Cucsat.G13206.T6 (mRNA) Cucumber (B10) v3

Overview


Name	Cucsat.G13206.T6
Type	mRNA
Organism	Cucumis sativus L. var. sativus cv B10 (Cucumber (B10) v3)
Description	mediator of RNA polymerase II transcription subunit 15a-like
Location	ctg1838: 2203478 .. 2204821 (+)
RNA-Seq Expression	Cucsat.G13206.T6
Synteny	Cucsat.G13206.T6

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

CCCCTAAACCCAAAAGAAGAAACTGCTTCTACTACTCACTTCTTTCAAACTCTCCGTTTTCCTCTTCTTTCCCTCTCTTTCCCTCTCTCCATCTCCATTCTATTTCTCACTCTTTTTCTCATATCCTTCTCTCTTCACTTCCTTCAATCACTCCATCCCTTGATTCTACCTTCCTCTCTGATTATGTAGGGTTTTTTTTTTTTTTCTTTTTTTTCTTTCTGTTTGCTTACTGGACAAGAAAGCTAGTATGGCTACTCCAACTGATTGGAGGACGGAAATAACTCAAGAAACTAGACAGCAAATTGTTCGTTCAATGTAATATTTCCTAAACTTGTACTCTGCTTTATTTATTTATTTATTTTAGACTTTTTAAGTGCTGCTTATTGATGTTTGATTACGATTACTTTGTTGCCTTTTTTTTTTCTAATTTCGTTGTTGAATTGAAAATTTCGTGCATTATTGCTTGAGTTTTACTCGATTTCCATTGATTTCTTGAATTATGAATTTGTGGATTTTATTGATAATAGTATGATATTGCAGATATATGATGTTGAAGGAACAGCCTTCTGAGTTGAATGTGAAACTAATTAGTGACCGTGCGAGGAAACATGAGATGAACTTGTTTAGTACTGCCAAATCTAAGGTATTATTAGTGAATTTTTCAATGTTTTCTAATATGAAACTGATGTTTTTCGTGCATTTGTGTTTTATTGTGTACTTTCCAATATTTGTGATCTAATCTGCTTATGCTTCTCAGGAAGAATATTTGTCTACTGGAACTGGAAAGATGATTAAGAGAGAAAATCACCAGGGGAGTTCAAGCGGTCAAGCAGTAGTGGTTTATCCGCAATATCATCAGCCAGCAGAGGCTAAGTCACTTTTGCTGCAACATATTCAGCGAACGCCACAGCTACATAGACAACATCCAAATGTGAGACAGGCACATCAACAATTTGCGATGCAGAATCAAAGCGGTGCTAGTCCACAAAATACATCAAATTCACAGTGCAGACCCCAGGGTTTCCCGAGACAAGATACTGGAATTCATCTGTCCTCAGAAATGTTCACGCAACATCCTAACTTTGTGAACTTGACCACTCAAGTTAAAAAGGTATTGAATTGTGTCTAGATGTGTAAATGGGCAGTTTGCTGGTACATCTAAATTAGATATATTGTGTTATGAAATTGAAACTGTATGTAACATAACAGGAAGTGGATAGCGAAGGTTTTATGGCCTCCAAATCCTCCGAGCAGCGTAAGCAACACTCCATGAGTGGAGCTTCTGCAGGTAAGTTTTTGTAGATGCTAAGCTTCAAATCACCTGCGATGATAATAACAACTAGC

Coding sequence (CDS)

