Cucsat.G12064.T11 (mRNA) Cucumber (B10) v3

Overview
NameCucsat.G12064.T11
TypemRNA
OrganismCucumis sativus L. var. sativus cv B10 (Cucumber (B10) v3)
DescriptionDNA-directed RNA polymerases II and V subunit 8A-like
Locationctg1821: 97015 .. 99919 (+)
RNA-Seq ExpressionCucsat.G12064.T11
SyntenyCucsat.G12064.T11
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
TGTAAATATAAACTATGAACTCCCAACGTACTTTTTCTTAAAAAAATATTAATAGTAAACAATTTTACTTTTAATACATATGTATAAGTATATAAACGGCGATGGAGTAAGGTTTGTCTTTGTCATGCCATTGAATTTTAAGCTTCGAATATGTTAAATTCATATTTGTTAATAGAAAAATAAGGAAAAAGTGTACCCCTAAAATAAAACCCTAAACCCTTTCATATTCCTCTCACTCTTGTTCCACCTCCGTCTTTGCGCCTTTGCGCCAAATCTCTATCTATGTATCACTCTCAATTGAGCCTTGATCATCTGTAAATTTTAGTTTTTGCTTTTTTTTTTTCCTGCCTTTCTTCCCATATCTAATATTTTTTTATGTTGTCTACCAACTCAGATTTGCGTTCTGAGAAATAAATTCTCCATAAACATGGCGGGGCTTCTATTTAATGATATTTTCAAGGTCAAGTGTGTCAACCCAGATGGTAAAAAGTATGATAAAGGTACTTCCCTCAAGCTTCTTATTGCTCTTTCATTCTTTTAATTCTTAGTTTCTGGTTTTTGAACTTTTGAGCCTCCGTTGAGATGTTGGGAATCACAAAACTCACTTGTTACAAGACGCCGCTCTCTCAATAGACGAGCTACTCTCATTGCCAATTGGTTTTGAGATGCCCATGCTATAAAATAGCCCCCTTTGTGGACTTGAAACTTCTTCACTGTATTGATTTTAGCGTGAAGGATTTTACAGGACGCACATTGATTGCATAAAATTGTTGTTCTAGTTTCTAGAATTGAAGCACGGAGTGAGAAGCTTTCGATGCATATGCTGCTGGATGTAAATACAGAGATATATCCTATTGATGAAGGTGAGAAGCTTCTGATGGTCTTGTCTCCCACGTTGAACTATGATGGATCTCCTGTTACCAGCTATAAAGATCAGGTAATCCCTCCCAATGTTTTATTTAACTTTGTTGATGGAGGATTCGGGCTGTTCCTTTTCTGTTTGCATTGTTTAAAAGACCAGACAGGTAAAAAAAAAAAAACTGTTGGCATCTGCGTCCATATCAATTTTTCCATGAGTAGAAATGGTAGATATATAATAATATTTTATAGGAATTACTAAAGATATCATTAATAACTCCTCAAGGTATCTCTGCGACTGAACATTTGGAGAAGGATCTTATCAAGGAGTCTAAAAAAAACTAGAAAAAAGGGTCTGCAAATTGCAGGGCAAGTATCCATTGGTTTCGTTCTGTCAAGGCCGTGCTTGTGCTAGCCATGTCTCTTGAAAACAAATGTGAGGAAAGGAATGTGACTTATTTAGGCTCCTTATGACTTGTGTCTAAGGCTTGTGATGCATGACATAGATTTGTTGAGTCTTGAATATGCGCTTGGTGTTCCAACTTCCCTTAAGACACTGAGGAGCATCTTATTAATCTCAATAGAGTCCTTCAAGTTTTTGAATTTCTTGAACCAATATTTCGGAGGAGGCCCTTGTTTTAATCTACCTTGTTGCATCTATGGCTCAAAAGAAATTGGAGAATCTTTAGAGATATAGAAAAGTCATGAGAGGTGGTTTAGAGTGAGTTGCATTTCAATGCCTCTCTGTAGGCGTGCAGAGAGCTTGTTCCACTTCTTTTTGAAAAAAACTGTATTGTTCTTTTAATTTTGTTCTCTTTGCTTCTATGTTATGCTGTACTGTCATTTATTTTTATCTGCTCCTTTTGCTCTTTCATTACATTTATTTCTTATGAAGAAAATATGCACTTGTTAATTTATTTAATTTTATTTTAAAGGTTCGTAACTTTGTATAAATTGCCAACACAAGCATAGCGTAGTTGGCATCTGTATGTTCCCAAGGACAAGATGTTCGTGTTCAAATTCCCCACCCCAAGTTGTACTTAAAAAGACTTTTTTTTAAAGAAACTTCGTATAGACTATTTTTATAATCAAAATTTTGCAGATGTTGGATAGCATTAGAAATGTAGATACACTTTTAACATAACGTTAACAAGAGAAACTTTGACAAACCTGGTTTAATTCAGTTTCCATGATCGTAATTGTAAACATTACACATTTGAAATTTTAGTGGTAATATCCTTCAAATGAACTTAATTTTTGGCAGGAAGGGAAGAAATCTCTAGCTGATAAGTTTGAATACATCATGCATGGTAAAACATACAAACTTTCAGATGAAGGCTCAGGTTCAGACTTGAAAGTGTAAGTGACCTAACATTCTCACGATTTTCTGCAACAGTTCAAATCTGTCATTTTCTTGTCAAATCTTCTATGAATAAAACAAGTACCCTAACCAATTGGAGAGGGCAGTTAACCTCTCCTTCCCTACAATTAGACCGTGTACCATGTCCATGACTCCACTAACCGATTGCTTTGGGGATTATACCCCTTTTTACTCTTTCTAGCATAAGTACTAATAATTGAGTCGTATGAGGCGTTTGCAACTCAATTAATAAATTGTTTCACATGTCTCGTAAATCGTTGGCTCTGATGTTGTTTGGTTGGAATGATTGTATATGCAGGGAGGTTTATGCATCTTTTGGAGGACTCCAAATGCTGTTGAAGGGAGATCCCATCCACTGTGCCAAATTCAGGGTGGATCAGAACATGTTTTTGCTCCTTCGAAAACTCACATAAACCATACAAATCTCTAGTATGGCCTTTTGTTATTACAAAAATTGTGATAACTCTGCATAACTATTGATCATATCTGCAGATAAATTTTGAATTGAATTCTTTTACCAGATCGATCTTCATAGTCGTTGTATGGTTAGTGCTATCTTAAAATTTTCTAGTGGTTTGTTTTTTTCACTCAACATTAGTGAGTGTTGCAACAATTCTCCTTAGATTGTAATTTAAATTAATTGAACTATATTATTGACTAATAATT

