Cucsat.G13280 (gene) Cucumber (B10) v3

Overview


Name	Cucsat.G13280
Type	gene
Organism	Cucumis sativus L. var. sativus cv B10 (Cucumber (B10) v3)
Description	photosystem I assembly factor PSA3, chloroplastic
Location	ctg1838: 3768778 .. 3770790 (+)
RNA-Seq Expression	Cucsat.G13280
Synteny	Cucsat.G13280

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

AAATCCCAAATCGGATAACATATATAAACGAGAGGGTGAGAATGAACAACAGTTGAGAGTCGCAGCCATGTCCGTGACCTCAACTAGCACTACTTCATCTTCTCTCCACTCCAATCCCAAATTCTTCTTCCTCTCTAACCCCATTTCTCCTTCTCCCCTCTTTCTCCGCAAACTTTATGGCCGACGCCGGAACCCGAATTCGGCCGGCGCCTTCTCCATCAAGGCTTACATGGAGAGTCCCAACTCTCTGTCCGGTTTTGCAAGTAAGGTGATCGGATCTCTGCCTGTGGTCGGACTGATCGCGAGAATTCTGAGCGATGAAGGCGGCGTCGGCACTGACATTATCGATTTTGCGGAGTTTCGTAGACGAGTTGGGAAGAAATGTACGATTATGGAGTCTAAAGCTTTCTATGAATTTCAAGAAAGAAAAGGCAAGGTAAATGTGTATCTTTATTTATGTTTATAATATCCTTTTTAAATTATACTTCATTAACTACTCTACTTTTTCTTTTTCAAAATAATAATTACTCTAGTTTTTTTAATTAAAAAAACAAGTACTTATGATAGGTAAAATTTGTTTTAAAACTTTTTAAATGTTCAGTAATTAGTAATATCTTTTTTATATTCCATTGATTCCACAGGAGAACTAAATCCTCTTTTTAACTTATTTGGAGCAAGAACTAAGTTAATGATTAAAGTTGCAAAACTTTCCAAGGTTCAAGTTAAGCGTAATTTGATGAAATTGAGAAGTTATATAACCTAACAAGTTTAGAGGTGAAATAGGTTGTATTGTACTCGTAAGTGCAATGGTGTATTTATTAATTTAAATATATTGCAAGTTTAAGATTAGAATTACAATAATGCTGCTTACTAAATCAATCAAACCAAGAAAGGTAAATCATAATGATTTGTGTTGAAGTAGAATAATTGATTGTGGTAGGCTGGAGAGCCATTGTATGTTCTATTGTGCTGCTGGCTAGCAGCCGTGGGAGCTGGTTTGCTTAAATCAGAGGAAATTTTGGAAGGAGTAGCAAGGCTTAGGATTTCAAATGATATTGAGTTTGAAGAAGAGACTTTCCTTGCTATGATGAATGAGGCTAGAGAGGTTTGTTACTCATATCATACATATATTTTTCCACTTTAAAGTCTCATTTTGCCTAAAAGAATAAAACGATGTTCATCTATGTATATAGAAACGAGAAAAACTAAAAGCGGCTGTTCCGAACATTCCGATGGAGGTTCGAATCGAGAAAGCACTTGATGCCATTTACGTTTGTTCATTTGGGAGAGACCCAATAGAGGAAGATGATGAGAAACTTTTAGTCATCATGTTGAGTGCTGTTTTTCCATCTGTTGGGGAAATTGAGATTCAGAGGATTTTGAAAGAGAAAGCAATTAGAATTGCTGAAGGTAAGGACACTGCCATTGTTCCAGAGCCACAGCCTTTGTCAAAAGAAGCTATTTTAGCCCAAATGAAGGACCTCCAATTTCTCCAAGAGAATAATGAAACTTAAGAGTCATAATTTAGTTTAGTTTGTTTGGTTGTTTTGTCAATTTGTAAGAGTTTGAATCTTTTGCTCCACAGTTTTCTAAAGTTGGCTGTTAATTATGGTATCTATATGATTCGAGATTAGAGGAGTGAGTTTAATTAAAATCCAATTAATATAGTTTGTTCATAAATCTAAAACGTTCTTTTTGGACATTGTTTGAGATGAGATACAATATAGCCGTATTCGTCAATCCAAACATAATTTAAAAGATAATGCACTAATCATCATCTCATTGATCATCTACCCCGATATCTGTTAAACTAAAGAAAAGAGAAACCAATCT

Coding sequence (CDS)

