Cucsat.G12992.T4 (mRNA) Cucumber (B10) v3

Overview
NameCucsat.G12992.T4
TypemRNA
OrganismCucumis sativus L. var. sativus cv B10 (Cucumber (B10) v3)
DescriptionRhamnogalacturonan endolyase
Locationctg1838: 8613937 .. 8621021 (-)
RNA-Seq ExpressionCucsat.G12992.T4
SyntenyCucsat.G12992.T4
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
CGACCGCGCGCCAGTTCCGTGCTGTATTAAGTTCCAACCTTCGCCGTCGAGCAAAGTAATTCGCGAATCCTAATCGAAACAAAGAATGTGAAAATTCATTCTACAGTTTGATAATCGGAATCCGTTCATATTCTCAGTCGATCGTGTTGTTCATGCTATCAATTAGTTTCTCTTCTCTATCAATGTCCGCCATCATAACAAACTGTTCTTATTCTTTGTCCTTTGGATTTCCATTTTCCTTTTGATCTTCTACTTCTGTTTGCTCCACTGACTTTTCTTATAGAAACTTTGAATGTGAAAGTTTTACAATGTCATCCAGAGCCGTCCGCTTGCAGATACGAGATCATCATGTAAGTTAGATTTTCTATTTTGTTCCGACTCTGTAAAGATATTCCAGACGAAAACTATGTAGAATTGAGTACTGAAGAAAATAATATTGTAATTTCTTTAAGAAATTGTTCATATTATTCTTTTTTGATTCGTGTTATGTACAGGTGGTGGTGGATAATGGTATATTGCAACTAACTTTATCAAAACCTGATGGAATTATCACTGGTGTACGATATAATGGTGTTGACAATCTACTTGAAGTTCTTAATCCTGAATCTAATAGAGGGTATACACTCATCGTCTTTAATTTTTGCTATTTTTAATCCATTTCTATTAAAGAAAAACAAGTTTTCGACCTATGTATTTATTTAGTTTAATAGTTTTCGAAATTGGGTTTGGTTTTGGAAACCATAAGTAGAAGATAAATAACAAACACAAAGGAATTCATTGATTAACGTGGTATTATAACCTAAATTTTAAGCAACAAAATAGTTACTAAATGGACTACGAGCGAGTTTATTTATTTATTTTTTAAAATATTCAGGTACTGGGACCTTGTTTGGAATTCTCCAGGAAGCAAGGGAGTATTTGACGTGTATGCCTTTTCCTTCTTCACTTTTTTAATTAGTTATATGTTAGTTTTGGAATGAAAGGCCAAAATGAGCTTAGTTCGGTAGTAATTGGCAAAATGAGCTTAGTTCGGTAGTAATTGGCATGTGTTTCCTCTCTTGAAGTCGGAGCCTTGACCGTCATCTTTCCATTTTCCAAACAGCTGCTCATTTTCTCTTTTTTTTTTTTTTTTTTGCATTGGACTGGTTTTATTTATACTTTATGTTGTCATGTAATTTGAGAATCAATTGGCATGCAGGATTAAAGGGTCAAGGTTTAGGGTTATAGTGGAAAATGAGGAACAGGTTGAGCTTTCTTTTGTGAGAATGTGGGATCCCTCCCTTGAGGGCAAGTTTGTTCCTTTGAATATAGACAAAAGGTTTGCCATCAAATTTCCCATCATTGTACTAATTTTTGTTTAATTATTCACTCAATCACTTAATTGATTTTCTCTTCTAGGTTCATAGTACTACGTGGTTCTTCTGGATTTTACTCTTATGCTATTTATGAGCACTTGAAGGATTGGCCTGATTTCGATATTGGTGAAACCAGGATTACCTTTAAACTTAGAAAAGACAAGTGAGCATACTCTATCTTTACGAGTCATTTATGATTTTATCGACACGCATATAATTGTCTCCCTTTTTGTAATTACATTATCACCATCCTTGTTAATGAGGTGCCTTTTGTAGCCTTTATCCTTCACTATGAAATTCTTTTGTGTCCCATTTCATGATGTCAATGAATGGTTGCTGTTTCCAATCATCGTATCAGAGAATGCCCATTTTTTTCTTTATTTCCTTCCATACTTGCTCTTGAAATGGCCAGTAATTAGAGGACTTGGTTATCCAGTTTCTCAAGTCTCCCATAGCTTTGATATTTTCAATGTCAATAATCAATCCAATGATTGAATTGATAGGTTTCAGTACATGGCTGTAGCTGACAATAGGCAGAGAGTCATGCCCCTGCCTGATGATCGGTTATCTGGAAGATGCCAAACTTTGGCCTATCCTGAAGCTGTCTTGCTTACTAATCCCAAGAACCCTGCTCTCAAGGGTGAGGTACTCTTGGATTACTATTCTCTCTTCTGGGAATGGACTGGGATTGATCTTGAACCAGCATTTTCAATTGCAACACGGTTTTGATAGGATCCACCTTCATTTGATATGATCCTTTTTTGTTCAGGTGGATGACAAATACCAATACTCGTGTGAAAACAACAACTTAAAGGTTCATGGGTGGATAAGCACCAACCCACCCACCGGGTTTTGGCAGATTACTCCCAGTGATGAATTTCGGTCAGGTGGGCCTCTTAAGCAAAGTCTAACATCACACGTGGGACCTACAACCCTTGCTGTAGGTGATCGAACATTGCTGATCATCATTAGTTCTTTCTTTCGTGTATTTCACATCGAGTTATTATATATTCGGGTGATCTTGTGTGACAAGTAGGATTTCTAGCAAGTCTCATCTTTCTTTCTAACTTGCTCTTGTCAGATATTTCTTAGCACTCATTATGCGGGACAAGATTTGGTGCCAAAATTTAGAGCTGGCGAGCCATGGAAGAAAGTTTTTGGCCCTGTTTTTCTCTATCTTAATTCCACCTCAGTTGGAGATGACCCATTTTGGTTATGGGAGGATGCTAAAATACAGGTTTGATGCATTAAGACTCTCAGTGACTCAACTTTTTTCTTTGTGTGGATGACACTTCGACCTAGAAATACTTATAATCATATGACTATCAGATGATGGCAGAAGTCGATAGTTGGCCATATAGTTTCCCTGCATCAGAGGATTTCCCAAAAAAAGATCAACGGGGCATCGTTAGTGGCAGGCTACTGGTTTTTGATAGGTAAGCATTTCTTATTTGTAAATTCTTGGTAAGAACTGATACAATGATGTGGTTTTTTATCAAATTTCATTTGGCCAATATCTTTCATTATATTTTCGTAAAGAGCTTAAAAGAGGATGTATCTGCTATGTGAAAATTTCATGACTCCTTCCAAGTTTCAGCTGCAAGATGTAGTAAAGATGGTAATCACTTATCAATATTAAAAAATCTGTAGCAGATAATCAAACGTAGAAAAACAGGTTTTCTACAGTAACCAAAATTTGTTGCTTTTGATTCATAATTATTATTTTCTATTTTATTTTTATGATTTCTGCAAAAGTAAAAATGAAGGTTCAGAAAATGTTGTTAAGTTAGAAATCTGGAAATTGAATTCAGGGACCCACATTCCTATATTCGTTAGCCTTAAACGGATTTAGAGATGTTTCTTGCACAAAGAAAAAAAAGGAATATACTGACTTTTCTAAAATTTGAAATGAAAATGATAAACAAGAAACAGCATATTATTAATTGGATTCTCTACTTGTCTTATCTTTTAGTTTAATTTATGTGCTTGGACTTTTGTTTTTAAAATATCTAGATATGTGGATCAAGACTATCTTCCAGCCTGTGGAGCCTTCGTCGGATTGTCTGCACCAGGAGAAGCGGGATCATGGCAGAGAGAATGCAAGGTAACTAACTTTGTTTCCAGAGATTGTCTACTATCGTCTGCCTTGTCAGTGTTTTTCTAAAGCTCGAGGTAGTATGAAGCGCAATAGTCTTCCAGAACTTTAAGACAAGGTGAAAAAAAAAGGCGAGTACATATGAAATGCTCTATATATAAAGGCACGACATGAAGAAGAGAAAAAATAGTTGAAGTGGGAATATGAAAAAAAACCGCAAACACGTGGATTGATATATTAATTAGTAAGAAGGAAAAACCAAAGTTATTATTATATTTTCTAAGATAATGAAAAAGCCAGGCGCCAGACTCCGTCTAGCATCTAGGCACACGCTTGATAGGGCTTTTAAAAACATTGACCTTGGCCTAGTGAAGGTCAAACTTGTAGTTCAAAAATTATTTCAGCATACAGAATTTTCATTACTAGGATACCGTACCTGCAACCTATGGTTTATGATGACTTTTTTTTTCTCTCTCTCTCAGAAATTTCTTTGTTGATATTGATATTCATTGTCTTTTAAATTCAAAAGCAAAGCTATCAAATCTGAAGGGATACAATATTATGCACATGTGTTATATTTCTGGAATTTGAACAATTTTCAGAACTTCCAAATCTTTTTCGTACCTATGAAAGCGTGGTAAAGCAGCAGAAGAATAGATAGACATTGTCTTATCGACTTTTATTAAAAATACAACGTTTGGAGAGGACTGAAGGTTTAGTCTCTCGAATGAACTAGAAATGACTTCTGATTTGTACTTGCAGATTGCCCTTCCTTGTAGATATAATTCCCCAACCTTTAAACAAGTTAAATAACTTCACATTTCTTTTCTGCCTTCAGTATAAGTAACGACTTATAGCAACATACTATCCTGCCCTTCTCTCAGAGACCACCATTGACTCTCGAAGATCTAACCCTCTTTAGTGGCACAAATCCTCCTCGTAGAATTATAAAATGAATAGAGTCTCATGTTTCTATCAAGATGGTATCAAAAAAATTAGAGAAGCTATAATGATATGGTGAAAGGATGAGGATAAAACTAATTTTGTTTGATTCTTTCATCAATTTCATCGAAGTCCTTGAAAAGAAATGGAAAATACTGAATACTTGAGCTTTTAGAACTACATTTTAACTCACATGGAAGCCTTCTAGCTTCATTCGATTATGAGAACTTTTCGTTAATAGTATCTGTAAGGTTAAATCATATGTATCCTTTAAAAGAGTTTATTCTTATTGTCAGGGATATCAATTCTGGACTAGAGCAGATGATGGTGGTTATTTTACCATCAACCACGTACACACCGGTGAGTATAATCTATATGCATGGGTTCCTGGCTTCATTGGAGATTATCGCTGTGATGCCCTCATCAATGTAAGCCAAGGTACAGTTCCCTCTTCCCTGTATTGCATAATAAATTGACTGAAGCCTTCAATTTTTAAGTGCACAGTTACAGAATTCCAAGTTGATATGTAGGATCTTGCATTGAAATGGGTGATCTTGTATATGAACCTCCTAGAGATGGGCCTACGCTTTGGGAAATAGGCATTCCCGATCGTTCTGCATCCGAGTTCTATGTTCCTGATCCTAATCCAATACATATTAATAAACTCTTTGTTGACCATCCTGACAGGTACTCCCTTTCTATAGTTCTAACTTCTATTAATTAAATGAACTTTGACATTATGGTCCGTTTTTACAGTCTGTTTCACACTGTTTCCATATAGAAATTTGAGTTCTTATTCTGAGGATGGGAATGTAAAAGTGTCTGTCGATATCCCTTGTTATAGAATGAAGATGACAGTAAGAATCCCAGCTAGGAAAATATTAGGATTATTAGTATGATAAGTAAGAAAGCATCTTCTAGTAATTAAACAATAATGAAATTTCTTATGTTGAGCGTTTTGATGCTTGGGGGAGGATACTTAACCCTTTAGAATGTGTTGAAAAGCGTTGGTTCTTTATTTCTATCACTTGTAATTGTTTTTCTTATCAACATTAATGTCAGTGGATTTTCCTTGAAGTAGCTATATCACATGATGTTTGCATTGTGATTTCTTGGGTATTTGTGTTCTTTATTAGAATTTTCTGTTTGTGGAAGAAGAATCTTAACATTAACAATGACTTATGTAGATCATGAGTGATTCAAATCCAACTAAAGCTGAACTCTCCAATGTTTAACACTTATACTCTGCAGGTTCCGGCAGTACGGGTTGTGGAACAGATACGCTGAATTATACCCGAATGAGGATTTAGTATATACAGTTGGCACAAGCGACTATAGAAAAGATTGGTTCTTTGCTCATGTCCCTAGGTAACATTTCTTTGGCTCTTCATTGTCACGACCAAGAACAACAATGGCGATTGTTGTCGTCAGACCGAACAAACAATTTCTCCTCTTCATCAATGAATATGGTCGTTATCATTATATGGTCATTAACATGTCTTGTATTTGTCATCAAACTATTCCATTTATTGCAGGAAGACAAACAATTCACATGAAGGAACTACTTGGCAAATCAAATTCAAACTTGATAGAGTGGATCACAAGAGTATGTATACACTACGGGTTGCAATTGCTTCTGCTACTCTTGCTGAATTGCAGGTATTATGCTGTACGATTAGCCATAACTGAAATGCTCGACATTTGAATTTAGTCTCTGTACTTTAACGATTGCATCTATATGGTTTTCGAAATTTTAAAGTTACAAATTTATTCCTTGAACTCTCGAATTCTTTGAAAATTCATAGATTTACTCAACAAAATTGAAAATTAGAGCTTACTAACGTAAAATTCAAATTATATCTAATAGAAAAGTTTATTTTTGTATCTTTTGAATTGGTTAGAGTTCTACTAGGCACAAATTAAAAAAATTTTGAGGTTGTTTTGGGAGTGAGCTCCATGTTCGAGACTCCAAAATATAGCAGTGGTGTTTACTATTGCTTGTAGTTTATAATTATATACAACAATGCTATTTGAAACATCTCTTTAATGTTGTGTTTACTACTTTCTACCCAAACTAAAATAGTTTACACCTCAAACAGAGACTATTATAATTTATAGACTATACTAACCAACTTAACGTCCCAAATGCTCCCTTATACATAAAGGGACCTGTTAAAATTTTAAACCACCTTGAAAGTTGTAAAGATGAGATATACGCAAACTTCAAAGTTAAGGACTAAACTTATAATTTAACCTTAATCTATTTTTCCACTTCTCTCTCTGCTCTCACCCTCTAGGTGCGGGTAAATGATCCGAGATCGAAGCGACCTTTGTTTACGAGCGGGTTGATAGGGAGGGACAATTCAATTGCAAGACATGGAATTCATGGAATTTATTGGGTTTATGGTGTGGGCGTAGCTGGGTGTCATCTTGTTGAAGGAGAAAACACAATCTTCTTGACTCAGCCACGCTGCACCAGCCCTTTTCAGGGTATCATGTATGATTATATCCGTCTTGAAGGTCCTCCAACAAAGTGATTAATTCTTTCTTTACCTAACATTTTATATATTGCACTTCTTTTTTCTCAAAAAGTTAAATTTCCTATTTCGTATTATGTTTGTGTATGAATTACTTGTTTTCGAGAGATATTGTTCCTTTTAACTCTTTATGATCTTTTTTCAGAAGTGATTTTT

