Cucsat.G13100.T2 (mRNA) Cucumber (B10) v3

Overview
NameCucsat.G13100.T2
TypemRNA
OrganismCucumis sativus L. var. sativus cv B10 (Cucumber (B10) v3)
Descriptionheme-binding-like protein At3g10130, chloroplastic
Locationctg1838: 181047 .. 182496 (+)
RNA-Seq ExpressionCucsat.G13100.T2
SyntenyCucsat.G13100.T2
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
CGTAAAATTTTTCAGCCCATTTTTAGTAGTTTTGGCTACGCCATGAAAATGGATTCCCGGGAAAATCTACTCATCGTCACCGAGGCATCACAAATTTCACCCTCTGCAACAGAAATTTGAAAACGCTGAAGAAAAATGCTCTCCGGCAATCCTTTCGTCCTCTCCAAAACCTCGTTTGGATCTCTATGTTCTTTTCCTTCGATAACTCGTCGCAGATCGTCTTCAACCTCCGTCGTCGCTGATTCTACGGTCAGGAATAGCACTGATGTAGCTACTTCACAGTCGCGAAGGACCATTTCCGCTCAGGAAGCTCGAATTTCTCTTGTTTTTGCACTCGCTTCACAAGCATCTACTCTCTCTCAGCGCGGTAATGTCTCAGTATTTGATTTAATGATTGATAGTACTAGAAGTTATAGTTCTCGTTTAATTCGCTCTTTTCGGTTGGTCTGCAGTTTTGTTGGAATTGGCTTCTGAAACTTCGAAATACTTGTTGCCTAAAAGGTTCGACAGTCGGAATTTAGAGGAGGCTCTAATGGCAGGTATTTCTACGTAGAGAACTGTGTTTGTTGGTTGTGAAATTCACACTTGCGACATTCGTCCTGCGATTGAACTCCATTGCAATCCAGCTCGTATTTCTATCTCTTAATTGTTATGAGTCTAATAATTTGTTTTGAGTTAATCTAGTTCCTGATCTCGAGACTCTGAAGTTCAAGGTCTTAAGTCGAAGAGACGAATATGAGATTAGGGAGGTTGAGGTATAATTTCCTCTCTCCTCAATTTACTCTTGTACTGCCTCATTGCTTCAAACCTAAATATAATATTGACTTATTCTAACAATTAGCTTACAAACTATGACTGCGATCGTTGGACAGCCTTACTTTATAGCGGAAACTACCATGCCTGGGAAGAGTGGATTTGATTTCGGTGGTGCCTCTCAATCCTTCAATGTCTTGGCCGCGTACCTCTTTGGTAAGGTAGATCTGAAGCTCCGAGATGAAGCTTGTTAATCTTGATTTCTGTTTGCCATCCTAATCTGAATCCGGTCCTAATACCAGAATAAGGCAAGAGAGAAAATGGAAATGACAACACCTGTTTTGACGAGTCAATACAAATCCGATGGGGAAAAGATGGATACGACAACCCCTGTAATAACTAAAAATGTAAGTTCTTCACATCTTGACACCTGTTAGGCCTCCTCTTTACATCCTTGTTCTCAAATGTGATATTTATTGGTTTTCCATTTCGATGTAATTTTTCTCTTCCATTTTTGTTTTTTTAGGTCGATGGTAAAGATCAGTGGAAGATGTCATTTGTGATACCCTCCAAATACGGTCAGAATTTTCCAGTTCCCCAAGACACATCTGTTAGGATTCAAGAAGTCCCCAGGAAAATTCTTGCGGTTGTAGCCTTTTCAGGTCTGTTTCATTTTAACCTAGAAACTCCATTTACT

Coding sequence (CDS)

ATGCTCTCCGGCAATCCTTTCGTCCTCTCCAAAACCTCGTTTGGATCTCTATGTTCTTTTCCTTCGATAACTCGTCGCAGATCGTCTTCAACCTCCGTCGTCGCTGATTCTACGGTCAGGAATAGCACTGATGTAGCTACTTCACAGTCGCGAAGGACCATTTCCGCTCAGGAAGCTCGAATTTCTCTTGTTTTTGCACTCGCTTCACAAGCATCTACTCTCTCTCAGCGCGTTTTGTTGGAATTGGCTTCTGAAACTTCGAAATACTTGTTGCCTAAAAGGTTCGACAGTCGGAATTTAGAGGAGGCTCTAATGGCAGTTCCTGATCTCGAGACTCTGAAGTTCAAGGTCTTAAGTCGAAGAGACGAATATGAGATTAGGGAGGTTGAGCCTTACTTTATAGCGGAAACTACCATGCCTGGGAAGAGTGGATTTGATTTCGGTGGTGCCTCTCAATCCTTCAATGTCTTGGCCGCGTACCTCTTTGAATAA