ATGAAGGCGGCGTCGGCACTGACATTATCGATTTTGCGGAGTTTCGTAGACGAGTTGGGAAGAAATGTACGATTATGGAGTCTAAAGCTTTCTATGAATTTCAAGAAAGAAAAGGCTGGAGAGCCATTGTATGTTCTATTGTGCTGCTGGCTAGCAGCCGTGGGAGCTGGTTTGCTTAAATCAGAGGAAATTTTGGAAGGAGTAGCAAGGCTTAGGATTTCAAATGATATTGAGTTTGAAGAAGAGACTTTCCTTGCTATGATGAATGAGGCTAGAGAGAAACGAGAAAAACTAAAAGCGGCTGTTCCGAACATTCCGATGGAGGTTCGAATCGAGAAAGCACTTGATGCCATTTACGTTTGTTCATTTGGGAGAGACCCAATAGAGGAAGATGATGAGAAACTTTTAGTCATCATGTTGAGTGCTGTTTTTCCATCTGTTGGGGAAATTGAGATTCAGAGGATTTTGAAAGAGAAAGCAATTAGAATTGCTGAAGGTAAGGACACTGCCATTGTTCCAGAGCCACAGCCTTTGTCAAAAGAAGCTATTTTAGCCCAAATGAAGGACCTCCAATTTCTCCAAGAGAATAATGAAACTTAA

Protein sequence

MKAASALTLSILRSFVDELGRNVRLWSLKLSMNFKKEKAGEPLYVLLCCWLAAVGAGLLKSEEILEGVARLRISNDIEFEEETFLAMMNEAREKREKLKAAVPNIPMEVRIEKALDAIYVCSFGRDPIEEDDEKLLVIMLSAVFPSVGEIEIQRILKEKAIRIAEGKDTAIVPEPQPLSKEAILAQMKDLQFLQENNET

Homology

[Close]

BLAST of Cucsat.G13280 vs. ExPASy Swiss-Prot
Match: Q9M3C6 (Photosystem I assembly factor PSA3, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PSA3 PE=1 SV=1)

HSP 1 Score: 292.0 bits (746), Expect = 7.8e-78
Identity = 154/244 (63.11%), Postives = 188/244 (77.05%), Query Frame = 0


Query: 21  SSSLHS-NPKFFF--LSNPISPSPLFLRKLYGRRRNPNSAGAFSIKAYMESPNSLSGFAS 80
           S+S H  +P FF   L NP + S          R   +   A SI+AY+E PNS S FA+
Sbjct: 8   STSFHQISPSFFHLRLRNPSTTS--------SSRPKLDGGFALSIRAYIEKPNSFSTFAN 67

Query: 81  KVIGSLPVVGLIARILSDEGGVGTDIIDFAEFRRRVGKKCTIMESKAFYEFQERKGKAGE 140
           KVIGSLPV+GL+ARI+SDEGGVG D++DFAEFR+RVG KCT  +S+AFYEFQ+R+GKAGE
Sbjct: 68  KVIGSLPVIGLLARIISDEGGVGRDLVDFAEFRKRVGNKCTPDDSRAFYEFQQRRGKAGE 127

Query: 141 PLYVLLCCWLAAVGAGLLKSEEILEGVARLRISNDIEFEEETFLAMMNEAREKREKLKAA 200
           PLYVLLCCW+AAVGAGLLKSEEILEGV R+ ISND+EFEE+ F+A+M EAR++R KL   
Sbjct: 128 PLYVLLCCWVAAVGAGLLKSEEILEGVTRVSISNDLEFEEQNFIALMTEARQRRAKLNID 187

Query: 201 VPNIPMEVRIEKALDAIYVCSFGRDPIEEDDEKLLVIMLSAVFPSVGEIEIQRILKEKAI 260
            P IPME+R+EKAL+ IY C F R  IEE+DEKLL +ML AVFPSV + EI+RI+KEKA 
Sbjct: 188 APTIPMELRVEKALEGIYACCFRRGLIEEEDEKLLKVMLIAVFPSVEKSEIERIIKEKAT 243

Query: 261 RIAE 262
           R+ E
Sbjct: 248 RVEE 243

[Close]

BLAST of Cucsat.G13280 vs. ExPASy Swiss-Prot
Match: B4FSG1 (Photosystem I assembly factor PSA3, chloroplastic OS=Zea mays OX=4577 GN=PSA3 PE=2 SV=1)

HSP 1 Score: 280.0 bits (715), Expect = 3.1e-74
Identity = 137/205 (66.83%), Postives = 172/205 (83.90%), Query Frame = 0


Query: 61  SIKAYME-SPNSLSGFASKVIGSLPVVGLIARILSDEGGVGTDIIDFAEFRRRVGKKCTI 120
           ++ AYME +PNS +  A +++G+LP+VGL+ARIL+DEGGVG DIIDFAEFRRRV KKCT+
Sbjct: 35  AVVAYMEPNPNSPAAIAGRLVGALPIVGLVARILNDEGGVGGDIIDFAEFRRRVSKKCTV 94

