Cucsat.G13280.T1 (mRNA) Cucumber (B10) v3

Overview


Name	Cucsat.G13280.T1
Type	mRNA
Organism	Cucumis sativus L. var. sativus cv B10 (Cucumber (B10) v3)
Description	photosystem I assembly factor PSA3, chloroplastic
Location	ctg1838: 3768746 .. 3770742 (+)
RNA-Seq Expression	Cucsat.G13280.T1
Synteny	Cucsat.G13280.T1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

AAATCCCAAATCGGATAACATATATAAACGAGAGGGTGAGAATGAACAACAGTTGAGAGTCGCAGCCATGTCCGTGACCTCAACTAGCACTACTTCATCTTCTCTCCACTCCAATCCCAAATTCTTCTTCCTCTCTAACCCCATTTCTCCTTCTCCCCTCTTTCTCCGCAAACTTTATGGCCGACGCCGGAACCCGAATTCGGCCGGCGCCTTCTCCATCAAGGCTTACATGGAGAGTCCCAACTCTCTGTCCGGTTTTGCAAGTAAGGTGATCGGATCTCTGCCTGTGGTCGGACTGATCGCGAGAATTCTGAGCGATGAAGGCGGCGTCGGCACTGACATTATCGATTTTGCGGAGTTTCGTAGACGAGTTGGGAAGAAATGTACGATTATGGAGTCTAAAGCTTTCTATGAATTTCAAGAAAGAAAAGGCAAGGTAAATGTGTATCTTTATTTATGTTTATAATATCCTTTTTAAATTATACTTCATTAACTACTCTACTTTTTCTTTTTCAAAATAATAATTACTCTAGTTTTTTTAATTAAAAAAACAAGTACTTATGATAGGTAAAATTTGTTTTAAAACTTTTTAAATGTTCAGTAATTAGTAATATCTTTTTTATATTCCATTGATTCCACAGGAGAACTAAATCCTCTTTTTAACTTATTTGGAGCAAGAACTAAGTTAATGATTAAAGTTGCAAAACTTTCCAAGGTTCAAGTTAAGCGTAATTTGATGAAATTGAGAAGTTATATAACCTAACAAGTTTAGAGGTGAAATAGGTTGTATTGTACTCGTAAGTGCAATGGTGTATTTATTAATTTAAATATATTGCAAGTTTAAGATTAGAATTACAATAATGCTGCTTACTAAATCAATCAAACCAAGAAAGGTAAATCATAATGATTTGTGTTGAAGTAGAATAATTGATTGTGGTAGGCTGGAGAGCCATTGTATGTTCTATTGTGCTGCTGGCTAGCAGCCGTGGGAGCTGGTTTGCTTAAATCAGAGGAAATTTTGGAAGGAGTAGCAAGGCTTAGGATTTCAAATGATATTGAGTTTGAAGAAGAGACTTTCCTTGCTATGATGAATGAGGCTAGAGAGGTTTGTTACTCATATCATACATATATTTTTCCACTTTAAAGTCTCATTTTGCCTAAAAGAATAAAACGATGTTCATCTATGTATATAGAAACGAGAAAAACTAAAAGCGGCTGTTCCGAACATTCCGATGGAGGTTCGAATCGAGAAAGCACTTGATGCCATTTACGTTTGTTCATTTGGGAGAGACCCAATAGAGGAAGATGATGAGAAACTTTTAGTCATCATGTTGAGTGCTGTTTTTCCATCTGTTGGGGAAATTGAGATTCAGAGGATTTTGAAAGAGAAAGCAATTAGAATTGCTGAAGGTAAGGACACTGCCATTGTTCCAGAGCCACAGCCTTTGTCAAAAGAAGCTATTTTAGCCCAAATGAAGGACCTCCAATTTCTCCAAGAGAATAATGAAACTTAAGAGTCATAATTTAGTTTAGTTTGTTTGGTTGTTTTGTCAATTTGTAAGAGTTTGAATCTTTTGCTCCACAGTTTTCTAAAGTTGGCTGTTAATTATGGTATCTATATGATTCGAGATTAGAGGAGTGAGTTTAATTAAAATCCAATTAATATAGTTTGTTCATAAATCTAAAACGTTCTTTTTGGACATTGTTTGAGATGAGATACAATATAGCCGTATTCGTCAATCCAAACATAATTTAAAAGATAATGCACTAATCATCATCTCATTGATCATCTACCCCGATATCTGTTAAACTAAAGAAAAGAGAAACCAATCTAGTTGAATTACACTATATCATTGTTGGTTTCTAACAATTCAGTTCAATTTTGATCCATTTCATTGGTTTCGATATGTTCAGTTGAGCAATTGGTTCTATCAATTCAATTCCTTTTTAGGCAAGGAAGGGAGAAAAAAAAAAACTTTGATTCATCCTCAAAGATA

Coding sequence (CDS)

