAATACATATGTTTTGGAGATATTGTTCACTTCAAGTAATTTTCCTTCTTAATCTTTGATCAAATTAATTAGCTTGCTCCATTTATAATTTTGTACTGTTTATGGTGAAAATAGAATTAGTATCTAACCATTAATTTGATTATACATATACAAATATACACACACAACATATATATAAAAGATATTTTCAAGAATTAAGTCACACAGTTCATGATATGGTAGCAGGATTTATTGGATGCATCCGGTGTGGCTCTTGTGCTGATTGGACCTGGTAGCATTGATCAGGTATGAAACTAGTCTCAATGAATAATTTGCAGAATGCTGGGGATTTTATTAGGTACTGGGTTTTGGATTACGACACACTTTATTTGTTAAGCCACATTATTTCCATTTTATCTTTTTGAGTTGGACCGTATGGTTATGGATAATTAGTAGATTATCACTGCATCATTATCTCCCATTAAAATCTGTCAGTTCACTTTATTGATCCTTATTTAACTTAATGTTAACAATCTGATGTAGGCAAAAGCATTCAGTGAGCAAACAAAATTTCAGGGAGGTAAGTTTCTGCCAATGTAGAAAAATTTTGGAACCGAGTTTTTGTGGCTTCTTTATGTGTACATTATATAATAGAGATCAATCAGGTGTTGATGAAGAAATGTGCAGGATGTAATGGAAGTTATCTAGTTAGGCTACTGCTAGTTAGATATTTTATTCTCAATAAATATTCCTTTGAACCATATGTTGATCTGATCAGAGAAGTTTAACAGTTGTCTTTTTTATCTTTAAGTATTTCTGTTGAGGACCTGAGAATGGATAAAATTAAAAACAATATTAGGTAAGAACGATGGCAGATCTAGATAAGTTTTGGTAGTAAGATTGGATTATTGACTTTCTTCTGAATCGATGTTAACCAGTTATATATGTGTTTAGAATTGTAATCTAGAATAAGCAGGGACGGTTTTTTGTTTTGACCGACTGATGAACGTGTACTATCTTTTACAGAAGTTTATGCTGATCCTGCTCATTCATCATACGAGGCTCTAAATTTTGTCTCTGGGTTTACAACCACATTTACTCCCAAAGTAGGTTAGGAGTTAAGTATAACAGTAAACTAATATTCACCGGCAATAACAGATTGTGGTGCTTACCTTGGTTGCTTGTATGACTTTATACTTAGGCGGGTCTCAAGATTATTGAGCTATATATGGAAGGCTATCGGCAAGATTGGAATCTTTCTTTCCAAAAGGACACTGTGACTAGAGGGGGCTGGTAATTGAAAATTCTAATTGTTTTATTTCTCTCTATCTCTCCATTGTTTTGAAAGTTATAAAACCGTGTTAAACAATGAGAAGTCGGAAAAGAAAATAGAAGAAGAAGAATGATGATTCAATGAACTCACCTCCTCACCGTCAAGGGATTAGGCAAATACATAACTCTTTCCTTTATGTGCCACTTTAAGAATGTTAGGAAAATTCAAGAATAGCCAACGGCACAAAAACACTAAAAGATAAAAATATATATTGCATTGAAGAAACTTCAAAATCATAGCTTTTCGAGAGGACTACACTCTCCCAAATTTGACCATGAAAATTACTACTAAAATGATCCACGTCTCTAATGACCCTAACATATTATATTTATAACCAAAGTACCCCTAGCCAATGATCCTCCTGCCCTTGCTATTAACCTACTTAATAATCTTAATATATCTCTAAGTAGGCTCTCACATGTTCATTATAAAGAGTAAAAATGGCAATTCAGATTTATGACTACACCCTTGAACTGCGATTAGATTCCATGAGCTGACATGAACAGGCAGTGAGATCCCCTAATCTTGAGATATTCTACCTTATCACTTAAGCAAACTTACATTTGAGTATGTCCTCGATTCATTTGATTAAAGTGGAGGGCTCATGTTGAATATGATATATCATAATCTCTGATTCACTTTGGATAGTCTTCTCACTTTCTGTGGGAAACTCATCATTGTATGTCTTAAGAAATATAGTTCAGTACCCAAAAGACTTGGTTATTAATCAAAAGAATTTAGATTCATTGATCAGTCGTTTCTTTTTCACATCTCTCTCATTATGCTTAATGAGAAAATATATTCGTGCCATTCTCAGGCAGCAAGGTGGCATCATAGTTGCAGGTCCCGGTAAAAATAACATCTCTTACATTCACAAGGTATGACACTTTTCCTATATCTGTTCTTATTTGTTATCTTGGAATATCTTGAATCTATTATTTTTATGCTAAGATTTAGAGAATTGGATTATATATCATCTCTCTAGTTCCTGAGGCACCCATGCAATCAGTACTTTGGCACTTCCTCTCTAATAATACAACTACTCTCCCTTTGCCCATGAACATTGTTATATATAATACTGTTAGTGAACCATATAAACATTTGTGTCGTACTTCTACTATTTACATTTTCTGTTTATCTCTGATTGTCAAATTCATAACATTTTTTGCTATGATAAAATCCAAATCAATGATTTTTATCGATTTTATTATCCTGGTAAAACAATATCCAAAAGATTTCCCAACACAGGAAAAATAATACCAATACCAACAATAAAACTCCGACCCCAGGCCTTCAGGGTTGAATCTAAGATAAACTTCGTAACTTTCTGAAAACCCCTTTTAAATCTTTTGGTAGATGTAAAGCTTCACATAGTCAACTTTTGTTATTATTACTATTAATATTATTATTTTTTAAACTTTAGGATAAAGAAGCTGGGGATGATCCAGATATCCAAGAAATTCTCAAGGCATGTTGCTCATAAAGTTGAGATAGATTCTCACACTGCCAAGATCCAGTGCTACCTTAAACGCTGGCTTGCAATAAGGTAGTAATTATGGAACCAAAACACCTTGAAATTAATACCCCACTTGAAAATGAAAACTGATATGAAGGAAAAAGTAGAGTATATATAATTTTTATTAAGGGAGCAGTTAGTTTTATAATCTGAAGTATACTATGAATACTTGTAGATATGGATGATAAAGTTAGAGAATCAGGTGAATGAAATTCATTTTCTATGTATTTTCAGGCCAGAAAGTGTTCGAATAATTATTGAATCATGCAAAATGGTATCAGAAGTATATATTGAGAAAAACTCAGAAAATATTAGAACTAATGGAGTGACC