ATGGCTACTCCAACTGATTGGAGGACGGAAATAACTCAAGAAACTAGACAGCAAATTGTTCGTTCAATATATATGATGTTGAAGGAACAGCCTTCTGAGTTGAATGTGAAACTAATTAGTGACCGTGCGAGGAAACATGAGATGAACTTGTTTAGTACTGCCAAATCTAAGGAAGAATATTTGTCTACTGGAACTGGAAAGATGATTAAGAGAGAAAATCACCAGGGGAGTTCAAGCGGTCAAGCAGTAGTGGTTTATCCGCAATATCATCAGCCAGCAGAGGCTAAGTCACTTTTGCTGCAACATATTCAGCGAACGCCACAGCTACATAGACAACATCCAAATGTGAGACAGGCACATCAACAATTTGCGATGCAGAATCAAAGCGGTGCTAGTCCACAAAATACATCAAATTCACAGTGCAGACCCCAGGGTTTCCCGAGACAAGATACTGGAATTCATCTGTCCTCAGAAATGTTCACGCAACATCCTAACTTTGTGAACTTGACCACTCAAGTTAAAAAGGAAGTGGATAGCGAAGGTTTTATGGCCTCCAAATCCTCCGAGCAGCGTAAGCAACACTCCATGAGTGGAGCTTCTGCAGGTAAGTTTTTGTAG

Protein sequence

MATPTDWRTEITQETRQQIVRSIYMMLKEQPSELNVKLISDRARKHEMNLFSTAKSKEEYLSTGTGKMIKRENHQGSSSGQAVVVYPQYHQPAEAKSLLLQHIQRTPQLHRQHPNVRQAHQQFAMQNQSGASPQNTSNSQCRPQGFPRQDTGIHLSSEMFTQHPNFVNLTTQVKKEVDSEGFMASKSSEQRKQHSMSGASAGKFL

Homology

[Close]

BLAST of Cucsat.G13206.T6 vs. NCBI nr
Match: XP_011652173.1 (uncharacterized protein LOC105434992 [Cucumis sativus] >KAE8651172.1 hypothetical protein Csa_002482 [Cucumis sativus])

HSP 1 Score: 387 bits (993), Expect = 6.14e-128
Identity = 201/201 (100.00%), Postives = 201/201 (100.00%), Query Frame = 0


Query: 1   MATPTDWRTEITQETRQQIVRSIYMMLKEQPSELNVKLISDRARKHEMNLFSTAKSKEEY 60
           MATPTDWRTEITQETRQQIVRSIYMMLKEQPSELNVKLISDRARKHEMNLFSTAKSKEEY
Sbjct: 1   MATPTDWRTEITQETRQQIVRSIYMMLKEQPSELNVKLISDRARKHEMNLFSTAKSKEEY 60

Query: 61  LSTGTGKMIKRENHQGSSSGQAVVVYPQYHQPAEAKSLLLQHIQRTPQLHRQHPNVRQAH 120
           LSTGTGKMIKRENHQGSSSGQAVVVYPQYHQPAEAKSLLLQHIQRTPQLHRQHPNVRQAH
Sbjct: 61  LSTGTGKMIKRENHQGSSSGQAVVVYPQYHQPAEAKSLLLQHIQRTPQLHRQHPNVRQAH 120

Query: 121 QQFAMQNQSGASPQNTSNSQCRPQGFPRQDTGIHLSSEMFTQHPNFVNLTTQVKKEVDSE 180
           QQFAMQNQSGASPQNTSNSQCRPQGFPRQDTGIHLSSEMFTQHPNFVNLTTQVKKEVDSE
Sbjct: 121 QQFAMQNQSGASPQNTSNSQCRPQGFPRQDTGIHLSSEMFTQHPNFVNLTTQVKKEVDSE 180

Query: 181 GFMASKSSEQRKQHSMSGASA 201
           GFMASKSSEQRKQHSMSGASA
Sbjct: 181 GFMASKSSEQRKQHSMSGASA 201

[Close]

BLAST of Cucsat.G13206.T6 vs. NCBI nr
Match: XP_008443239.1 (PREDICTED: uncharacterized protein LOC103486878 [Cucumis melo] >XP_008443241.1 PREDICTED: uncharacterized protein LOC103486878 [Cucumis melo] >XP_008443242.1 PREDICTED: uncharacterized protein LOC103486878 [Cucumis melo] >XP_016899629.1 PREDICTED: uncharacterized protein LOC103486878 [Cucumis melo] >ADN33883.1 hypothetical protein [Cucumis melo subsp. melo] >KAA0053897.1 putative tartrate dehydrogenase/decarboxylase ttuC [Cucumis melo var. makuwa] >TYK25509.1 putative tartrate dehydrogenase/decarboxylase ttuC [Cucumis melo var. makuwa])