AATCCCAAATCGGATAACATATATAAACGAGAGGGTGAGAATGAACAACAGTTGAGAGTCGCAGCCATGTCCGTGACCTCAACTAGCACTACTTCATCTTCTCTCCACTCCAATCCCAAATTCTTCTTCCTCTCTAACCCCATTTCTCCTTCTCCCCTCTTTCTCCGCAAACTTTATGGCCGACGCCGGAACCCGAATTCGGCCGGCGCCTTCTCCATCAAGGCTTACATGGAGAGTCCCAACTCTCTGTCCGGTTTTGCAAGTAAGGTGATCGGATCTCTGCCTGTGGTCGGACTGATCGCGAGAATTCTGAGCGATGAAGGCGGCGTCGGCACTGACATTATCGATTTTGCGGAGTTTCGTAGACGAGTTGGGAAGAAATGTACGATTATGGAGTCTAAAGCTTTCTATGAATTTCAAGAAAGAAAAGGCAAGGCTGGAGAGCCATTGTATGTTCTATTGTGCTGCTGGCTAGCAGCCGTGGGAGCTGGTTTGCTTAAATCAGAGGAAATTTTGGAAGGAGTAGCAAGGCTTAGGATTTCAAATGATATTGAGTTTGAAGAAGAGACTTTCCTTGCTATGATGAATGAGGCTAGAGAGAAACGAGAAAAACTAAAAGCGGCTGTTCCGAACATTCCGATGGAGGTTCGAATCGAGAAAGCACTTGATGCCATTTACGTTTGTTCATTTGGGAGAGACCCAATAGAGGAAGATGATGAGAAACTTTTAGTCATCATGTTGAGTGCTGTTTTTCCATCTGTTGGGGAAATTGAGATTCAGAGGATTTTGAAAGAGAAAGCAATTAGAATTGCTGAAGGTAAGGACACTGCCATTGTTCCAGAGCCACAGCCTTTGTCAAAAGAAGCTATTTTAGCCCAAATGAAGGACCTCCAATTTCTCCAAGAGAATAATGAAACTTAA

Protein sequence

NPKSDNIYKREGENEQQLRVAAMSVTSTSTTSSSLHSNPKFFFLSNPISPSPLFLRKLYGRRRNPNSAGAFSIKAYMESPNSLSGFASKVIGSLPVVGLIARILSDEGGVGTDIIDFAEFRRRVGKKCTIMESKAFYEFQERKGKAGEPLYVLLCCWLAAVGAGLLKSEEILEGVARLRISNDIEFEEETFLAMMNEAREKREKLKAAVPNIPMEVRIEKALDAIYVCSFGRDPIEEDDEKLLVIMLSAVFPSVGEIEIQRILKEKAIRIAEGKDTAIVPEPQPLSKEAILAQMKDLQFLQENNET

Homology

[Close]

BLAST of Cucsat.G13280.T1 vs. ExPASy Swiss-Prot
Match: Q9M3C6 (Photosystem I assembly factor PSA3, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PSA3 PE=1 SV=1)

HSP 1 Score: 313.9 bits (803), Expect = 2.0e-84
Identity = 170/276 (61.59%), Postives = 208/276 (75.36%), Query Frame = 0


Query: 32  SSSLHS-NPKFFF--LSNPISPSPLFLRKLYGRRRNPNSAGAFSIKAYMESPNSLSGFAS 91
           S+S H  +P FF   L NP + S          R   +   A SI+AY+E PNS S FA+
Sbjct: 8   STSFHQISPSFFHLRLRNPSTTS--------SSRPKLDGGFALSIRAYIEKPNSFSTFAN 67

Query: 92  KVIGSLPVVGLIARILSDEGGVGTDIIDFAEFRRRVGKKCTIMESKAFYEFQERKGKAGE 151
           KVIGSLPV+GL+ARI+SDEGGVG D++DFAEFR+RVG KCT  +S+AFYEFQ+R+GKAGE
Sbjct: 68  KVIGSLPVIGLLARIISDEGGVGRDLVDFAEFRKRVGNKCTPDDSRAFYEFQQRRGKAGE 127

Query: 152 PLYVLLCCWLAAVGAGLLKSEEILEGVARLRISNDIEFEEETFLAMMNEAREKREKLKAA 211
           PLYVLLCCW+AAVGAGLLKSEEILEGV R+ ISND+EFEE+ F+A+M EAR++R KL   
Sbjct: 128 PLYVLLCCWVAAVGAGLLKSEEILEGVTRVSISNDLEFEEQNFIALMTEARQRRAKLNID 187

Query: 212 VPNIPMEVRIEKALDAIYVCSFGRDPIEEDDEKLLVIMLSAVFPSVGEIEIQRILKEKAI 271
            P IPME+R+EKAL+ IY C F R  IEE+DEKLL +ML AVFPSV + EI+RI+KEKA 
Sbjct: 188 APTIPMELRVEKALEGIYACCFRRGLIEEEDEKLLKVMLIAVFPSVEKSEIERIIKEKAT 247

Query: 272 RIAEGKDTAIVPEPQPLSKEAILAQMKDLQFLQENN 305
           R+ EG +   V   + L KEAI  QMKDL+FLQ+ N
Sbjct: 248 RVEEGGEEENVMAKR-LPKEAIQMQMKDLEFLQQQN 274

[Close]

BLAST of Cucsat.G13280.T1 vs. ExPASy Swiss-Prot
Match: B4FSG1 (Photosystem I assembly factor PSA3, chloroplastic OS=Zea mays OX=4577 GN=PSA3 PE=2 SV=1)

HSP 1 Score: 294.7 bits (753), Expect = 1.2e-78
Identity = 147/233 (63.09%), Postives = 189/233 (81.12%), Query Frame = 0