Coding sequence (CDS)

GTTAAATTCTCTGTTCATCTACCCGCCACGTTTGGCTTCAGCTCCAAAATTCCTTCATCGACGGCACCCGCCGCCCGCTCATTTTTGGTGGAACGTATGGCGGGGACTCTATCGGCTTCACTGACTTCCAATTCTGCACTTCCTCAAAGGAAATCTAGCCAATCTTCGCGTGTCTTCTACATTCCTCGTTGTCGGAACCTTCTCTTTAATTACAGTTTTTCGCACTGCAGCAATATTGTGAGACTCTCACTACGGCGAACTGGCGTCGTTGTCTCGGCAATATCTGGTTCTCCCGGAATTGGATCGTATGTGGAGAGTGGGAACACTGCAGATTTACTGGAATCGGTGAAGGTGTTTGACTTGAACGGGAATGGAATTCCGATTTCCGATCTCTGGAAAGATAGGAAAGCTGTTGTTGCATTTGCGCGTCATTTTGGGTGTGTCTTTTGCCGAAAACGTGCTGATTATCTTGCATCTAAGAAGGATTTATTGGATGCATCCGGTGTGGCTCTTGTGCTGATTGGACCTGGTAGCATTGATCAGGTATGA

Protein sequence

VKFSVHLPATFGFSSKIPSSTAPAARSFLVERMAGTLSASLTSNSALPQRKSSQSSRVFYIPRCRNLLFNYSFSHCSNIVRLSLRRTGVVVSAISGSPGIGSYVESGNTADLLESVKVFDLNGNGIPISDLWKDRKAVVAFARHFGCVFCRKRADYLASKKDLLDASGVALVLIGPGSIDQV
Homology
[Close]
BLAST of Cucsat.G13680.T13 vs. ExPASy Swiss-Prot
Match: Q9ZUU2 (Thioredoxin-like protein AAED1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At2g37240 PE=1 SV=2)