Query: 121 MESKAFYEFQERKGKAGEPLYVLLCCWLAAVGAGLLKSEEILEGVARLRISNDIEFEEET 180
           M+SKAFY+F +R+GK G+P YVLLCCWLAA+GAGLLK+EEILEGVARLRISNDIEFEEET
Sbjct: 95  MDSKAFYDFNQRRGKPGDPFYVLLCCWLAAIGAGLLKTEEILEGVARLRISNDIEFEEET 154

Query: 181 FLAMMNEAREKREKLKAAVPNIPMEVRIEKALDAIYVCSFGRDPIEEDDEKLLVIMLSAV 240
           F+ MM  A+EKR KLKA  P IPME R EKAL+AIYVC FG+D +E++DEKLL  +L+AV
Sbjct: 155 FIDMMRAAKEKRAKLKAPAPQIPMETRAEKALEAIYVCCFGQDMVEDEDEKLLRAILNAV 214

Query: 241 FPSVGEIEIQRILKEKAIRIAEVEQ 265
           FPSVG   ++R++   A ++A  E+
Sbjct: 215 FPSVGRAAVERMVASMAKQVASGER 239

[Close]

BLAST of Cucsat.G13280 vs. NCBI nr
Match: XP_004141087.1 (photosystem I assembly factor PSA3, chloroplastic [Cucumis sativus] >KGN59665.1 hypothetical protein Csa_000816 [Cucumis sativus])

HSP 1 Score: 479 bits (1232), Expect = 1.08e-168
Identity = 250/250 (100.00%), Postives = 250/250 (100.00%), Query Frame = 0


Query: 12  MSVTSTSTTSSSLHSNPKFFFLSNPISPSPLFLRKLYGRRRNPNSAGAFSIKAYMESPNS 71
           MSVTSTSTTSSSLHSNPKFFFLSNPISPSPLFLRKLYGRRRNPNSAGAFSIKAYMESPNS
Sbjct: 1   MSVTSTSTTSSSLHSNPKFFFLSNPISPSPLFLRKLYGRRRNPNSAGAFSIKAYMESPNS 60

Query: 72  LSGFASKVIGSLPVVGLIARILSDEGGVGTDIIDFAEFRRRVGKKCTIMESKAFYEFQER 131
           LSGFASKVIGSLPVVGLIARILSDEGGVGTDIIDFAEFRRRVGKKCTIMESKAFYEFQER
Sbjct: 61  LSGFASKVIGSLPVVGLIARILSDEGGVGTDIIDFAEFRRRVGKKCTIMESKAFYEFQER 120

Query: 132 KGKAGEPLYVLLCCWLAAVGAGLLKSEEILEGVARLRISNDIEFEEETFLAMMNEAREKR 191
           KGKAGEPLYVLLCCWLAAVGAGLLKSEEILEGVARLRISNDIEFEEETFLAMMNEAREKR
Sbjct: 121 KGKAGEPLYVLLCCWLAAVGAGLLKSEEILEGVARLRISNDIEFEEETFLAMMNEAREKR 180

Query: 192 EKLKAAVPNIPMEVRIEKALDAIYVCSFGRDPIEEDDEKLLVIMLSAVFPSVGEIEIQRI 251
           EKLKAAVPNIPMEVRIEKALDAIYVCSFGRDPIEEDDEKLLVIMLSAVFPSVGEIEIQRI
Sbjct: 181 EKLKAAVPNIPMEVRIEKALDAIYVCSFGRDPIEEDDEKLLVIMLSAVFPSVGEIEIQRI 240

Query: 252 LKEKAIRIAE 261
           LKEKAIRIAE
Sbjct: 241 LKEKAIRIAE 250

[Close]

BLAST of Cucsat.G13280 vs. NCBI nr
Match: XP_008443515.1 (PREDICTED: uncharacterized protein LOC103487086 [Cucumis melo] >KAA0053674.1 putative ubiquinone biosynthesis UbiB [Cucumis melo var. makuwa] >TYK14001.1 putative ubiquinone biosynthesis UbiB [Cucumis melo var. makuwa])

HSP 1 Score: 457 bits (1176), Expect = 3.63e-160
Identity = 237/256 (92.58%), Postives = 249/256 (97.27%), Query Frame = 0


Query: 12  MSVTSTSTTSSSLHSNPKFFFLSNPISPSPLFLRKLYGRRRNPNSAGAFSIKAYMESPNS 71
           MSVTSTSTTSSSLHSNPK FFLSNPISPS LFL +LYGRRR+ NSAGAFSIKAYME+PNS
Sbjct: 1   MSVTSTSTTSSSLHSNPKSFFLSNPISPSRLFLPQLYGRRRSSNSAGAFSIKAYMENPNS 60