Coding sequence (CDS)

ATGTCATCCAGAGCCGTCCGCTTGCAGATACGAGATCATCATGTGGTGGTGGATAATGGTATATTGCAACTAACTTTATCAAAACCTGATGGAATTATCACTGGTGTACGATATAATGGTGTTGACAATCTACTTGAAGTTCTTAATCCTGAATCTAATAGAGGGTACTGGGACCTTGTTTGGAATTCTCCAGGAAGCAAGGGAGTATTTGACGTGATTAAAGGGTCAAGGTTTAGGGTTATAGTGGAAAATGAGGAACAGGTTGAGCTTTCTTTTGTGAGAATGTGGGATCCCTCCCTTGAGGGCAAGTTTGTTCCTTTGAATATAGACAAAAGGTTCATAGTACTACGTGGTTCTTCTGGATTTTACTCTTATGCTATTTATGAGCACTTGAAGGATTGGCCTGATTTCGATATTGGTGAAACCAGGATTACCTTTAAACTTAGAAAAGACAAGTTTCAGTACATGGCTGTAGCTGACAATAGGCAGAGAGTCATGCCCCTGCCTGATGATCGGTTATCTGGAAGATGCCAAACTTTGGCCTATCCTGAAGCTGTCTTGCTTACTAATCCCAAGAACCCTGCTCTCAAGGGTGAGGTGGATGACAAATACCAATACTCGTGTGAAAACAACAACTTAAAGGTTCATGGGTGGATAAGCACCAACCCACCCACCGGGTTTTGGCAGATTACTCCCAGTGATGAATTTCGGTCAGGTGGGCCTCTTAAGCAAAGTCTAACATCACACGTGGGACCTACAACCCTTGCTATATTTCTTAGCACTCATTATGCGGGACAAGATTTGGTGCCAAAATTTAGAGCTGGCGAGCCATGGAAGAAAGTTTTTGGCCCTGTTTTTCTCTATCTTAATTCCACCTCAGTTGGAGATGACCCATTTTGGTTATGGGAGGATGCTAAAATACAGATGATGGCAGAAGTCGATAGTTGGCCATATAGTTTCCCTGCATCAGAGGATTTCCCAAAAAAAGATCAACGGGGCATCGTTAGTGGCAGGCTACTGGTTTTTGATAGGTAA

Protein sequence

MSSRAVRLQIRDHHVVVDNGILQLTLSKPDGIITGVRYNGVDNLLEVLNPESNRGYWDLVWNSPGSKGVFDVIKGSRFRVIVENEEQVELSFVRMWDPSLEGKFVPLNIDKRFIVLRGSSGFYSYAIYEHLKDWPDFDIGETRITFKLRKDKFQYMAVADNRQRVMPLPDDRLSGRCQTLAYPEAVLLTNPKNPALKGEVDDKYQYSCENNNLKVHGWISTNPPTGFWQITPSDEFRSGGPLKQSLTSHVGPTTLAIFLSTHYAGQDLVPKFRAGEPWKKVFGPVFLYLNSTSVGDDPFWLWEDAKIQMMAEVDSWPYSFPASEDFPKKDQRGIVSGRLLVFDR
Homology
[Close]
BLAST of Cucsat.G12992.T4 vs. NCBI nr
Match: XP_004136250.1 (probable rhamnogalacturonate lyase B isoform X1 [Cucumis sativus] >KGN60276.1 hypothetical protein Csa_001404 [Cucumis sativus])

HSP 1 Score: 725 bits (1871), Expect = 1.11e-259
Identity = 344/344 (100.00%), Postives = 344/344 (100.00%), Query Frame = 0 

Query: 1   MSSRAVRLQIRDHHVVVDNGILQLTLSKPDGIITGVRYNGVDNLLEVLNPESNRGYWDLV 60
           MSSRAVRLQIRDHHVVVDNGILQLTLSKPDGIITGVRYNGVDNLLEVLNPESNRGYWDLV
Sbjct: 1   MSSRAVRLQIRDHHVVVDNGILQLTLSKPDGIITGVRYNGVDNLLEVLNPESNRGYWDLV 60

Query: 61  WNSPGSKGVFDVIKGSRFRVIVENEEQVELSFVRMWDPSLEGKFVPLNIDKRFIVLRGSS 120
           WNSPGSKGVFDVIKGSRFRVIVENEEQVELSFVRMWDPSLEGKFVPLNIDKRFIVLRGSS
Sbjct: 61  WNSPGSKGVFDVIKGSRFRVIVENEEQVELSFVRMWDPSLEGKFVPLNIDKRFIVLRGSS 120

Query: 121 GFYSYAIYEHLKDWPDFDIGETRITFKLRKDKFQYMAVADNRQRVMPLPDDRLSGRCQTL 180
           GFYSYAIYEHLKDWPDFDIGETRITFKLRKDKFQYMAVADNRQRVMPLPDDRLSGRCQTL
Sbjct: 121 GFYSYAIYEHLKDWPDFDIGETRITFKLRKDKFQYMAVADNRQRVMPLPDDRLSGRCQTL 180

Query: 181 AYPEAVLLTNPKNPALKGEVDDKYQYSCENNNLKVHGWISTNPPTGFWQITPSDEFRSGG 240
           AYPEAVLLTNPKNPALKGEVDDKYQYSCENNNLKVHGWISTNPPTGFWQITPSDEFRSGG
Sbjct: 181 AYPEAVLLTNPKNPALKGEVDDKYQYSCENNNLKVHGWISTNPPTGFWQITPSDEFRSGG 240