HSP 1 Score: 240 bits (613), Expect = 3.87e-71
Identity = 135/196 (68.88%), Postives = 151/196 (77.04%), Query Frame = 0


Query: 1   MATPT-DWRTEITQETRQQIVRSIYMMLKEQPS-ELNVKLISDRARKHEMNLFSTAKSKE 60
           MAT T DWRTEIT+ETRQ+   SI+M+L+ Q S + N+ +ISD ARKHEM LFS A S +
Sbjct: 7   MATATTDWRTEITKETRQKKFHSIWMVLERQFSGQFNMNVISDHARKHEMKLFSQANSTD 66

Query: 61  EYLSTGTGKMIKRENHQGSSSGQAVVVYPQYHQPAEAKSLLLQHIQRTPQLHRQHPNVRQ 120
           EYL+ G GK+ KRENH+GSSS +A VVYPQYHQP             TPQL RQHP VRQ
Sbjct: 67  EYLNAGIGKLSKRENHRGSSSSRAAVVYPQYHQP-------------TPQLRRQHPKVRQ 126

Query: 121 AHQQFAMQNQSGASPQNTSNSQCRPQGFPRQDTGIHLSSEMFTQHPNFVNLTTQVKKEVD 180
           AHQQFAMQNQS AS QNTSNSQ RPQGF RQD GIHLSSEMFTQHPNFVNLTTQV+KE +
Sbjct: 127 AHQQFAMQNQSCASLQNTSNSQSRPQGFQRQDIGIHLSSEMFTQHPNFVNLTTQVEKEAN 186

Query: 181 SEGFMASKSSEQRKQH 194
           SEGF ASKS  Q +QH
Sbjct: 187 SEGFKASKSLHQHEQH 189

[Close]

BLAST of Cucsat.G13206.T6 vs. NCBI nr
Match: XP_038903080.1 (probable mediator of RNA polymerase II transcription subunit 15c isoform X1 [Benincasa hispida])

HSP 1 Score: 209 bits (532), Expect = 2.69e-59
Identity = 133/218 (61.01%), Postives = 145/218 (66.51%), Query Frame = 0


Query: 2   ATPTDWRTEITQETRQQIVRSIYMMLKEQPSE-----LNVKLISDRARKHEMNLFSTAKS 61
           AT TDWRTEIT ETR Q  R I MML EQ S      +N+K IS+ AR+HEM LFS AKS
Sbjct: 8   ATATDWRTEITNETRLQKFRLICMMLNEQWSAHHADGMNMKAISELAREHEMELFSMAKS 67

Query: 62  KEEYLSTGTGKMIKRENHQGSSSGQAVVVYPQYHQPAEAKSLLLQHIQRTPQLHRQHPNV 121
           K++YL+ GT KM +RENH GSSS Q  V  PQYHQ AE  SLL QHIQ T QLHRQ+ NV
Sbjct: 68  KDDYLNAGTRKMNRRENHHGSSSTQVAVPNPQYHQSAEPNSLLRQHIQPTTQLHRQNLNV 127

Query: 122 RQAHQQFAMQNQSGASPQNTSNSQCRPQGFPRQDTGIHLSSEMFTQHPNFVNL------T 181
            Q HQQF M NQ   SPQNT NSQ     F R+D GIH S EMFTQHPN VNL      T
Sbjct: 128 GQTHQQFGMHNQRHVSPQNTLNSQ-----FQRRDFGIHPSPEMFTQHPNLVNLQPNENLT 187

Query: 182 TQVKKEVDSEGFMASKSS-------EQRKQHSMSGASA 201
           TQVK+EV+ EGF ASKSS       EQ KQ    GASA
Sbjct: 188 TQVKEEVNGEGFQASKSSHQHHTAIEQYKQQQSMGASA 220

[Close]

BLAST of Cucsat.G13206.T6 vs. NCBI nr
Match: XP_038903081.1 (mediator of RNA polymerase II transcription subunit 15a-like isoform X2 [Benincasa hispida])