Query: 72  SIKAYME-SPNSLSGFASKVIGSLPVVGLIARILSDEGGVGTDIIDFAEFRRRVGKKCTI 131
           ++ AYME +PNS +  A +++G+LP+VGL+ARIL+DEGGVG DIIDFAEFRRRV KKCT+
Sbjct: 35  AVVAYMEPNPNSPAAIAGRLVGALPIVGLVARILNDEGGVGGDIIDFAEFRRRVSKKCTV 94

Query: 132 MESKAFYEFQERKGKAGEPLYVLLCCWLAAVGAGLLKSEEILEGVARLRISNDIEFEEET 191
           M+SKAFY+F +R+GK G+P YVLLCCWLAA+GAGLLK+EEILEGVARLRISNDIEFEEET
Sbjct: 95  MDSKAFYDFNQRRGKPGDPFYVLLCCWLAAIGAGLLKTEEILEGVARLRISNDIEFEEET 154

Query: 192 FLAMMNEAREKREKLKAAVPNIPMEVRIEKALDAIYVCSFGRDPIEEDDEKLLVIMLSAV 251
           F+ MM  A+EKR KLKA  P IPME R EKAL+AIYVC FG+D +E++DEKLL  +L+AV
Sbjct: 155 FIDMMRAAKEKRAKLKAPAPQIPMETRAEKALEAIYVCCFGQDMVEDEDEKLLRAILNAV 214

Query: 252 FPSVGEIEIQRILKEKAIRIAEGKDTAIVPEPQPLSKEAILAQMKDLQFLQEN 304
           FPSVG   ++R++   A ++A G+      + + +SKE    Q+KDL+FL++N
Sbjct: 215 FPSVGRAAVERMVASMAKQVASGERKR---DGRTVSKEVQQRQLKDLEFLKQN 264

[Close]

BLAST of Cucsat.G13280.T1 vs. NCBI nr
Match: XP_004141087.1 (photosystem I assembly factor PSA3, chloroplastic [Cucumis sativus] >KGN59665.1 hypothetical protein Csa_000816 [Cucumis sativus])

HSP 1 Score: 546 bits (1407), Expect = 3.34e-195
Identity = 284/284 (100.00%), Postives = 284/284 (100.00%), Query Frame = 0


Query: 23  MSVTSTSTTSSSLHSNPKFFFLSNPISPSPLFLRKLYGRRRNPNSAGAFSIKAYMESPNS 82
           MSVTSTSTTSSSLHSNPKFFFLSNPISPSPLFLRKLYGRRRNPNSAGAFSIKAYMESPNS
Sbjct: 1   MSVTSTSTTSSSLHSNPKFFFLSNPISPSPLFLRKLYGRRRNPNSAGAFSIKAYMESPNS 60

Query: 83  LSGFASKVIGSLPVVGLIARILSDEGGVGTDIIDFAEFRRRVGKKCTIMESKAFYEFQER 142
           LSGFASKVIGSLPVVGLIARILSDEGGVGTDIIDFAEFRRRVGKKCTIMESKAFYEFQER
Sbjct: 61  LSGFASKVIGSLPVVGLIARILSDEGGVGTDIIDFAEFRRRVGKKCTIMESKAFYEFQER 120

Query: 143 KGKAGEPLYVLLCCWLAAVGAGLLKSEEILEGVARLRISNDIEFEEETFLAMMNEAREKR 202
           KGKAGEPLYVLLCCWLAAVGAGLLKSEEILEGVARLRISNDIEFEEETFLAMMNEAREKR
Sbjct: 121 KGKAGEPLYVLLCCWLAAVGAGLLKSEEILEGVARLRISNDIEFEEETFLAMMNEAREKR 180

Query: 203 EKLKAAVPNIPMEVRIEKALDAIYVCSFGRDPIEEDDEKLLVIMLSAVFPSVGEIEIQRI 262
           EKLKAAVPNIPMEVRIEKALDAIYVCSFGRDPIEEDDEKLLVIMLSAVFPSVGEIEIQRI
Sbjct: 181 EKLKAAVPNIPMEVRIEKALDAIYVCSFGRDPIEEDDEKLLVIMLSAVFPSVGEIEIQRI 240

Query: 263 LKEKAIRIAEGKDTAIVPEPQPLSKEAILAQMKDLQFLQENNET 306
           LKEKAIRIAEGKDTAIVPEPQPLSKEAILAQMKDLQFLQENNET
Sbjct: 241 LKEKAIRIAEGKDTAIVPEPQPLSKEAILAQMKDLQFLQENNET 284

[Close]

BLAST of Cucsat.G13280.T1 vs. NCBI nr
Match: XP_008443515.1 (PREDICTED: uncharacterized protein LOC103487086 [Cucumis melo] >KAA0053674.1 putative ubiquinone biosynthesis UbiB [Cucumis melo var. makuwa] >TYK14001.1 putative ubiquinone biosynthesis UbiB [Cucumis melo var. makuwa])

HSP 1 Score: 519 bits (1337), Expect = 1.55e-184
Identity = 269/284 (94.72%), Postives = 278/284 (97.89%), Query Frame = 0