HSP 1 Score: 145.2 bits (365), Expect = 7.2e-34
Identity = 77/109 (70.64%), Postives = 89/109 (81.65%), Query Frame = 0 

Query: 73  FSHCSNIVRLSLRRTGVVVSAISGSPGIGSYVESGNTADLLESVKVFDLNGNGIPISDLW 132
           +S  S+   +SLRR+ VVVSAI+G+   G+ +  G TAD L++VKV DL GN IPISDLW
Sbjct: 33  YSVKSHFRSVSLRRSAVVVSAITGASS-GAGIGKG-TADSLDTVKVLDLRGNEIPISDLW 92

Query: 133 KDRKAVVAFARHFGCVFCRKRADYLASKKDLLDASGVALVLIGPGSIDQ 182
           KDRKAVVAFARHFGCV CRKRA YLA KKD++DASGVALVLIGPGSIDQ
Sbjct: 93  KDRKAVVAFARHFGCVLCRKRAAYLAEKKDVMDASGVALVLIGPGSIDQ 139

[Close]
BLAST of Cucsat.G13680.T13 vs. ExPASy Swiss-Prot
Match: Q5R7S9 (Prostamide/prostaglandin F synthase OS=Pongo abelii OX=9601 GN=PRXL2B PE=2 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 9.8e-07
Identity = 26/59 (44.07%), Postives = 35/59 (59.32%), Query Frame = 0 

Query: 121 LNGNGIPISDLWKDRKAVVAFARHFGCVFCRKRADYLASKKDLLDASGVALVLIGPGSI 180
           + G  + +  LW++R  VVA  R FGCV CR  A  L+S   LLD  GV LV +GP ++
Sbjct: 18  VTGEAVELRSLWRERACVVAGLRRFGCVVCRWIAQDLSSLAGLLDQHGVRLVGVGPEAL 76

[Close]
BLAST of Cucsat.G13680.T13 vs. ExPASy Swiss-Prot
Match: A9CQL8 (Prostamide/prostaglandin F synthase OS=Sus scrofa OX=9823 GN=PRXL2B PE=1 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 2.9e-06
Identity = 25/59 (42.37%), Postives = 36/59 (61.02%), Query Frame = 0 

Query: 121 LNGNGIPISDLWKDRKAVVAFARHFGCVFCRKRADYLASKKDLLDASGVALVLIGPGSI 180
           + G  + +  LW+++  VVA  R FGC+ CR  A  L+S K LLD  GV LV +GP ++
Sbjct: 18  VTGEAVELRSLWQEQACVVAGLRRFGCMVCRWIARDLSSLKGLLDQHGVRLVGVGPEAL 76

[Close]
BLAST of Cucsat.G13680.T13 vs. ExPASy Swiss-Prot
Match: Q8TBF2 (Prostamide/prostaglandin F synthase OS=Homo sapiens OX=9606 GN=PRXL2B PE=1 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 3.7e-06
Identity = 25/59 (42.37%), Postives = 34/59 (57.63%), Query Frame = 0 

Query: 121 LNGNGIPISDLWKDRKAVVAFARHFGCVFCRKRADYLASKKDLLDASGVALVLIGPGSI 180
           + G  + +  LW++   VVA  R FGCV CR  A  L+S   LLD  GV LV +GP ++
Sbjct: 18  VTGEAVELRSLWREHACVVAGLRRFGCVVCRWIAQDLSSLAGLLDQHGVRLVGVGPEAL 76

[Close]
BLAST of Cucsat.G13680.T13 vs. ExPASy Swiss-Prot
Match: Q58CY6 (Prostamide/prostaglandin F synthase OS=Bos taurus OX=9913 GN=PRXL2B PE=2 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 4.9e-06
Identity = 24/59 (40.68%), Postives = 37/59 (62.71%), Query Frame = 0 

Query: 121 LNGNGIPISDLWKDRKAVVAFARHFGCVFCRKRADYLASKKDLLDASGVALVLIGPGSI 180
           + G  + + +LW+++  VVA  R FGC+ CR  A  L++ K LLD  GV LV +GP ++
Sbjct: 18  VTGEAVELRNLWQEQACVVAGLRRFGCMVCRWIARDLSNLKGLLDQHGVRLVGVGPEAL 76