HSP 1 Score: 183 bits (464), Expect = 8.40e-50
Identity = 117/195 (60.00%), Postives = 129/195 (66.15%), Query Frame = 0


Query: 25  MMLKEQPSE-----LNVKLISDRARKHEMNLFSTAKSKEEYLSTGTGKMIKRENHQGSSS 84
           MML EQ S      +N+K IS+ AR+HEM LFS AKSK++YL+ GT KM +RENH GSSS
Sbjct: 1   MMLNEQWSAHHADGMNMKAISELAREHEMELFSMAKSKDDYLNAGTRKMNRRENHHGSSS 60

Query: 85  GQAVVVYPQYHQPAEAKSLLLQHIQRTPQLHRQHPNVRQAHQQFAMQNQSGASPQNTSNS 144
            Q  V  PQYHQ AE  SLL QHIQ T QLHRQ+ NV Q HQQF M NQ   SPQNT NS
Sbjct: 61  TQVAVPNPQYHQSAEPNSLLRQHIQPTTQLHRQNLNVGQTHQQFGMHNQRHVSPQNTLNS 120

Query: 145 QCRPQGFPRQDTGIHLSSEMFTQHPNFVNL------TTQVKKEVDSEGFMASKSS----- 201
           Q     F R+D GIH S EMFTQHPN VNL      TTQVK+EV+ EGF ASKSS     
Sbjct: 121 Q-----FQRRDFGIHPSPEMFTQHPNLVNLQPNENLTTQVKEEVNGEGFQASKSSHQHHT 180

[Close]

BLAST of Cucsat.G13206.T6 vs. NCBI nr
Match: XP_023528462.1 (mediator of RNA polymerase II transcription subunit 15a-like isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 128 bits (322), Expect = 2.44e-30
Identity = 102/242 (42.15%), Postives = 124/242 (51.24%), Query Frame = 0


Query: 1   MATPTDWRTEITQETRQQIVRSIYMMLKE-----QPSELNVKLISDRARKHEMNLFSTAK 60
           +AT TDW+ EI   TRQ+ VRSIY MLKE      P+ ++ + I++ A ++E   F  AK
Sbjct: 7   LATATDWKAEIKNATRQEAVRSIYAMLKEGVSSHYPNGMSSERIANLAIEYEKRFFKNAK 66

Query: 61  SKEEYLSTGTGKMIKRENHQGSSSG------------------QAVVVYPQYHQPAEAKS 120
           ++E YL+  TGKM     H+ +SS                   Q  V  P Y QPA   S
Sbjct: 67  TEEAYLNAVTGKMRSENRHESASSRVRPAFVIQPPPQMSNQPHQRAVPNPLYQQPAVLNS 126

Query: 121 LLLQHIQRTP-----QLHRQHPNVRQAHQQFAMQNQSGASPQNTSNSQCRPQGFPRQDTG 180
           L  QH Q+       QL RQ  NVRQ HQQ  M NQS  SPQ   NS C PQG       
Sbjct: 127 LPQQHTQQLRPKPHGQLQRQKLNVRQTHQQIGMHNQSFVSPQKALNSPCGPQG------- 186

Query: 181 IHLSSEMFTQHPNFVNL------TTQVKKEVDSEGFMASKSS-------EQRKQHSMSGA 201
             L S +FTQ+PN +NL      TTQVK+ V  E F ASK S       EQ+KQH   GA
Sbjct: 187 --LVSPIFTQNPNVLNLQPNENLTTQVKEGVIGEAFWASKVSHQQRPAIEQQKQHQSMGA 239

[Close]

BLAST of Cucsat.G13206.T6 vs. ExPASy TrEMBL
Match: A0A0A0LCA9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G819850 PE=4 SV=1)

HSP 1 Score: 340 bits (873), Expect = 3.62e-117
Identity = 177/177 (100.00%), Postives = 177/177 (100.00%), Query Frame = 0