Query: 23  MSVTSTSTTSSSLHSNPKFFFLSNPISPSPLFLRKLYGRRRNPNSAGAFSIKAYMESPNS 82
           MSVTSTSTTSSSLHSNPK FFLSNPISPS LFL +LYGRRR+ NSAGAFSIKAYME+PNS
Sbjct: 1   MSVTSTSTTSSSLHSNPKSFFLSNPISPSRLFLPQLYGRRRSSNSAGAFSIKAYMENPNS 60

Query: 83  LSGFASKVIGSLPVVGLIARILSDEGGVGTDIIDFAEFRRRVGKKCTIMESKAFYEFQER 142
           LSGFASKVIGSLPVVGLIARI+SDEGGVG+D+IDFAEFRRRVGKKCTIMESKAFYEFQER
Sbjct: 61  LSGFASKVIGSLPVVGLIARIMSDEGGVGSDLIDFAEFRRRVGKKCTIMESKAFYEFQER 120

Query: 143 KGKAGEPLYVLLCCWLAAVGAGLLKSEEILEGVARLRISNDIEFEEETFLAMMNEAREKR 202
           KGKAGEPLYVLLCCWLAAVGAGLLKSEEILEGVARLRISNDIEFEEETF+AMMNEAREKR
Sbjct: 121 KGKAGEPLYVLLCCWLAAVGAGLLKSEEILEGVARLRISNDIEFEEETFIAMMNEAREKR 180

Query: 203 EKLKAAVPNIPMEVRIEKALDAIYVCSFGRDPIEEDDEKLLVIMLSAVFPSVGEIEIQRI 262
           EKLKAAVPNIPMEVR+EKALDAIYVCSFGRDPIEEDDEKLLVIMLSAVFPSVGEIEIQRI
Sbjct: 181 EKLKAAVPNIPMEVRVEKALDAIYVCSFGRDPIEEDDEKLLVIMLSAVFPSVGEIEIQRI 240

Query: 263 LKEKAIRIAEGKDTAIVPEPQPLSKEAILAQMKDLQFLQENNET 306
           +KEKAIRIAEGKD AIVPEPQPLSKEAILAQMKDLQFLQE NET
Sbjct: 241 VKEKAIRIAEGKDIAIVPEPQPLSKEAILAQMKDLQFLQEKNET 284

[Close]

BLAST of Cucsat.G13280.T1 vs. NCBI nr
Match: XP_038905081.1 (photosystem I assembly factor PSA3, chloroplastic [Benincasa hispida])

HSP 1 Score: 498 bits (1282), Expect = 3.72e-176
Identity = 260/284 (91.55%), Postives = 269/284 (94.72%), Query Frame = 0


Query: 23  MSVTSTSTTSSSLHSNPKFFFLSNPISPSPLFLRKLYGRRRNPNSAGAFSIKAYMESPNS 82
           MSVTSTS+TSSSLHSN K FFLS PISPS LFLR++YGRRR  NSAG  S+KAYME+PNS
Sbjct: 1   MSVTSTSSTSSSLHSNLKSFFLSKPISPSRLFLRQIYGRRRQSNSAGVLSVKAYMENPNS 60

Query: 83  LSGFASKVIGSLPVVGLIARILSDEGGVGTDIIDFAEFRRRVGKKCTIMESKAFYEFQER 142
           LSGFA+KVIGSLPVVGLIARILSDEGGVG+DIIDFAEFRRRVGKKCTIMESKAFYEFQER
Sbjct: 61  LSGFANKVIGSLPVVGLIARILSDEGGVGSDIIDFAEFRRRVGKKCTIMESKAFYEFQER 120

Query: 143 KGKAGEPLYVLLCCWLAAVGAGLLKSEEILEGVARLRISNDIEFEEETFLAMMNEAREKR 202
           KGKAGEPLYVLLCCWLAAVGAGLLKSEEILEGVARLRISNDIEFEEETFLAMMNEAREKR
Sbjct: 121 KGKAGEPLYVLLCCWLAAVGAGLLKSEEILEGVARLRISNDIEFEEETFLAMMNEAREKR 180

Query: 203 EKLKAAVPNIPMEVRIEKALDAIYVCSFGRDPIEEDDEKLLVIMLSAVFPSVGEIEIQRI 262
           EKLK AVPNIPMEVR+EKALDAIYVCSFGRDPIEEDDEKLLVIMLSAVF SV E EIQRI
Sbjct: 181 EKLKVAVPNIPMEVRVEKALDAIYVCSFGRDPIEEDDEKLLVIMLSAVFASVRETEIQRI 240

Query: 263 LKEKAIRIAEGKDTAIVPEPQPLSKEAILAQMKDLQFLQENNET 306
           +KEKAIRIAEGKD AIVPEPQPLSKEAILAQMKDLQFLQE  ET
Sbjct: 241 VKEKAIRIAEGKDIAIVPEPQPLSKEAILAQMKDLQFLQEKTET 284

[Close]

BLAST of Cucsat.G13280.T1 vs. NCBI nr
Match: XP_023530868.1 (photosystem I assembly factor PSA3, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 469 bits (1207), Expect = 1.06e-164
Identity = 244/287 (85.02%), Postives = 266/287 (92.68%), Query Frame = 0