[Close]
BLAST of Cucsat.G13680.T13 vs. NCBI nr
Match: XP_004142104.1 (thioredoxin-like protein AAED1, chloroplastic [Cucumis sativus] >KGN54192.1 hypothetical protein Csa_018099 [Cucumis sativus])

HSP 1 Score: 293 bits (750), Expect = 1.06e-97
Identity = 149/149 (100.00%), Postives = 149/149 (100.00%), Query Frame = 0 

Query: 33  MAGTLSASLTSNSALPQRKSSQSSRVFYIPRCRNLLFNYSFSHCSNIVRLSLRRTGVVVS 92
           MAGTLSASLTSNSALPQRKSSQSSRVFYIPRCRNLLFNYSFSHCSNIVRLSLRRTGVVVS
Sbjct: 1   MAGTLSASLTSNSALPQRKSSQSSRVFYIPRCRNLLFNYSFSHCSNIVRLSLRRTGVVVS 60

Query: 93  AISGSPGIGSYVESGNTADLLESVKVFDLNGNGIPISDLWKDRKAVVAFARHFGCVFCRK 152
           AISGSPGIGSYVESGNTADLLESVKVFDLNGNGIPISDLWKDRKAVVAFARHFGCVFCRK
Sbjct: 61  AISGSPGIGSYVESGNTADLLESVKVFDLNGNGIPISDLWKDRKAVVAFARHFGCVFCRK 120

Query: 153 RADYLASKKDLLDASGVALVLIGPGSIDQ 181
           RADYLASKKDLLDASGVALVLIGPGSIDQ
Sbjct: 121 RADYLASKKDLLDASGVALVLIGPGSIDQ 149

[Close]
BLAST of Cucsat.G13680.T13 vs. NCBI nr
Match: XP_008447212.1 (PREDICTED: thioredoxin-like protein AAED1, chloroplastic [Cucumis melo] >KAA0047309.1 thioredoxin-like protein AAED1 [Cucumis melo var. makuwa])

HSP 1 Score: 271 bits (692), Expect = 7.00e-89
Identity = 137/149 (91.95%), Postives = 142/149 (95.30%), Query Frame = 0 

Query: 33  MAGTLSASLTSNSALPQRKSSQSSRVFYIPRCRNLLFNYSFSHCSNIVRLSLRRTGVVVS 92
           MA TLSASLTSNSALPQRKS Q SRVFY PRCRN+ F+YSFSHC NIV+ SLRRTGVVVS
Sbjct: 1   MAATLSASLTSNSALPQRKSCQPSRVFYNPRCRNIPFSYSFSHCKNIVKFSLRRTGVVVS 60

Query: 93  AISGSPGIGSYVESGNTADLLESVKVFDLNGNGIPISDLWKDRKAVVAFARHFGCVFCRK 152
           AISGSPGIGSYVESGNTADLLESVKVFDLNG+GIPISDLWK+RKAVVAFARHFGCVFCRK
Sbjct: 61  AISGSPGIGSYVESGNTADLLESVKVFDLNGDGIPISDLWKNRKAVVAFARHFGCVFCRK 120

Query: 153 RADYLASKKDLLDASGVALVLIGPGSIDQ 181
           RADYLASKKDLLDASGVALVLIGPGSIDQ
Sbjct: 121 RADYLASKKDLLDASGVALVLIGPGSIDQ 149

[Close]
BLAST of Cucsat.G13680.T13 vs. NCBI nr
Match: KAG6603698.1 (Thioredoxin-like protein AAED1, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 251 bits (641), Expect = 3.92e-81
Identity = 129/149 (86.58%), Postives = 135/149 (90.60%), Query Frame = 0 

Query: 33  MAGTLSASLTSNSALPQRKSSQSSRVFYIPRCRNLLFNYSFSHCSNIVRLSLRRTGVVVS 92
           MA TLSAS T +SA PQRKSSQS RVFY    RNLLFN SFSHC+N V+LSL R G+VVS
Sbjct: 1   MAATLSASPTYSSAAPQRKSSQSPRVFYNSSHRNLLFNSSFSHCNNTVKLSLERAGIVVS 60