Coding sequence (CDS)

ATGCATATGCTGCTGGATGTAAATACAGAGATATATCCTATTGATGAAGGTGAGAAGCTTCTGATGGTCTTGTCTCCCACGTTGAACTATGATGGATCTCCTGTTACCAGCTATAAAGATCAGGAAGGGAAGAAATCTCTAGCTGATAAGTTTGAATACATCATGCATGGTAAAACATACAAACTTTCAGATGAAGGCTCAGGTTCAGACTTGAAAGTGGAGGTTTATGCATCTTTTGGAGGACTCCAAATGCTGTTGAAGGGAGATCCCATCCACTGTGCCAAATTCAGGGTGGATCAGAACATGTTTTTGCTCCTTCGAAAACTCACATAA

Protein sequence

MHMLLDVNTEIYPIDEGEKLLMVLSPTLNYDGSPVTSYKDQEGKKSLADKFEYIMHGKTYKLSDEGSGSDLKVEVYASFGGLQMLLKGDPIHCAKFRVDQNMFLLLRKLT
Homology
[Close]
BLAST of Cucsat.G12064.T11 vs. ExPASy Swiss-Prot
Match: O81097 (DNA-directed RNA polymerases II and V subunit 8A OS=Arabidopsis thaliana OX=3702 GN=NRPB8A PE=1 SV=1)

HSP 1 Score: 133.3 bits (334), Expect = 1.7e-30
Identity = 65/109 (59.63%), Postives = 79/109 (72.48%), Query Frame = 0 

Query: 1   MHMLLDVNTEIYPIDEGEKLLMVLSPTLNYDGSPVTSYKDQEGKKSLADKFEYIMHGKTY 60
           M M LDVNTE+YP+  G+K  + L+PTLN DG+P T Y     KK+LADK+EYIMHGK Y
Sbjct: 39  MFMHLDVNTEVYPLAVGDKFTLALAPTLNLDGTPDTGYFTPGAKKTLADKYEYIMHGKLY 98