Query: 23  MSVTSTSTTSSSLHSNPKFFFLSNPISPSPLFLRKLYG---RRRNPNSAGAFSIKAYMES 82
           M+VTSTSTTSS  HSNPK FFLS+ ISP  L  RK +G   RRR+PNS G  S++AYME+
Sbjct: 1   MAVTSTSTTSS-FHSNPKSFFLSSLISPPKLLHRKFHGSVGRRRHPNSTGVLSVRAYMEN 60

Query: 83  PNSLSGFASKVIGSLPVVGLIARILSDEGGVGTDIIDFAEFRRRVGKKCTIMESKAFYEF 142
           PNSLSGFA+KVIGSLPVVGLIARILSDEGGVG+DIIDFAEFRRRVGKKCTIM+SKAFY+F
Sbjct: 61  PNSLSGFANKVIGSLPVVGLIARILSDEGGVGSDIIDFAEFRRRVGKKCTIMDSKAFYDF 120

Query: 143 QERKGKAGEPLYVLLCCWLAAVGAGLLKSEEILEGVARLRISNDIEFEEETFLAMMNEAR 202
           QER+GK GEPL+VL+CCWLAAVGAGLLKSEEILEGVARLRIS+DIEFEEETFLAMMNEAR
Sbjct: 121 QERRGKPGEPLFVLMCCWLAAVGAGLLKSEEILEGVARLRISDDIEFEEETFLAMMNEAR 180

Query: 203 EKREKLKAAVPNIPMEVRIEKALDAIYVCSFGRDPIEEDDEKLLVIMLSAVFPSVGEIEI 262
           EKREKLK AV  IPMEVR+EKALDAIYVCSFGRDPIEEDDEKLLVIMLS+VFP+VG+ EI
Sbjct: 181 EKREKLKVAVSKIPMEVRVEKALDAIYVCSFGRDPIEEDDEKLLVIMLSSVFPTVGQTEI 240

Query: 263 QRILKEKAIRIAEGKDTAIVPEPQPLSKEAILAQMKDLQFLQENNET 306
           QRI+KEKA+RIAEGKD AIVPEPQPLSKEAILAQMKDLQFLQEN+ET
Sbjct: 241 QRIVKEKAVRIAEGKDIAIVPEPQPLSKEAILAQMKDLQFLQENSET 286

[Close]

BLAST of Cucsat.G13280.T1 vs. NCBI nr
Match: KAG6588962.1 (Photosystem I assembly factor PSA3, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 468 bits (1204), Expect = 3.03e-164
Identity = 245/288 (85.07%), Postives = 267/288 (92.71%), Query Frame = 0


Query: 23  MSVTSTSTTSSSLHSNPKFFFLSNPISPSPLFLRKLY----GRRRNPNSAGAFSIKAYME 82
           M+VTSTSTTSS  HSNPK FFLS+ ISP P FL + +    GRRR+P S G  S++AYME
Sbjct: 1   MAVTSTSTTSS-FHSNPKSFFLSSLISP-PKFLHRQFHGSVGRRRHPTSTGVLSVRAYME 60

Query: 83  SPNSLSGFASKVIGSLPVVGLIARILSDEGGVGTDIIDFAEFRRRVGKKCTIMESKAFYE 142
           +PNSLSGFA+KVIGSLPVVGLIARILSDEGGVG+DIIDFAEFRRRVGKKCTIM+SKAFY+
Sbjct: 61  NPNSLSGFANKVIGSLPVVGLIARILSDEGGVGSDIIDFAEFRRRVGKKCTIMDSKAFYD 120

Query: 143 FQERKGKAGEPLYVLLCCWLAAVGAGLLKSEEILEGVARLRISNDIEFEEETFLAMMNEA 202
           FQER+GK GEPL+VLLCCWLAAVGAGLLKSEEILEGVARLRIS+DIEFEEETFLAMMNEA
Sbjct: 121 FQERRGKPGEPLFVLLCCWLAAVGAGLLKSEEILEGVARLRISDDIEFEEETFLAMMNEA 180

Query: 203 REKREKLKAAVPNIPMEVRIEKALDAIYVCSFGRDPIEEDDEKLLVIMLSAVFPSVGEIE 262
           REKREKLK AVP IPMEVR+EKALDAIYVCSFGRDPIEEDDEKLLVIMLS+VFP+VG+ E
Sbjct: 181 REKREKLKVAVPKIPMEVRVEKALDAIYVCSFGRDPIEEDDEKLLVIMLSSVFPTVGQSE 240

Query: 263 IQRILKEKAIRIAEGKDTAIVPEPQPLSKEAILAQMKDLQFLQENNET 306
           IQRI+KEKA+RIAEGKD AIVPEPQPLSKEAILAQMKDLQFLQEN+ET
Sbjct: 241 IQRIVKEKAVRIAEGKDIAIVPEPQPLSKEAILAQMKDLQFLQENSET 286

[Close]

BLAST of Cucsat.G13280.T1 vs. ExPASy TrEMBL
Match: A0A0A0LCC2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G836490 PE=4 SV=1)

HSP 1 Score: 546 bits (1407), Expect = 1.62e-195
Identity = 284/284 (100.00%), Postives = 284/284 (100.00%), Query Frame = 0