Query: 93  AISGSPGIGSYVESGNTADLLESVKVFDLNGNGIPISDLWKDRKAVVAFARHFGCVFCRK 152
           A+S SPGIGSYVESGNTADLL+SVKVFDLNGNGIPISDLWKDRKAVVAFARHFGCVFCRK
Sbjct: 61  AVSDSPGIGSYVESGNTADLLDSVKVFDLNGNGIPISDLWKDRKAVVAFARHFGCVFCRK 120

Query: 153 RADYLASKKDLLDASGVALVLIGPGSIDQ 181
           RADYLASKKDLLDASGVALVLIGPGSIDQ
Sbjct: 121 RADYLASKKDLLDASGVALVLIGPGSIDQ 149

[Close]
BLAST of Cucsat.G13680.T13 vs. NCBI nr
Match: XP_022950914.1 (thioredoxin-like protein AAED1, chloroplastic isoform X2 [Cucurbita moschata])

HSP 1 Score: 249 bits (637), Expect = 1.59e-80
Identity = 128/149 (85.91%), Postives = 135/149 (90.60%), Query Frame = 0 

Query: 33  MAGTLSASLTSNSALPQRKSSQSSRVFYIPRCRNLLFNYSFSHCSNIVRLSLRRTGVVVS 92
           MA TLSAS T +SA PQRKSSQS RVFY    RNLLFN SFSHC+N V+LSL+R G+VVS
Sbjct: 1   MAATLSASPTYSSAAPQRKSSQSPRVFYNSSHRNLLFNSSFSHCNNTVKLSLKRAGIVVS 60

Query: 93  AISGSPGIGSYVESGNTADLLESVKVFDLNGNGIPISDLWKDRKAVVAFARHFGCVFCRK 152
           A+S SPGIGSYVESGN ADLL+SVKVFDLNGNGIPISDLWKDRKAVVAFARHFGCVFCRK
Sbjct: 61  AVSDSPGIGSYVESGNIADLLDSVKVFDLNGNGIPISDLWKDRKAVVAFARHFGCVFCRK 120

Query: 153 RADYLASKKDLLDASGVALVLIGPGSIDQ 181
           RADYLASKKDLLDASGVALVLIGPGSIDQ
Sbjct: 121 RADYLASKKDLLDASGVALVLIGPGSIDQ 149

[Close]
BLAST of Cucsat.G13680.T13 vs. NCBI nr
Match: XP_023543103.1 (thioredoxin-like protein AAED1, chloroplastic isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 248 bits (634), Expect = 4.53e-80
Identity = 127/149 (85.23%), Postives = 135/149 (90.60%), Query Frame = 0 

Query: 33  MAGTLSASLTSNSALPQRKSSQSSRVFYIPRCRNLLFNYSFSHCSNIVRLSLRRTGVVVS 92
           MA TLSAS T +SA P+RKSSQS RVFY    RNLLFN SFSHC+N V+LSL+R G+VVS
Sbjct: 1   MAATLSASPTYSSAAPERKSSQSPRVFYNSSHRNLLFNSSFSHCNNTVKLSLKRAGIVVS 60

Query: 93  AISGSPGIGSYVESGNTADLLESVKVFDLNGNGIPISDLWKDRKAVVAFARHFGCVFCRK 152
           A+S SPGIGSYVESGN ADLL+SVKVFDLNGNGIPISDLWKDRKAVVAFARHFGCVFCRK
Sbjct: 61  AVSDSPGIGSYVESGNIADLLDSVKVFDLNGNGIPISDLWKDRKAVVAFARHFGCVFCRK 120

Query: 153 RADYLASKKDLLDASGVALVLIGPGSIDQ 181
           RADYLASKKDLLDASGVALVLIGPGSIDQ
Sbjct: 121 RADYLASKKDLLDASGVALVLIGPGSIDQ 149

[Close]
BLAST of Cucsat.G13680.T13 vs. ExPASy TrEMBL
Match: A0A0A0L0Q9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G293020 PE=4 SV=1)

HSP 1 Score: 293 bits (750), Expect = 5.14e-98
Identity = 149/149 (100.00%), Postives = 149/149 (100.00%), Query Frame = 0 