Query: 72  LSGFASKVIGSLPVVGLIARILSDEGGVGTDIIDFAEFRRRVGKKCTIMESKAFYEFQER 131
           LSGFASKVIGSLPVVGLIARI+SDEGGVG+D+IDFAEFRRRVGKKCTIMESKAFYEFQER
Sbjct: 61  LSGFASKVIGSLPVVGLIARIMSDEGGVGSDLIDFAEFRRRVGKKCTIMESKAFYEFQER 120

Query: 132 KGKAGEPLYVLLCCWLAAVGAGLLKSEEILEGVARLRISNDIEFEEETFLAMMNEAREKR 191
           KGKAGEPLYVLLCCWLAAVGAGLLKSEEILEGVARLRISNDIEFEEETF+AMMNEAREKR
Sbjct: 121 KGKAGEPLYVLLCCWLAAVGAGLLKSEEILEGVARLRISNDIEFEEETFIAMMNEAREKR 180

Query: 192 EKLKAAVPNIPMEVRIEKALDAIYVCSFGRDPIEEDDEKLLVIMLSAVFPSVGEIEIQRI 251
           EKLKAAVPNIPMEVR+EKALDAIYVCSFGRDPIEEDDEKLLVIMLSAVFPSVGEIEIQRI
Sbjct: 181 EKLKAAVPNIPMEVRVEKALDAIYVCSFGRDPIEEDDEKLLVIMLSAVFPSVGEIEIQRI 240

Query: 252 LKEKAIRIAEVEQLVL 267
           +KEKAIRIAE + + +
Sbjct: 241 VKEKAIRIAEGKDIAI 256

[Close]

BLAST of Cucsat.G13280 vs. NCBI nr
Match: XP_038905081.1 (photosystem I assembly factor PSA3, chloroplastic [Benincasa hispida])

HSP 1 Score: 438 bits (1127), Expect = 1.05e-152
Identity = 229/256 (89.45%), Postives = 241/256 (94.14%), Query Frame = 0


Query: 12  MSVTSTSTTSSSLHSNPKFFFLSNPISPSPLFLRKLYGRRRNPNSAGAFSIKAYMESPNS 71
           MSVTSTS+TSSSLHSN K FFLS PISPS LFLR++YGRRR  NSAG  S+KAYME+PNS
Sbjct: 1   MSVTSTSSTSSSLHSNLKSFFLSKPISPSRLFLRQIYGRRRQSNSAGVLSVKAYMENPNS 60

Query: 72  LSGFASKVIGSLPVVGLIARILSDEGGVGTDIIDFAEFRRRVGKKCTIMESKAFYEFQER 131
           LSGFA+KVIGSLPVVGLIARILSDEGGVG+DIIDFAEFRRRVGKKCTIMESKAFYEFQER
Sbjct: 61  LSGFANKVIGSLPVVGLIARILSDEGGVGSDIIDFAEFRRRVGKKCTIMESKAFYEFQER 120

Query: 132 KGKAGEPLYVLLCCWLAAVGAGLLKSEEILEGVARLRISNDIEFEEETFLAMMNEAREKR 191
           KGKAGEPLYVLLCCWLAAVGAGLLKSEEILEGVARLRISNDIEFEEETFLAMMNEAREKR
Sbjct: 121 KGKAGEPLYVLLCCWLAAVGAGLLKSEEILEGVARLRISNDIEFEEETFLAMMNEAREKR 180

Query: 192 EKLKAAVPNIPMEVRIEKALDAIYVCSFGRDPIEEDDEKLLVIMLSAVFPSVGEIEIQRI 251
           EKLK AVPNIPMEVR+EKALDAIYVCSFGRDPIEEDDEKLLVIMLSAVF SV E EIQRI
Sbjct: 181 EKLKVAVPNIPMEVRVEKALDAIYVCSFGRDPIEEDDEKLLVIMLSAVFASVRETEIQRI 240

Query: 252 LKEKAIRIAEVEQLVL 267
           +KEKAIRIAE + + +
Sbjct: 241 VKEKAIRIAEGKDIAI 256

[Close]

BLAST of Cucsat.G13280 vs. NCBI nr
Match: XP_023530868.1 (photosystem I assembly factor PSA3, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 407 bits (1045), Expect = 3.39e-140
Identity = 212/259 (81.85%), Postives = 236/259 (91.12%), Query Frame = 0


Query: 12  MSVTSTSTTSSSLHSNPKFFFLSNPISPSPLFLRKLYG---RRRNPNSAGAFSIKAYMES 71
           M+VTSTSTTSS  HSNPK FFLS+ ISP  L  RK +G   RRR+PNS G  S++AYME+
Sbjct: 1   MAVTSTSTTSS-FHSNPKSFFLSSLISPPKLLHRKFHGSVGRRRHPNSTGVLSVRAYMEN 60