Query: 23  MSVTSTSTTSSSLHSNPKFFFLSNPISPSPLFLRKLYGRRRNPNSAGAFSIKAYMESPNS 82
           MSVTSTSTTSSSLHSNPKFFFLSNPISPSPLFLRKLYGRRRNPNSAGAFSIKAYMESPNS
Sbjct: 1   MSVTSTSTTSSSLHSNPKFFFLSNPISPSPLFLRKLYGRRRNPNSAGAFSIKAYMESPNS 60

Query: 83  LSGFASKVIGSLPVVGLIARILSDEGGVGTDIIDFAEFRRRVGKKCTIMESKAFYEFQER 142
           LSGFASKVIGSLPVVGLIARILSDEGGVGTDIIDFAEFRRRVGKKCTIMESKAFYEFQER
Sbjct: 61  LSGFASKVIGSLPVVGLIARILSDEGGVGTDIIDFAEFRRRVGKKCTIMESKAFYEFQER 120

Query: 143 KGKAGEPLYVLLCCWLAAVGAGLLKSEEILEGVARLRISNDIEFEEETFLAMMNEAREKR 202
           KGKAGEPLYVLLCCWLAAVGAGLLKSEEILEGVARLRISNDIEFEEETFLAMMNEAREKR
Sbjct: 121 KGKAGEPLYVLLCCWLAAVGAGLLKSEEILEGVARLRISNDIEFEEETFLAMMNEAREKR 180

Query: 203 EKLKAAVPNIPMEVRIEKALDAIYVCSFGRDPIEEDDEKLLVIMLSAVFPSVGEIEIQRI 262
           EKLKAAVPNIPMEVRIEKALDAIYVCSFGRDPIEEDDEKLLVIMLSAVFPSVGEIEIQRI
Sbjct: 181 EKLKAAVPNIPMEVRIEKALDAIYVCSFGRDPIEEDDEKLLVIMLSAVFPSVGEIEIQRI 240

Query: 263 LKEKAIRIAEGKDTAIVPEPQPLSKEAILAQMKDLQFLQENNET 306
           LKEKAIRIAEGKDTAIVPEPQPLSKEAILAQMKDLQFLQENNET
Sbjct: 241 LKEKAIRIAEGKDTAIVPEPQPLSKEAILAQMKDLQFLQENNET 284

[Close]

BLAST of Cucsat.G13280.T1 vs. ExPASy TrEMBL
Match: A0A5D3CQC9 (Putative ubiquinone biosynthesis UbiB OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1119G00270 PE=4 SV=1)

HSP 1 Score: 519 bits (1337), Expect = 7.51e-185
Identity = 269/284 (94.72%), Postives = 278/284 (97.89%), Query Frame = 0


Query: 23  MSVTSTSTTSSSLHSNPKFFFLSNPISPSPLFLRKLYGRRRNPNSAGAFSIKAYMESPNS 82
           MSVTSTSTTSSSLHSNPK FFLSNPISPS LFL +LYGRRR+ NSAGAFSIKAYME+PNS
Sbjct: 1   MSVTSTSTTSSSLHSNPKSFFLSNPISPSRLFLPQLYGRRRSSNSAGAFSIKAYMENPNS 60

Query: 83  LSGFASKVIGSLPVVGLIARILSDEGGVGTDIIDFAEFRRRVGKKCTIMESKAFYEFQER 142
           LSGFASKVIGSLPVVGLIARI+SDEGGVG+D+IDFAEFRRRVGKKCTIMESKAFYEFQER
Sbjct: 61  LSGFASKVIGSLPVVGLIARIMSDEGGVGSDLIDFAEFRRRVGKKCTIMESKAFYEFQER 120

Query: 143 KGKAGEPLYVLLCCWLAAVGAGLLKSEEILEGVARLRISNDIEFEEETFLAMMNEAREKR 202
           KGKAGEPLYVLLCCWLAAVGAGLLKSEEILEGVARLRISNDIEFEEETF+AMMNEAREKR
Sbjct: 121 KGKAGEPLYVLLCCWLAAVGAGLLKSEEILEGVARLRISNDIEFEEETFIAMMNEAREKR 180

Query: 203 EKLKAAVPNIPMEVRIEKALDAIYVCSFGRDPIEEDDEKLLVIMLSAVFPSVGEIEIQRI 262
           EKLKAAVPNIPMEVR+EKALDAIYVCSFGRDPIEEDDEKLLVIMLSAVFPSVGEIEIQRI
Sbjct: 181 EKLKAAVPNIPMEVRVEKALDAIYVCSFGRDPIEEDDEKLLVIMLSAVFPSVGEIEIQRI 240

Query: 263 LKEKAIRIAEGKDTAIVPEPQPLSKEAILAQMKDLQFLQENNET 306
           +KEKAIRIAEGKD AIVPEPQPLSKEAILAQMKDLQFLQE NET
Sbjct: 241 VKEKAIRIAEGKDIAIVPEPQPLSKEAILAQMKDLQFLQEKNET 284

[Close]

BLAST of Cucsat.G13280.T1 vs. ExPASy TrEMBL
Match: A0A1S3B876 (uncharacterized protein LOC103487086 OS=Cucumis melo OX=3656 GN=LOC103487086 PE=4 SV=1)

HSP 1 Score: 519 bits (1337), Expect = 7.51e-185
Identity = 269/284 (94.72%), Postives = 278/284 (97.89%), Query Frame = 0