Query: 61  KLSDEGSGSDLKVEVYASFGGLQMLLKGDPIHCAKFRVDQNMFLLLRKL 110
           K+S E  G   K E+Y SFGGL MLLKGDP H + F +DQ +FLL+RKL
Sbjct: 99  KIS-ERDGKTPKAELYVSFGGLLMLLKGDPAHISHFELDQRLFLLMRKL 146

[Close]
BLAST of Cucsat.G12064.T11 vs. ExPASy Swiss-Prot
Match: Q9M1A8 (DNA-directed RNA polymerases II, IV and V subunit 8B OS=Arabidopsis thaliana OX=3702 GN=NRPB8B PE=1 SV=1)

HSP 1 Score: 131.0 bits (328), Expect = 8.5e-30
Identity = 63/109 (57.80%), Postives = 79/109 (72.48%), Query Frame = 0 

Query: 1   MHMLLDVNTEIYPIDEGEKLLMVLSPTLNYDGSPVTSYKDQEGKKSLADKFEYIMHGKTY 60
           M M LDVNTE+YP+  G+K  + ++PTLN DG+P T Y     KK+LADK+EYIMHGK Y
Sbjct: 39  MFMHLDVNTEVYPLAVGDKFTLAMAPTLNLDGTPDTGYFTPGAKKTLADKYEYIMHGKLY 98

Query: 61  KLSDEGSGSDLKVEVYASFGGLQMLLKGDPIHCAKFRVDQNMFLLLRKL 110
           K+S E  G   K E+Y SFGGL MLL+GDP H + F +DQ +FLL+RKL
Sbjct: 99  KIS-ERDGKTPKAELYVSFGGLLMLLQGDPAHISHFELDQRLFLLMRKL 146

[Close]
BLAST of Cucsat.G12064.T11 vs. ExPASy Swiss-Prot
Match: Q19826 (Probable DNA-directed RNA polymerases I, II, and III subunit RPABC3 OS=Caenorhabditis elegans OX=6239 GN=rpb-8 PE=1 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 5.2e-19
Identity = 44/109 (40.37%), Postives = 73/109 (66.97%), Query Frame = 0 

Query: 1   MHMLLDVNTEIYPIDEGEKLLMVLSPTLNYDGSPVTSYKDQEGKKSLADKFEYIMHGKTY 60
           M +++D+N++IYP+ + +K+ +VL+ TL  DG       D + +     ++EY+M+GK Y
Sbjct: 37  MELIIDINSQIYPLKQNDKVRLVLATTLREDGLADEGEYDPKAEYPRIKQYEYVMYGKVY 96

Query: 61  KLSDEGSGSD-LKVEVYASFGGLQMLLKGDPIHCAKFRVDQNMFLLLRK 109
           +L D+ +G+D  K+  YASFGGL M LKG+ I+   F VD N++LL++K
Sbjct: 97  RLEDDDTGTDGGKLAAYASFGGLLMRLKGEAINLHGFEVDMNLYLLMKK 145

[Close]
BLAST of Cucsat.G12064.T11 vs. ExPASy Swiss-Prot
Match: A8XT81 (Probable DNA-directed RNA polymerases I, II, and III subunit RPABC3 OS=Caenorhabditis briggsae OX=6238 GN=rpb-8 PE=3 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 8.8e-19
Identity = 44/109 (40.37%), Postives = 72/109 (66.06%), Query Frame = 0 

Query: 1   MHMLLDVNTEIYPIDEGEKLLMVLSPTLNYDGSPVTSYKDQEGKKSLADKFEYIMHGKTY 60
           M +++D+N++IYP+ + +K  +VL+ TL  DG       D + +     ++EY+M+GK Y
Sbjct: 37  MELIIDINSQIYPLKQNDKFRLVLATTLREDGLADEGEYDPKAEYPRIKQYEYVMYGKVY 96

Query: 61  KLSDEGSGSD-LKVEVYASFGGLQMLLKGDPIHCAKFRVDQNMFLLLRK 109
           +L D+ SG+D  ++  YASFGGL M LKG+ I+   F VD N++LL++K
Sbjct: 97  RLEDDDSGTDGGQLAAYASFGGLLMRLKGEAINLHGFEVDMNLYLLMKK 145