Query: 72  PNSLSGFASKVIGSLPVVGLIARILSDEGGVGTDIIDFAEFRRRVGKKCTIMESKAFYEF 131
           PNSLSGFA+KVIGSLPVVGLIARILSDEGGVG+DIIDFAEFRRRVGKKCTIM+SKAFY+F
Sbjct: 61  PNSLSGFANKVIGSLPVVGLIARILSDEGGVGSDIIDFAEFRRRVGKKCTIMDSKAFYDF 120

Query: 132 QERKGKAGEPLYVLLCCWLAAVGAGLLKSEEILEGVARLRISNDIEFEEETFLAMMNEAR 191
           QER+GK GEPL+VL+CCWLAAVGAGLLKSEEILEGVARLRIS+DIEFEEETFLAMMNEAR
Sbjct: 121 QERRGKPGEPLFVLMCCWLAAVGAGLLKSEEILEGVARLRISDDIEFEEETFLAMMNEAR 180

Query: 192 EKREKLKAAVPNIPMEVRIEKALDAIYVCSFGRDPIEEDDEKLLVIMLSAVFPSVGEIEI 251
           EKREKLK AV  IPMEVR+EKALDAIYVCSFGRDPIEEDDEKLLVIMLS+VFP+VG+ EI
Sbjct: 181 EKREKLKVAVSKIPMEVRVEKALDAIYVCSFGRDPIEEDDEKLLVIMLSSVFPTVGQTEI 240

Query: 252 QRILKEKAIRIAEVEQLVL 267
           QRI+KEKA+RIAE + + +
Sbjct: 241 QRIVKEKAVRIAEGKDIAI 258

[Close]

BLAST of Cucsat.G13280 vs. NCBI nr
Match: KAG6588962.1 (Photosystem I assembly factor PSA3, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 405 bits (1042), Expect = 9.71e-140
Identity = 213/260 (81.92%), Postives = 237/260 (91.15%), Query Frame = 0


Query: 12  MSVTSTSTTSSSLHSNPKFFFLSNPISPSPLFLRKLY----GRRRNPNSAGAFSIKAYME 71
           M+VTSTSTTSS  HSNPK FFLS+ ISP P FL + +    GRRR+P S G  S++AYME
Sbjct: 1   MAVTSTSTTSS-FHSNPKSFFLSSLISP-PKFLHRQFHGSVGRRRHPTSTGVLSVRAYME 60

Query: 72  SPNSLSGFASKVIGSLPVVGLIARILSDEGGVGTDIIDFAEFRRRVGKKCTIMESKAFYE 131
           +PNSLSGFA+KVIGSLPVVGLIARILSDEGGVG+DIIDFAEFRRRVGKKCTIM+SKAFY+
Sbjct: 61  NPNSLSGFANKVIGSLPVVGLIARILSDEGGVGSDIIDFAEFRRRVGKKCTIMDSKAFYD 120

Query: 132 FQERKGKAGEPLYVLLCCWLAAVGAGLLKSEEILEGVARLRISNDIEFEEETFLAMMNEA 191
           FQER+GK GEPL+VLLCCWLAAVGAGLLKSEEILEGVARLRIS+DIEFEEETFLAMMNEA
Sbjct: 121 FQERRGKPGEPLFVLLCCWLAAVGAGLLKSEEILEGVARLRISDDIEFEEETFLAMMNEA 180

Query: 192 REKREKLKAAVPNIPMEVRIEKALDAIYVCSFGRDPIEEDDEKLLVIMLSAVFPSVGEIE 251
           REKREKLK AVP IPMEVR+EKALDAIYVCSFGRDPIEEDDEKLLVIMLS+VFP+VG+ E
Sbjct: 181 REKREKLKVAVPKIPMEVRVEKALDAIYVCSFGRDPIEEDDEKLLVIMLSSVFPTVGQSE 240

Query: 252 IQRILKEKAIRIAEVEQLVL 267
           IQRI+KEKA+RIAE + + +
Sbjct: 241 IQRIVKEKAVRIAEGKDIAI 258

[Close]

BLAST of Cucsat.G13280 vs. ExPASy TrEMBL
Match: A0A0A0LCC2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G836490 PE=4 SV=1)

HSP 1 Score: 479 bits (1232), Expect = 5.21e-169
Identity = 250/250 (100.00%), Postives = 250/250 (100.00%), Query Frame = 0


Query: 12  MSVTSTSTTSSSLHSNPKFFFLSNPISPSPLFLRKLYGRRRNPNSAGAFSIKAYMESPNS 71
           MSVTSTSTTSSSLHSNPKFFFLSNPISPSPLFLRKLYGRRRNPNSAGAFSIKAYMESPNS
Sbjct: 1   MSVTSTSTTSSSLHSNPKFFFLSNPISPSPLFLRKLYGRRRNPNSAGAFSIKAYMESPNS 60