Protein sequence

MLSGNPFVLSKTSFGSLCSFPSITRRRSSSTSVVADSTVRNSTDVATSQSRRTISAQEARISLVFALASQASTLSQRVLLELASETSKYLLPKRFDSRNLEEALMAVPDLETLKFKVLSRRDEYEIREVEPYFIAETTMPGKSGFDFGGASQSFNVLAAYLFE
Homology
[Close]
BLAST of Cucsat.G13100.T2 vs. ExPASy Swiss-Prot
Match: Q9SR77 (Heme-binding-like protein At3g10130, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At3g10130 PE=1 SV=1)

HSP 1 Score: 149.8 bits (377), Expect = 2.6e-35
Identity = 77/110 (70.00%), Postives = 95/110 (86.36%), Query Frame = 0 

Query: 54  ISAQEARISLVFALASQASTLSQRVLLELASETSKYLLPKRFD-SRNLEEALMAVPDLET 113
           +SA E+R+SLV ALASQAS++SQR+L +LA ET+KY+ PKRFD S NLEEA M+VPDLET
Sbjct: 57  VSATESRVSLVLALASQASSVSQRLLADLAMETAKYVFPKRFDSSTNLEEAFMSVPDLET 116

Query: 114 LKFKVLSRRDEYEIREVEPYFIAETTMPGKSGFDFGGASQSFNVLAAYLF 163
           + F+VL R D+YEIR+VEPYF+AET MPG++GFD  GAS+SFNVLA YLF
Sbjct: 117 MNFRVLFRTDKYEIRQVEPYFVAETIMPGETGFDSYGASKSFNVLAEYLF 166

[Close]
BLAST of Cucsat.G13100.T2 vs. NCBI nr
Match: XP_004149204.1 (heme-binding-like protein At3g10130, chloroplastic [Cucumis sativus] >KGN59135.1 hypothetical protein Csa_002265 [Cucumis sativus])

HSP 1 Score: 295 bits (754), Expect = 5.83e-98
Identity = 162/162 (100.00%), Postives = 162/162 (100.00%), Query Frame = 0 

Query: 1   MLSGNPFVLSKTSFGSLCSFPSITRRRSSSTSVVADSTVRNSTDVATSQSRRTISAQEAR 60
           MLSGNPFVLSKTSFGSLCSFPSITRRRSSSTSVVADSTVRNSTDVATSQSRRTISAQEAR
Sbjct: 1   MLSGNPFVLSKTSFGSLCSFPSITRRRSSSTSVVADSTVRNSTDVATSQSRRTISAQEAR 60

Query: 61  ISLVFALASQASTLSQRVLLELASETSKYLLPKRFDSRNLEEALMAVPDLETLKFKVLSR 120
           ISLVFALASQASTLSQRVLLELASETSKYLLPKRFDSRNLEEALMAVPDLETLKFKVLSR
Sbjct: 61  ISLVFALASQASTLSQRVLLELASETSKYLLPKRFDSRNLEEALMAVPDLETLKFKVLSR 120

Query: 121 RDEYEIREVEPYFIAETTMPGKSGFDFGGASQSFNVLAAYLF 162
           RDEYEIREVEPYFIAETTMPGKSGFDFGGASQSFNVLAAYLF
Sbjct: 121 RDEYEIREVEPYFIAETTMPGKSGFDFGGASQSFNVLAAYLF 162

[Close]
BLAST of Cucsat.G13100.T2 vs. NCBI nr
Match: XP_016899615.1 (PREDICTED: heme-binding-like protein At3g10130, chloroplastic [Cucumis melo] >KAA0043880.1 heme-binding-like protein [Cucumis melo var. makuwa] >TYK25257.1 heme-binding-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 275 bits (702), Expect = 4.61e-90
Identity = 152/162 (93.83%), Postives = 155/162 (95.68%), Query Frame = 0 