[Close]
BLAST of Cucsat.G12064.T11 vs. ExPASy Swiss-Prot
Match: Q54YW8 (DNA-directed RNA polymerases I, II, and III subunit rpabc3 OS=Dictyostelium discoideum OX=44689 GN=polr2h PE=3 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 9.8e-18
Identity = 48/108 (44.44%), Postives = 69/108 (63.89%), Query Frame = 0 

Query: 1   MHMLLDVNTEIYPIDEGEKLLMVLSPTLNYDGSPVTSYKDQEGKKSLADKFEYIMHGKTY 60
           M + +D+ T IYP+   E+  MVL+ +LN DGS   S      K SLADK++Y+M+GK +
Sbjct: 37  MDLQIDIATHIYPLGH-ERFKMVLASSLNLDGSSDNSGSYDTNKPSLADKYDYVMYGKIF 96

Query: 61  KLSDEGSGSDLKVEVYASFGGLQMLLKGDPIHCAKFRVDQNMFLLLRK 109
           K   E S S  KV V+ASFGGL +LL+GDP +     +D  ++LL++K
Sbjct: 97  KYQKENSSS--KVSVFASFGGLLVLLQGDPRYLPGIELDARIYLLIKK 141

[Close]
BLAST of Cucsat.G12064.T11 vs. NCBI nr
Match: XP_004149143.1 (DNA-directed RNA polymerases II, IV and V subunit 8B isoform X1 [Cucumis sativus] >XP_011653128.1 DNA-directed RNA polymerases II, IV and V subunit 8B isoform X1 [Cucumis sativus] >XP_011653129.1 DNA-directed RNA polymerases II, IV and V subunit 8B isoform X1 [Cucumis sativus] >XP_031740209.1 DNA-directed RNA polymerases II, IV and V subunit 8B-like isoform X1 [Cucumis sativus] >XP_031740210.1 DNA-directed RNA polymerases II, IV and V subunit 8B-like isoform X1 [Cucumis sativus] >XP_031740211.1 DNA-directed RNA polymerases II, IV and V subunit 8B-like isoform X1 [Cucumis sativus] >XP_031740212.1 DNA-directed RNA polymerases II, IV and V subunit 8B-like isoform X1 [Cucumis sativus] >XP_031745816.1 DNA-directed RNA polymerases II, IV and V subunit 8B isoform X1 [Cucumis sativus] >KAE8637582.1 hypothetical protein CSA_017859 [Cucumis sativus] >KGN53231.1 hypothetical protein Csa_015226 [Cucumis sativus])

HSP 1 Score: 224 bits (572), Expect = 1.68e-73
Identity = 110/110 (100.00%), Postives = 110/110 (100.00%), Query Frame = 0 

Query: 1   MHMLLDVNTEIYPIDEGEKLLMVLSPTLNYDGSPVTSYKDQEGKKSLADKFEYIMHGKTY 60
           MHMLLDVNTEIYPIDEGEKLLMVLSPTLNYDGSPVTSYKDQEGKKSLADKFEYIMHGKTY
Sbjct: 37  MHMLLDVNTEIYPIDEGEKLLMVLSPTLNYDGSPVTSYKDQEGKKSLADKFEYIMHGKTY 96

Query: 61  KLSDEGSGSDLKVEVYASFGGLQMLLKGDPIHCAKFRVDQNMFLLLRKLT 110
           KLSDEGSGSDLKVEVYASFGGLQMLLKGDPIHCAKFRVDQNMFLLLRKLT
Sbjct: 97  KLSDEGSGSDLKVEVYASFGGLQMLLKGDPIHCAKFRVDQNMFLLLRKLT 146

[Close]
BLAST of Cucsat.G12064.T11 vs. NCBI nr
Match: XP_008453774.1 (PREDICTED: DNA-directed RNA polymerases II and V subunit 8A-like [Cucumis melo] >KAA0044730.1 DNA-directed RNA polymerases II and V subunit 8A-like [Cucumis melo var. makuwa] >TYK16730.1 DNA-directed RNA polymerases II and V subunit 8A-like [Cucumis melo var. makuwa])

HSP 1 Score: 218 bits (556), Expect = 4.63e-71
Identity = 108/110 (98.18%), Postives = 109/110 (99.09%), Query Frame = 0 