Query: 72  LSGFASKVIGSLPVVGLIARILSDEGGVGTDIIDFAEFRRRVGKKCTIMESKAFYEFQER 131
           LSGFASKVIGSLPVVGLIARILSDEGGVGTDIIDFAEFRRRVGKKCTIMESKAFYEFQER
Sbjct: 61  LSGFASKVIGSLPVVGLIARILSDEGGVGTDIIDFAEFRRRVGKKCTIMESKAFYEFQER 120

Query: 132 KGKAGEPLYVLLCCWLAAVGAGLLKSEEILEGVARLRISNDIEFEEETFLAMMNEAREKR 191
           KGKAGEPLYVLLCCWLAAVGAGLLKSEEILEGVARLRISNDIEFEEETFLAMMNEAREKR
Sbjct: 121 KGKAGEPLYVLLCCWLAAVGAGLLKSEEILEGVARLRISNDIEFEEETFLAMMNEAREKR 180

Query: 192 EKLKAAVPNIPMEVRIEKALDAIYVCSFGRDPIEEDDEKLLVIMLSAVFPSVGEIEIQRI 251
           EKLKAAVPNIPMEVRIEKALDAIYVCSFGRDPIEEDDEKLLVIMLSAVFPSVGEIEIQRI
Sbjct: 181 EKLKAAVPNIPMEVRIEKALDAIYVCSFGRDPIEEDDEKLLVIMLSAVFPSVGEIEIQRI 240

Query: 252 LKEKAIRIAE 261
           LKEKAIRIAE
Sbjct: 241 LKEKAIRIAE 250

[Close]

BLAST of Cucsat.G13280 vs. ExPASy TrEMBL
Match: A0A5D3CQC9 (Putative ubiquinone biosynthesis UbiB OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1119G00270 PE=4 SV=1)

HSP 1 Score: 457 bits (1176), Expect = 1.76e-160
Identity = 237/256 (92.58%), Postives = 249/256 (97.27%), Query Frame = 0


Query: 12  MSVTSTSTTSSSLHSNPKFFFLSNPISPSPLFLRKLYGRRRNPNSAGAFSIKAYMESPNS 71
           MSVTSTSTTSSSLHSNPK FFLSNPISPS LFL +LYGRRR+ NSAGAFSIKAYME+PNS
Sbjct: 1   MSVTSTSTTSSSLHSNPKSFFLSNPISPSRLFLPQLYGRRRSSNSAGAFSIKAYMENPNS 60

Query: 72  LSGFASKVIGSLPVVGLIARILSDEGGVGTDIIDFAEFRRRVGKKCTIMESKAFYEFQER 131
           LSGFASKVIGSLPVVGLIARI+SDEGGVG+D+IDFAEFRRRVGKKCTIMESKAFYEFQER
Sbjct: 61  LSGFASKVIGSLPVVGLIARIMSDEGGVGSDLIDFAEFRRRVGKKCTIMESKAFYEFQER 120

Query: 132 KGKAGEPLYVLLCCWLAAVGAGLLKSEEILEGVARLRISNDIEFEEETFLAMMNEAREKR 191
           KGKAGEPLYVLLCCWLAAVGAGLLKSEEILEGVARLRISNDIEFEEETF+AMMNEAREKR
Sbjct: 121 KGKAGEPLYVLLCCWLAAVGAGLLKSEEILEGVARLRISNDIEFEEETFIAMMNEAREKR 180

Query: 192 EKLKAAVPNIPMEVRIEKALDAIYVCSFGRDPIEEDDEKLLVIMLSAVFPSVGEIEIQRI 251
           EKLKAAVPNIPMEVR+EKALDAIYVCSFGRDPIEEDDEKLLVIMLSAVFPSVGEIEIQRI
Sbjct: 181 EKLKAAVPNIPMEVRVEKALDAIYVCSFGRDPIEEDDEKLLVIMLSAVFPSVGEIEIQRI 240

Query: 252 LKEKAIRIAEVEQLVL 267
           +KEKAIRIAE + + +
Sbjct: 241 VKEKAIRIAEGKDIAI 256

[Close]

BLAST of Cucsat.G13280 vs. ExPASy TrEMBL
Match: A0A1S3B876 (uncharacterized protein LOC103487086 OS=Cucumis melo OX=3656 GN=LOC103487086 PE=4 SV=1)

HSP 1 Score: 457 bits (1176), Expect = 1.76e-160
Identity = 237/256 (92.58%), Postives = 249/256 (97.27%), Query Frame = 0