Query: 241 PLKQSLTSHVGPTTLAIFLSTHYAGQDLVPKFRAGEPWKKVFGPVFLYLNSTSVGDDPFW 300
           PLKQSLTSHVGPTTLAIFLSTHYAGQDLVPKFRAGEPWKKVFGPVFLYLNSTSVGDDPFW
Sbjct: 241 PLKQSLTSHVGPTTLAIFLSTHYAGQDLVPKFRAGEPWKKVFGPVFLYLNSTSVGDDPFW 300

Query: 301 LWEDAKIQMMAEVDSWPYSFPASEDFPKKDQRGIVSGRLLVFDR 344
           LWEDAKIQMMAEVDSWPYSFPASEDFPKKDQRGIVSGRLLVFDR
Sbjct: 301 LWEDAKIQMMAEVDSWPYSFPASEDFPKKDQRGIVSGRLLVFDR 344

[Close]
BLAST of Cucsat.G12992.T4 vs. NCBI nr
Match: XP_008466137.1 (PREDICTED: probable rhamnogalacturonate lyase B isoform X1 [Cucumis melo] >KAA0038653.1 putative rhamnogalacturonate lyase B isoform X1 [Cucumis melo var. makuwa] >TYK31256.1 putative rhamnogalacturonate lyase B isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 708 bits (1827), Expect = 5.68e-253
Identity = 334/344 (97.09%), Postives = 340/344 (98.84%), Query Frame = 0 

Query: 1   MSSRAVRLQIRDHHVVVDNGILQLTLSKPDGIITGVRYNGVDNLLEVLNPESNRGYWDLV 60
           MSS+AVRLQIRDHHVVVDNGILQLTLSKPDGIITG+RYNGVDNLLEVLNPESNRGYWDLV
Sbjct: 1   MSSKAVRLQIRDHHVVVDNGILQLTLSKPDGIITGIRYNGVDNLLEVLNPESNRGYWDLV 60

Query: 61  WNSPGSKGVFDVIKGSRFRVIVENEEQVELSFVRMWDPSLEGKFVPLNIDKRFIVLRGSS 120
           WNSPGSKG+FDVIKGSRF VIVENEEQVELSFVRMWDPSLEGKFVPLNIDKRFIVLRGSS
Sbjct: 61  WNSPGSKGIFDVIKGSRFSVIVENEEQVELSFVRMWDPSLEGKFVPLNIDKRFIVLRGSS 120

Query: 121 GFYSYAIYEHLKDWPDFDIGETRITFKLRKDKFQYMAVADNRQRVMPLPDDRLSGRCQTL 180
           GFYSYAIYEHLKDWPDFDIGETRITFKLRKDKFQYMAVADNRQRVMPLPDDRLSGRCQTL
Sbjct: 121 GFYSYAIYEHLKDWPDFDIGETRITFKLRKDKFQYMAVADNRQRVMPLPDDRLSGRCQTL 180

Query: 181 AYPEAVLLTNPKNPALKGEVDDKYQYSCENNNLKVHGWISTNPPTGFWQITPSDEFRSGG 240
           AYPEAVLLT+PKN ALKGEVDDKYQYSCENNNLKVHGWISTNPPTGFWQITPSDEFRSGG
Sbjct: 181 AYPEAVLLTDPKNSALKGEVDDKYQYSCENNNLKVHGWISTNPPTGFWQITPSDEFRSGG 240

Query: 241 PLKQSLTSHVGPTTLAIFLSTHYAGQDLVPKFRAGEPWKKVFGPVFLYLNSTSVGDDPFW 300
           PLKQSLTSHVGPTTLAIFLS HYAGQDLVPKFRAGEPWKKVFGPVFLYLNSTSVGDDPFW
Sbjct: 241 PLKQSLTSHVGPTTLAIFLSAHYAGQDLVPKFRAGEPWKKVFGPVFLYLNSTSVGDDPFW 300

Query: 301 LWEDAKIQMMAEVDSWPYSFPASEDFPKKDQRGIVSGRLLVFDR 344
           LWEDAKIQMMAEV+SWPYSFPASEDF KKDQRG+VSGRLLVFDR
Sbjct: 301 LWEDAKIQMMAEVESWPYSFPASEDFSKKDQRGMVSGRLLVFDR 344

[Close]
BLAST of Cucsat.G12992.T4 vs. NCBI nr
Match: XP_038897922.1 (probable rhamnogalacturonate lyase B [Benincasa hispida])

HSP 1 Score: 692 bits (1785), Expect = 1.38e-246
Identity = 324/344 (94.19%), Postives = 332/344 (96.51%), Query Frame = 0 

Query: 1   MSSRAVRLQIRDHHVVVDNGILQLTLSKPDGIITGVRYNGVDNLLEVLNPESNRGYWDLV 60
           MSSR VRLQIRDHHVVV+NGILQLTLSKPDGIITG+RYNGVDNLLEVLNPESNRGYWDLV
Sbjct: 1   MSSRGVRLQIRDHHVVVENGILQLTLSKPDGIITGIRYNGVDNLLEVLNPESNRGYWDLV 60

Query: 61  WNSPGSKGVFDVIKGSRFRVIVENEEQVELSFVRMWDPSLEGKFVPLNIDKRFIVLRGSS 120
           WNSPGSKG+FDVIKGS FRVIVENEEQVELSF+RMWDPSLEGK VPLNIDKRFIVLRGSS
Sbjct: 61  WNSPGSKGIFDVIKGSSFRVIVENEEQVELSFMRMWDPSLEGKLVPLNIDKRFIVLRGSS 120

Query: 121 GFYSYAIYEHLKDWPDFDIGETRITFKLRKDKFQYMAVADNRQRVMPLPDDRLSGRCQTL 180
           GFYSYAIYEHLKDWPDFDIGETRITFKLRKDKFQYMAVADNRQ+VMPLPDDRLSGRCQTL
Sbjct: 121 GFYSYAIYEHLKDWPDFDIGETRITFKLRKDKFQYMAVADNRQKVMPLPDDRLSGRCQTL 180

Query: 181 AYPEAVLLTNPKNPALKGEVDDKYQYSCENNNLKVHGWISTNPPTGFWQITPSDEFRSGG 240
           AYPEAVLLTNPKNP LKGEVDDKYQYSCEN +LKVHGWI TNPPTGFW ITPSDEFRSGG
Sbjct: 181 AYPEAVLLTNPKNPELKGEVDDKYQYSCENKDLKVHGWICTNPPTGFWHITPSDEFRSGG 240

Query: 241 PLKQSLTSHVGPTTLAIFLSTHYAGQDLVPKFRAGEPWKKVFGPVFLYLNSTSVGDDPFW 300
           PLKQSLTSHVGPTTLAIFLS HYAGQDLVPKFRAGEPWKKVFGPVF YLNSTSVGDDPFW
Sbjct: 241 PLKQSLTSHVGPTTLAIFLSAHYAGQDLVPKFRAGEPWKKVFGPVFFYLNSTSVGDDPFW 300