Query: 23  MSVTSTSTTSSSLHSNPKFFFLSNPISPSPLFLRKLYGRRRNPNSAGAFSIKAYMESPNS 82
           MSVTSTSTTSSSLHSNPK FFLSNPISPS LFL +LYGRRR+ NSAGAFSIKAYME+PNS
Sbjct: 1   MSVTSTSTTSSSLHSNPKSFFLSNPISPSRLFLPQLYGRRRSSNSAGAFSIKAYMENPNS 60

Query: 83  LSGFASKVIGSLPVVGLIARILSDEGGVGTDIIDFAEFRRRVGKKCTIMESKAFYEFQER 142
           LSGFASKVIGSLPVVGLIARI+SDEGGVG+D+IDFAEFRRRVGKKCTIMESKAFYEFQER
Sbjct: 61  LSGFASKVIGSLPVVGLIARIMSDEGGVGSDLIDFAEFRRRVGKKCTIMESKAFYEFQER 120

Query: 143 KGKAGEPLYVLLCCWLAAVGAGLLKSEEILEGVARLRISNDIEFEEETFLAMMNEAREKR 202
           KGKAGEPLYVLLCCWLAAVGAGLLKSEEILEGVARLRISNDIEFEEETF+AMMNEAREKR
Sbjct: 121 KGKAGEPLYVLLCCWLAAVGAGLLKSEEILEGVARLRISNDIEFEEETFIAMMNEAREKR 180

Query: 203 EKLKAAVPNIPMEVRIEKALDAIYVCSFGRDPIEEDDEKLLVIMLSAVFPSVGEIEIQRI 262
           EKLKAAVPNIPMEVR+EKALDAIYVCSFGRDPIEEDDEKLLVIMLSAVFPSVGEIEIQRI
Sbjct: 181 EKLKAAVPNIPMEVRVEKALDAIYVCSFGRDPIEEDDEKLLVIMLSAVFPSVGEIEIQRI 240

Query: 263 LKEKAIRIAEGKDTAIVPEPQPLSKEAILAQMKDLQFLQENNET 306
           +KEKAIRIAEGKD AIVPEPQPLSKEAILAQMKDLQFLQE NET
Sbjct: 241 VKEKAIRIAEGKDIAIVPEPQPLSKEAILAQMKDLQFLQEKNET 284

[Close]

BLAST of Cucsat.G13280.T1 vs. ExPASy TrEMBL
Match: A0A6J1EQR9 (photosystem I assembly factor PSA3, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111435039 PE=4 SV=1)

HSP 1 Score: 465 bits (1196), Expect = 2.43e-163
Identity = 242/287 (84.32%), Postives = 265/287 (92.33%), Query Frame = 0


Query: 23  MSVTSTSTTSSSLHSNPKFFFLSNPISPSPLFLRKLYG---RRRNPNSAGAFSIKAYMES 82
           M+VTSTSTTSS  HSNPK FFL + ISP  L  R+ +G   RRR+P S G  S++AYME+
Sbjct: 1   MAVTSTSTTSS-FHSNPKSFFLYSLISPPKLLHRQFHGSVGRRRHPTSTGVLSVRAYMEN 60

Query: 83  PNSLSGFASKVIGSLPVVGLIARILSDEGGVGTDIIDFAEFRRRVGKKCTIMESKAFYEF 142
           PNSLSGFA+KVIGSLPVVGLIARILSDEGGVG+DIIDFAEFRRRVGKKCTIM+SKAFY+F
Sbjct: 61  PNSLSGFANKVIGSLPVVGLIARILSDEGGVGSDIIDFAEFRRRVGKKCTIMDSKAFYDF 120

Query: 143 QERKGKAGEPLYVLLCCWLAAVGAGLLKSEEILEGVARLRISNDIEFEEETFLAMMNEAR 202
           QER+GK GEPL+VLLCCWLAAVGAGLLKSEEILEGVARLRIS+DIEFEEETFLAMMNEAR
Sbjct: 121 QERRGKPGEPLFVLLCCWLAAVGAGLLKSEEILEGVARLRISDDIEFEEETFLAMMNEAR 180

Query: 203 EKREKLKAAVPNIPMEVRIEKALDAIYVCSFGRDPIEEDDEKLLVIMLSAVFPSVGEIEI 262
           EKREKLK AVP IPMEVR+EKALDAIYVCSFGRDPIEEDDEKLLVIMLS+VFP+VG+ EI
Sbjct: 181 EKREKLKVAVPKIPMEVRVEKALDAIYVCSFGRDPIEEDDEKLLVIMLSSVFPTVGQSEI 240

Query: 263 QRILKEKAIRIAEGKDTAIVPEPQPLSKEAILAQMKDLQFLQENNET 306
           QRI+KEKA+RIAEGKD AIVPEPQPLSKEAILAQMKDLQFL+EN+ET
Sbjct: 241 QRIVKEKAVRIAEGKDIAIVPEPQPLSKEAILAQMKDLQFLRENSET 286

[Close]

BLAST of Cucsat.G13280.T1 vs. ExPASy TrEMBL
Match: A0A6J1JJA4 (photosystem I assembly factor PSA3, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111486319 PE=4 SV=1)

HSP 1 Score: 457 bits (1177), Expect = 1.90e-160
Identity = 239/287 (83.28%), Postives = 262/287 (91.29%), Query Frame = 0