Query: 25  MMLKEQPSELNVKLISDRARKHEMNLFSTAKSKEEYLSTGTGKMIKRENHQGSSSGQAVV 84
           MMLKEQPSELNVKLISDRARKHEMNLFSTAKSKEEYLSTGTGKMIKRENHQGSSSGQAVV
Sbjct: 1   MMLKEQPSELNVKLISDRARKHEMNLFSTAKSKEEYLSTGTGKMIKRENHQGSSSGQAVV 60

Query: 85  VYPQYHQPAEAKSLLLQHIQRTPQLHRQHPNVRQAHQQFAMQNQSGASPQNTSNSQCRPQ 144
           VYPQYHQPAEAKSLLLQHIQRTPQLHRQHPNVRQAHQQFAMQNQSGASPQNTSNSQCRPQ
Sbjct: 61  VYPQYHQPAEAKSLLLQHIQRTPQLHRQHPNVRQAHQQFAMQNQSGASPQNTSNSQCRPQ 120

Query: 145 GFPRQDTGIHLSSEMFTQHPNFVNLTTQVKKEVDSEGFMASKSSEQRKQHSMSGASA 201
           GFPRQDTGIHLSSEMFTQHPNFVNLTTQVKKEVDSEGFMASKSSEQRKQHSMSGASA
Sbjct: 121 GFPRQDTGIHLSSEMFTQHPNFVNLTTQVKKEVDSEGFMASKSSEQRKQHSMSGASA 177

[Close]

BLAST of Cucsat.G13206.T6 vs. ExPASy TrEMBL
Match: A0A1S4DUH4 (uncharacterized protein LOC103486878 OS=Cucumis melo OX=3656 GN=LOC103486878 PE=4 SV=1)

HSP 1 Score: 240 bits (613), Expect = 1.88e-71
Identity = 135/196 (68.88%), Postives = 151/196 (77.04%), Query Frame = 0


Query: 1   MATPT-DWRTEITQETRQQIVRSIYMMLKEQPS-ELNVKLISDRARKHEMNLFSTAKSKE 60
           MAT T DWRTEIT+ETRQ+   SI+M+L+ Q S + N+ +ISD ARKHEM LFS A S +
Sbjct: 7   MATATTDWRTEITKETRQKKFHSIWMVLERQFSGQFNMNVISDHARKHEMKLFSQANSTD 66

Query: 61  EYLSTGTGKMIKRENHQGSSSGQAVVVYPQYHQPAEAKSLLLQHIQRTPQLHRQHPNVRQ 120
           EYL+ G GK+ KRENH+GSSS +A VVYPQYHQP             TPQL RQHP VRQ
Sbjct: 67  EYLNAGIGKLSKRENHRGSSSSRAAVVYPQYHQP-------------TPQLRRQHPKVRQ 126

Query: 121 AHQQFAMQNQSGASPQNTSNSQCRPQGFPRQDTGIHLSSEMFTQHPNFVNLTTQVKKEVD 180
           AHQQFAMQNQS AS QNTSNSQ RPQGF RQD GIHLSSEMFTQHPNFVNLTTQV+KE +
Sbjct: 127 AHQQFAMQNQSCASLQNTSNSQSRPQGFQRQDIGIHLSSEMFTQHPNFVNLTTQVEKEAN 186

Query: 181 SEGFMASKSSEQRKQH 194
           SEGF ASKS  Q +QH
Sbjct: 187 SEGFKASKSLHQHEQH 189

[Close]

BLAST of Cucsat.G13206.T6 vs. ExPASy TrEMBL
Match: A0A5A7UH89 (Putative tartrate dehydrogenase/decarboxylase ttuC OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G006580 PE=4 SV=1)

HSP 1 Score: 240 bits (613), Expect = 1.88e-71
Identity = 135/196 (68.88%), Postives = 151/196 (77.04%), Query Frame = 0


Query: 1   MATPT-DWRTEITQETRQQIVRSIYMMLKEQPS-ELNVKLISDRARKHEMNLFSTAKSKE 60
           MAT T DWRTEIT+ETRQ+   SI+M+L+ Q S + N+ +ISD ARKHEM LFS A S +
Sbjct: 7   MATATTDWRTEITKETRQKKFHSIWMVLERQFSGQFNMNVISDHARKHEMKLFSQANSTD 66