Query: 301 LWEDAKIQMMAEVDSWPYSFPASEDFPKKDQRGIVSGRLLVFDR 344
           LWEDAKIQMMAEV+SWPYSFPASEDFPK DQRG+V GRLLV DR
Sbjct: 301 LWEDAKIQMMAEVESWPYSFPASEDFPKVDQRGVVRGRLLVLDR 344

[Close]
BLAST of Cucsat.G12992.T4 vs. NCBI nr
Match: XP_022940914.1 (probable rhamnogalacturonate lyase B isoform X2 [Cucurbita moschata])

HSP 1 Score: 677 bits (1746), Expect = 9.87e-242
Identity = 316/344 (91.86%), Postives = 327/344 (95.06%), Query Frame = 0 

Query: 1   MSSRAVRLQIRDHHVVVDNGILQLTLSKPDGIITGVRYNGVDNLLEVLNPESNRGYWDLV 60
           MSSR VRLQIRDHHVVVDNGILQLTLSKPDGIITG+RYNGVDNLLEVLNPESNRGYWD+V
Sbjct: 1   MSSRGVRLQIRDHHVVVDNGILQLTLSKPDGIITGIRYNGVDNLLEVLNPESNRGYWDIV 60

Query: 61  WNSPGSKGVFDVIKGSRFRVIVENEEQVELSFVRMWDPSLEGKFVPLNIDKRFIVLRGSS 120
           WNSPGS+G+FDVIKGS FRVIVENEEQVELSF RMWDPSLEGK VPLNIDKRFIVLRGSS
Sbjct: 61  WNSPGSQGIFDVIKGSSFRVIVENEEQVELSFTRMWDPSLEGKVVPLNIDKRFIVLRGSS 120

Query: 121 GFYSYAIYEHLKDWPDFDIGETRITFKLRKDKFQYMAVADNRQRVMPLPDDRLSGRCQTL 180
           GFYSYAIYEHLKDWPDFDIGETRITFKLRKDKFQYMAVADNRQR+MPLPDDRLSGRCQTL
Sbjct: 121 GFYSYAIYEHLKDWPDFDIGETRITFKLRKDKFQYMAVADNRQRLMPLPDDRLSGRCQTL 180

Query: 181 AYPEAVLLTNPKNPALKGEVDDKYQYSCENNNLKVHGWISTNPPTGFWQITPSDEFRSGG 240
            +PEAVLLTNPKNP  + EVDDKYQYSC+N +LKVHGWISTNPP GFWQITPSDEFRSGG
Sbjct: 181 GFPEAVLLTNPKNPEHRDEVDDKYQYSCQNKDLKVHGWISTNPPIGFWQITPSDEFRSGG 240

Query: 241 PLKQSLTSHVGPTTLAIFLSTHYAGQDLVPKFRAGEPWKKVFGPVFLYLNSTSVGDDPFW 300
           P KQSLTSHVGPTTLAIFLSTHYAGQDLVPKFR GEPWKKVFGPVFLYLNST  GDDPFW
Sbjct: 241 PHKQSLTSHVGPTTLAIFLSTHYAGQDLVPKFRNGEPWKKVFGPVFLYLNSTKAGDDPFW 300

Query: 301 LWEDAKIQMMAEVDSWPYSFPASEDFPKKDQRGIVSGRLLVFDR 344
           LWEDAKIQMMAEV SWPYSFPAS+DFPK DQRG +SGRLLVFDR
Sbjct: 301 LWEDAKIQMMAEVQSWPYSFPASDDFPKLDQRGTISGRLLVFDR 344

[Close]
BLAST of Cucsat.G12992.T4 vs. NCBI nr
Match: XP_023524657.1 (probable rhamnogalacturonate lyase B isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 674 bits (1739), Expect = 1.15e-240
Identity = 315/344 (91.57%), Postives = 326/344 (94.77%), Query Frame = 0 

Query: 1   MSSRAVRLQIRDHHVVVDNGILQLTLSKPDGIITGVRYNGVDNLLEVLNPESNRGYWDLV 60
           MSSR VRLQIRDHHVVVDNGILQLTLSKPDGIITG+RYNGVDNLLEVLNPESNRGYWD+V
Sbjct: 1   MSSRGVRLQIRDHHVVVDNGILQLTLSKPDGIITGIRYNGVDNLLEVLNPESNRGYWDIV 60

Query: 61  WNSPGSKGVFDVIKGSRFRVIVENEEQVELSFVRMWDPSLEGKFVPLNIDKRFIVLRGSS 120
           WNSPGS+G+FDVIKGS FRVIVENEEQVELSF R+WDPSLEGK VPLNIDKRFIVLRGSS
Sbjct: 61  WNSPGSQGIFDVIKGSSFRVIVENEEQVELSFTRIWDPSLEGKVVPLNIDKRFIVLRGSS 120

Query: 121 GFYSYAIYEHLKDWPDFDIGETRITFKLRKDKFQYMAVADNRQRVMPLPDDRLSGRCQTL 180
           GFYSYAIYEHLKDWPDFDIGETRITFKLRKDKFQYMAVADNRQR+MPLPDDRLSGRCQTL
Sbjct: 121 GFYSYAIYEHLKDWPDFDIGETRITFKLRKDKFQYMAVADNRQRLMPLPDDRLSGRCQTL 180

Query: 181 AYPEAVLLTNPKNPALKGEVDDKYQYSCENNNLKVHGWISTNPPTGFWQITPSDEFRSGG 240
            +PEAVLLT+PKNP  K EVDDKYQYSCEN +LKVHGWISTNPP GFWQITPSDEFRSGG
Sbjct: 181 GFPEAVLLTHPKNPEHKDEVDDKYQYSCENKDLKVHGWISTNPPIGFWQITPSDEFRSGG 240

Query: 241 PLKQSLTSHVGPTTLAIFLSTHYAGQDLVPKFRAGEPWKKVFGPVFLYLNSTSVGDDPFW 300
           P KQSLTSHVGPTTLAIFLSTHYAGQDLVPKFR GEPWKKVFGPVFLYLNST  GDDPFW
Sbjct: 241 PHKQSLTSHVGPTTLAIFLSTHYAGQDLVPKFRNGEPWKKVFGPVFLYLNSTKAGDDPFW 300

Query: 301 LWEDAKIQMMAEVDSWPYSFPASEDFPKKDQRGIVSGRLLVFDR 344
           LWEDAKIQMM EV SWPYSFPAS+DFPK DQRG +SGRLLVFDR
Sbjct: 301 LWEDAKIQMMTEVQSWPYSFPASDDFPKLDQRGTISGRLLVFDR 344

[Close]
BLAST of Cucsat.G12992.T4 vs. ExPASy TrEMBL
Match: A0A0A0LJQ9 (Rhamnogalacturonan endolyase OS=Cucumis sativus OX=3659 GN=Csa_3G892770 PE=3 SV=1)