Query: 23  MSVTSTSTTSSSLHSNPKFFFLSNPISPSPLFLRKLYG---RRRNPNSAGAFSIKAYMES 82
           M+VTSTSTTSS  HSNPK FFLS+ ISP  L  R+ +G   RRR+P S G  S++AYME+
Sbjct: 1   MAVTSTSTTSS-FHSNPKSFFLSSLISPPKLLHRQFHGSVGRRRHPTSTGVLSVRAYMEN 60

Query: 83  PNSLSGFASKVIGSLPVVGLIARILSDEGGVGTDIIDFAEFRRRVGKKCTIMESKAFYEF 142
           PNSLSGFA+KVIGSLPVVGLIARILSDEGGVG+DIIDFAEFRRRVGKKCTIM+SKAFY+F
Sbjct: 61  PNSLSGFANKVIGSLPVVGLIARILSDEGGVGSDIIDFAEFRRRVGKKCTIMDSKAFYDF 120

Query: 143 QERKGKAGEPLYVLLCCWLAAVGAGLLKSEEILEGVARLRISNDIEFEEETFLAMMNEAR 202
           QER+GK GEPL+VLLCCWLAAVGAGLLKSEEI EGVARLRIS+DIEFEEETFLAMMNEAR
Sbjct: 121 QERRGKPGEPLFVLLCCWLAAVGAGLLKSEEIFEGVARLRISDDIEFEEETFLAMMNEAR 180

Query: 203 EKREKLKAAVPNIPMEVRIEKALDAIYVCSFGRDPIEEDDEKLLVIMLSAVFPSVGEIEI 262
           EKREKLK AV  IPMEVR+EKALDAIYVCSFGRDPIEE DEKLLVIMLS+VFP+VG+ EI
Sbjct: 181 EKREKLKVAVSKIPMEVRVEKALDAIYVCSFGRDPIEEHDEKLLVIMLSSVFPTVGQSEI 240

Query: 263 QRILKEKAIRIAEGKDTAIVPEPQPLSKEAILAQMKDLQFLQENNET 306
           QR++KEKA+RIAEGKD AIVPEPQPLSKEAILAQMKDLQFLQEN+ T
Sbjct: 241 QRMVKEKAVRIAEGKDIAIVPEPQPLSKEAILAQMKDLQFLQENSGT 286

The following BLAST results are available for this feature:

BLAST of Cucsat.G13280.T1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9M3C6	2.0e-84	61.59	Photosystem I assembly factor PSA3, chloroplastic OS=Arabidopsis thaliana OX=370...	[more]
B4FSG1	1.2e-78	63.09	Photosystem I assembly factor PSA3, chloroplastic OS=Zea mays OX=4577 GN=PSA3 PE...	[more]

BLAST of Cucsat.G13280.T1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004141087.1	3.34e-195	100.00	photosystem I assembly factor PSA3, chloroplastic [Cucumis sativus] >KGN59665.1 ...	[more]
XP_008443515.1	1.55e-184	94.72	PREDICTED: uncharacterized protein LOC103487086 [Cucumis melo] >KAA0053674.1 put...	[more]
XP_038905081.1	3.72e-176	91.55	photosystem I assembly factor PSA3, chloroplastic [Benincasa hispida]	[more]
XP_023530868.1	1.06e-164	85.02	photosystem I assembly factor PSA3, chloroplastic [Cucurbita pepo subsp. pepo]	[more]
KAG6588962.1	3.03e-164	85.07	Photosystem I assembly factor PSA3, chloroplastic, partial [Cucurbita argyrosper...	[more]

BLAST of Cucsat.G13280.T1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LCC2	1.62e-195	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G836490 PE=4 SV=1	[more]
A0A5D3CQC9	7.51e-185	94.72	Putative ubiquinone biosynthesis UbiB OS=Cucumis melo var. makuwa OX=1194695 GN=...	[more]
A0A1S3B876	7.51e-185	94.72	uncharacterized protein LOC103487086 OS=Cucumis melo OX=3656 GN=LOC103487086 PE=...	[more]
A0A6J1EQR9	2.43e-163	84.32	photosystem I assembly factor PSA3, chloroplastic OS=Cucurbita moschata OX=3662 ...	[more]
A0A6J1JJA4	1.90e-160	83.28	photosystem I assembly factor PSA3, chloroplastic OS=Cucurbita maxima OX=3661 GN...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (B10) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR037736	Photosystem I assembly factor PSA3	PANTHER	PTHR36770	PHOTOSYSTEM I ASSEMBLY FACTOR PSA3, CHLOROPLASTIC	coord: 46..306

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cucsat.G13280	Cucsat.G13280	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cucsat.G13280.T1.E1	Cucsat.G13280.T1.E1	exon
Cucsat.G13280.T1.E2	Cucsat.G13280.T1.E2	exon
Cucsat.G13280.T1.E3	Cucsat.G13280.T1.E3	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cucsat.G13280.T1.C1	Cucsat.G13280.T1.C1	CDS
Cucsat.G13280.T1.C2	Cucsat.G13280.T1.C2	CDS
Cucsat.G13280.T1.C3	Cucsat.G13280.T1.C3	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cucsat.G13280.T1	Cucsat.G13280.T1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0048564	photosystem I assembly
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0098572	stromal side of plastid thylakoid membrane