Query: 1   MLSGNPFVLSKTSFGSLCSFPSITRRRSSSTSVVADSTVRNSTDVATSQSRRTISAQEAR 60
           MLSGNPFVLSKTSFGS+CS PSI  RRSSSTSVVADST RNST VATSQS RTISAQEAR
Sbjct: 1   MLSGNPFVLSKTSFGSVCSLPSIISRRSSSTSVVADSTARNSTAVATSQSGRTISAQEAR 60

Query: 61  ISLVFALASQASTLSQRVLLELASETSKYLLPKRFDSRNLEEALMAVPDLETLKFKVLSR 120
           +SLVFALASQASTLSQRVLLELASETSKYLLPKRF+SR LEEALMAVPDLETLKFKVLSR
Sbjct: 61  LSLVFALASQASTLSQRVLLELASETSKYLLPKRFESRTLEEALMAVPDLETLKFKVLSR 120

Query: 121 RDEYEIREVEPYFIAETTMPGKSGFDFGGASQSFNVLAAYLF 162
           RDEYEIREVEPYFIAETTMPGKSGFDFGGASQSFNVLAAYLF
Sbjct: 121 RDEYEIREVEPYFIAETTMPGKSGFDFGGASQSFNVLAAYLF 162

[Close]
BLAST of Cucsat.G13100.T2 vs. NCBI nr
Match: XP_038904637.1 (heme-binding-like protein At3g10130, chloroplastic [Benincasa hispida])

HSP 1 Score: 249 bits (635), Expect = 6.75e-80
Identity = 138/162 (85.19%), Postives = 148/162 (91.36%), Query Frame = 0 

Query: 1   MLSGNPFVLSKTSFGSLCSFPSITRRRSSSTSVVADSTVRNSTDVATSQSRRTISAQEAR 60
           ML  NP VLS+TSFGSLC  PSI RRRSSS+S+VADST R+S+ VATSQSRR+ISAQEAR
Sbjct: 1   MLHCNPSVLSRTSFGSLCPHPSIIRRRSSSSSIVADSTARDSSAVATSQSRRSISAQEAR 60

Query: 61  ISLVFALASQASTLSQRVLLELASETSKYLLPKRFDSRNLEEALMAVPDLETLKFKVLSR 120
           +SL FALASQAS LSQRVLLELASETSKYLLPKRF+SRNLEEALMAVPDLET KFKVLSR
Sbjct: 61  LSLAFALASQASALSQRVLLELASETSKYLLPKRFESRNLEEALMAVPDLETPKFKVLSR 120

Query: 121 RDEYEIREVEPYFIAETTMPGKSGFDFGGASQSFNVLAAYLF 162
           RDEYEIREVE YFIAETTMPGKSGFDF GAS+SFN+LA YLF
Sbjct: 121 RDEYEIREVESYFIAETTMPGKSGFDFSGASRSFNILAEYLF 162

[Close]
BLAST of Cucsat.G13100.T2 vs. NCBI nr
Match: XP_022144616.1 (heme-binding-like protein At3g10130, chloroplastic [Momordica charantia])

HSP 1 Score: 234 bits (597), Expect = 3.87e-74
Identity = 134/162 (82.72%), Postives = 141/162 (87.04%), Query Frame = 0 

Query: 1   MLSGNPFVLSKTSFGSLCSFPSITRRRSSSTSVVADSTVRNSTDVATSQSRRTISAQEAR 60
           ML  NP VLSKTSFGS    PS    R S +SVVADSTVRNS  VATS SR TISAQEAR
Sbjct: 1   MLHCNPLVLSKTSFGSSTPPPSRIIHRLSLSSVVADSTVRNSATVATSPSRTTISAQEAR 60

Query: 61  ISLVFALASQASTLSQRVLLELASETSKYLLPKRFDSRNLEEALMAVPDLETLKFKVLSR 120
           +SLVFALASQAS+LSQRVL ELA+ET KYLLPKRF+SRNLEEALMAVPDLET++FKVLSR
Sbjct: 61  VSLVFALASQASSLSQRVLSELATETLKYLLPKRFESRNLEEALMAVPDLETMEFKVLSR 120

Query: 121 RDEYEIREVEPYFIAETTMPGKSGFDFGGASQSFNVLAAYLF 162
           RDEYEIREVEPYFIAETTMPGKSGFDF GASQSFNVLA YLF
Sbjct: 121 RDEYEIREVEPYFIAETTMPGKSGFDFSGASQSFNVLAGYLF 162