HSP 1 Score: 725 bits (1871), Expect = 5.40e-260
Identity = 344/344 (100.00%), Postives = 344/344 (100.00%), Query Frame = 0 

Query: 1   MSSRAVRLQIRDHHVVVDNGILQLTLSKPDGIITGVRYNGVDNLLEVLNPESNRGYWDLV 60
           MSSRAVRLQIRDHHVVVDNGILQLTLSKPDGIITGVRYNGVDNLLEVLNPESNRGYWDLV
Sbjct: 1   MSSRAVRLQIRDHHVVVDNGILQLTLSKPDGIITGVRYNGVDNLLEVLNPESNRGYWDLV 60

Query: 61  WNSPGSKGVFDVIKGSRFRVIVENEEQVELSFVRMWDPSLEGKFVPLNIDKRFIVLRGSS 120
           WNSPGSKGVFDVIKGSRFRVIVENEEQVELSFVRMWDPSLEGKFVPLNIDKRFIVLRGSS
Sbjct: 61  WNSPGSKGVFDVIKGSRFRVIVENEEQVELSFVRMWDPSLEGKFVPLNIDKRFIVLRGSS 120

Query: 121 GFYSYAIYEHLKDWPDFDIGETRITFKLRKDKFQYMAVADNRQRVMPLPDDRLSGRCQTL 180
           GFYSYAIYEHLKDWPDFDIGETRITFKLRKDKFQYMAVADNRQRVMPLPDDRLSGRCQTL
Sbjct: 121 GFYSYAIYEHLKDWPDFDIGETRITFKLRKDKFQYMAVADNRQRVMPLPDDRLSGRCQTL 180

Query: 181 AYPEAVLLTNPKNPALKGEVDDKYQYSCENNNLKVHGWISTNPPTGFWQITPSDEFRSGG 240
           AYPEAVLLTNPKNPALKGEVDDKYQYSCENNNLKVHGWISTNPPTGFWQITPSDEFRSGG
Sbjct: 181 AYPEAVLLTNPKNPALKGEVDDKYQYSCENNNLKVHGWISTNPPTGFWQITPSDEFRSGG 240

Query: 241 PLKQSLTSHVGPTTLAIFLSTHYAGQDLVPKFRAGEPWKKVFGPVFLYLNSTSVGDDPFW 300
           PLKQSLTSHVGPTTLAIFLSTHYAGQDLVPKFRAGEPWKKVFGPVFLYLNSTSVGDDPFW
Sbjct: 241 PLKQSLTSHVGPTTLAIFLSTHYAGQDLVPKFRAGEPWKKVFGPVFLYLNSTSVGDDPFW 300

Query: 301 LWEDAKIQMMAEVDSWPYSFPASEDFPKKDQRGIVSGRLLVFDR 344
           LWEDAKIQMMAEVDSWPYSFPASEDFPKKDQRGIVSGRLLVFDR
Sbjct: 301 LWEDAKIQMMAEVDSWPYSFPASEDFPKKDQRGIVSGRLLVFDR 344

[Close]
BLAST of Cucsat.G12992.T4 vs. ExPASy TrEMBL
Match: A0A5D3E6J1 (Rhamnogalacturonan endolyase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G005450 PE=3 SV=1)

HSP 1 Score: 708 bits (1827), Expect = 2.75e-253
Identity = 334/344 (97.09%), Postives = 340/344 (98.84%), Query Frame = 0 

Query: 1   MSSRAVRLQIRDHHVVVDNGILQLTLSKPDGIITGVRYNGVDNLLEVLNPESNRGYWDLV 60
           MSS+AVRLQIRDHHVVVDNGILQLTLSKPDGIITG+RYNGVDNLLEVLNPESNRGYWDLV
Sbjct: 1   MSSKAVRLQIRDHHVVVDNGILQLTLSKPDGIITGIRYNGVDNLLEVLNPESNRGYWDLV 60

Query: 61  WNSPGSKGVFDVIKGSRFRVIVENEEQVELSFVRMWDPSLEGKFVPLNIDKRFIVLRGSS 120
           WNSPGSKG+FDVIKGSRF VIVENEEQVELSFVRMWDPSLEGKFVPLNIDKRFIVLRGSS
Sbjct: 61  WNSPGSKGIFDVIKGSRFSVIVENEEQVELSFVRMWDPSLEGKFVPLNIDKRFIVLRGSS 120

Query: 121 GFYSYAIYEHLKDWPDFDIGETRITFKLRKDKFQYMAVADNRQRVMPLPDDRLSGRCQTL 180
           GFYSYAIYEHLKDWPDFDIGETRITFKLRKDKFQYMAVADNRQRVMPLPDDRLSGRCQTL
Sbjct: 121 GFYSYAIYEHLKDWPDFDIGETRITFKLRKDKFQYMAVADNRQRVMPLPDDRLSGRCQTL 180

Query: 181 AYPEAVLLTNPKNPALKGEVDDKYQYSCENNNLKVHGWISTNPPTGFWQITPSDEFRSGG 240
           AYPEAVLLT+PKN ALKGEVDDKYQYSCENNNLKVHGWISTNPPTGFWQITPSDEFRSGG
Sbjct: 181 AYPEAVLLTDPKNSALKGEVDDKYQYSCENNNLKVHGWISTNPPTGFWQITPSDEFRSGG 240

Query: 241 PLKQSLTSHVGPTTLAIFLSTHYAGQDLVPKFRAGEPWKKVFGPVFLYLNSTSVGDDPFW 300
           PLKQSLTSHVGPTTLAIFLS HYAGQDLVPKFRAGEPWKKVFGPVFLYLNSTSVGDDPFW
Sbjct: 241 PLKQSLTSHVGPTTLAIFLSAHYAGQDLVPKFRAGEPWKKVFGPVFLYLNSTSVGDDPFW 300

Query: 301 LWEDAKIQMMAEVDSWPYSFPASEDFPKKDQRGIVSGRLLVFDR 344
           LWEDAKIQMMAEV+SWPYSFPASEDF KKDQRG+VSGRLLVFDR
Sbjct: 301 LWEDAKIQMMAEVESWPYSFPASEDFSKKDQRGMVSGRLLVFDR 344

[Close]
BLAST of Cucsat.G12992.T4 vs. ExPASy TrEMBL
Match: A0A1S3CQJ4 (Rhamnogalacturonan endolyase OS=Cucumis melo OX=3656 GN=LOC103503644 PE=3 SV=1)

HSP 1 Score: 708 bits (1827), Expect = 2.75e-253
Identity = 334/344 (97.09%), Postives = 340/344 (98.84%), Query Frame = 0 

Query: 1   MSSRAVRLQIRDHHVVVDNGILQLTLSKPDGIITGVRYNGVDNLLEVLNPESNRGYWDLV 60
           MSS+AVRLQIRDHHVVVDNGILQLTLSKPDGIITG+RYNGVDNLLEVLNPESNRGYWDLV
Sbjct: 1   MSSKAVRLQIRDHHVVVDNGILQLTLSKPDGIITGIRYNGVDNLLEVLNPESNRGYWDLV 60