Query: 1   MHMLLDVNTEIYPIDEGEKLLMVLSPTLNYDGSPVTSYKDQEGKKSLADKFEYIMHGKTY 60
           M MLLDVNTEIYPIDEGEKLLMVLSPTLNYDGSPVTSYKDQEGKKSLADKFEYIMHGKTY
Sbjct: 37  MSMLLDVNTEIYPIDEGEKLLMVLSPTLNYDGSPVTSYKDQEGKKSLADKFEYIMHGKTY 96

Query: 61  KLSDEGSGSDLKVEVYASFGGLQMLLKGDPIHCAKFRVDQNMFLLLRKLT 110
           KLSDEGSGSDLKVEVYASFGGLQMLLKGDPI+CAKFRVDQNMFLLLRKLT
Sbjct: 97  KLSDEGSGSDLKVEVYASFGGLQMLLKGDPINCAKFRVDQNMFLLLRKLT 146

[Close]
BLAST of Cucsat.G12064.T11 vs. NCBI nr
Match: XP_022929200.1 (DNA-directed RNA polymerases II, IV and V subunit 8B-like [Cucurbita moschata] >XP_022929202.1 DNA-directed RNA polymerases II, IV and V subunit 8B-like [Cucurbita moschata] >XP_022985172.1 DNA-directed RNA polymerases II, IV and V subunit 8B-like [Cucurbita maxima] >XP_023551974.1 DNA-directed RNA polymerases II, IV and V subunit 8B-like [Cucurbita pepo subsp. pepo] >KAG6577274.1 DNA-directed RNA polymerases II, IV and V subunit 8B, partial [Cucurbita argyrosperma subsp. sororia] >KAG7015358.1 DNA-directed RNA polymerases II, IV and V subunit 8B [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 211 bits (537), Expect = 3.53e-68
Identity = 103/109 (94.50%), Postives = 106/109 (97.25%), Query Frame = 0 

Query: 1   MHMLLDVNTEIYPIDEGEKLLMVLSPTLNYDGSPVTSYKDQEGKKSLADKFEYIMHGKTY 60
           M+MLLDVNTEIYPIDEGEK+LMVLSPTLNYDG+PVTSY  QEGKKSLADKFEYIMHGK Y
Sbjct: 37  MYMLLDVNTEIYPIDEGEKILMVLSPTLNYDGAPVTSYSGQEGKKSLADKFEYIMHGKIY 96

Query: 61  KLSDEGSGSDLKVEVYASFGGLQMLLKGDPIHCAKFRVDQNMFLLLRKL 109
           KLSDEGSGSDLKVEVYASFGGLQMLLKGDPIHCAKFRVDQNMFLLLRKL
Sbjct: 97  KLSDEGSGSDLKVEVYASFGGLQMLLKGDPIHCAKFRVDQNMFLLLRKL 145

[Close]
BLAST of Cucsat.G12064.T11 vs. NCBI nr
Match: XP_022983196.1 (DNA-directed RNA polymerases II, IV and V subunit 8B-like [Cucurbita maxima] >XP_022983203.1 DNA-directed RNA polymerases II, IV and V subunit 8B-like [Cucurbita maxima] >XP_022983212.1 DNA-directed RNA polymerases II, IV and V subunit 8B-like [Cucurbita maxima] >XP_022983221.1 DNA-directed RNA polymerases II, IV and V subunit 8B-like [Cucurbita maxima] >XP_022983229.1 DNA-directed RNA polymerases II, IV and V subunit 8B-like [Cucurbita maxima])

HSP 1 Score: 209 bits (533), Expect = 1.49e-67
Identity = 100/110 (90.91%), Postives = 107/110 (97.27%), Query Frame = 0 

Query: 1   MHMLLDVNTEIYPIDEGEKLLMVLSPTLNYDGSPVTSYKDQEGKKSLADKFEYIMHGKTY 60
           M+MLLDVNTEIYPIDEG+K+LMVLSPTLNYDG+PVTSY  QEGKKSLADKFEYIMHGK Y
Sbjct: 37  MYMLLDVNTEIYPIDEGDKILMVLSPTLNYDGAPVTSYSGQEGKKSLADKFEYIMHGKLY 96