Query: 61  EYLSTGTGKMIKRENHQGSSSGQAVVVYPQYHQPAEAKSLLLQHIQRTPQLHRQHPNVRQ 120
           EYL+ G GK+ KRENH+GSSS +A VVYPQYHQP             TPQL RQHP VRQ
Sbjct: 67  EYLNAGIGKLSKRENHRGSSSSRAAVVYPQYHQP-------------TPQLRRQHPKVRQ 126

Query: 121 AHQQFAMQNQSGASPQNTSNSQCRPQGFPRQDTGIHLSSEMFTQHPNFVNLTTQVKKEVD 180
           AHQQFAMQNQS AS QNTSNSQ RPQGF RQD GIHLSSEMFTQHPNFVNLTTQV+KE +
Sbjct: 127 AHQQFAMQNQSCASLQNTSNSQSRPQGFQRQDIGIHLSSEMFTQHPNFVNLTTQVEKEAN 186

Query: 181 SEGFMASKSSEQRKQH 194
           SEGF ASKS  Q +QH
Sbjct: 187 SEGFKASKSLHQHEQH 189

[Close]

BLAST of Cucsat.G13206.T6 vs. ExPASy TrEMBL
Match: E5GBP1 (KIX_2 domain-containing protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)

HSP 1 Score: 240 bits (613), Expect = 1.88e-71
Identity = 135/196 (68.88%), Postives = 151/196 (77.04%), Query Frame = 0


Query: 1   MATPT-DWRTEITQETRQQIVRSIYMMLKEQPS-ELNVKLISDRARKHEMNLFSTAKSKE 60
           MAT T DWRTEIT+ETRQ+   SI+M+L+ Q S + N+ +ISD ARKHEM LFS A S +
Sbjct: 7   MATATTDWRTEITKETRQKKFHSIWMVLERQFSGQFNMNVISDHARKHEMKLFSQANSTD 66

Query: 61  EYLSTGTGKMIKRENHQGSSSGQAVVVYPQYHQPAEAKSLLLQHIQRTPQLHRQHPNVRQ 120
           EYL+ G GK+ KRENH+GSSS +A VVYPQYHQP             TPQL RQHP VRQ
Sbjct: 67  EYLNAGIGKLSKRENHRGSSSSRAAVVYPQYHQP-------------TPQLRRQHPKVRQ 126

Query: 121 AHQQFAMQNQSGASPQNTSNSQCRPQGFPRQDTGIHLSSEMFTQHPNFVNLTTQVKKEVD 180
           AHQQFAMQNQS AS QNTSNSQ RPQGF RQD GIHLSSEMFTQHPNFVNLTTQV+KE +
Sbjct: 127 AHQQFAMQNQSCASLQNTSNSQSRPQGFQRQDIGIHLSSEMFTQHPNFVNLTTQVEKEAN 186

Query: 181 SEGFMASKSSEQRKQH 194
           SEGF ASKS  Q +QH
Sbjct: 187 SEGFKASKSLHQHEQH 189

[Close]

BLAST of Cucsat.G13206.T6 vs. ExPASy TrEMBL
Match: A0A6J1J6S4 (uncharacterized protein LOC111482271 OS=Cucurbita maxima OX=3661 GN=LOC111482271 PE=4 SV=1)

HSP 1 Score: 100 bits (249), Expect = 7.52e-21
Identity = 88/215 (40.93%), Postives = 104/215 (48.37%), Query Frame = 0


Query: 31  PSELNVKLISDRARKHEMNLFSTAKSK-------EEYLSTGTGKMIKRENHQGSSSG--- 90
           P+  + + I++ A ++E  LF  AKS+       E YL+  TGKM + EN   S+S    
Sbjct: 11  PNGTSSERIANLAIEYEKRLFKNAKSEQSAYASQEAYLNAVTGKMSRSENRHESASSRVR 70