Query: 61  WNSPGSKGVFDVIKGSRFRVIVENEEQVELSFVRMWDPSLEGKFVPLNIDKRFIVLRGSS 120
           WNSPGSKG+FDVIKGSRF VIVENEEQVELSFVRMWDPSLEGKFVPLNIDKRFIVLRGSS
Sbjct: 61  WNSPGSKGIFDVIKGSRFSVIVENEEQVELSFVRMWDPSLEGKFVPLNIDKRFIVLRGSS 120

Query: 121 GFYSYAIYEHLKDWPDFDIGETRITFKLRKDKFQYMAVADNRQRVMPLPDDRLSGRCQTL 180
           GFYSYAIYEHLKDWPDFDIGETRITFKLRKDKFQYMAVADNRQRVMPLPDDRLSGRCQTL
Sbjct: 121 GFYSYAIYEHLKDWPDFDIGETRITFKLRKDKFQYMAVADNRQRVMPLPDDRLSGRCQTL 180

Query: 181 AYPEAVLLTNPKNPALKGEVDDKYQYSCENNNLKVHGWISTNPPTGFWQITPSDEFRSGG 240
           AYPEAVLLT+PKN ALKGEVDDKYQYSCENNNLKVHGWISTNPPTGFWQITPSDEFRSGG
Sbjct: 181 AYPEAVLLTDPKNSALKGEVDDKYQYSCENNNLKVHGWISTNPPTGFWQITPSDEFRSGG 240

Query: 241 PLKQSLTSHVGPTTLAIFLSTHYAGQDLVPKFRAGEPWKKVFGPVFLYLNSTSVGDDPFW 300
           PLKQSLTSHVGPTTLAIFLS HYAGQDLVPKFRAGEPWKKVFGPVFLYLNSTSVGDDPFW
Sbjct: 241 PLKQSLTSHVGPTTLAIFLSAHYAGQDLVPKFRAGEPWKKVFGPVFLYLNSTSVGDDPFW 300

Query: 301 LWEDAKIQMMAEVDSWPYSFPASEDFPKKDQRGIVSGRLLVFDR 344
           LWEDAKIQMMAEV+SWPYSFPASEDF KKDQRG+VSGRLLVFDR
Sbjct: 301 LWEDAKIQMMAEVESWPYSFPASEDFSKKDQRGMVSGRLLVFDR 344

[Close]
BLAST of Cucsat.G12992.T4 vs. ExPASy TrEMBL
Match: A0A6J1FLP1 (Rhamnogalacturonan endolyase OS=Cucurbita moschata OX=3662 GN=LOC111446358 PE=3 SV=1)

HSP 1 Score: 677 bits (1746), Expect = 4.78e-242
Identity = 316/344 (91.86%), Postives = 327/344 (95.06%), Query Frame = 0 

Query: 1   MSSRAVRLQIRDHHVVVDNGILQLTLSKPDGIITGVRYNGVDNLLEVLNPESNRGYWDLV 60
           MSSR VRLQIRDHHVVVDNGILQLTLSKPDGIITG+RYNGVDNLLEVLNPESNRGYWD+V
Sbjct: 1   MSSRGVRLQIRDHHVVVDNGILQLTLSKPDGIITGIRYNGVDNLLEVLNPESNRGYWDIV 60

Query: 61  WNSPGSKGVFDVIKGSRFRVIVENEEQVELSFVRMWDPSLEGKFVPLNIDKRFIVLRGSS 120
           WNSPGS+G+FDVIKGS FRVIVENEEQVELSF RMWDPSLEGK VPLNIDKRFIVLRGSS
Sbjct: 61  WNSPGSQGIFDVIKGSSFRVIVENEEQVELSFTRMWDPSLEGKVVPLNIDKRFIVLRGSS 120

Query: 121 GFYSYAIYEHLKDWPDFDIGETRITFKLRKDKFQYMAVADNRQRVMPLPDDRLSGRCQTL 180
           GFYSYAIYEHLKDWPDFDIGETRITFKLRKDKFQYMAVADNRQR+MPLPDDRLSGRCQTL
Sbjct: 121 GFYSYAIYEHLKDWPDFDIGETRITFKLRKDKFQYMAVADNRQRLMPLPDDRLSGRCQTL 180

Query: 181 AYPEAVLLTNPKNPALKGEVDDKYQYSCENNNLKVHGWISTNPPTGFWQITPSDEFRSGG 240
            +PEAVLLTNPKNP  + EVDDKYQYSC+N +LKVHGWISTNPP GFWQITPSDEFRSGG
Sbjct: 181 GFPEAVLLTNPKNPEHRDEVDDKYQYSCQNKDLKVHGWISTNPPIGFWQITPSDEFRSGG 240

Query: 241 PLKQSLTSHVGPTTLAIFLSTHYAGQDLVPKFRAGEPWKKVFGPVFLYLNSTSVGDDPFW 300
           P KQSLTSHVGPTTLAIFLSTHYAGQDLVPKFR GEPWKKVFGPVFLYLNST  GDDPFW
Sbjct: 241 PHKQSLTSHVGPTTLAIFLSTHYAGQDLVPKFRNGEPWKKVFGPVFLYLNSTKAGDDPFW 300

Query: 301 LWEDAKIQMMAEVDSWPYSFPASEDFPKKDQRGIVSGRLLVFDR 344
           LWEDAKIQMMAEV SWPYSFPAS+DFPK DQRG +SGRLLVFDR
Sbjct: 301 LWEDAKIQMMAEVQSWPYSFPASDDFPKLDQRGTISGRLLVFDR 344

[Close]
BLAST of Cucsat.G12992.T4 vs. ExPASy TrEMBL
Match: A0A6J1FQM1 (Rhamnogalacturonan endolyase OS=Cucurbita moschata OX=3662 GN=LOC111446358 PE=3 SV=1)

HSP 1 Score: 677 bits (1746), Expect = 5.67e-241
Identity = 316/344 (91.86%), Postives = 327/344 (95.06%), Query Frame = 0 

Query: 1   MSSRAVRLQIRDHHVVVDNGILQLTLSKPDGIITGVRYNGVDNLLEVLNPESNRGYWDLV 60
           MSSR VRLQIRDHHVVVDNGILQLTLSKPDGIITG+RYNGVDNLLEVLNPESNRGYWD+V
Sbjct: 1   MSSRGVRLQIRDHHVVVDNGILQLTLSKPDGIITGIRYNGVDNLLEVLNPESNRGYWDIV 60

Query: 61  WNSPGSKGVFDVIKGSRFRVIVENEEQVELSFVRMWDPSLEGKFVPLNIDKRFIVLRGSS 120
           WNSPGS+G+FDVIKGS FRVIVENEEQVELSF RMWDPSLEGK VPLNIDKRFIVLRGSS
Sbjct: 61  WNSPGSQGIFDVIKGSSFRVIVENEEQVELSFTRMWDPSLEGKVVPLNIDKRFIVLRGSS 120