Query: 61  KLSDEGSGSDLKVEVYASFGGLQMLLKGDPIHCAKFRVDQNMFLLLRKLT 110
           KL+DEGSGSDLKVEVYASFGGLQM+LKGDP+HCAKFRVDQNMFLLLRKLT
Sbjct: 97  KLADEGSGSDLKVEVYASFGGLQMMLKGDPLHCAKFRVDQNMFLLLRKLT 146

[Close]
BLAST of Cucsat.G12064.T11 vs. NCBI nr
Match: XP_038901286.1 (DNA-directed RNA polymerases II, IV and V subunit 8B-like [Benincasa hispida])

HSP 1 Score: 208 bits (529), Expect = 6.25e-67
Identity = 101/108 (93.52%), Postives = 105/108 (97.22%), Query Frame = 0 

Query: 1   MHMLLDVNTEIYPIDEGEKLLMVLSPTLNYDGSPVTSYKDQEGKKSLADKFEYIMHGKTY 60
           M+MLLDVNTEIYPIDEGEK+LMVLSPTLNYDG+PVTSY  QEGKKSLADKFEYIMHGK Y
Sbjct: 37  MYMLLDVNTEIYPIDEGEKILMVLSPTLNYDGAPVTSYTGQEGKKSLADKFEYIMHGKIY 96

Query: 61  KLSDEGSGSDLKVEVYASFGGLQMLLKGDPIHCAKFRVDQNMFLLLRK 108
           KLSD+GSGSDLKVEVYASFGGLQMLLKGDPIHCAKFRVDQNMFLLLRK
Sbjct: 97  KLSDDGSGSDLKVEVYASFGGLQMLLKGDPIHCAKFRVDQNMFLLLRK 144

[Close]
BLAST of Cucsat.G12064.T11 vs. ExPASy TrEMBL
Match: A0A0A0KZC2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G031020 PE=3 SV=1)

HSP 1 Score: 224 bits (572), Expect = 8.15e-74
Identity = 110/110 (100.00%), Postives = 110/110 (100.00%), Query Frame = 0 

Query: 1   MHMLLDVNTEIYPIDEGEKLLMVLSPTLNYDGSPVTSYKDQEGKKSLADKFEYIMHGKTY 60
           MHMLLDVNTEIYPIDEGEKLLMVLSPTLNYDGSPVTSYKDQEGKKSLADKFEYIMHGKTY
Sbjct: 37  MHMLLDVNTEIYPIDEGEKLLMVLSPTLNYDGSPVTSYKDQEGKKSLADKFEYIMHGKTY 96

Query: 61  KLSDEGSGSDLKVEVYASFGGLQMLLKGDPIHCAKFRVDQNMFLLLRKLT 110
           KLSDEGSGSDLKVEVYASFGGLQMLLKGDPIHCAKFRVDQNMFLLLRKLT
Sbjct: 97  KLSDEGSGSDLKVEVYASFGGLQMLLKGDPIHCAKFRVDQNMFLLLRKLT 146

[Close]
BLAST of Cucsat.G12064.T11 vs. ExPASy TrEMBL
Match: A0A5A7TNG5 (DNA-directed RNA polymerases II and V subunit 8A-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold21G005690 PE=3 SV=1)

HSP 1 Score: 218 bits (556), Expect = 2.24e-71
Identity = 108/110 (98.18%), Postives = 109/110 (99.09%), Query Frame = 0 

Query: 1   MHMLLDVNTEIYPIDEGEKLLMVLSPTLNYDGSPVTSYKDQEGKKSLADKFEYIMHGKTY 60
           M MLLDVNTEIYPIDEGEKLLMVLSPTLNYDGSPVTSYKDQEGKKSLADKFEYIMHGKTY
Sbjct: 37  MSMLLDVNTEIYPIDEGEKLLMVLSPTLNYDGSPVTSYKDQEGKKSLADKFEYIMHGKTY 96

Query: 61  KLSDEGSGSDLKVEVYASFGGLQMLLKGDPIHCAKFRVDQNMFLLLRKLT 110
           KLSDEGSGSDLKVEVYASFGGLQMLLKGDPI+CAKFRVDQNMFLLLRKLT
Sbjct: 97  KLSDEGSGSDLKVEVYASFGGLQMLLKGDPINCAKFRVDQNMFLLLRKLT 146