[Close]
BLAST of Cucsat.G13100.T2 vs. NCBI nr
Match: XP_023005922.1 (heme-binding-like protein At3g10130, chloroplastic [Cucurbita maxima])

HSP 1 Score: 229 bits (584), Expect = 3.29e-72
Identity = 132/162 (81.48%), Postives = 142/162 (87.65%), Query Frame = 0 

Query: 1   MLSGNPFVLSKTSFGSLCSFPSITRRRSSSTSVVADSTVRNSTDVATSQSRRTISAQEAR 60
           ML  N FVLS   FGSL    S  R RSSS+ + ADSTV++ST VA+SQSRRTIS+QEAR
Sbjct: 1   MLHCNHFVLS---FGSLSPQSSRIRHRSSSSFIFADSTVKDSTAVASSQSRRTISSQEAR 60

Query: 61  ISLVFALASQASTLSQRVLLELASETSKYLLPKRFDSRNLEEALMAVPDLETLKFKVLSR 120
           +SLVFALASQ  +LSQRVLLELASETSKYLLPKRF+SRNLEEALMAVPDLET+KFKVLSR
Sbjct: 61  VSLVFALASQTYSLSQRVLLELASETSKYLLPKRFESRNLEEALMAVPDLETMKFKVLSR 120

Query: 121 RDEYEIREVEPYFIAETTMPGKSGFDFGGASQSFNVLAAYLF 162
           RDEYEIREVEPYFIAETTMPGKSGFDF GASQSFNVLA YLF
Sbjct: 121 RDEYEIREVEPYFIAETTMPGKSGFDFNGASQSFNVLAGYLF 159

[Close]
BLAST of Cucsat.G13100.T2 vs. ExPASy TrEMBL
Match: A0A0A0LAW9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G776950 PE=3 SV=1)

HSP 1 Score: 295 bits (754), Expect = 2.82e-98
Identity = 162/162 (100.00%), Postives = 162/162 (100.00%), Query Frame = 0 

Query: 1   MLSGNPFVLSKTSFGSLCSFPSITRRRSSSTSVVADSTVRNSTDVATSQSRRTISAQEAR 60
           MLSGNPFVLSKTSFGSLCSFPSITRRRSSSTSVVADSTVRNSTDVATSQSRRTISAQEAR
Sbjct: 1   MLSGNPFVLSKTSFGSLCSFPSITRRRSSSTSVVADSTVRNSTDVATSQSRRTISAQEAR 60

Query: 61  ISLVFALASQASTLSQRVLLELASETSKYLLPKRFDSRNLEEALMAVPDLETLKFKVLSR 120
           ISLVFALASQASTLSQRVLLELASETSKYLLPKRFDSRNLEEALMAVPDLETLKFKVLSR
Sbjct: 61  ISLVFALASQASTLSQRVLLELASETSKYLLPKRFDSRNLEEALMAVPDLETLKFKVLSR 120

Query: 121 RDEYEIREVEPYFIAETTMPGKSGFDFGGASQSFNVLAAYLF 162
           RDEYEIREVEPYFIAETTMPGKSGFDFGGASQSFNVLAAYLF
Sbjct: 121 RDEYEIREVEPYFIAETTMPGKSGFDFGGASQSFNVLAAYLF 162

[Close]
BLAST of Cucsat.G13100.T2 vs. ExPASy TrEMBL
Match: A0A5A7TKZ9 (Heme-binding-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G003900 PE=3 SV=1)

HSP 1 Score: 275 bits (702), Expect = 2.23e-90
Identity = 152/162 (93.83%), Postives = 155/162 (95.68%), Query Frame = 0 

Query: 1   MLSGNPFVLSKTSFGSLCSFPSITRRRSSSTSVVADSTVRNSTDVATSQSRRTISAQEAR 60
           MLSGNPFVLSKTSFGS+CS PSI  RRSSSTSVVADST RNST VATSQS RTISAQEAR
Sbjct: 1   MLSGNPFVLSKTSFGSVCSLPSIISRRSSSTSVVADSTARNSTAVATSQSGRTISAQEAR 60

Query: 61  ISLVFALASQASTLSQRVLLELASETSKYLLPKRFDSRNLEEALMAVPDLETLKFKVLSR 120
           +SLVFALASQASTLSQRVLLELASETSKYLLPKRF+SR LEEALMAVPDLETLKFKVLSR
Sbjct: 61  LSLVFALASQASTLSQRVLLELASETSKYLLPKRFESRTLEEALMAVPDLETLKFKVLSR 120