Query: 33  MAGTLSASLTSNSALPQRKSSQSSRVFYIPRCRNLLFNYSFSHCSNIVRLSLRRTGVVVS 92
           MAGTLSASLTSNSALPQRKSSQSSRVFYIPRCRNLLFNYSFSHCSNIVRLSLRRTGVVVS
Sbjct: 1   MAGTLSASLTSNSALPQRKSSQSSRVFYIPRCRNLLFNYSFSHCSNIVRLSLRRTGVVVS 60

Query: 93  AISGSPGIGSYVESGNTADLLESVKVFDLNGNGIPISDLWKDRKAVVAFARHFGCVFCRK 152
           AISGSPGIGSYVESGNTADLLESVKVFDLNGNGIPISDLWKDRKAVVAFARHFGCVFCRK
Sbjct: 61  AISGSPGIGSYVESGNTADLLESVKVFDLNGNGIPISDLWKDRKAVVAFARHFGCVFCRK 120

Query: 153 RADYLASKKDLLDASGVALVLIGPGSIDQ 181
           RADYLASKKDLLDASGVALVLIGPGSIDQ
Sbjct: 121 RADYLASKKDLLDASGVALVLIGPGSIDQ 149

[Close]
BLAST of Cucsat.G13680.T13 vs. ExPASy TrEMBL
Match: A0A5A7U1E7 (Thioredoxin-like protein AAED1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold908G001250 PE=4 SV=1)

HSP 1 Score: 271 bits (692), Expect = 3.39e-89
Identity = 137/149 (91.95%), Postives = 142/149 (95.30%), Query Frame = 0 

Query: 33  MAGTLSASLTSNSALPQRKSSQSSRVFYIPRCRNLLFNYSFSHCSNIVRLSLRRTGVVVS 92
           MA TLSASLTSNSALPQRKS Q SRVFY PRCRN+ F+YSFSHC NIV+ SLRRTGVVVS
Sbjct: 1   MAATLSASLTSNSALPQRKSCQPSRVFYNPRCRNIPFSYSFSHCKNIVKFSLRRTGVVVS 60

Query: 93  AISGSPGIGSYVESGNTADLLESVKVFDLNGNGIPISDLWKDRKAVVAFARHFGCVFCRK 152
           AISGSPGIGSYVESGNTADLLESVKVFDLNG+GIPISDLWK+RKAVVAFARHFGCVFCRK
Sbjct: 61  AISGSPGIGSYVESGNTADLLESVKVFDLNGDGIPISDLWKNRKAVVAFARHFGCVFCRK 120

Query: 153 RADYLASKKDLLDASGVALVLIGPGSIDQ 181
           RADYLASKKDLLDASGVALVLIGPGSIDQ
Sbjct: 121 RADYLASKKDLLDASGVALVLIGPGSIDQ 149

[Close]
BLAST of Cucsat.G13680.T13 vs. ExPASy TrEMBL
Match: A0A1S3BHI3 (thioredoxin-like protein AAED1, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103489710 PE=4 SV=1)

HSP 1 Score: 271 bits (692), Expect = 3.39e-89
Identity = 137/149 (91.95%), Postives = 142/149 (95.30%), Query Frame = 0 

Query: 33  MAGTLSASLTSNSALPQRKSSQSSRVFYIPRCRNLLFNYSFSHCSNIVRLSLRRTGVVVS 92
           MA TLSASLTSNSALPQRKS Q SRVFY PRCRN+ F+YSFSHC NIV+ SLRRTGVVVS
Sbjct: 1   MAATLSASLTSNSALPQRKSCQPSRVFYNPRCRNIPFSYSFSHCKNIVKFSLRRTGVVVS 60

Query: 93  AISGSPGIGSYVESGNTADLLESVKVFDLNGNGIPISDLWKDRKAVVAFARHFGCVFCRK 152
           AISGSPGIGSYVESGNTADLLESVKVFDLNG+GIPISDLWK+RKAVVAFARHFGCVFCRK
Sbjct: 61  AISGSPGIGSYVESGNTADLLESVKVFDLNGDGIPISDLWKNRKAVVAFARHFGCVFCRK 120