Query: 91  ----------------QAVVVYPQYHQPAEAKSLLLQHIQRTP-----QLHRQHPNVRQA 150
                           Q  V  P Y QPA   SLL QH Q+       QL RQ  NVRQ 
Sbjct: 71  PAFVIQPPPQMSNQPHQRAVPNPLYQQPAVPNSLLQQHTQQLRPKPHGQLQRQKLNVRQT 130

Query: 151 HQQFAMQNQSGASPQNTSNSQCRPQGFPRQDTGIHLSSEMFTQHPNFVNL------TTQV 201
           HQQ  M NQS  SPQN  NS C PQG         L S +FTQ+PN +NL      TTQV
Sbjct: 131 HQQIGMHNQSFVSPQNALNSPCGPQG---------LVSSIFTQNPNVLNLQPNENLTTQV 190

The following BLAST results are available for this feature:

BLAST of Cucsat.G13206.T6 vs.


Match Name	E-value	Identity	Description

BLAST of Cucsat.G13206.T6 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011652173.1	6.14e-128	100.00	uncharacterized protein LOC105434992 [Cucumis sativus] >KAE8651172.1 hypothetica...	[more]
XP_008443239.1	3.87e-71	68.88	PREDICTED: uncharacterized protein LOC103486878 [Cucumis melo] >XP_008443241.1 P...	[more]
XP_038903080.1	2.69e-59	61.01	probable mediator of RNA polymerase II transcription subunit 15c isoform X1 [Ben...	[more]
XP_038903081.1	8.40e-50	60.00	mediator of RNA polymerase II transcription subunit 15a-like isoform X2 [Beninca...	[more]
XP_023528462.1	2.44e-30	42.15	mediator of RNA polymerase II transcription subunit 15a-like isoform X1 [Cucurbi...	[more]

BLAST of Cucsat.G13206.T6 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LCA9	3.62e-117	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G819850 PE=4 SV=1	[more]
A0A1S4DUH4	1.88e-71	68.88	uncharacterized protein LOC103486878 OS=Cucumis melo OX=3656 GN=LOC103486878 PE=...	[more]
A0A5A7UH89	1.88e-71	68.88	Putative tartrate dehydrogenase/decarboxylase ttuC OS=Cucumis melo var. makuwa O...	[more]
E5GBP1	1.88e-71	68.88	KIX_2 domain-containing protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1	[more]
A0A6J1J6S4	7.52e-21	40.93	uncharacterized protein LOC111482271 OS=Cucurbita maxima OX=3661 GN=LOC111482271...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (B10) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036546	Mediator complex subunit 15, KIX domain	PFAM	PF16987	KIX_2	coord: 5..80 e-value: 7.3E-10 score: 38.7
IPR036529	Coactivator CBP, KIX domain superfamily	GENE3D	1.10.246.20	Coactivator CBP, KIX domain	coord: 3..79 e-value: 2.1E-9 score: 39.3
IPR036529	Coactivator CBP, KIX domain superfamily	SUPERFAMILY	47040	Kix domain of CBP (creb binding protein)	coord: 5..70
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 180..205
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 124..151

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cucsat.G13206	Cucsat.G13206	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cucsat.G13206.T6.E1	Cucsat.G13206.T6.E1	exon
Cucsat.G13206.T6.E2	Cucsat.G13206.T6.E2	exon
Cucsat.G13206.T6.E3	Cucsat.G13206.T6.E3	exon
Cucsat.G13206.T6.E4	Cucsat.G13206.T6.E4	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cucsat.G13206.T6.C1	Cucsat.G13206.T6.C1	CDS
Cucsat.G13206.T6.C2	Cucsat.G13206.T6.C2	CDS
Cucsat.G13206.T6.C3	Cucsat.G13206.T6.C3	CDS
Cucsat.G13206.T6.C4	Cucsat.G13206.T6.C4	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cucsat.G13206.T6	Cucsat.G13206.T6-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
biological_process	GO:0045893	positive regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003712	transcription coregulator activity
molecular_function	GO:0031490	chromatin DNA binding
molecular_function	GO:0003713	transcription coactivator activity