[Close]
BLAST of Cucsat.G12064.T11 vs. ExPASy TrEMBL
Match: A0A1S3BY97 (DNA-directed RNA polymerases II and V subunit 8A-like OS=Cucumis melo OX=3656 GN=LOC103494404 PE=3 SV=1)

HSP 1 Score: 218 bits (556), Expect = 2.24e-71
Identity = 108/110 (98.18%), Postives = 109/110 (99.09%), Query Frame = 0 

Query: 1   MHMLLDVNTEIYPIDEGEKLLMVLSPTLNYDGSPVTSYKDQEGKKSLADKFEYIMHGKTY 60
           M MLLDVNTEIYPIDEGEKLLMVLSPTLNYDGSPVTSYKDQEGKKSLADKFEYIMHGKTY
Sbjct: 37  MSMLLDVNTEIYPIDEGEKLLMVLSPTLNYDGSPVTSYKDQEGKKSLADKFEYIMHGKTY 96

Query: 61  KLSDEGSGSDLKVEVYASFGGLQMLLKGDPIHCAKFRVDQNMFLLLRKLT 110
           KLSDEGSGSDLKVEVYASFGGLQMLLKGDPI+CAKFRVDQNMFLLLRKLT
Sbjct: 97  KLSDEGSGSDLKVEVYASFGGLQMLLKGDPINCAKFRVDQNMFLLLRKLT 146

[Close]
BLAST of Cucsat.G12064.T11 vs. ExPASy TrEMBL
Match: A0A6J1ETP8 (DNA-directed RNA polymerases II, IV and V subunit 8B-like OS=Cucurbita moschata OX=3662 GN=LOC111435865 PE=3 SV=1)

HSP 1 Score: 211 bits (537), Expect = 1.71e-68
Identity = 103/109 (94.50%), Postives = 106/109 (97.25%), Query Frame = 0 

Query: 1   MHMLLDVNTEIYPIDEGEKLLMVLSPTLNYDGSPVTSYKDQEGKKSLADKFEYIMHGKTY 60
           M+MLLDVNTEIYPIDEGEK+LMVLSPTLNYDG+PVTSY  QEGKKSLADKFEYIMHGK Y
Sbjct: 37  MYMLLDVNTEIYPIDEGEKILMVLSPTLNYDGAPVTSYSGQEGKKSLADKFEYIMHGKIY 96

Query: 61  KLSDEGSGSDLKVEVYASFGGLQMLLKGDPIHCAKFRVDQNMFLLLRKL 109
           KLSDEGSGSDLKVEVYASFGGLQMLLKGDPIHCAKFRVDQNMFLLLRKL
Sbjct: 97  KLSDEGSGSDLKVEVYASFGGLQMLLKGDPIHCAKFRVDQNMFLLLRKL 145

[Close]
BLAST of Cucsat.G12064.T11 vs. ExPASy TrEMBL
Match: A0A6J1J454 (DNA-directed RNA polymerases II, IV and V subunit 8B-like OS=Cucurbita maxima OX=3661 GN=LOC111483257 PE=3 SV=1)

HSP 1 Score: 211 bits (537), Expect = 1.71e-68
Identity = 103/109 (94.50%), Postives = 106/109 (97.25%), Query Frame = 0 

Query: 1   MHMLLDVNTEIYPIDEGEKLLMVLSPTLNYDGSPVTSYKDQEGKKSLADKFEYIMHGKTY 60
           M+MLLDVNTEIYPIDEGEK+LMVLSPTLNYDG+PVTSY  QEGKKSLADKFEYIMHGK Y
Sbjct: 37  MYMLLDVNTEIYPIDEGEKILMVLSPTLNYDGAPVTSYSGQEGKKSLADKFEYIMHGKIY 96

Query: 61  KLSDEGSGSDLKVEVYASFGGLQMLLKGDPIHCAKFRVDQNMFLLLRKL 109
           KLSDEGSGSDLKVEVYASFGGLQMLLKGDPIHCAKFRVDQNMFLLLRKL
Sbjct: 97  KLSDEGSGSDLKVEVYASFGGLQMLLKGDPIHCAKFRVDQNMFLLLRKL 145