Query: 153 RADYLASKKDLLDASGVALVLIGPGSIDQ 181
           RADYLASKKDLLDASGVALVLIGPGSIDQ
Sbjct: 121 RADYLASKKDLLDASGVALVLIGPGSIDQ 149

[Close]
BLAST of Cucsat.G13680.T13 vs. ExPASy TrEMBL
Match: A0A6J1GH74 (thioredoxin-like protein AAED1, chloroplastic isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111453866 PE=4 SV=1)

HSP 1 Score: 249 bits (637), Expect = 7.69e-81
Identity = 128/149 (85.91%), Postives = 135/149 (90.60%), Query Frame = 0 

Query: 33  MAGTLSASLTSNSALPQRKSSQSSRVFYIPRCRNLLFNYSFSHCSNIVRLSLRRTGVVVS 92
           MA TLSAS T +SA PQRKSSQS RVFY    RNLLFN SFSHC+N V+LSL+R G+VVS
Sbjct: 1   MAATLSASPTYSSAAPQRKSSQSPRVFYNSSHRNLLFNSSFSHCNNTVKLSLKRAGIVVS 60

Query: 93  AISGSPGIGSYVESGNTADLLESVKVFDLNGNGIPISDLWKDRKAVVAFARHFGCVFCRK 152
           A+S SPGIGSYVESGN ADLL+SVKVFDLNGNGIPISDLWKDRKAVVAFARHFGCVFCRK
Sbjct: 61  AVSDSPGIGSYVESGNIADLLDSVKVFDLNGNGIPISDLWKDRKAVVAFARHFGCVFCRK 120

Query: 153 RADYLASKKDLLDASGVALVLIGPGSIDQ 181
           RADYLASKKDLLDASGVALVLIGPGSIDQ
Sbjct: 121 RADYLASKKDLLDASGVALVLIGPGSIDQ 149

[Close]
BLAST of Cucsat.G13680.T13 vs. ExPASy TrEMBL
Match: A0A6J1IR48 (thioredoxin-like protein AAED1, chloroplastic isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111477698 PE=4 SV=1)

HSP 1 Score: 248 bits (634), Expect = 2.19e-80
Identity = 129/149 (86.58%), Postives = 134/149 (89.93%), Query Frame = 0 

Query: 33  MAGTLSASLTSNSALPQRKSSQSSRVFYIPRCRNLLFNYSFSHCSNIVRLSLRRTGVVVS 92
           MA TLSAS T  SA PQRKSSQS RVFY P  RNLLFN SFSH +N V+LSL+R GVVVS
Sbjct: 1   MAATLSASPTYGSAAPQRKSSQSPRVFYNPSHRNLLFNSSFSHYNNTVKLSLKRAGVVVS 60

Query: 93  AISGSPGIGSYVESGNTADLLESVKVFDLNGNGIPISDLWKDRKAVVAFARHFGCVFCRK 152
           A+S SPGIGSYVESGN ADLL+SVKVFDLNGNGIPISDLWKDRKAVVAFARHFGCVFCRK
Sbjct: 61  AVSDSPGIGSYVESGNIADLLDSVKVFDLNGNGIPISDLWKDRKAVVAFARHFGCVFCRK 120

Query: 153 RADYLASKKDLLDASGVALVLIGPGSIDQ 181
           RADYLASKKDLLDASGVALVLIGPGSIDQ
Sbjct: 121 RADYLASKKDLLDASGVALVLIGPGSIDQ 149