Query: 121 GFYSYAIYEHLKDWPDFDIGETRITFKLRKDKFQYMAVADNRQRVMPLPDDRLSGRCQTL 180
           GFYSYAIYEHLKDWPDFDIGETRITFKLRKDKFQYMAVADNRQR+MPLPDDRLSGRCQTL
Sbjct: 121 GFYSYAIYEHLKDWPDFDIGETRITFKLRKDKFQYMAVADNRQRLMPLPDDRLSGRCQTL 180

Query: 181 AYPEAVLLTNPKNPALKGEVDDKYQYSCENNNLKVHGWISTNPPTGFWQITPSDEFRSGG 240
            +PEAVLLTNPKNP  + EVDDKYQYSC+N +LKVHGWISTNPP GFWQITPSDEFRSGG
Sbjct: 181 GFPEAVLLTNPKNPEHRDEVDDKYQYSCQNKDLKVHGWISTNPPIGFWQITPSDEFRSGG 240

Query: 241 PLKQSLTSHVGPTTLAIFLSTHYAGQDLVPKFRAGEPWKKVFGPVFLYLNSTSVGDDPFW 300
           P KQSLTSHVGPTTLAIFLSTHYAGQDLVPKFR GEPWKKVFGPVFLYLNST  GDDPFW
Sbjct: 241 PHKQSLTSHVGPTTLAIFLSTHYAGQDLVPKFRNGEPWKKVFGPVFLYLNSTKAGDDPFW 300

Query: 301 LWEDAKIQMMAEVDSWPYSFPASEDFPKKDQRGIVSGRLLVFDR 344
           LWEDAKIQMMAEV SWPYSFPAS+DFPK DQRG +SGRLLVFDR
Sbjct: 301 LWEDAKIQMMAEVQSWPYSFPASDDFPKLDQRGTISGRLLVFDR 344

The following BLAST results are available for this feature:
BLAST of Cucsat.G12992.T4 vs.
Match NameE-valueIdentityDescription
BLAST of Cucsat.G12992.T4 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_004136250.11.11e-259100.00probable rhamnogalacturonate lyase B isoform X1 [Cucumis sativus] >KGN60276.1 hy... [more]
XP_008466137.15.68e-25397.09PREDICTED: probable rhamnogalacturonate lyase B isoform X1 [Cucumis melo] >KAA00... [more]
XP_038897922.11.38e-24694.19probable rhamnogalacturonate lyase B [Benincasa hispida][more]
XP_022940914.19.87e-24291.86probable rhamnogalacturonate lyase B isoform X2 [Cucurbita moschata][more]
XP_023524657.11.15e-24091.57probable rhamnogalacturonate lyase B isoform X2 [Cucurbita pepo subsp. pepo][more]
BLAST of Cucsat.G12992.T4 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LJQ95.40e-260100.00Rhamnogalacturonan endolyase OS=Cucumis sativus OX=3659 GN=Csa_3G892770 PE=3 SV=... [more]
A0A5D3E6J12.75e-25397.09Rhamnogalacturonan endolyase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sca... [more]
A0A1S3CQJ42.75e-25397.09Rhamnogalacturonan endolyase OS=Cucumis melo OX=3656 GN=LOC103503644 PE=3 SV=1[more]
A0A6J1FLP14.78e-24291.86Rhamnogalacturonan endolyase OS=Cucurbita moschata OX=3662 GN=LOC111446358 PE=3 ... [more]
A0A6J1FQM15.67e-24191.86Rhamnogalacturonan endolyase OS=Cucurbita moschata OX=3662 GN=LOC111446358 PE=3 ... [more]
InterPro
Analysis Name: InterPro Annotations of Cucumber (B10) v3
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR014718Glycoside hydrolase-type carbohydrate-bindingGENE3D2.70.98.10coord: 5..304
e-value: 1.4E-11
score: 46.3
IPR010325Rhamnogalacturonate lyasePFAMPF06045Rhamnogal_lyasecoord: 9..200
e-value: 5.1E-93
score: 310.4
NoneNo IPR availablePANTHERPTHR32018RHAMNOGALACTURONATE LYASE FAMILY PROTEINcoord: 1..344
NoneNo IPR availablePANTHERPTHR32018:SF8RHAMNOGALACTURONATE LYASE FAMILY PROTEINcoord: 1..344
NoneNo IPR availableCDDcd10320RGL4_Ncoord: 14..293
e-value: 4.05607E-83
score: 251.154
IPR011013Galactose mutarotase-like domain superfamilySUPERFAMILY74650Galactose mutarotase-likecoord: 12..296

Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Cucsat.G12992Cucsat.G12992gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Cucsat.G12992.T4.E1Cucsat.G12992.T4.E1exon
Cucsat.G12992.T4.E2Cucsat.G12992.T4.E2exon
Cucsat.G12992.T4.E3Cucsat.G12992.T4.E3exon
Cucsat.G12992.T4.E4Cucsat.G12992.T4.E4exon
Cucsat.G12992.T4.E5Cucsat.G12992.T4.E5exon
Cucsat.G12992.T4.E6Cucsat.G12992.T4.E6exon
Cucsat.G12992.T4.E7Cucsat.G12992.T4.E7exon
Cucsat.G12992.T4.E8Cucsat.G12992.T4.E8exon
Cucsat.G12992.T4.E9Cucsat.G12992.T4.E9exon
Cucsat.G12992.T4.E10Cucsat.G12992.T4.E10exon
Cucsat.G12992.T4.E11Cucsat.G12992.T4.E11exon
Cucsat.G12992.T4.E12Cucsat.G12992.T4.E12exon
Cucsat.G12992.T4.E13Cucsat.G12992.T4.E13exon
Cucsat.G12992.T4.E14Cucsat.G12992.T4.E14exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Cucsat.G12992.T4.C9Cucsat.G12992.T4.C9CDS
Cucsat.G12992.T4.C8Cucsat.G12992.T4.C8CDS
Cucsat.G12992.T4.C7Cucsat.G12992.T4.C7CDS
Cucsat.G12992.T4.C6Cucsat.G12992.T4.C6CDS
Cucsat.G12992.T4.C5Cucsat.G12992.T4.C5CDS
Cucsat.G12992.T4.C4Cucsat.G12992.T4.C4CDS
Cucsat.G12992.T4.C3Cucsat.G12992.T4.C3CDS
Cucsat.G12992.T4.C2Cucsat.G12992.T4.C2CDS
Cucsat.G12992.T4.C1Cucsat.G12992.T4.C1CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Cucsat.G12992.T4Cucsat.G12992.T4-proteinpolypeptide


GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0005975 carbohydrate metabolic process
cellular_component GO:0005576 extracellular region
molecular_function GO:0030246 carbohydrate binding
molecular_function GO:0003824 catalytic activity
molecular_function GO:0102210 rhamnogalacturonan endolyase activity