Query: 121 RDEYEIREVEPYFIAETTMPGKSGFDFGGASQSFNVLAAYLF 162
           RDEYEIREVEPYFIAETTMPGKSGFDFGGASQSFNVLAAYLF
Sbjct: 121 RDEYEIREVEPYFIAETTMPGKSGFDFGGASQSFNVLAAYLF 162

[Close]
BLAST of Cucsat.G13100.T2 vs. ExPASy TrEMBL
Match: A0A1S4DV81 (heme-binding-like protein At3g10130, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103486613 PE=3 SV=1)

HSP 1 Score: 275 bits (702), Expect = 2.23e-90
Identity = 152/162 (93.83%), Postives = 155/162 (95.68%), Query Frame = 0 

Query: 1   MLSGNPFVLSKTSFGSLCSFPSITRRRSSSTSVVADSTVRNSTDVATSQSRRTISAQEAR 60
           MLSGNPFVLSKTSFGS+CS PSI  RRSSSTSVVADST RNST VATSQS RTISAQEAR
Sbjct: 1   MLSGNPFVLSKTSFGSVCSLPSIISRRSSSTSVVADSTARNSTAVATSQSGRTISAQEAR 60

Query: 61  ISLVFALASQASTLSQRVLLELASETSKYLLPKRFDSRNLEEALMAVPDLETLKFKVLSR 120
           +SLVFALASQASTLSQRVLLELASETSKYLLPKRF+SR LEEALMAVPDLETLKFKVLSR
Sbjct: 61  LSLVFALASQASTLSQRVLLELASETSKYLLPKRFESRTLEEALMAVPDLETLKFKVLSR 120

Query: 121 RDEYEIREVEPYFIAETTMPGKSGFDFGGASQSFNVLAAYLF 162
           RDEYEIREVEPYFIAETTMPGKSGFDFGGASQSFNVLAAYLF
Sbjct: 121 RDEYEIREVEPYFIAETTMPGKSGFDFGGASQSFNVLAAYLF 162

[Close]
BLAST of Cucsat.G13100.T2 vs. ExPASy TrEMBL
Match: A0A6J1CTY1 (heme-binding-like protein At3g10130, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111014259 PE=3 SV=1)

HSP 1 Score: 234 bits (597), Expect = 1.87e-74
Identity = 134/162 (82.72%), Postives = 141/162 (87.04%), Query Frame = 0 

Query: 1   MLSGNPFVLSKTSFGSLCSFPSITRRRSSSTSVVADSTVRNSTDVATSQSRRTISAQEAR 60
           ML  NP VLSKTSFGS    PS    R S +SVVADSTVRNS  VATS SR TISAQEAR
Sbjct: 1   MLHCNPLVLSKTSFGSSTPPPSRIIHRLSLSSVVADSTVRNSATVATSPSRTTISAQEAR 60

Query: 61  ISLVFALASQASTLSQRVLLELASETSKYLLPKRFDSRNLEEALMAVPDLETLKFKVLSR 120
           +SLVFALASQAS+LSQRVL ELA+ET KYLLPKRF+SRNLEEALMAVPDLET++FKVLSR
Sbjct: 61  VSLVFALASQASSLSQRVLSELATETLKYLLPKRFESRNLEEALMAVPDLETMEFKVLSR 120

Query: 121 RDEYEIREVEPYFIAETTMPGKSGFDFGGASQSFNVLAAYLF 162
           RDEYEIREVEPYFIAETTMPGKSGFDF GASQSFNVLA YLF
Sbjct: 121 RDEYEIREVEPYFIAETTMPGKSGFDFSGASQSFNVLAGYLF 162

[Close]
BLAST of Cucsat.G13100.T2 vs. ExPASy TrEMBL
Match: A0A6J1KUH7 (heme-binding-like protein At3g10130, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111498783 PE=3 SV=1)

HSP 1 Score: 229 bits (584), Expect = 1.59e-72
Identity = 132/162 (81.48%), Postives = 142/162 (87.65%), Query Frame = 0 

Query: 1   MLSGNPFVLSKTSFGSLCSFPSITRRRSSSTSVVADSTVRNSTDVATSQSRRTISAQEAR 60
           ML  N FVLS   FGSL    S  R RSSS+ + ADSTV++ST VA+SQSRRTIS+QEAR
Sbjct: 1   MLHCNHFVLS---FGSLSPQSSRIRHRSSSSFIFADSTVKDSTAVASSQSRRTISSQEAR 60