Query: 12  MSVTSTSTTSSSLHSNPKFFFLSNPISPSPLFLRKLYGRRRNPNSAGAFSIKAYMESPNS 71
           MSVTSTSTTSSSLHSNPK FFLSNPISPS LFL +LYGRRR+ NSAGAFSIKAYME+PNS
Sbjct: 1   MSVTSTSTTSSSLHSNPKSFFLSNPISPSRLFLPQLYGRRRSSNSAGAFSIKAYMENPNS 60

Query: 72  LSGFASKVIGSLPVVGLIARILSDEGGVGTDIIDFAEFRRRVGKKCTIMESKAFYEFQER 131
           LSGFASKVIGSLPVVGLIARI+SDEGGVG+D+IDFAEFRRRVGKKCTIMESKAFYEFQER
Sbjct: 61  LSGFASKVIGSLPVVGLIARIMSDEGGVGSDLIDFAEFRRRVGKKCTIMESKAFYEFQER 120

Query: 132 KGKAGEPLYVLLCCWLAAVGAGLLKSEEILEGVARLRISNDIEFEEETFLAMMNEAREKR 191
           KGKAGEPLYVLLCCWLAAVGAGLLKSEEILEGVARLRISNDIEFEEETF+AMMNEAREKR
Sbjct: 121 KGKAGEPLYVLLCCWLAAVGAGLLKSEEILEGVARLRISNDIEFEEETFIAMMNEAREKR 180

Query: 192 EKLKAAVPNIPMEVRIEKALDAIYVCSFGRDPIEEDDEKLLVIMLSAVFPSVGEIEIQRI 251
           EKLKAAVPNIPMEVR+EKALDAIYVCSFGRDPIEEDDEKLLVIMLSAVFPSVGEIEIQRI
Sbjct: 181 EKLKAAVPNIPMEVRVEKALDAIYVCSFGRDPIEEDDEKLLVIMLSAVFPSVGEIEIQRI 240

Query: 252 LKEKAIRIAEVEQLVL 267
           +KEKAIRIAE + + +
Sbjct: 241 VKEKAIRIAEGKDIAI 256

[Close]

BLAST of Cucsat.G13280 vs. ExPASy TrEMBL
Match: A0A6J1EQR9 (photosystem I assembly factor PSA3, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111435039 PE=4 SV=1)

HSP 1 Score: 404 bits (1038), Expect = 1.91e-139
Identity = 211/259 (81.47%), Postives = 235/259 (90.73%), Query Frame = 0


Query: 12  MSVTSTSTTSSSLHSNPKFFFLSNPISPSPLFLRKLYG---RRRNPNSAGAFSIKAYMES 71
           M+VTSTSTTSS  HSNPK FFL + ISP  L  R+ +G   RRR+P S G  S++AYME+
Sbjct: 1   MAVTSTSTTSS-FHSNPKSFFLYSLISPPKLLHRQFHGSVGRRRHPTSTGVLSVRAYMEN 60

Query: 72  PNSLSGFASKVIGSLPVVGLIARILSDEGGVGTDIIDFAEFRRRVGKKCTIMESKAFYEF 131
           PNSLSGFA+KVIGSLPVVGLIARILSDEGGVG+DIIDFAEFRRRVGKKCTIM+SKAFY+F
Sbjct: 61  PNSLSGFANKVIGSLPVVGLIARILSDEGGVGSDIIDFAEFRRRVGKKCTIMDSKAFYDF 120

Query: 132 QERKGKAGEPLYVLLCCWLAAVGAGLLKSEEILEGVARLRISNDIEFEEETFLAMMNEAR 191
           QER+GK GEPL+VLLCCWLAAVGAGLLKSEEILEGVARLRIS+DIEFEEETFLAMMNEAR
Sbjct: 121 QERRGKPGEPLFVLLCCWLAAVGAGLLKSEEILEGVARLRISDDIEFEEETFLAMMNEAR 180

Query: 192 EKREKLKAAVPNIPMEVRIEKALDAIYVCSFGRDPIEEDDEKLLVIMLSAVFPSVGEIEI 251
           EKREKLK AVP IPMEVR+EKALDAIYVCSFGRDPIEEDDEKLLVIMLS+VFP+VG+ EI
Sbjct: 181 EKREKLKVAVPKIPMEVRVEKALDAIYVCSFGRDPIEEDDEKLLVIMLSSVFPTVGQSEI 240

Query: 252 QRILKEKAIRIAEVEQLVL 267
           QRI+KEKA+RIAE + + +
Sbjct: 241 QRIVKEKAVRIAEGKDIAI 258

[Close]

BLAST of Cucsat.G13280 vs. ExPASy TrEMBL
Match: A0A6J1JJA4 (photosystem I assembly factor PSA3, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111486319 PE=4 SV=1)

HSP 1 Score: 398 bits (1022), Expect = 5.18e-137
Identity = 208/259 (80.31%), Postives = 233/259 (89.96%), Query Frame = 0