The following BLAST results are available for this feature:
BLAST of Cucsat.G12064.T11 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
O810971.7e-3059.63DNA-directed RNA polymerases II and V subunit 8A OS=Arabidopsis thaliana OX=3702... [more]
Q9M1A88.5e-3057.80DNA-directed RNA polymerases II, IV and V subunit 8B OS=Arabidopsis thaliana OX=... [more]
Q198265.2e-1940.37Probable DNA-directed RNA polymerases I, II, and III subunit RPABC3 OS=Caenorhab... [more]
A8XT818.8e-1940.37Probable DNA-directed RNA polymerases I, II, and III subunit RPABC3 OS=Caenorhab... [more]
Q54YW89.8e-1844.44DNA-directed RNA polymerases I, II, and III subunit rpabc3 OS=Dictyostelium disc... [more]
BLAST of Cucsat.G12064.T11 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_004149143.11.68e-73100.00DNA-directed RNA polymerases II, IV and V subunit 8B isoform X1 [Cucumis sativus... [more]
XP_008453774.14.63e-7198.18PREDICTED: DNA-directed RNA polymerases II and V subunit 8A-like [Cucumis melo] ... [more]
XP_022929200.13.53e-6894.50DNA-directed RNA polymerases II, IV and V subunit 8B-like [Cucurbita moschata] >... [more]
XP_022983196.11.49e-6790.91DNA-directed RNA polymerases II, IV and V subunit 8B-like [Cucurbita maxima] >XP... [more]
XP_038901286.16.25e-6793.52DNA-directed RNA polymerases II, IV and V subunit 8B-like [Benincasa hispida][more]
BLAST of Cucsat.G12064.T11 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KZC28.15e-74100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G031020 PE=3 SV=1[more]
A0A5A7TNG52.24e-7198.18DNA-directed RNA polymerases II and V subunit 8A-like OS=Cucumis melo var. makuw... [more]
A0A1S3BY972.24e-7198.18DNA-directed RNA polymerases II and V subunit 8A-like OS=Cucumis melo OX=3656 GN... [more]
A0A6J1ETP81.71e-6894.50DNA-directed RNA polymerases II, IV and V subunit 8B-like OS=Cucurbita moschata ... [more]
A0A6J1J4541.71e-6894.50DNA-directed RNA polymerases II, IV and V subunit 8B-like OS=Cucurbita maxima OX... [more]
InterPro
Analysis Name: InterPro Annotations of Cucumber (B10) v3
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR005570RNA polymerase, Rpb8SMARTSM00658rpol8neucoord: 1..108
e-value: 2.5E-23
score: 93.5
IPR005570RNA polymerase, Rpb8PFAMPF03870RNA_pol_Rpb8coord: 1..108
e-value: 1.3E-35
score: 122.5
IPR005570RNA polymerase, Rpb8PIRSFPIRSF000779RPB8coord: 1..110
e-value: 7.6E-31
score: 105.0
IPR005570RNA polymerase, Rpb8PANTHERPTHR10917DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC3coord: 1..109
NoneNo IPR availableGENE3D2.40.50.140coord: 1..110
e-value: 3.0E-38
score: 133.1
NoneNo IPR availablePANTHERPTHR10917:SF1DNA-DIRECTED RNA POLYMERASE I, IIcoord: 1..109
IPR012340Nucleic acid-binding, OB-foldSUPERFAMILY50249Nucleic acid-binding proteinscoord: 1..108

Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Cucsat.G12064Cucsat.G12064gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Cucsat.G12064.T11.E1Cucsat.G12064.T11.E1exon
Cucsat.G12064.T11.E2Cucsat.G12064.T11.E2exon
Cucsat.G12064.T11.E3Cucsat.G12064.T11.E3exon
Cucsat.G12064.T11.E4Cucsat.G12064.T11.E4exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Cucsat.G12064.T11.C1Cucsat.G12064.T11.C1CDS
Cucsat.G12064.T11.C2Cucsat.G12064.T11.C2CDS
Cucsat.G12064.T11.C3Cucsat.G12064.T11.C3CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Cucsat.G12064.T11Cucsat.G12064.T11-proteinpolypeptide


GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006351 transcription, DNA-templated
cellular_component GO:0005736 RNA polymerase I complex
cellular_component GO:0005665 RNA polymerase II, core complex
cellular_component GO:0005666 RNA polymerase III complex
molecular_function GO:0003899 DNA-directed 5'-3' RNA polymerase activity