Query: 61  ISLVFALASQASTLSQRVLLELASETSKYLLPKRFDSRNLEEALMAVPDLETLKFKVLSR 120
           +SLVFALASQ  +LSQRVLLELASETSKYLLPKRF+SRNLEEALMAVPDLET+KFKVLSR
Sbjct: 61  VSLVFALASQTYSLSQRVLLELASETSKYLLPKRFESRNLEEALMAVPDLETMKFKVLSR 120

Query: 121 RDEYEIREVEPYFIAETTMPGKSGFDFGGASQSFNVLAAYLF 162
           RDEYEIREVEPYFIAETTMPGKSGFDF GASQSFNVLA YLF
Sbjct: 121 RDEYEIREVEPYFIAETTMPGKSGFDFNGASQSFNVLAGYLF 159

The following BLAST results are available for this feature:
BLAST of Cucsat.G13100.T2 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9SR772.6e-3570.00Heme-binding-like protein At3g10130, chloroplastic OS=Arabidopsis thaliana OX=37... [more]
BLAST of Cucsat.G13100.T2 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_004149204.15.83e-98100.00heme-binding-like protein At3g10130, chloroplastic [Cucumis sativus] >KGN59135.1... [more]
XP_016899615.14.61e-9093.83PREDICTED: heme-binding-like protein At3g10130, chloroplastic [Cucumis melo] >KA... [more]
XP_038904637.16.75e-8085.19heme-binding-like protein At3g10130, chloroplastic [Benincasa hispida][more]
XP_022144616.13.87e-7482.72heme-binding-like protein At3g10130, chloroplastic [Momordica charantia][more]
XP_023005922.13.29e-7281.48heme-binding-like protein At3g10130, chloroplastic [Cucurbita maxima][more]
BLAST of Cucsat.G13100.T2 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LAW92.82e-98100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G776950 PE=3 SV=1[more]
A0A5A7TKZ92.23e-9093.83Heme-binding-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo... [more]
A0A1S4DV812.23e-9093.83heme-binding-like protein At3g10130, chloroplastic OS=Cucumis melo OX=3656 GN=LO... [more]
A0A6J1CTY11.87e-7482.72heme-binding-like protein At3g10130, chloroplastic OS=Momordica charantia OX=367... [more]
A0A6J1KUH71.59e-7281.48heme-binding-like protein At3g10130, chloroplastic OS=Cucurbita maxima OX=3661 G... [more]
InterPro
Analysis Name: InterPro Annotations of Cucumber (B10) v3
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006917SOUL haem-binding proteinPFAMPF04832SOULcoord: 110..162
e-value: 1.1E-7
score: 32.2
IPR006917SOUL haem-binding proteinPANTHERPTHR11220HEME-BINDING PROTEIN-RELATEDcoord: 24..162
IPR011256Regulatory factor, effector binding domain superfamilyGENE3D3.20.80.10Regulatory factor, effector binding domaincoord: 109..163
e-value: 1.3E-6
score: 30.1
IPR011256Regulatory factor, effector binding domain superfamilySUPERFAMILY55136Probable bacterial effector-binding domaincoord: 105..162
NoneNo IPR availablePANTHERPTHR11220:SF54OS02G0533200 PROTEINcoord: 24..162

Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Cucsat.G13100Cucsat.G13100gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Cucsat.G13100.T2.E1Cucsat.G13100.T2.E1exon
Cucsat.G13100.T2.E2Cucsat.G13100.T2.E2exon
Cucsat.G13100.T2.E3Cucsat.G13100.T2.E3exon
Cucsat.G13100.T2.E4Cucsat.G13100.T2.E4exon
Cucsat.G13100.T2.E5Cucsat.G13100.T2.E5exon
Cucsat.G13100.T2.E6Cucsat.G13100.T2.E6exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Cucsat.G13100.T2.C1Cucsat.G13100.T2.C1CDS
Cucsat.G13100.T2.C2Cucsat.G13100.T2.C2CDS
Cucsat.G13100.T2.C3Cucsat.G13100.T2.C3CDS
Cucsat.G13100.T2.C4Cucsat.G13100.T2.C4CDS
Cucsat.G13100.T2.C5Cucsat.G13100.T2.C5CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Cucsat.G13100.T2Cucsat.G13100.T2-proteinpolypeptide


GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0110165 cellular anatomical entity