Query: 12  MSVTSTSTTSSSLHSNPKFFFLSNPISPSPLFLRKLYG---RRRNPNSAGAFSIKAYMES 71
           M+VTSTSTTSS  HSNPK FFLS+ ISP  L  R+ +G   RRR+P S G  S++AYME+
Sbjct: 1   MAVTSTSTTSS-FHSNPKSFFLSSLISPPKLLHRQFHGSVGRRRHPTSTGVLSVRAYMEN 60

Query: 72  PNSLSGFASKVIGSLPVVGLIARILSDEGGVGTDIIDFAEFRRRVGKKCTIMESKAFYEF 131
           PNSLSGFA+KVIGSLPVVGLIARILSDEGGVG+DIIDFAEFRRRVGKKCTIM+SKAFY+F
Sbjct: 61  PNSLSGFANKVIGSLPVVGLIARILSDEGGVGSDIIDFAEFRRRVGKKCTIMDSKAFYDF 120

Query: 132 QERKGKAGEPLYVLLCCWLAAVGAGLLKSEEILEGVARLRISNDIEFEEETFLAMMNEAR 191
           QER+GK GEPL+VLLCCWLAAVGAGLLKSEEI EGVARLRIS+DIEFEEETFLAMMNEAR
Sbjct: 121 QERRGKPGEPLFVLLCCWLAAVGAGLLKSEEIFEGVARLRISDDIEFEEETFLAMMNEAR 180

Query: 192 EKREKLKAAVPNIPMEVRIEKALDAIYVCSFGRDPIEEDDEKLLVIMLSAVFPSVGEIEI 251
           EKREKLK AV  IPMEVR+EKALDAIYVCSFGRDPIEE DEKLLVIMLS+VFP+VG+ EI
Sbjct: 181 EKREKLKVAVSKIPMEVRVEKALDAIYVCSFGRDPIEEHDEKLLVIMLSSVFPTVGQSEI 240

Query: 252 QRILKEKAIRIAEVEQLVL 267
           QR++KEKA+RIAE + + +
Sbjct: 241 QRMVKEKAVRIAEGKDIAI 258

The following BLAST results are available for this feature:

BLAST of Cucsat.G13280 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9M3C6	7.8e-78	63.11	Photosystem I assembly factor PSA3, chloroplastic OS=Arabidopsis thaliana OX=370...	[more]
B4FSG1	3.1e-74	66.83	Photosystem I assembly factor PSA3, chloroplastic OS=Zea mays OX=4577 GN=PSA3 PE...	[more]

BLAST of Cucsat.G13280 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004141087.1	1.08e-168	100.00	photosystem I assembly factor PSA3, chloroplastic [Cucumis sativus] >KGN59665.1 ...	[more]
XP_008443515.1	3.63e-160	92.58	PREDICTED: uncharacterized protein LOC103487086 [Cucumis melo] >KAA0053674.1 put...	[more]
XP_038905081.1	1.05e-152	89.45	photosystem I assembly factor PSA3, chloroplastic [Benincasa hispida]	[more]
XP_023530868.1	3.39e-140	81.85	photosystem I assembly factor PSA3, chloroplastic [Cucurbita pepo subsp. pepo]	[more]
KAG6588962.1	9.71e-140	81.92	Photosystem I assembly factor PSA3, chloroplastic, partial [Cucurbita argyrosper...	[more]

BLAST of Cucsat.G13280 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LCC2	5.21e-169	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G836490 PE=4 SV=1	[more]
A0A5D3CQC9	1.76e-160	92.58	Putative ubiquinone biosynthesis UbiB OS=Cucumis melo var. makuwa OX=1194695 GN=...	[more]
A0A1S3B876	1.76e-160	92.58	uncharacterized protein LOC103487086 OS=Cucumis melo OX=3656 GN=LOC103487086 PE=...	[more]
A0A6J1EQR9	1.91e-139	81.47	photosystem I assembly factor PSA3, chloroplastic OS=Cucurbita moschata OX=3662 ...	[more]
A0A6J1JJA4	5.18e-137	80.31	photosystem I assembly factor PSA3, chloroplastic OS=Cucurbita maxima OX=3661 GN...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (B10) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR037736	Photosystem I assembly factor PSA3	PANTHER	PTHR36770	PHOTOSYSTEM I ASSEMBLY FACTOR PSA3, CHLOROPLASTIC	coord: 37..193

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsat.G13280.T5	Cucsat.G13280.T5	mRNA
Cucsat.G13280.T1	Cucsat.G13280.T1	mRNA
Cucsat.G13280.T3	Cucsat.G13280.T3	mRNA
Cucsat.G13280.T4	Cucsat.G13280.T4	mRNA
Cucsat.G13280.T2	Cucsat.G13280.T2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0048564	photosystem I assembly
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0098572	stromal side of plastid thylakoid membrane