The following BLAST results are available for this feature:
BLAST of Cucsat.G13680.T13 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9ZUU27.2e-3470.64Thioredoxin-like protein AAED1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN... [more]
Q5R7S99.8e-0744.07Prostamide/prostaglandin F synthase OS=Pongo abelii OX=9601 GN=PRXL2B PE=2 SV=1[more]
A9CQL82.9e-0642.37Prostamide/prostaglandin F synthase OS=Sus scrofa OX=9823 GN=PRXL2B PE=1 SV=1[more]
Q8TBF23.7e-0642.37Prostamide/prostaglandin F synthase OS=Homo sapiens OX=9606 GN=PRXL2B PE=1 SV=1[more]
Q58CY64.9e-0640.68Prostamide/prostaglandin F synthase OS=Bos taurus OX=9913 GN=PRXL2B PE=2 SV=1[more]
BLAST of Cucsat.G13680.T13 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_004142104.11.06e-97100.00thioredoxin-like protein AAED1, chloroplastic [Cucumis sativus] >KGN54192.1 hypo... [more]
XP_008447212.17.00e-8991.95PREDICTED: thioredoxin-like protein AAED1, chloroplastic [Cucumis melo] >KAA0047... [more]
KAG6603698.13.92e-8186.58Thioredoxin-like protein AAED1, chloroplastic, partial [Cucurbita argyrosperma s... [more]
XP_022950914.11.59e-8085.91thioredoxin-like protein AAED1, chloroplastic isoform X2 [Cucurbita moschata][more]
XP_023543103.14.53e-8085.23thioredoxin-like protein AAED1, chloroplastic isoform X2 [Cucurbita pepo subsp. ... [more]
BLAST of Cucsat.G13680.T13 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L0Q95.14e-98100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G293020 PE=4 SV=1[more]
A0A5A7U1E73.39e-8991.95Thioredoxin-like protein AAED1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_s... [more]
A0A1S3BHI33.39e-8991.95thioredoxin-like protein AAED1, chloroplastic OS=Cucumis melo OX=3656 GN=LOC1034... [more]
A0A6J1GH747.69e-8185.91thioredoxin-like protein AAED1, chloroplastic isoform X2 OS=Cucurbita moschata O... [more]
A0A6J1IR482.19e-8086.58thioredoxin-like protein AAED1, chloroplastic isoform X2 OS=Cucurbita maxima OX=... [more]
InterPro
Analysis Name: InterPro Annotations of Cucumber (B10) v3
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR032801Peroxiredoxin-like 2A/B/CPANTHERPTHR28630FAMILY NOT NAMEDcoord: 37..181
NoneNo IPR availablePANTHERPTHR28630:SF11THIOREDOXIN-LIKE PROTEIN AAED1, CHLOROPLASTICcoord: 37..181
IPR036249Thioredoxin-like superfamilySUPERFAMILY52833Thioredoxin-likecoord: 117..179

Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Cucsat.G13680Cucsat.G13680gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Cucsat.G13680.T13.E1Cucsat.G13680.T13.E1exon
Cucsat.G13680.T13.E2Cucsat.G13680.T13.E2exon
Cucsat.G13680.T13.E3Cucsat.G13680.T13.E3exon
Cucsat.G13680.T13.E4Cucsat.G13680.T13.E4exon
Cucsat.G13680.T13.E5Cucsat.G13680.T13.E5exon
Cucsat.G13680.T13.E6Cucsat.G13680.T13.E6exon
Cucsat.G13680.T13.E7Cucsat.G13680.T13.E7exon
Cucsat.G13680.T13.E8Cucsat.G13680.T13.E8exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Cucsat.G13680.T13.C4Cucsat.G13680.T13.C4CDS
Cucsat.G13680.T13.C3Cucsat.G13680.T13.C3CDS
Cucsat.G13680.T13.C2Cucsat.G13680.T13.C2CDS
Cucsat.G13680.T13.C1Cucsat.G13680.T13.C1CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Cucsat.G13680.T13Cucsat.G13680.T13-proteinpolypeptide


GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0098869 cellular oxidant detoxification
biological_process GO:0006265 DNA topological change
biological_process GO:0042138 meiotic DNA double-strand break formation
biological_process GO:0000706 meiotic DNA double-strand break processing
biological_process GO:0006139 nucleobase-containing compound metabolic process
biological_process GO:0006796 phosphate-containing compound metabolic process
biological_process GO:0007131 reciprocal meiotic recombination
cellular_component GO:0000228 nuclear chromosome
cellular_component GO:0009330 DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) complex
molecular_function GO:0016209 antioxidant activity
molecular_function GO:0005524 ATP binding
molecular_function GO:0003677 DNA binding
molecular_function GO:0003918 DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity
molecular_function GO:0000287 magnesium ion binding
molecular_function GO:0019205 nucleobase-containing compound kinase activity
molecular_function GO:0016491 oxidoreductase activity
molecular_function GO:0016776 phosphotransferase activity, phosphate group as acceptor